Multiple sequence alignment - TraesCS7D01G033200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G033200 chr7D 100.000 2453 0 0 1 2453 17208798 17211250 0.000000e+00 4530.0
1 TraesCS7D01G033200 chr7D 72.134 689 160 19 768 1447 16705338 16704673 1.940000e-41 180.0
2 TraesCS7D01G033200 chr7D 86.364 88 11 1 760 847 16705570 16705484 7.220000e-16 95.3
3 TraesCS7D01G033200 chr4A 91.088 1470 100 14 1 1444 717048580 717047116 0.000000e+00 1960.0
4 TraesCS7D01G033200 chr4A 73.766 709 153 25 649 1346 718032839 718033525 5.240000e-62 248.0
5 TraesCS7D01G033200 chr4A 71.449 697 163 20 760 1447 717971628 717972297 4.220000e-33 152.0
6 TraesCS7D01G033200 chr4A 87.500 88 11 0 760 847 717971403 717971490 4.320000e-18 102.0
7 TraesCS7D01G033200 chr4A 85.185 81 9 1 1486 1566 717047012 717046935 2.020000e-11 80.5
8 TraesCS7D01G033200 chr7A 90.627 1259 98 11 92 1332 16602666 16603922 0.000000e+00 1653.0
9 TraesCS7D01G033200 chr7A 93.182 88 6 0 1487 1574 16604114 16604201 1.980000e-26 130.0
10 TraesCS7D01G033200 chr7A 84.127 126 12 3 1502 1627 16653763 16653880 5.540000e-22 115.0
11 TraesCS7D01G033200 chr7A 88.750 80 9 0 768 847 15690231 15690152 5.580000e-17 99.0
12 TraesCS7D01G033200 chr4D 91.288 528 43 3 1675 2200 72530843 72531369 0.000000e+00 717.0
13 TraesCS7D01G033200 chr4D 89.922 258 17 5 2200 2453 72531481 72531733 8.460000e-85 324.0
14 TraesCS7D01G033200 chrUn 90.056 533 52 1 1669 2200 49503201 49503733 0.000000e+00 689.0
15 TraesCS7D01G033200 chr6D 89.564 527 54 1 1675 2200 300069972 300069446 0.000000e+00 667.0
16 TraesCS7D01G033200 chr6D 88.039 510 56 4 1694 2200 2443718 2443211 1.260000e-167 599.0
17 TraesCS7D01G033200 chr7B 89.184 527 56 1 1675 2200 240972144 240971618 0.000000e+00 656.0
18 TraesCS7D01G033200 chr7B 88.446 251 27 1 2201 2451 590496722 590496474 3.960000e-78 302.0
19 TraesCS7D01G033200 chr1D 88.994 527 57 1 1675 2200 481715627 481715101 0.000000e+00 651.0
20 TraesCS7D01G033200 chr5B 88.847 529 52 6 1675 2200 711622640 711622116 0.000000e+00 643.0
21 TraesCS7D01G033200 chr6B 87.476 527 61 5 1676 2200 564274976 564274453 9.700000e-169 603.0
22 TraesCS7D01G033200 chr2A 87.115 520 61 6 1675 2191 657840180 657840696 3.510000e-163 584.0
23 TraesCS7D01G033200 chr5A 88.213 263 21 5 2200 2453 355027518 355027257 3.060000e-79 305.0
24 TraesCS7D01G033200 chr3B 87.938 257 27 2 2200 2453 824146600 824146855 1.430000e-77 300.0
25 TraesCS7D01G033200 chr3B 87.938 257 27 2 2200 2453 824171677 824171932 1.430000e-77 300.0
26 TraesCS7D01G033200 chr5D 87.843 255 28 2 2202 2453 119608414 119608160 1.840000e-76 296.0
27 TraesCS7D01G033200 chr3D 87.795 254 30 1 2200 2453 453195344 453195092 1.840000e-76 296.0
28 TraesCS7D01G033200 chr2D 87.938 257 23 5 2200 2453 610265748 610265497 1.840000e-76 296.0
29 TraesCS7D01G033200 chr2D 87.549 257 29 1 2200 2453 629246805 629246549 6.630000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G033200 chr7D 17208798 17211250 2452 False 4530.00 4530 100.0000 1 2453 1 chr7D.!!$F1 2452
1 TraesCS7D01G033200 chr4A 717046935 717048580 1645 True 1020.25 1960 88.1365 1 1566 2 chr4A.!!$R1 1565
2 TraesCS7D01G033200 chr4A 718032839 718033525 686 False 248.00 248 73.7660 649 1346 1 chr4A.!!$F1 697
3 TraesCS7D01G033200 chr7A 16602666 16604201 1535 False 891.50 1653 91.9045 92 1574 2 chr7A.!!$F2 1482
4 TraesCS7D01G033200 chr4D 72530843 72531733 890 False 520.50 717 90.6050 1675 2453 2 chr4D.!!$F1 778
5 TraesCS7D01G033200 chrUn 49503201 49503733 532 False 689.00 689 90.0560 1669 2200 1 chrUn.!!$F1 531
6 TraesCS7D01G033200 chr6D 300069446 300069972 526 True 667.00 667 89.5640 1675 2200 1 chr6D.!!$R2 525
7 TraesCS7D01G033200 chr6D 2443211 2443718 507 True 599.00 599 88.0390 1694 2200 1 chr6D.!!$R1 506
8 TraesCS7D01G033200 chr7B 240971618 240972144 526 True 656.00 656 89.1840 1675 2200 1 chr7B.!!$R1 525
