Multiple sequence alignment - TraesCS7D01G033000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G033000 chr7D 100.000 6561 0 0 1001 7561 17118667 17125227 0.000000e+00 12116
1 TraesCS7D01G033000 chr7D 95.313 5910 259 16 1164 7069 16763783 16757888 0.000000e+00 9363
2 TraesCS7D01G033000 chr7D 95.176 3731 166 13 1001 4725 16992103 16995825 0.000000e+00 5880
3 TraesCS7D01G033000 chr7D 100.000 651 0 0 1 651 17117667 17118317 0.000000e+00 1203
4 TraesCS7D01G033000 chr7D 96.512 430 14 1 7064 7492 16996255 16996684 0.000000e+00 710
5 TraesCS7D01G033000 chr7D 94.131 426 22 2 7070 7492 16757848 16757423 0.000000e+00 645
6 TraesCS7D01G033000 chr7D 93.797 403 24 1 250 651 16991552 16991954 8.390000e-169 604
7 TraesCS7D01G033000 chr7D 97.329 337 7 2 6633 6969 16995822 16996156 8.510000e-159 571
8 TraesCS7D01G033000 chr7D 97.333 75 2 0 7487 7561 16757138 16757064 2.210000e-25 128
9 TraesCS7D01G033000 chr7D 97.183 71 2 0 6999 7069 16996151 16996221 3.710000e-23 121
10 TraesCS7D01G033000 chr7D 95.946 74 3 0 7488 7561 16996985 16997058 3.710000e-23 121
11 TraesCS7D01G033000 chr7A 93.977 6077 300 24 1001 7069 16423733 16429751 0.000000e+00 9134
12 TraesCS7D01G033000 chr7A 94.571 5471 263 21 1001 6464 16311633 16317076 0.000000e+00 8427
13 TraesCS7D01G033000 chr7A 95.527 4002 138 17 1001 4988 16378559 16382533 0.000000e+00 6360
14 TraesCS7D01G033000 chr7A 92.972 2419 155 8 4382 6790 15822539 15820126 0.000000e+00 3511
15 TraesCS7D01G033000 chr7A 91.430 1587 124 9 2811 4391 15834333 15832753 0.000000e+00 2167
16 TraesCS7D01G033000 chr7A 94.294 999 35 4 6072 7069 16393096 16394073 0.000000e+00 1509
17 TraesCS7D01G033000 chr7A 96.006 651 25 1 1 650 16377781 16378431 0.000000e+00 1057
18 TraesCS7D01G033000 chr7A 92.791 652 40 4 1 651 16422950 16423595 0.000000e+00 937
19 TraesCS7D01G033000 chr7A 93.189 602 34 4 1 600 16310599 16311195 0.000000e+00 878
20 TraesCS7D01G033000 chr7A 91.469 422 30 1 7071 7492 16394114 16394529 6.580000e-160 575
21 TraesCS7D01G033000 chr7A 89.450 436 32 3 7064 7492 16429785 16430213 8.630000e-149 538
22 TraesCS7D01G033000 chr7A 89.070 430 36 5 7070 7490 15819815 15819388 2.420000e-144 523
23 TraesCS7D01G033000 chr7A 96.617 266 9 0 7064 7329 16317635 16317900 6.960000e-120 442
24 TraesCS7D01G033000 chr7A 88.699 292 25 4 4 295 15837170 15836887 4.340000e-92 350
25 TraesCS7D01G033000 chr7A 97.436 195 5 0 6875 7069 16317407 16317601 4.370000e-87 333
26 TraesCS7D01G033000 chr7A 97.333 75 2 0 7487 7561 16431826 16431900 2.210000e-25 128
