AutoCloner

Multiple sequence alignment - TraesCS7D01G033400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G033400	chr7D	100.000	4466	0	0	1	4466	17254082	17249617	0.000000e+00	8248.0
1	TraesCS7D01G033400	chr7D	90.751	173	16	0	1	173	113573450	113573278	9.660000e-57	231.0
2	TraesCS7D01G033400	chr7D	90.230	174	16	1	1	173	20626713	20626540	4.490000e-55	226.0
3	TraesCS7D01G033400	chr7D	89.595	173	18	0	1	173	613551728	613551900	2.090000e-53	220.0
4	TraesCS7D01G033400	chr7D	90.361	166	16	0	1	166	7291412	7291577	7.520000e-53	219.0
5	TraesCS7D01G033400	chr7A	97.604	3882	73	7	604	4466	16645707	16641827	0.000000e+00	6636.0
6	TraesCS7D01G033400	chr7A	88.166	507	38	6	1	498	16646255	16645762	6.440000e-163	584.0
7	TraesCS7D01G033400	chr4A	86.317	2726	295	39	988	3682	717018679	717021357	0.000000e+00	2896.0
8	TraesCS7D01G033400	chr4A	82.572	1773	243	36	1033	2793	676537970	676536252	0.000000e+00	1502.0
9	TraesCS7D01G033400	chr4A	85.132	491	53	16	3675	4150	717021375	717021860	6.720000e-133	484.0
10	TraesCS7D01G033400	chr4A	81.489	524	49	22	54	555	538830830	538831327	1.950000e-103	387.0
11	TraesCS7D01G033400	chr4A	84.746	59	8	1	3576	3633	676535487	676535429	1.740000e-04	58.4
12	TraesCS7D01G033400	chr5D	85.467	1617	205	17	994	2602	344829395	344830989	0.000000e+00	1657.0
13	TraesCS7D01G033400	chr5D	81.026	975	134	29	2598	3554	344831054	344831995	0.000000e+00	728.0
14	TraesCS7D01G033400	chr5D	83.559	517	47	26	54	558	514926988	514926498	2.450000e-122	449.0
15	TraesCS7D01G033400	chr5D	82.955	528	51	17	54	558	432035423	432034912	1.470000e-119	440.0
16	TraesCS7D01G033400	chr5D	78.692	535	67	25	55	558	260097578	260097060	3.350000e-81	313.0
17	TraesCS7D01G033400	chr5B	84.804	1632	211	20	977	2602	406934872	406933272	0.000000e+00	1605.0
18	TraesCS7D01G033400	chr5B	80.443	542	86	11	3029	3554	406931574	406931037	3.240000e-106	396.0
19	TraesCS7D01G033400	chr5B	84.777	381	37	7	2598	2978	406933210	406932851	3.280000e-96	363.0
20	TraesCS7D01G033400	chr5A	82.879	514	63	12	66	558	700870235	700869726	5.300000e-119	438.0
21	TraesCS7D01G033400	chr5A	82.704	503	48	23	82	555	340406876	340407368	1.160000e-110	411.0
22	TraesCS7D01G033400	chr6D	83.399	506	40	21	5	489	338516454	338515972	3.190000e-116	429.0
23	TraesCS7D01G033400	chr6D	80.426	516	50	27	54	558	94774272	94773797	3.310000e-91	346.0
24	TraesCS7D01G033400	chr2D	82.975	511	41	19	64	554	470048710	470048226	1.920000e-113	420.0
25	TraesCS7D01G033400	chr2D	83.801	463	28	22	57	497	120549148	120549585	3.240000e-106	396.0
26	TraesCS7D01G033400	chr4D	81.250	528	51	25	1	504	498582637	498583140	2.520000e-102	383.0