9 TraesCS7D01G033200 chr1D 481715101 481715627 526 True 651.00 651 88.9940 1675 2200 1 chr1D.!!$R1 525
10 TraesCS7D01G033200 chr5B 711622116 711622640 524 True 643.00 643 88.8470 1675 2200 1 chr5B.!!$R1 525
11 TraesCS7D01G033200 chr6B 564274453 564274976 523 True 603.00 603 87.4760 1676 2200 1 chr6B.!!$R1 524
12 TraesCS7D01G033200 chr2A 657840180 657840696 516 False 584.00 584 87.1150 1675 2191 1 chr2A.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 242 0.107456 CCGATGGTCCTAGCAGCAAT 59.893 55.0 0.0 0.0 30.42 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2116 0.039437 ACGCGACTACTGACCTGTTG 60.039 55.0 15.93 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.985877 CGATGCTCCTTGCCAACA 58.014 55.556 0.00 0.00 42.00 3.33
18 19 2.485677 CGATGCTCCTTGCCAACAT 58.514 52.632 0.00 0.00 42.00 2.71
44 46 1.352352 CCCCTGACACTGAAATGAGGT 59.648 52.381 0.00 0.00 0.00 3.85
51 53 3.206150 ACACTGAAATGAGGTGTGTGTC 58.794 45.455 0.00 0.00 41.75 3.67
62 64 2.028484 GTGTGTCGACCTTCGCCA 59.972 61.111 14.12 0.00 40.21 5.69
69 71 0.676466 TCGACCTTCGCCAATTGCAT 60.676 50.000 0.00 0.00 40.21 3.96
82 84 3.446161 CCAATTGCATCTCCATTGTGTCT 59.554 43.478 0.00 0.00 0.00 3.41
85 87 2.715046 TGCATCTCCATTGTGTCTTCC 58.285 47.619 0.00 0.00 0.00 3.46
119 121 6.057533 TCTGATAAGCTGAATAACATGTGGG 58.942 40.000 0.00 0.00 0.00 4.61
126 128 4.732784 CTGAATAACATGTGGGGTTTTCG 58.267 43.478 0.00 0.00 0.00 3.46
162 164 6.834168 TTTCCTTCAGGTTTTTATGCTAGG 57.166 37.500 0.00 0.00 36.34 3.02
166 168 3.886123 TCAGGTTTTTATGCTAGGCCTC 58.114 45.455 9.68 0.00 0.00 4.70
193 195 2.753029 AGCCCACTGAACAGGAGC 59.247 61.111 6.76 5.96 0.00 4.70
197 199 1.915141 CCCACTGAACAGGAGCATTT 58.085 50.000 6.76 0.00 0.00 2.32
200 209 2.507484 CACTGAACAGGAGCATTTGGA 58.493 47.619 6.76 0.00 0.00 3.53
215 228 2.051334 TTGGACTTAATGGGCCGATG 57.949 50.000 0.00 0.00 0.00 3.84
217 230 0.182775 GGACTTAATGGGCCGATGGT 59.817 55.000 0.00 0.86 0.00 3.55
229 242 0.107456 CCGATGGTCCTAGCAGCAAT 59.893 55.000 0.00 0.00 30.42 3.56
239 252 3.888323 TCCTAGCAGCAATGACAACAAAA 59.112 39.130 0.00 0.00 0.00 2.44
275 288 1.279496 AGTTCCATAGCACCAGAGCA 58.721 50.000 0.00 0.00 36.85 4.26
293 306 3.316501 AGCATAGCTCCAAGAGAATCCT 58.683 45.455 0.00 0.00 30.62 3.24
343 356 8.759641 CAGTCATGTCATGCTCTAGTAATTTAC 58.240 37.037 8.03 0.00 0.00 2.01
373 386 4.290155 CACAAGACCATTTCAAGAAACCG 58.710 43.478 0.00 0.00 32.51 4.44
380 393 8.398878 AGACCATTTCAAGAAACCGTTAAATA 57.601 30.769 0.00 0.00 32.51 1.40
409 422 7.939782 TGAAGAACAAGTATTTGATGCAAAGA 58.060 30.769 4.81 0.00 36.76 2.52
423 436 8.865590 TTGATGCAAAGATTGTTGATATGATG 57.134 30.769 0.00 0.00 0.00 3.07
428 441 7.283807 TGCAAAGATTGTTGATATGATGTAGCT 59.716 33.333 0.00 0.00 0.00 3.32
429 442 8.133627 GCAAAGATTGTTGATATGATGTAGCTT 58.866 33.333 0.00 0.00 0.00 3.74
500 515 6.719829 AGTGGAGGTCAACCCTTAATTTAAAG 59.280 38.462 0.00 0.00 46.51 1.85
506 521 8.585018 AGGTCAACCCTTAATTTAAAGTGAATG 58.415 33.333 0.00 0.00 42.73 2.67
581 596 9.162764 TGAACAGAATACTTAAAATGCTACTCC 57.837 33.333 0.00 0.00 0.00 3.85
582 597 9.162764 GAACAGAATACTTAAAATGCTACTCCA 57.837 33.333 0.00 0.00 0.00 3.86
583 598 8.494016 ACAGAATACTTAAAATGCTACTCCAC 57.506 34.615 0.00 0.00 0.00 4.02
663 687 9.378551 TGATATATACGAGATTACAAAATGGGC 57.621 33.333 0.00 0.00 0.00 5.36
664 688 8.732746 ATATATACGAGATTACAAAATGGGCC 57.267 34.615 0.00 0.00 0.00 5.80
764 788 4.633126 GCATGACAGTCAGATAACATGTGT 59.367 41.667 9.64 0.00 37.83 3.72
885 912 9.436957 CACTTTACAAAAGCTATCTAGGAAAGA 57.563 33.333 13.11 0.00 39.02 2.52
1037 1066 2.438614 CGCTCTCCTCACCCTCGA 60.439 66.667 0.00 0.00 0.00 4.04
1272 1304 1.045350 AGCTAGCGCAGATCCCAGAA 61.045 55.000 11.47 0.00 39.10 3.02
1347 1379 3.677648 CAACAGCAGTGGCAGGGC 61.678 66.667 2.25 2.25 44.61 5.19
1352 1384 2.045045 GCAGTGGCAGGGCATGTA 60.045 61.111 0.00 0.00 40.72 2.29