27 TraesCS7D01G033000 chr7A 96.000 75 3 0 7487 7561 15791554 15791480 1.030000e-23 122
28 TraesCS7D01G033000 chr4A 94.454 5914 292 26 1167 7069 717263574 717257686 0.000000e+00 9071
29 TraesCS7D01G033000 chr4A 94.201 5535 289 17 1165 6690 717749943 717755454 0.000000e+00 8414
30 TraesCS7D01G033000 chr4A 94.505 3494 175 7 3454 6946 717803039 717806516 0.000000e+00 5373
31 TraesCS7D01G033000 chr4A 93.598 3499 175 23 3427 6896 717287668 717284190 0.000000e+00 5175
32 TraesCS7D01G033000 chr4A 93.844 3119 149 20 3979 7069 717225661 717222558 0.000000e+00 4656
33 TraesCS7D01G033000 chr4A 93.254 2357 136 18 1108 3455 717800593 717802935 0.000000e+00 3450
34 TraesCS7D01G033000 chr4A 93.958 1837 99 11 1165 2996 717236579 717234750 0.000000e+00 2767
35 TraesCS7D01G033000 chr4A 91.608 429 30 1 7064 7492 717806637 717807059 8.450000e-164 588
36 TraesCS7D01G033000 chr4A 91.395 430 24 2 7070 7492 717222488 717222065 1.830000e-160 577
37 TraesCS7D01G033000 chr4A 90.000 430 27 3 7070 7492 717284171 717283751 6.670000e-150 542
38 TraesCS7D01G033000 chr4A 89.295 383 33 4 1 380 717818123 717818500 2.470000e-129 473
39 TraesCS7D01G033000 chr4A 86.977 430 24 5 7070 7492 717257646 717257242 8.940000e-124 455
40 TraesCS7D01G033000 chr4A 93.156 263 16 2 6808 7069 717755454 717755715 1.190000e-102 385
41 TraesCS7D01G033000 chr4A 91.603 262 15 1 7071 7325 717755785 717756046 9.330000e-94 355
42 TraesCS7D01G033000 chr4A 89.003 291 24 2 1 291 717264174 717263892 3.360000e-93 353
43 TraesCS7D01G033000 chr4A 94.667 75 4 0 7487 7561 717221765 717221691 4.790000e-22 117
44 TraesCS7D01G033000 chr4A 94.667 75 4 0 7487 7561 717256942 717256868 4.790000e-22 117
45 TraesCS7D01G033000 chr4A 94.667 75 4 0 7487 7561 717283451 717283377 4.790000e-22 117
46 TraesCS7D01G033000 chr4A 94.667 75 4 0 7487 7561 717756558 717756632 4.790000e-22 117
47 TraesCS7D01G033000 chr4A 93.590 78 5 0 6992 7069 717806526 717806603 4.790000e-22 117
48 TraesCS7D01G033000 chr4A 94.667 75 4 0 7487 7561 717807359 717807433 4.790000e-22 117
49 TraesCS7D01G033000 chr7B 93.218 3819 209 26 1001 4796 655805329 655809120 0.000000e+00 5572
50 TraesCS7D01G033000 chr7B 94.707 2286 114 6 4788 7069 655811491 655813773 0.000000e+00 3544
51 TraesCS7D01G033000 chr7B 91.871 652 47 3 1 651 655706892 655707538 0.000000e+00 905
52 TraesCS7D01G033000 chr7B 91.258 652 50 4 1 651 655749433 655750078 0.000000e+00 881
53 TraesCS7D01G033000 chr7B 91.892 592 41 4 61 651 655804610 655805195 0.000000e+00 821