27	TraesCS7D01G033400	chr2A	80.639	501	44	18	82	545	606810315	606809831	5.530000e-89	339.0
28	TraesCS7D01G033400	chr2A	73.148	540	115	14	1864	2391	750416650	750417171	2.760000e-37	167.0
29	TraesCS7D01G033400	chr1B	79.562	548	55	22	55	556	594918688	594918152	5.530000e-89	339.0
30	TraesCS7D01G033400	chr1B	91.813	171	14	0	3	173	268652254	268652084	5.770000e-59	239.0
31	TraesCS7D01G033400	chrUn	78.049	615	70	26	1	558	86428907	86429513	1.200000e-85	327.0
32	TraesCS7D01G033400	chr3D	90.751	173	16	0	1	173	605757954	605757782	9.660000e-57	231.0
33	TraesCS7D01G033400	chr1D	72.453	530	112	18	1865	2380	486743517	486743008	6.020000e-29	139.0
34	TraesCS7D01G033400	chr1D	71.296	540	123	16	1865	2391	396188548	396189068	4.720000e-20	110.0
35	TraesCS7D01G033400	chr1A	73.184	358	88	4	2024	2380	584340750	584340400	6.070000e-24	122.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G033400	chr7D	17249617	17254082	4465	True	8248.0	8248	100.000000	1	4466	1	chr7D.!!$R1	4465
1	TraesCS7D01G033400	chr7A	16641827	16646255	4428	True	3610.0	6636	92.885000	1	4466	2	chr7A.!!$R1	4465
2	TraesCS7D01G033400	chr4A	717018679	717021860	3181	False	1690.0	2896	85.724500	988	4150	2	chr4A.!!$F2	3162
3	TraesCS7D01G033400	chr4A	676535429	676537970	2541	True	780.2	1502	83.659000	1033	3633	2	chr4A.!!$R1	2600
4	TraesCS7D01G033400	chr5D	344829395	344831995	2600	False	1192.5	1657	83.246500	994	3554	2	chr5D.!!$F1	2560
5	TraesCS7D01G033400	chr5D	432034912	432035423	511	True	440.0	440	82.955000	54	558	1	chr5D.!!$R2	504
6	TraesCS7D01G033400	chr5D	260097060	260097578	518	True	313.0	313	78.692000	55	558	1	chr5D.!!$R1	503
7	TraesCS7D01G033400	chr5B	406931037	406934872	3835	True	788.0	1605	83.341333	977	3554	3	chr5B.!!$R1	2577
8	TraesCS7D01G033400	chr5A	700869726	700870235	509	True	438.0	438	82.879000	66	558	1	chr5A.!!$R1	492
9	TraesCS7D01G033400	chr4D	498582637	498583140	503	False	383.0	383	81.250000	1	504	1	chr4D.!!$F1	503
10	TraesCS7D01G033400	chr1B	594918152	594918688	536	True	339.0	339	79.562000	55	556	1	chr1B.!!$R2	501
11	TraesCS7D01G033400	chrUn	86428907	86429513	606	False	327.0	327	78.049000	1	558	1	chrUn.!!$F1	557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
560	654	0.106335	TTTAACACCGGTTCGCCTGA	59.894	50.0	2.97	38.45	3.86	F
584	678	0.106335	TTTAACACCGGTTCGCCTGA	59.894	50.0	2.97	38.45	3.86	F
585	679	0.322322	TTAACACCGGTTCGCCTGAT	59.678	50.0	2.97	38.45	2.90	F
586	680	0.322322	TAACACCGGTTCGCCTGATT	59.678	50.0	2.97	38.45	2.57	F
587	681	0.536460	AACACCGGTTCGCCTGATTT	60.536	50.0	2.97	29.00	2.17	F