1357 1389 2.830370 GGCAGGGCATGTACCAGC 60.830 66.667 14.58 14.58 0.00 4.85
1364 1396 2.676608 CATGTACCAGCCCCAGCA 59.323 61.111 0.00 0.00 43.56 4.41
1365 1397 1.001020 CATGTACCAGCCCCAGCAA 60.001 57.895 0.00 0.00 43.56 3.91
1388 1420 1.693062 AGCTCCGCTTGAGATCATGAT 59.307 47.619 8.25 8.25 44.42 2.45
1462 1518 1.613317 CCAGGTGTAGCGGTGGATGA 61.613 60.000 0.00 0.00 31.04 2.92
1471 1527 0.037326 GCGGTGGATGAGTCTGTGAA 60.037 55.000 0.00 0.00 0.00 3.18
1475 1531 3.529533 GGTGGATGAGTCTGTGAATCAG 58.470 50.000 4.18 0.00 39.93 2.90
1477 1533 4.160439 GGTGGATGAGTCTGTGAATCAGTA 59.840 45.833 4.18 0.00 39.93 2.74
1478 1534 5.337571 GGTGGATGAGTCTGTGAATCAGTAA 60.338 44.000 4.18 0.00 39.93 2.24
1479 1535 5.809562 GTGGATGAGTCTGTGAATCAGTAAG 59.190 44.000 4.18 0.00 39.93 2.34
1480 1536 5.716703 TGGATGAGTCTGTGAATCAGTAAGA 59.283 40.000 4.18 0.00 39.93 2.10
1481 1537 6.127507 TGGATGAGTCTGTGAATCAGTAAGAG 60.128 42.308 4.18 0.00 39.93 2.85
1482 1538 6.127479 GGATGAGTCTGTGAATCAGTAAGAGT 60.127 42.308 4.18 0.00 39.93 3.24
1484 1540 4.815269 AGTCTGTGAATCAGTAAGAGTGC 58.185 43.478 0.00 0.00 43.97 4.40
1514 1614 7.200455 ACTAGTTGCAACTTGGAAATAACAAC 58.800 34.615 35.20 1.29 40.37 3.32
1530 1630 4.654091 AACAACCAACATCTGTTTCTGG 57.346 40.909 0.00 0.00 35.83 3.86
1541 1641 7.636150 ACATCTGTTTCTGGATGAATAAAGG 57.364 36.000 9.47 0.00 41.05 3.11
1588 1688 9.788889 ATGTCTTGCATGATAGATGAAATCTAA 57.211 29.630 5.49 0.00 46.59 2.10
1600 1700 6.209129 GATGAAATCTAAGACGCATCTGAC 57.791 41.667 0.00 0.00 41.17 3.51
1601 1701 5.330455 TGAAATCTAAGACGCATCTGACT 57.670 39.130 0.00 0.00 34.48 3.41
1602 1702 5.105063 TGAAATCTAAGACGCATCTGACTG 58.895 41.667 0.00 0.00 34.48 3.51
1603 1703 4.991153 AATCTAAGACGCATCTGACTGA 57.009 40.909 0.00 0.00 34.48 3.41
1604 1704 4.991153 ATCTAAGACGCATCTGACTGAA 57.009 40.909 0.00 0.00 34.48 3.02
1605 1705 4.098055 TCTAAGACGCATCTGACTGAAC 57.902 45.455 0.00 0.00 34.48 3.18
1606 1706 3.759086 TCTAAGACGCATCTGACTGAACT 59.241 43.478 0.00 0.00 34.48 3.01
1607 1707 2.360553 AGACGCATCTGACTGAACTG 57.639 50.000 0.00 0.00 32.29 3.16
1608 1708 1.067283 AGACGCATCTGACTGAACTGG 60.067 52.381 0.00 0.00 32.29 4.00
1609 1709 0.969149 ACGCATCTGACTGAACTGGA 59.031 50.000 0.00 0.00 0.00 3.86
1610 1710 1.337260 ACGCATCTGACTGAACTGGAC 60.337 52.381 0.00 0.00 0.00 4.02
1611 1711 1.731720 GCATCTGACTGAACTGGACC 58.268 55.000 0.00 0.00 0.00 4.46
1612 1712 1.002430 GCATCTGACTGAACTGGACCA 59.998 52.381 0.00 0.00 0.00 4.02
1613 1713 2.355513 GCATCTGACTGAACTGGACCAT 60.356 50.000 0.00 0.00 0.00 3.55
1614 1714 3.529533 CATCTGACTGAACTGGACCATC 58.470 50.000 0.00 0.00 0.00 3.51
1615 1715 2.608623 TCTGACTGAACTGGACCATCA 58.391 47.619 0.00 0.00 0.00 3.07
1616 1716 3.176411 TCTGACTGAACTGGACCATCAT 58.824 45.455 0.00 0.00 0.00 2.45
1617 1717 3.196469 TCTGACTGAACTGGACCATCATC 59.804 47.826 0.00 0.00 0.00 2.92
1618 1718 2.905736 TGACTGAACTGGACCATCATCA 59.094 45.455 0.00 0.00 0.00 3.07
1619 1719 3.520721 TGACTGAACTGGACCATCATCAT 59.479 43.478 0.00 0.00 0.00 2.45
1620 1720 4.716287 TGACTGAACTGGACCATCATCATA 59.284 41.667 0.00 0.00 0.00 2.15
1621 1721 5.028549 ACTGAACTGGACCATCATCATAC 57.971 43.478 0.00 0.00 0.00 2.39
1622 1722 4.718774 ACTGAACTGGACCATCATCATACT 59.281 41.667 0.00 0.00 0.00 2.12
1623 1723 5.163364 ACTGAACTGGACCATCATCATACTC 60.163 44.000 0.00 0.00 0.00 2.59
1624 1724 4.964897 TGAACTGGACCATCATCATACTCT 59.035 41.667 0.00 0.00 0.00 3.24
1625 1725 4.952071 ACTGGACCATCATCATACTCTG 57.048 45.455 0.00 0.00 0.00 3.35
1626 1726 4.293494 ACTGGACCATCATCATACTCTGT 58.707 43.478 0.00 0.00 0.00 3.41
1627 1727 4.100653 ACTGGACCATCATCATACTCTGTG 59.899 45.833 0.00 0.00 0.00 3.66
1628 1728 3.181462 TGGACCATCATCATACTCTGTGC 60.181 47.826 0.00 0.00 0.00 4.57
1629 1729 3.397482 GACCATCATCATACTCTGTGCC 58.603 50.000 0.00 0.00 0.00 5.01