54 TraesCS7D01G033000 chr7B 87.558 434 43 4 7064 7490 655813810 655814239 6.820000e-135 492
55 TraesCS7D01G033000 chr7B 92.547 322 22 1 330 651 655688814 655689133 1.920000e-125 460
56 TraesCS7D01G033000 chr7B 92.357 314 24 0 338 651 655662698 655663011 1.500000e-121 448


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G033000 chr7D 17117667 17125227 7560 False 6659.500000 12116 100.000000 1 7561 2 chr7D.!!$F2 7560
1 TraesCS7D01G033000 chr7D 16757064 16763783 6719 True 3378.666667 9363 95.592333 1164 7561 3 chr7D.!!$R1 6397
2 TraesCS7D01G033000 chr7D 16991552 16997058 5506 False 1334.500000 5880 95.990500 250 7561 6 chr7D.!!$F1 7311
3 TraesCS7D01G033000 chr7A 16377781 16382533 4752 False 3708.500000 6360 95.766500 1 4988 2 chr7A.!!$F2 4987
4 TraesCS7D01G033000 chr7A 16422950 16431900 8950 False 2684.250000 9134 93.387750 1 7561 4 chr7A.!!$F4 7560
5 TraesCS7D01G033000 chr7A 16310599 16317900 7301 False 2520.000000 8427 95.453250 1 7329 4 chr7A.!!$F1 7328
6 TraesCS7D01G033000 chr7A 15819388 15822539 3151 True 2017.000000 3511 91.021000 4382 7490 2 chr7A.!!$R2 3108
7 TraesCS7D01G033000 chr7A 15832753 15837170 4417 True 1258.500000 2167 90.064500 4 4391 2 chr7A.!!$R3 4387
8 TraesCS7D01G033000 chr7A 16393096 16394529 1433 False 1042.000000 1509 92.881500 6072 7492 2 chr7A.!!$F3 1420
9 TraesCS7D01G033000 chr4A 717234750 717236579 1829 True 2767.000000 2767 93.958000 1165 2996 1 chr4A.!!$R1 1831
10 TraesCS7D01G033000 chr4A 717256868 717264174 7306 True 2499.000000 9071 91.275250 1 7561 4 chr4A.!!$R3 7560
11 TraesCS7D01G033000 chr4A 717749943 717756632 6689 False 2317.750000 8414 93.406750 1165 7561 4 chr4A.!!$F2 6396
12 TraesCS7D01G033000 chr4A 717283377 717287668 4291 True 1944.666667 5175 92.755000 3427 7561 3 chr4A.!!$R4 4134
13 TraesCS7D01G033000 chr4A 717800593 717807433 6840 False 1929.000000 5373 93.524800 1108 7561 5 chr4A.!!$F3 6453
14 TraesCS7D01G033000 chr4A 717221691 717225661 3970 True 1783.333333 4656 93.302000 3979 7561 3 chr4A.!!$R2 3582
15 TraesCS7D01G033000 chr7B 655804610 655814239 9629 False 2607.250000 5572 91.843750 61 7490 4 chr7B.!!$F5 7429
16 TraesCS7D01G033000 chr7B 655706892 655707538 646 False 905.000000 905 91.871000 1 651 1 chr7B.!!$F3 650
17 TraesCS7D01G033000 chr7B 655749433 655750078 645 False 881.000000 881 91.258000 1 651 1 chr7B.!!$F4 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 104 0.036732 GGGAGCACCTCACATTGACA 59.963 55.000 0.00 0.00 33.47 3.58 F