588	682	0.536460	ACACCGGTTCGCCTGATTTT	60.536	50.0	2.97	34.30	1.82	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1779	1881	0.692476	CCAGGTGATCCTTGTGGACA	59.308	55.000	0.00	46.51	4.02	R
2371	2476	1.133575	CCTCATTGCCATCTCCACCAT	60.134	52.381	0.00	0.00	3.55	R
2385	2490	5.288804	CCGAAAAACAACATGAACCTCATT	58.711	37.500	0.00	34.28	2.57	R
2821	3028	6.306987	ACCACACAGATTCATAGTTTTTCCT	58.693	36.000	0.00	0.00	3.36	R
3002	4444	1.923227	GAAAGGTAGCTTGCCACGCC	61.923	60.000	8.16	0.00	5.68	R
3474	4996	0.792640	GTGGTGCAATGAGTCGAGTG	59.207	55.000	0.00	0.00	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
207	254	1.952102	GAAGGGGGCGTCATCGTGTA	61.952	60.000	0.00	0.00	39.49	2.90
253	300	2.113139	CCAGCCAAACCTGTCCGT	59.887	61.111	0.00	0.00	0.00	4.69
422	512	5.473039	GCAGAAATTTATGTCCTGTTTGCT	58.527	37.500	13.94	0.00	0.00	3.91
491	583	9.332301	CAAAAATATTTAAAAACGGCGACTAGA	57.668	29.630	16.62	0.00	0.00	2.43
545	639	4.082463	CACTCGCCCCAAGCTAATTTTTAA	60.082	41.667	0.00	0.00	40.39	1.52
547	641	3.827302	TCGCCCCAAGCTAATTTTTAACA	59.173	39.130	0.00	0.00	40.39	2.41
558	652	1.677942	TTTTTAACACCGGTTCGCCT	58.322	45.000	2.97	0.00	38.45	5.52
559	653	0.945813	TTTTAACACCGGTTCGCCTG	59.054	50.000	2.97	0.00	38.45	4.85
560	654	0.106335	TTTAACACCGGTTCGCCTGA	59.894	50.000	2.97	0.00	38.45	3.86
561	655	0.322322	TTAACACCGGTTCGCCTGAT	59.678	50.000	2.97	0.00	38.45	2.90
562	656	0.322322	TAACACCGGTTCGCCTGATT	59.678	50.000	2.97	0.00	38.45	2.57
563	657	0.536460	AACACCGGTTCGCCTGATTT	60.536	50.000	2.97	0.00	29.00	2.17
564	658	0.536460	ACACCGGTTCGCCTGATTTT	60.536	50.000	2.97	0.00	34.30	1.82
565	659	0.596082	CACCGGTTCGCCTGATTTTT	59.404	50.000	2.97	0.00	34.30	1.94
582	676	1.677942	TTTTTAACACCGGTTCGCCT	58.322	45.000	2.97	0.00	38.45	5.52
583	677	0.945813	TTTTAACACCGGTTCGCCTG	59.054	50.000	2.97	0.00	38.45	4.85
584	678	0.106335	TTTAACACCGGTTCGCCTGA	59.894	50.000	2.97	0.00	38.45	3.86
585	679	0.322322	TTAACACCGGTTCGCCTGAT	59.678	50.000	2.97	0.00	38.45	2.90
586	680	0.322322	TAACACCGGTTCGCCTGATT	59.678	50.000	2.97	0.00	38.45	2.57
587	681	0.536460	AACACCGGTTCGCCTGATTT	60.536	50.000	2.97	0.00	29.00	2.17
588	682	0.536460	ACACCGGTTCGCCTGATTTT	60.536	50.000	2.97	0.00	34.30	1.82
589	683	0.596082	CACCGGTTCGCCTGATTTTT	59.404	50.000	2.97	0.00	34.30	1.94
636	730	1.197721	CTAACAGCGGTGGCAAAAGAG	59.802	52.381	20.20	1.34	43.41	2.85
747	841	1.266718	TCAGAATGCGCACTTTTGACC	59.733	47.619	14.90	0.00	34.76	4.02
760	854	2.976284	TTTGACCGGACCCCACCTCT	62.976	60.000	9.46	0.00	0.00	3.69
766	860	3.403558	GACCCCACCTCTCAGGCC	61.404	72.222	0.00	0.00	39.63	5.19