1630 1730 3.044156 ACCATCATCATACTCTGTGCCT 58.956 45.455 0.00 0.00 0.00 4.75
1631 1731 3.070734 ACCATCATCATACTCTGTGCCTC 59.929 47.826 0.00 0.00 0.00 4.70
1632 1732 3.070590 CCATCATCATACTCTGTGCCTCA 59.929 47.826 0.00 0.00 0.00 3.86
1633 1733 4.443881 CCATCATCATACTCTGTGCCTCAA 60.444 45.833 0.00 0.00 0.00 3.02
1634 1734 4.824479 TCATCATACTCTGTGCCTCAAA 57.176 40.909 0.00 0.00 0.00 2.69
1635 1735 5.164620 TCATCATACTCTGTGCCTCAAAA 57.835 39.130 0.00 0.00 0.00 2.44
1636 1736 5.181009 TCATCATACTCTGTGCCTCAAAAG 58.819 41.667 0.00 0.00 0.00 2.27
1637 1737 4.623932 TCATACTCTGTGCCTCAAAAGT 57.376 40.909 0.00 0.00 0.00 2.66
1638 1738 4.973168 TCATACTCTGTGCCTCAAAAGTT 58.027 39.130 0.00 0.00 0.00 2.66
1639 1739 5.376625 TCATACTCTGTGCCTCAAAAGTTT 58.623 37.500 0.00 0.00 0.00 2.66
1640 1740 6.530120 TCATACTCTGTGCCTCAAAAGTTTA 58.470 36.000 0.00 0.00 0.00 2.01
1641 1741 6.426937 TCATACTCTGTGCCTCAAAAGTTTAC 59.573 38.462 0.00 0.00 0.00 2.01
1642 1742 4.523083 ACTCTGTGCCTCAAAAGTTTACA 58.477 39.130 0.00 0.00 0.00 2.41
1643 1743 4.576463 ACTCTGTGCCTCAAAAGTTTACAG 59.424 41.667 7.38 7.38 36.35 2.74
1644 1744 3.315191 TCTGTGCCTCAAAAGTTTACAGC 59.685 43.478 8.47 2.18 35.33 4.40
1645 1745 3.020274 TGTGCCTCAAAAGTTTACAGCA 58.980 40.909 0.00 0.00 0.00 4.41
1646 1746 3.636300 TGTGCCTCAAAAGTTTACAGCAT 59.364 39.130 6.00 0.00 0.00 3.79
1647 1747 3.983344 GTGCCTCAAAAGTTTACAGCATG 59.017 43.478 6.00 0.00 46.00 4.06
1648 1748 3.005684 TGCCTCAAAAGTTTACAGCATGG 59.994 43.478 0.00 0.00 43.62 3.66
1649 1749 3.255642 GCCTCAAAAGTTTACAGCATGGA 59.744 43.478 0.00 0.00 43.62 3.41
1650 1750 4.616835 GCCTCAAAAGTTTACAGCATGGAG 60.617 45.833 0.00 0.00 43.62 3.86
1651 1751 4.761739 CCTCAAAAGTTTACAGCATGGAGA 59.238 41.667 0.00 0.00 43.62 3.71
1652 1752 5.106396 CCTCAAAAGTTTACAGCATGGAGAG 60.106 44.000 0.00 0.00 43.62 3.20
1653 1753 5.620206 TCAAAAGTTTACAGCATGGAGAGA 58.380 37.500 0.00 0.00 43.62 3.10
1654 1754 5.702670 TCAAAAGTTTACAGCATGGAGAGAG 59.297 40.000 0.00 0.00 43.62 3.20
1655 1755 5.489792 AAAGTTTACAGCATGGAGAGAGA 57.510 39.130 0.00 0.00 43.62 3.10
1656 1756 4.734398 AGTTTACAGCATGGAGAGAGAG 57.266 45.455 0.00 0.00 43.62 3.20
1657 1757 4.348486 AGTTTACAGCATGGAGAGAGAGA 58.652 43.478 0.00 0.00 43.62 3.10
1658 1758 4.402155 AGTTTACAGCATGGAGAGAGAGAG 59.598 45.833 0.00 0.00 43.62 3.20
1659 1759 2.824689 ACAGCATGGAGAGAGAGAGA 57.175 50.000 0.00 0.00 43.62 3.10
1660 1760 2.658285 ACAGCATGGAGAGAGAGAGAG 58.342 52.381 0.00 0.00 43.62 3.20
1661 1761 2.025037 ACAGCATGGAGAGAGAGAGAGT 60.025 50.000 0.00 0.00 43.62 3.24
1662 1762 3.201930 ACAGCATGGAGAGAGAGAGAGTA 59.798 47.826 0.00 0.00 43.62 2.59
1663 1763 3.565482 CAGCATGGAGAGAGAGAGAGTAC 59.435 52.174 0.00 0.00 0.00 2.73
1664 1764 3.201930 AGCATGGAGAGAGAGAGAGTACA 59.798 47.826 0.00 0.00 0.00 2.90
1665 1765 4.141181 AGCATGGAGAGAGAGAGAGTACAT 60.141 45.833 0.00 0.00 0.00 2.29
1666 1766 4.022935 GCATGGAGAGAGAGAGAGTACATG 60.023 50.000 0.00 0.00 37.00 3.21
1667 1767 5.375773 CATGGAGAGAGAGAGAGTACATGA 58.624 45.833 0.00 0.00 36.26 3.07
1668 1768 5.443230 TGGAGAGAGAGAGAGTACATGAA 57.557 43.478 0.00 0.00 0.00 2.57
1669 1769 5.436175 TGGAGAGAGAGAGAGTACATGAAG 58.564 45.833 0.00 0.00 0.00 3.02
1670 1770 5.190726 TGGAGAGAGAGAGAGTACATGAAGA 59.809 44.000 0.00 0.00 0.00 2.87
1671 1771 6.119536 GGAGAGAGAGAGAGTACATGAAGAA 58.880 44.000 0.00 0.00 0.00 2.52
1672 1772 6.260936 GGAGAGAGAGAGAGTACATGAAGAAG 59.739 46.154 0.00 0.00 0.00 2.85
1800 1900 5.996513 AGAGAAGGTAAATAGCATCTGCATG 59.003 40.000 4.79 0.00 45.16 4.06
1802 1902 5.530171 AGAAGGTAAATAGCATCTGCATGTG 59.470 40.000 4.79 0.00 45.16 3.21
1813 1913 4.334759 GCATCTGCATGTGTGAACTAGAAT 59.665 41.667 0.00 0.00 41.59 2.40
1851 1951 2.028567 AGACACTAGAGCCAGAAACTGC 60.029 50.000 0.00 0.00 0.00 4.40
1854 1954 1.277557 ACTAGAGCCAGAAACTGCAGG 59.722 52.381 19.93 0.00 0.00 4.85
1920 2021 1.302832 GCACTGGTCTTGGGGTCAG 60.303 63.158 0.00 0.00 0.00 3.51