162 167 0.179073 AACACGCACAACTCTCAGCT 60.179 50.000 0.00 0.00 0.00 4.24 F
1327 1475 1.002773 GGAAGAACTCGCCCCTGTTTA 59.997 52.381 0.00 0.00 0.00 2.01 F
2166 2333 0.251077 CCTTGCCTTGCCAAGAGAGT 60.251 55.000 5.89 0.00 43.79 3.24 F
2983 3448 0.251653 AGTAGTTCCCTCCAGCGACA 60.252 55.000 0.00 0.00 0.00 4.35 F
3219 3688 0.251787 GGCCCCTTATAGCCCCAATG 60.252 60.000 0.00 0.00 43.76 2.82 F
3549 4131 1.215173 CCCTTGCCCTTACCATCATGA 59.785 52.381 0.00 0.00 0.00 3.07 F
5271 8275 0.036010 ATCAACCGGAGCTCCAACAG 60.036 55.000 31.67 18.75 35.14 3.16 F
6200 9204 0.464554 GGGTGGCCTTGTCTATCAGC 60.465 60.000 3.32 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1157 0.325296 TCGCCCACACCTAGGATTCT 60.325 55.000 17.98 0.0 0.00 2.40 R
2034 2201 0.999228 CTCGTATGCATCGTCGGCTC 60.999 60.000 0.19 0.0 0.00 4.70 R
2260 2428 0.325296 AGGTGGGGCGATGAGTAAGA 60.325 55.000 0.00 0.0 0.00 2.10 R
3298 3768 0.392706 TTGTGAGACGATGTGGCAGT 59.607 50.000 0.00 0.0 0.00 4.40 R
4603 5214 0.471617 CGGGCCAAGGAAGATGATCT 59.528 55.000 4.39 0.0 0.00 2.75 R
4891 7886 1.216710 GCTCTTGTCTCCACCTCGG 59.783 63.158 0.00 0.0 0.00 4.63 R
5398 8402 1.121407 ATGCGGCATACCAGCTAGGA 61.121 55.000 14.96 0.0 41.22 2.94 R
6362 9367 0.030638 GTGCAGCCAACGACAACAAT 59.969 50.000 0.00 0.0 0.00 2.71 R
7355 10689 2.745100 GTTTCCTCGTTCCGGCCC 60.745 66.667 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 0.036732 GGGAGCACCTCACATTGACA 59.963 55.000 0.00 0.00 33.47 3.58
106 108 0.235665 GCACCTCACATTGACACACG 59.764 55.000 0.00 0.00 0.00 4.49
162 167 0.179073 AACACGCACAACTCTCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
243 248 3.921677 AGCAATTTAAACGAGAGGACGA 58.078 40.909 0.00 0.00 37.03 4.20
514 520 1.529713 GCACCCTTTCCCAAACCGA 60.530 57.895 0.00 0.00 0.00 4.69
518 524 1.758280 ACCCTTTCCCAAACCGAAAAC 59.242 47.619 0.00 0.00 0.00 2.43
1094 1157 3.162666 ACTGTGTTTCCGTCCAGATCTA 58.837 45.455 0.00 0.00 0.00 1.98
1173 1320 1.630878 GTCTGTTTCCCCCAGATCTGT 59.369 52.381 21.11 0.00 40.79 3.41
1327 1475 1.002773 GGAAGAACTCGCCCCTGTTTA 59.997 52.381 0.00 0.00 0.00 2.01
1374 1526 5.970317 TTAGGTGATCTTCGAGTTGTGTA 57.030 39.130 0.00 0.00 0.00 2.90
1452 1606 4.335416 CAATCATTAGACGGGGGCATTAT 58.665 43.478 0.00 0.00 0.00 1.28
1521 1677 2.307098 ACTAGCCAACATCTCAAAGCCT 59.693 45.455 0.00 0.00 0.00 4.58
1660 1816 3.503748 CAGCCAAAGACCTTAACCTTCTG 59.496 47.826 0.00 0.00 0.00 3.02
1763 1922 1.273327 CTGAATTTGAGTTGGGTGGCC 59.727 52.381 0.00 0.00 0.00 5.36
1977 2144 3.513119 TCCAGTTGTCTCTCTGAATCTGG 59.487 47.826 0.00 0.00 38.82 3.86