819	913	1.200020	GGAGTAAAGCAAAGCACGCAT	59.800	47.619	0.00	0.00	0.00	4.73
834	928	1.210155	GCATCACGGGCTCAAACAC	59.790	57.895	0.00	0.00	0.00	3.32
860	954	3.050275	GCGTTGAGTGAGGGCCAC	61.050	66.667	6.18	0.00	46.03	5.01
964	1058	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
966	1060	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
968	1062	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
970	1064	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
972	1066	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
974	1068	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
976	1070	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
982	1084	2.289382	ACACACACACACACACAGAGAA	60.289	45.455	0.00	0.00	0.00	2.87
1416	1518	2.750350	CTCCGGGTGCAGACCTTT	59.250	61.111	0.00	0.00	42.66	3.11
1450	1552	1.639635	CCCCCTCTGGTTGATCTGGG	61.640	65.000	0.00	0.00	34.68	4.45
1558	1660	3.057876	CGACTACATGAGCTATGAGGACC	60.058	52.174	0.00	0.00	39.21	4.46
1570	1672	0.689080	TGAGGACCATCTCCCTGCTC	60.689	60.000	0.00	0.00	40.53	4.26
1744	1846	6.315714	AGGGAGAGAATAATAATCGAGTCCA	58.684	40.000	0.00	0.00	0.00	4.02
1779	1881	3.784763	AGATTCAGTTGGATCCAGATGGT	59.215	43.478	21.71	14.01	36.34	3.55
1996	2098	0.737367	CAAGATCCGCAAGCTCGTCA	60.737	55.000	0.00	0.00	0.00	4.35
2385	2490	1.688884	TCCGATGGTGGAGATGGCA	60.689	57.895	0.00	0.00	33.05	4.92
3002	4444	1.135024	CAAATTCAATCGCCAGTGGGG	60.135	52.381	19.96	19.96	40.85	4.96
3474	4996	3.803778	CAGCCAACCAATGAAAAGTTGTC	59.196	43.478	0.00	0.00	39.36	3.18
3710	5267	7.032580	CCTATGTACTAGCTAGCTTGCATAAG	58.967	42.308	24.88	15.32	36.97	1.73
3790	5355	1.656818	AATGCATGGTACTGTGCGGC	61.657	55.000	0.00	0.00	41.94	6.53
3907	5475	9.526713	CAATAGTATATGAGTACCATGCAGATC	57.473	37.037	0.00	0.00	36.71	2.75
4022	5593	6.981559	GTCCAGGATCAACTAGCTTAAGTTAG	59.018	42.308	21.00	21.00	37.61	2.34
4189	5767	5.192927	CAAGATACAAGGTGCCAAGGATAA	58.807	41.667	0.00	0.00	0.00	1.75
4194	5772	2.890311	CAAGGTGCCAAGGATAACAACA	59.110	45.455	0.00	0.00	0.00	3.33
4255	5833	0.461693	GAGCACTGCATGGAGTCCTC	60.462	60.000	20.83	20.83	0.00	3.71
4261	5839	1.145819	GCATGGAGTCCTCAGAGCC	59.854	63.158	11.33	0.00	0.00	4.70
4269	5847	1.035923	GTCCTCAGAGCCATCATCGA	58.964	55.000	0.00	0.00	0.00	3.59
4270	5848	1.035923	TCCTCAGAGCCATCATCGAC	58.964	55.000	0.00	0.00	0.00	4.20
4299	5877	1.906990	AACGGAGAGAAGAACGGAGA	58.093	50.000	0.00	0.00	0.00	3.71
4334	5912	3.881089	GAGACTAGTAGACAGAGGAAGCC	59.119	52.174	3.59	0.00	0.00	4.35
4421	5999	2.176273	CCTCGCGCTGGATCAAAGG	61.176	63.158	5.56	1.28	0.00	3.11