1973 2074 1.859427 CGACGTCGGGGAAGAAGTCA 61.859 60.000 29.70 0.00 45.50 3.41
2019 2120 0.612744 TGGAGCGTCCATGATCAACA 59.387 50.000 0.00 0.00 42.67 3.33
2034 2135 0.039437 CAACAGGTCAGTAGTCGCGT 60.039 55.000 5.77 0.00 0.00 6.01
2080 2181 0.818296 CCTTCTCCCGTACAGGACTG 59.182 60.000 0.00 0.00 45.00 3.51
2179 2280 2.816087 GCAGCTCAAAGATTGGAACTCA 59.184 45.455 0.00 0.00 0.00 3.41
2196 2297 0.324738 TCAGTGGCGAGAGGGAGATT 60.325 55.000 0.00 0.00 0.00 2.40
2217 2430 0.904865 TCCAGCAGTCGAAGGGATGT 60.905 55.000 0.00 0.00 0.00 3.06
2221 2434 1.811266 CAGTCGAAGGGATGTGCCG 60.811 63.158 0.00 0.00 37.63 5.69
2234 2447 3.561429 TGCCGTTCGCATTCAGTC 58.439 55.556 0.00 0.00 44.64 3.51
2245 2458 4.207955 TCGCATTCAGTCTCCACTATAGT 58.792 43.478 0.00 0.00 0.00 2.12
2272 2486 4.090761 TCTTTTCAGCTTCCATGTGACT 57.909 40.909 0.00 0.00 0.00 3.41
2282 2496 5.581085 AGCTTCCATGTGACTTTTCGTATAC 59.419 40.000 0.00 0.00 0.00 1.47
2287 2501 5.642063 CCATGTGACTTTTCGTATACCAGTT 59.358 40.000 0.00 0.00 0.00 3.16
2388 2605 2.872038 GCGTGAATGTCCCTCTTGTTCT 60.872 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.618680 TCAGTGTCAGGGGCTGCTAT 60.619 55.000 0.00 0.00 0.00 2.97
18 19 0.835971 TTCAGTGTCAGGGGCTGCTA 60.836 55.000 0.00 0.00 0.00 3.49
62 64 4.159135 GGAAGACACAATGGAGATGCAATT 59.841 41.667 0.00 0.00 0.00 2.32
69 71 4.639078 TTGATGGAAGACACAATGGAGA 57.361 40.909 0.00 0.00 0.00 3.71
82 84 7.341030 TCAGCTTATCAGAGAAATTGATGGAA 58.659 34.615 0.00 0.00 36.07 3.53
112 114 2.486592 GAGGTAACGAAAACCCCACATG 59.513 50.000 0.00 0.00 46.39 3.21
119 121 7.823665 AGGAAATATTTGAGGTAACGAAAACC 58.176 34.615 5.17 0.00 46.39 3.27
126 128 7.939784 ACCTGAAGGAAATATTTGAGGTAAC 57.060 36.000 5.17 0.00 38.94 2.50
184 186 5.393461 CCATTAAGTCCAAATGCTCCTGTTC 60.393 44.000 0.00 0.00 33.80 3.18
189 191 2.101415 GCCCATTAAGTCCAAATGCTCC 59.899 50.000 0.00 0.00 33.80 4.70
193 195 2.374184 TCGGCCCATTAAGTCCAAATG 58.626 47.619 0.00 0.00 34.71 2.32
197 199 0.182537 CCATCGGCCCATTAAGTCCA 59.817 55.000 0.00 0.00 0.00 4.02
200 209 0.182775 GGACCATCGGCCCATTAAGT 59.817 55.000 0.00 0.00 0.00 2.24
215 228 1.740025 GTTGTCATTGCTGCTAGGACC 59.260 52.381 21.95 7.65 0.00 4.46
217 230 2.857186 TGTTGTCATTGCTGCTAGGA 57.143 45.000 0.00 0.00 0.00 2.94
287 300 5.393866 TCCCCTTTTATATGCCAAGGATTC 58.606 41.667 9.81 0.00 39.73 2.52
293 306 8.789767 TGATAAAATCCCCTTTTATATGCCAA 57.210 30.769 3.62 0.00 45.67 4.52
343 356 0.956633 AATGGTCTTGTGCTGCTGTG 59.043 50.000 0.00 0.00 0.00 3.66
409 422 8.562892 GCTGTTAAGCTACATCATATCAACAAT 58.437 33.333 0.00 0.00 46.60 2.71
428 441 9.944376 ATAGTTTGTAATCTTCTCTGCTGTTAA 57.056 29.630 0.00 0.00 0.00 2.01
457 470 5.630121 TCCACTCTATGCTTTTTCTGGAAA 58.370 37.500 0.00 0.00 0.00 3.13
463 476 4.579869 TGACCTCCACTCTATGCTTTTTC 58.420 43.478 0.00 0.00 0.00 2.29
506 521 8.050778 TGTAAATCAGATTGTATGGTTTGTCC 57.949 34.615 0.00 0.00 33.23 4.02
555 570 9.162764 GGAGTAGCATTTTAAGTATTCTGTTCA 57.837 33.333 0.00 0.00 0.00 3.18
581 596 6.539324 TCAACGTTTTAGAACTTTGACTGTG 58.461 36.000 12.33 0.00 44.29 3.66
582 597 6.730960 TCAACGTTTTAGAACTTTGACTGT 57.269 33.333 12.33 0.00 44.29 3.55
611 627 1.726791 AGCTGATGTTTTAGACACGCG 59.273 47.619 3.53 3.53 42.04 6.01
663 687 5.076873 TCCAGGTTTTATCCTTTTGTGAGG 58.923 41.667 0.00 0.00 35.37 3.86
664 688 6.660949 AGATCCAGGTTTTATCCTTTTGTGAG 59.339 38.462 0.00 0.00 35.37 3.51
885 912 3.804036 CATGATTTGCTGCATCCCATTT 58.196 40.909 1.84 0.00 0.00 2.32
925 952 7.690454 TGGATGAGGATCTTCTTTGGTATTA 57.310 36.000 6.38 0.00 39.10 0.98
934 963 4.765629 AGGATGATGGATGAGGATCTTCT 58.234 43.478 6.38 0.00 39.10 2.85
1037 1066 2.113139 CAACAGCGTTGGTCCCCT 59.887 61.111 3.74 0.00 0.00 4.79
1272 1304 0.692476 TAGCATGGCACCTGAACTGT 59.308 50.000 0.00 0.00 0.00 3.55
1338 1370 1.750399 CTGGTACATGCCCTGCCAC 60.750 63.158 0.00 0.00 38.20 5.01
1347 1379 1.001020 TTGCTGGGGCTGGTACATG 60.001 57.895 0.00 0.00 38.20 3.21
1352 1384 2.203538 CTTGTTGCTGGGGCTGGT 60.204 61.111 0.00 0.00 39.59 4.00
1388 1420 2.274437 GCAAGATCTGAAGCGACATCA 58.726 47.619 0.00 0.00 0.00 3.07
1447 1503 0.818296 AGACTCATCCACCGCTACAC 59.182 55.000 0.00 0.00 0.00 2.90
1462 1518 8.461898 CAGGCACTCTTACTGATTCACAGACT 62.462 46.154 0.00 0.00 43.49 3.24
1471 1527 5.511363 ACTAGTACAGGCACTCTTACTGAT 58.489 41.667 0.00 0.00 34.60 2.90
1475 1531 4.174762 GCAACTAGTACAGGCACTCTTAC 58.825 47.826 0.00 0.00 34.60 2.34
1477 1533 2.632996 TGCAACTAGTACAGGCACTCTT 59.367 45.455 0.00 0.00 34.60 2.85
1478 1534 2.248248 TGCAACTAGTACAGGCACTCT 58.752 47.619 0.00 0.00 34.60 3.24
1479 1535 2.737252 GTTGCAACTAGTACAGGCACTC 59.263 50.000 22.36 4.93 34.60 3.51
1480 1536 2.368875 AGTTGCAACTAGTACAGGCACT 59.631 45.455 30.25 1.16 37.52 4.40
1481 1537 2.767505 AGTTGCAACTAGTACAGGCAC 58.232 47.619 30.25 0.00 37.52 5.01
1482 1538 3.138304 CAAGTTGCAACTAGTACAGGCA 58.862 45.455 31.31 1.37 38.57 4.75
1484 1540 4.002906 TCCAAGTTGCAACTAGTACAGG 57.997 45.455 31.31 23.02 38.57 4.00
1514 1614 5.909621 ATTCATCCAGAAACAGATGTTGG 57.090 39.130 0.00 0.00 40.63 3.77
1574 1674 7.812191 GTCAGATGCGTCTTAGATTTCATCTAT 59.188 37.037 5.46 2.54 41.23 1.98
1575 1675 7.013750 AGTCAGATGCGTCTTAGATTTCATCTA 59.986 37.037 5.46 8.52 38.71 1.98
1576 1676 5.982516 GTCAGATGCGTCTTAGATTTCATCT 59.017 40.000 5.46 13.82 40.64 2.90
1577 1677 5.982516 AGTCAGATGCGTCTTAGATTTCATC 59.017 40.000 5.46 10.89 30.42 2.92
1578 1678 5.752472 CAGTCAGATGCGTCTTAGATTTCAT 59.248 40.000 5.46 0.00 30.42 2.57
1579 1679 5.105063 CAGTCAGATGCGTCTTAGATTTCA 58.895 41.667 5.46 0.00 30.42 2.69
1580 1680 5.344066 TCAGTCAGATGCGTCTTAGATTTC 58.656 41.667 5.46 0.00 30.42 2.17
1581 1681 5.330455 TCAGTCAGATGCGTCTTAGATTT 57.670 39.130 5.46 0.00 30.42 2.17
1582 1682 4.991153 TCAGTCAGATGCGTCTTAGATT 57.009 40.909 5.46 0.00 30.42 2.40
1583 1683 4.400884 AGTTCAGTCAGATGCGTCTTAGAT 59.599 41.667 5.46 0.00 30.42 1.98
1584 1684 3.759086 AGTTCAGTCAGATGCGTCTTAGA 59.241 43.478 5.46 0.00 30.42 2.10
1585 1685 3.856521 CAGTTCAGTCAGATGCGTCTTAG 59.143 47.826 5.46 0.00 30.42 2.18
1586 1686 3.367395 CCAGTTCAGTCAGATGCGTCTTA 60.367 47.826 5.46 0.00 30.42 2.10
1587 1687 2.611473 CCAGTTCAGTCAGATGCGTCTT 60.611 50.000 5.46 0.00 30.42 3.01
1588 1688 1.067283 CCAGTTCAGTCAGATGCGTCT 60.067 52.381 1.48 1.48 34.14 4.18
1589 1689 1.067565 TCCAGTTCAGTCAGATGCGTC 60.068 52.381 0.00 0.00 0.00 5.19
1590 1690 0.969149 TCCAGTTCAGTCAGATGCGT 59.031 50.000 0.00 0.00 0.00 5.24
1591 1691 1.354040 GTCCAGTTCAGTCAGATGCG 58.646 55.000 0.00 0.00 0.00 4.73
1592 1692 1.002430 TGGTCCAGTTCAGTCAGATGC 59.998 52.381 0.00 0.00 0.00 3.91
1593 1693 3.055602 TGATGGTCCAGTTCAGTCAGATG 60.056 47.826 0.00 0.00 0.00 2.90
1594 1694 3.176411 TGATGGTCCAGTTCAGTCAGAT 58.824 45.455 0.00 0.00 0.00 2.90
1595 1695 2.608623 TGATGGTCCAGTTCAGTCAGA 58.391 47.619 0.00 0.00 0.00 3.27
1596 1696 3.055602 TGATGATGGTCCAGTTCAGTCAG 60.056 47.826 0.00 0.00 0.00 3.51
1597 1697 2.905736 TGATGATGGTCCAGTTCAGTCA 59.094 45.455 0.00 0.00 0.00 3.41
1598 1698 3.616956 TGATGATGGTCCAGTTCAGTC 57.383 47.619 0.00 0.00 0.00 3.51
1599 1699 4.718774 AGTATGATGATGGTCCAGTTCAGT 59.281 41.667 0.00 0.00 0.00 3.41
1600 1700 5.070180 AGAGTATGATGATGGTCCAGTTCAG 59.930 44.000 0.00 0.00 0.00 3.02
1601 1701 4.964897 AGAGTATGATGATGGTCCAGTTCA 59.035 41.667 0.00 0.00 0.00 3.18
1602 1702 5.163364 ACAGAGTATGATGATGGTCCAGTTC 60.163 44.000 0.00 0.00 0.00 3.01
1603 1703 4.718774 ACAGAGTATGATGATGGTCCAGTT 59.281 41.667 0.00 0.00 0.00 3.16
1604 1704 4.100653 CACAGAGTATGATGATGGTCCAGT 59.899 45.833 0.00 0.00 0.00 4.00
1605 1705 4.629092 CACAGAGTATGATGATGGTCCAG 58.371 47.826 0.00 0.00 0.00 3.86
1606 1706 3.181462 GCACAGAGTATGATGATGGTCCA 60.181 47.826 0.00 0.00 0.00 4.02
1607 1707 3.397482 GCACAGAGTATGATGATGGTCC 58.603 50.000 0.00 0.00 0.00 4.46