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	4.796231	CCCGGCTCCGTCTTCACG	62.796	72.222	7.59	0.00	46.29	4.35
51	52	3.644399	GACCCGGCTCCGTCTTCAC	62.644	68.421	7.59	0.00	37.81	3.18
207	254	0.454620	GTCGTCGTCGCTGTCTTCAT	60.455	55.000	0.00	0.00	36.96	2.57
269	316	2.688666	CTGCTGCTGGACCCCCTA	60.689	66.667	0.00	0.00	0.00	3.53
275	322	2.666190	TTCACGCTGCTGCTGGAC	60.666	61.111	14.03	0.00	36.97	4.02
278	325	1.496393	CTTCTTCACGCTGCTGCTG	59.504	57.895	14.03	10.65	36.97	4.41
280	327	1.633852	CTCCTTCTTCACGCTGCTGC	61.634	60.000	5.34	5.34	0.00	5.25
320	373	3.740397	CGTAGTCACCGTCCGCCA	61.740	66.667	0.00	0.00	0.00	5.69
401	491	6.899393	TCAGCAAACAGGACATAAATTTCT	57.101	33.333	0.00	0.00	0.00	2.52
422	512	5.697473	TCGGCAAACATTACAAAGATTCA	57.303	34.783	0.00	0.00	0.00	2.57
545	639	0.536460	AAAATCAGGCGAACCGGTGT	60.536	50.000	8.52	0.00	42.76	4.16
547	641	3.030415	AAAAATCAGGCGAACCGGT	57.970	47.368	0.00	0.00	42.76	5.28
563	657	1.334243	CAGGCGAACCGGTGTTAAAAA	59.666	47.619	8.52	0.00	42.76	1.94
564	658	0.945813	CAGGCGAACCGGTGTTAAAA	59.054	50.000	8.52	0.00	42.76	1.52
565	659	0.106335	TCAGGCGAACCGGTGTTAAA	59.894	50.000	8.52	0.00	42.76	1.52
566	660	0.322322	ATCAGGCGAACCGGTGTTAA	59.678	50.000	8.52	0.00	42.76	2.01
567	661	0.322322	AATCAGGCGAACCGGTGTTA	59.678	50.000	8.52	0.00	42.76	2.41
568	662	0.536460	AAATCAGGCGAACCGGTGTT	60.536	50.000	8.52	0.00	42.76	3.32
569	663	0.536460	AAAATCAGGCGAACCGGTGT	60.536	50.000	8.52	0.00	42.76	4.16
570	664	0.596082	AAAAATCAGGCGAACCGGTG	59.404	50.000	8.52	0.00	42.76	4.94
571	665	3.030415	AAAAATCAGGCGAACCGGT	57.970	47.368	0.00	0.00	42.76	5.28
586	680	3.455737	CCTCAAGGGGCTCCAAAAA	57.544	52.632	4.79	0.00	34.83	1.94
595	689	1.530771	CATCTCCAGCCTCAAGGGG	59.469	63.158	0.00	0.00	35.18	4.79
596	690	1.153005	GCATCTCCAGCCTCAAGGG	60.153	63.158	0.00	0.00	35.18	3.95
597	691	0.179051	GAGCATCTCCAGCCTCAAGG	60.179	60.000	0.00	0.00	38.53	3.61
598	692	3.383092	GAGCATCTCCAGCCTCAAG	57.617	57.895	0.00	0.00	0.00	3.02
627	721	2.685388	GGCTATGAACCTCTCTTTTGCC	59.315	50.000	0.00	0.00	0.00	4.52
636	730	0.530870	GGTCGCTGGCTATGAACCTC	60.531	60.000	0.00	0.00	0.00	3.85
747	841	3.077556	CCTGAGAGGTGGGGTCCG	61.078	72.222	0.00	0.00	0.00	4.79
760	854	2.391724	GACTGTCAAACGGGGCCTGA	62.392	60.000	21.81	3.81	0.00	3.86
766	860	0.107831	TCCCTTGACTGTCAAACGGG	59.892	55.000	28.95	28.95	41.01	5.28
819	913	0.736053	GTTTGTGTTTGAGCCCGTGA	59.264	50.000	0.00	0.00	0.00	4.35
826	920	5.211454	TCAACGCATATGTTTGTGTTTGAG	58.789	37.500	14.96	0.00	45.43	3.02
834	928	3.181507	CCCTCACTCAACGCATATGTTTG	60.182	47.826	4.29	8.48	0.00	2.93
860	954	2.071540	TCTGATGAAGCGCTCAAACAG	58.928	47.619	12.06	20.69	40.65	3.16