1608 1708 3.070734 AGGCACAGAGTATGATGATGGTC 59.929 47.826 0.00 0.00 0.00 4.02
1609 1709 3.044156 AGGCACAGAGTATGATGATGGT 58.956 45.455 0.00 0.00 0.00 3.55
1610 1710 3.070590 TGAGGCACAGAGTATGATGATGG 59.929 47.826 0.00 0.00 0.00 3.51
1611 1711 4.332428 TGAGGCACAGAGTATGATGATG 57.668 45.455 0.00 0.00 0.00 3.07
1612 1712 5.363562 TTTGAGGCACAGAGTATGATGAT 57.636 39.130 0.00 0.00 0.00 2.45
1613 1713 4.824479 TTTGAGGCACAGAGTATGATGA 57.176 40.909 0.00 0.00 0.00 2.92
1614 1714 4.940046 ACTTTTGAGGCACAGAGTATGATG 59.060 41.667 0.00 0.00 0.00 3.07
1615 1715 5.171339 ACTTTTGAGGCACAGAGTATGAT 57.829 39.130 0.00 0.00 0.00 2.45
1616 1716 4.623932 ACTTTTGAGGCACAGAGTATGA 57.376 40.909 0.00 0.00 0.00 2.15
1617 1717 5.695851 AAACTTTTGAGGCACAGAGTATG 57.304 39.130 4.13 0.00 0.00 2.39
1618 1718 6.296026 TGTAAACTTTTGAGGCACAGAGTAT 58.704 36.000 4.13 0.00 0.00 2.12
1619 1719 5.676552 TGTAAACTTTTGAGGCACAGAGTA 58.323 37.500 4.13 0.00 0.00 2.59
1620 1720 4.523083 TGTAAACTTTTGAGGCACAGAGT 58.477 39.130 0.00 0.00 0.00 3.24
1621 1721 4.555511 GCTGTAAACTTTTGAGGCACAGAG 60.556 45.833 3.16 0.00 35.12 3.35
1622 1722 3.315191 GCTGTAAACTTTTGAGGCACAGA 59.685 43.478 3.16 0.00 35.12 3.41
1623 1723 3.066621 TGCTGTAAACTTTTGAGGCACAG 59.933 43.478 0.00 0.00 36.01 3.66
1624 1724 3.020274 TGCTGTAAACTTTTGAGGCACA 58.980 40.909 0.00 0.00 0.00 4.57
1625 1725 3.708563 TGCTGTAAACTTTTGAGGCAC 57.291 42.857 0.00 0.00 0.00 5.01
1626 1726 3.005684 CCATGCTGTAAACTTTTGAGGCA 59.994 43.478 0.00 0.00 0.00 4.75
1627 1727 3.255642 TCCATGCTGTAAACTTTTGAGGC 59.744 43.478 0.00 0.00 0.00 4.70
1628 1728 4.761739 TCTCCATGCTGTAAACTTTTGAGG 59.238 41.667 0.00 0.00 0.00 3.86
1629 1729 5.702670 TCTCTCCATGCTGTAAACTTTTGAG 59.297 40.000 0.00 0.00 0.00 3.02
1630 1730 5.620206 TCTCTCCATGCTGTAAACTTTTGA 58.380 37.500 0.00 0.00 0.00 2.69
1631 1731 5.702670 TCTCTCTCCATGCTGTAAACTTTTG 59.297 40.000 0.00 0.00 0.00 2.44
1632 1732 5.869579 TCTCTCTCCATGCTGTAAACTTTT 58.130 37.500 0.00 0.00 0.00 2.27
1633 1733 5.247110 TCTCTCTCTCCATGCTGTAAACTTT 59.753 40.000 0.00 0.00 0.00 2.66
1634 1734 4.774726 TCTCTCTCTCCATGCTGTAAACTT 59.225 41.667 0.00 0.00 0.00 2.66
1635 1735 4.348486 TCTCTCTCTCCATGCTGTAAACT 58.652 43.478 0.00 0.00 0.00 2.66
1636 1736 4.400884 TCTCTCTCTCTCCATGCTGTAAAC 59.599 45.833 0.00 0.00 0.00 2.01
1637 1737 4.604156 TCTCTCTCTCTCCATGCTGTAAA 58.396 43.478 0.00 0.00 0.00 2.01
1638 1738 4.206375 CTCTCTCTCTCTCCATGCTGTAA 58.794 47.826 0.00 0.00 0.00 2.41
1639 1739 3.201930 ACTCTCTCTCTCTCCATGCTGTA 59.798 47.826 0.00 0.00 0.00 2.74
1640 1740 2.025037 ACTCTCTCTCTCTCCATGCTGT 60.025 50.000 0.00 0.00 0.00 4.40
1641 1741 2.658285 ACTCTCTCTCTCTCCATGCTG 58.342 52.381 0.00 0.00 0.00 4.41
1642 1742 3.201930 TGTACTCTCTCTCTCTCCATGCT 59.798 47.826 0.00 0.00 0.00 3.79
1643 1743 3.550820 TGTACTCTCTCTCTCTCCATGC 58.449 50.000 0.00 0.00 0.00 4.06
1644 1744 5.375773 TCATGTACTCTCTCTCTCTCCATG 58.624 45.833 0.00 0.00 0.00 3.66
1645 1745 5.645056 TCATGTACTCTCTCTCTCTCCAT 57.355 43.478 0.00 0.00 0.00 3.41
1646 1746 5.190726 TCTTCATGTACTCTCTCTCTCTCCA 59.809 44.000 0.00 0.00 0.00 3.86
1647 1747 5.680619 TCTTCATGTACTCTCTCTCTCTCC 58.319 45.833 0.00 0.00 0.00 3.71
1648 1748 7.047891 TCTTCTTCATGTACTCTCTCTCTCTC 58.952 42.308 0.00 0.00 0.00 3.20
1649 1749 6.957631 TCTTCTTCATGTACTCTCTCTCTCT 58.042 40.000 0.00 0.00 0.00 3.10
1650 1750 7.283127 ACATCTTCTTCATGTACTCTCTCTCTC 59.717 40.741 0.00 0.00 32.48 3.20
1651 1751 7.118723 ACATCTTCTTCATGTACTCTCTCTCT 58.881 38.462 0.00 0.00 32.48 3.10
1652 1752 7.333528 ACATCTTCTTCATGTACTCTCTCTC 57.666 40.000 0.00 0.00 32.48 3.20
1653 1753 7.363705 CCAACATCTTCTTCATGTACTCTCTCT 60.364 40.741 0.00 0.00 33.12 3.10
1654 1754 6.756074 CCAACATCTTCTTCATGTACTCTCTC 59.244 42.308 0.00 0.00 33.12 3.20
1655 1755 6.438741 TCCAACATCTTCTTCATGTACTCTCT 59.561 38.462 0.00 0.00 33.12 3.10
1656 1756 6.634805 TCCAACATCTTCTTCATGTACTCTC 58.365 40.000 0.00 0.00 33.12 3.20
1657 1757 6.611613 TCCAACATCTTCTTCATGTACTCT 57.388 37.500 0.00 0.00 33.12 3.24
1658 1758 7.672983 TTTCCAACATCTTCTTCATGTACTC 57.327 36.000 0.00 0.00 33.12 2.59
1659 1759 9.911788 ATATTTCCAACATCTTCTTCATGTACT 57.088 29.630 0.00 0.00 33.12 2.73
1660 1760 9.941664 CATATTTCCAACATCTTCTTCATGTAC 57.058 33.333 0.00 0.00 33.12 2.90
1661 1761 9.904198 TCATATTTCCAACATCTTCTTCATGTA 57.096 29.630 0.00 0.00 33.12 2.29
1662 1762 8.812513 TCATATTTCCAACATCTTCTTCATGT 57.187 30.769 0.00 0.00 35.94 3.21
1663 1763 7.861372 GCTCATATTTCCAACATCTTCTTCATG 59.139 37.037 0.00 0.00 0.00 3.07
1664 1764 7.558807 TGCTCATATTTCCAACATCTTCTTCAT 59.441 33.333 0.00 0.00 0.00 2.57
1665 1765 6.885918 TGCTCATATTTCCAACATCTTCTTCA 59.114 34.615 0.00 0.00 0.00 3.02
1666 1766 7.325660 TGCTCATATTTCCAACATCTTCTTC 57.674 36.000 0.00 0.00 0.00 2.87
1667 1767 7.707624 TTGCTCATATTTCCAACATCTTCTT 57.292 32.000 0.00 0.00 0.00 2.52
1668 1768 7.893124 ATTGCTCATATTTCCAACATCTTCT 57.107 32.000 0.00 0.00 0.00 2.85
1669 1769 8.937634 AAATTGCTCATATTTCCAACATCTTC 57.062 30.769 0.00 0.00 0.00 2.87
1670 1770 9.807649 GTAAATTGCTCATATTTCCAACATCTT 57.192 29.630 0.00 0.00 0.00 2.40
1671 1771 8.416329 GGTAAATTGCTCATATTTCCAACATCT 58.584 33.333 0.00 0.00 0.00 2.90
1672 1772 8.196771 TGGTAAATTGCTCATATTTCCAACATC 58.803 33.333 0.00 0.00 0.00 3.06
1712 1812 8.600449 AGTCATGCTTTATCTAGTATTTCTGC 57.400 34.615 0.00 0.00 0.00 4.26
1813 1913 6.782082 AGTGTCTGCTCTAGATATGTTTGA 57.218 37.500 0.00 0.00 37.83 2.69
1851 1951 4.708177 TCTTTCTGTTTGAGGTTCTCCTG 58.292 43.478 0.00 0.00 45.24 3.86
1854 1954 4.130118 TGCTCTTTCTGTTTGAGGTTCTC 58.870 43.478 0.00 0.00 0.00 2.87
1973 2074 0.966920 ACGACCACTTCCTCAACGAT 59.033 50.000 0.00 0.00 0.00 3.73
2015 2116 0.039437 ACGCGACTACTGACCTGTTG 60.039 55.000 15.93 0.00 0.00 3.33
2019 2120 1.135460 GCTTTACGCGACTACTGACCT 60.135 52.381 15.93 0.00 0.00 3.85
2034 2135 0.963225 GGTTTTTGGGGAGCGCTTTA 59.037 50.000 13.26 0.00 0.00 1.85
2080 2181 2.033194 CCGGAACCGCACCTCTTTC 61.033 63.158 7.80 0.00 38.24 2.62
2134 2235 1.330655 ACGATCTTCCACATCCCGCT 61.331 55.000 0.00 0.00 0.00 5.52
2135 2236 0.387929 TACGATCTTCCACATCCCGC 59.612 55.000 0.00 0.00 0.00 6.13
2143 2244 0.179100 GCTGCTGCTACGATCTTCCA 60.179 55.000 8.53 0.00 36.03 3.53
2166 2267 1.347707 TCGCCACTGAGTTCCAATCTT 59.652 47.619 0.00 0.00 0.00 2.40
2179 2280 2.243810 GATAATCTCCCTCTCGCCACT 58.756 52.381 0.00 0.00 0.00 4.00
2196 2297 1.688735 CATCCCTTCGACTGCTGGATA 59.311 52.381 0.00 0.00 34.12 2.59
2200 2301 1.364626 GCACATCCCTTCGACTGCTG 61.365 60.000 0.00 0.00 0.00 4.41
2201 2302 1.078848 GCACATCCCTTCGACTGCT 60.079 57.895 0.00 0.00 0.00 4.24
2202 2303 2.109126 GGCACATCCCTTCGACTGC 61.109 63.158 0.00 0.00 0.00 4.40
2203 2304 1.811266 CGGCACATCCCTTCGACTG 60.811 63.158 0.00 0.00 0.00 3.51
2204 2305 1.827399 AACGGCACATCCCTTCGACT 61.827 55.000 0.00 0.00 0.00 4.18
2205 2306 1.359459 GAACGGCACATCCCTTCGAC 61.359 60.000 0.00 0.00 0.00 4.20
2221 2434 2.086054 AGTGGAGACTGAATGCGAAC 57.914 50.000 0.00 0.00 0.00 3.95
2245 2458 7.867403 GTCACATGGAAGCTGAAAAGATTTTTA 59.133 33.333 0.00 0.00 0.00 1.52
2259 2473 4.946784 ATACGAAAAGTCACATGGAAGC 57.053 40.909 0.00 0.00 0.00 3.86
2265 2479 6.147164 CACAACTGGTATACGAAAAGTCACAT 59.853 38.462 0.00 0.00 0.00 3.21
2272 2486 3.184783 CACGCACAACTGGTATACGAAAA 59.815 43.478 0.00 0.00 0.00 2.29
2282 2496 0.459237 TTTTTGCCACGCACAACTGG 60.459 50.000 0.00 0.00 38.71 4.00
2287 2501 3.181486 TGTCTAAATTTTTGCCACGCACA 60.181 39.130 0.00 0.00 38.71 4.57
2358 2572 1.403780 GGACATTCACGCGTACTCCTT 60.404 52.381 13.44 0.00 0.00 3.36
2364 2578 0.892755 AAGAGGGACATTCACGCGTA 59.107 50.000 13.44 0.00 0.00 4.42
2388 2605 2.126057 TCCCCACATGTATGAGCATGA 58.874 47.619 12.27 0.00 46.65 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.