964	1058	3.261580	TCTTTCTCTGTGTGTGTGTGTG	58.738	45.455	0.00	0.00	0.00	3.82
966	1060	2.868583	CCTCTTTCTCTGTGTGTGTGTG	59.131	50.000	0.00	0.00	0.00	3.82
968	1062	3.388308	CTCCTCTTTCTCTGTGTGTGTG	58.612	50.000	0.00	0.00	0.00	3.82
970	1064	2.289320	CCCTCCTCTTTCTCTGTGTGTG	60.289	54.545	0.00	0.00	0.00	3.82
972	1066	1.277557	CCCCTCCTCTTTCTCTGTGTG	59.722	57.143	0.00	0.00	0.00	3.82
974	1068	0.908198	CCCCCTCCTCTTTCTCTGTG	59.092	60.000	0.00	0.00	0.00	3.66
976	1070	1.494960	CTCCCCCTCCTCTTTCTCTG	58.505	60.000	0.00	0.00	0.00	3.35
982	1084	0.938926	ATCCTCCTCCCCCTCCTCTT	60.939	60.000	0.00	0.00	0.00	2.85
1416	1518	1.074926	GGGGATCCTGAGGAGCTCA	60.075	63.158	19.57	0.00	40.93	4.26
1558	1660	1.096386	GCAGCAAGAGCAGGGAGATG	61.096	60.000	0.00	0.00	45.49	2.90
1589	1691	2.170187	ACCTCCTGCTCATCATCAGAAC	59.830	50.000	0.00	0.00	32.26	3.01
1744	1846	4.899352	ACTGAATCTTGTAGCTCCTGTT	57.101	40.909	0.00	0.00	0.00	3.16
1779	1881	0.692476	CCAGGTGATCCTTGTGGACA	59.308	55.000	0.00	0.00	46.51	4.02
2371	2476	1.133575	CCTCATTGCCATCTCCACCAT	60.134	52.381	0.00	0.00	0.00	3.55
2385	2490	5.288804	CCGAAAAACAACATGAACCTCATT	58.711	37.500	0.00	0.00	34.28	2.57
2821	3028	6.306987	ACCACACAGATTCATAGTTTTTCCT	58.693	36.000	0.00	0.00	0.00	3.36
3002	4444	1.923227	GAAAGGTAGCTTGCCACGCC	61.923	60.000	8.16	0.00	0.00	5.68
3474	4996	0.792640	GTGGTGCAATGAGTCGAGTG	59.207	55.000	0.00	0.00	0.00	3.51
3790	5355	7.931948	AGGTCCCACGAGACTAAATATATTTTG	59.068	37.037	15.64	15.47	36.95	2.44
3878	5444	8.379428	TGCATGGTACTCATATACTATTGGAT	57.621	34.615	0.00	0.00	34.12	3.41
3907	5475	1.420138	ACCCGGGAGCCAAATGTATAG	59.580	52.381	32.02	0.00	0.00	1.31
4022	5593	0.832135	TCATCCCCTCCGTATGGCTC	60.832	60.000	0.00	0.00	34.14	4.70
4189	5767	2.096248	TGTTTTCTCGGGCTTTGTTGT	58.904	42.857	0.00	0.00	0.00	3.32
4194	5772	2.481276	GCTTGTTGTTTTCTCGGGCTTT	60.481	45.455	0.00	0.00	0.00	3.51
4255	5833	2.145958	AATCGTCGATGATGGCTCTG	57.854	50.000	20.52	0.00	0.00	3.35
4261	5839	4.085055	CCGTTTTCCTAATCGTCGATGATG	60.085	45.833	20.52	9.18	0.00	3.07
4269	5847	4.461781	TCTTCTCTCCGTTTTCCTAATCGT	59.538	41.667	0.00	0.00	0.00	3.73
4270	5848	4.995124	TCTTCTCTCCGTTTTCCTAATCG	58.005	43.478	0.00	0.00	0.00	3.34
4299	5877	6.877322	GTCTACTAGTCTCTCTCTCAAGTTGT	59.123	42.308	0.00	0.00	0.00	3.32
4334	5912	1.202211	CCATGTGTTGGCGATGACATG	60.202	52.381	17.13	17.13	43.49	3.21
4437	6015	3.378512	TCTAGGTGAGGTTCTGCATCAT	58.621	45.455	0.00	0.00	40.21	2.45
4438	6016	2.762887	CTCTAGGTGAGGTTCTGCATCA	59.237	50.000	0.00	0.00	39.08	3.07

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.