2034 2201 5.593010 CCTTCCTTGAGTATCTTAACTCCG 58.407 45.833 1.82 0.00 44.40 4.63
2166 2333 0.251077 CCTTGCCTTGCCAAGAGAGT 60.251 55.000 5.89 0.00 43.79 3.24
2197 2364 9.905713 TTAAACATATGCATATCCTAGAATCCC 57.094 33.333 16.46 0.00 0.00 3.85
2260 2428 2.821969 GAGCCAATGGACTTGTGATGTT 59.178 45.455 2.05 0.00 32.61 2.71
2399 2588 3.008375 TCAAGACCTCTTTAGCTGCATGT 59.992 43.478 1.02 0.00 33.11 3.21
2431 2620 3.940209 TTCAATCCAATCCTTGCACAC 57.060 42.857 0.00 0.00 0.00 3.82
2465 2654 5.587844 CCTTTCCATGATCGACTGAAATTCT 59.412 40.000 0.00 0.00 0.00 2.40
2515 2704 7.852971 TGGTAAACCCAAATATTTACTCTCG 57.147 36.000 0.00 0.00 41.50 4.04
2701 2891 2.287608 CGGCCTTGAAGAACAAAAGGTC 60.288 50.000 0.00 0.00 42.13 3.85
2770 2960 3.876309 TTGATAGGCATTAACCTCCCC 57.124 47.619 0.00 0.00 41.50 4.81
2814 3279 1.337167 GCTTTCCCAACCATCTGCAAC 60.337 52.381 0.00 0.00 0.00 4.17
2954 3419 1.821753 AGCTTAGTGCAGTCATCGTCT 59.178 47.619 0.00 0.00 45.94 4.18
2983 3448 0.251653 AGTAGTTCCCTCCAGCGACA 60.252 55.000 0.00 0.00 0.00 4.35
3095 3564 2.595124 TGGAGCATATGTGTGTACCG 57.405 50.000 4.29 0.00 0.00 4.02
3124 3593 6.295249 TCACTCTGAATAAATCACACCAACA 58.705 36.000 0.00 0.00 33.47 3.33
3176 3645 2.916716 GTCACATTGCTTTTGCCATACG 59.083 45.455 0.00 0.00 46.87 3.06
3219 3688 0.251787 GGCCCCTTATAGCCCCAATG 60.252 60.000 0.00 0.00 43.76 2.82
3315 3787 2.159240 TCATACTGCCACATCGTCTCAC 60.159 50.000 0.00 0.00 0.00 3.51
3356 3828 3.244665 ACAAGTGTTCATGAGCATCTGGA 60.245 43.478 15.71 0.00 34.92 3.86
3549 4131 1.215173 CCCTTGCCCTTACCATCATGA 59.785 52.381 0.00 0.00 0.00 3.07
3732 4322 4.405358 AGATCAGGTGACTCATTTCTCCTC 59.595 45.833 0.00 0.00 40.21 3.71
3956 4558 2.347490 CTCGGTGTTCACCAGGGG 59.653 66.667 19.90 5.70 0.00 4.79
4143 4745 1.694169 AATCACCTCCGCCCTCCAT 60.694 57.895 0.00 0.00 0.00 3.41
4155 4758 2.669133 CCTCCATGTTCAGCCCCGA 61.669 63.158 0.00 0.00 0.00 5.14
4234 4843 4.311816 CAAGCAGTTTTGGAGTGATTGT 57.688 40.909 4.23 0.00 45.54 2.71
4311 4920 3.590466 ATTGGTGGTGCAGGGGCTC 62.590 63.158 0.00 0.00 41.91 4.70
4574 5185 1.907739 CCATGGTCCACGGTCAGAT 59.092 57.895 2.57 0.00 0.00 2.90
4891 7886 1.365267 GTATCTACGGGCCCGGAAC 59.635 63.158 44.99 30.16 44.69 3.62
5022 8017 4.336433 TCATGATCGAATTTTCTTGAGGCC 59.664 41.667 0.00 0.00 0.00 5.19
5023 8018 3.684908 TGATCGAATTTTCTTGAGGCCA 58.315 40.909 5.01 0.00 0.00 5.36
5047 8042 4.195416 TGCACATTTCGATGGCAATACTA 58.805 39.130 0.00 0.00 0.00 1.82
5216 8220 7.814107 GCTAAAATTGTTGTCCTTTCATGATCA 59.186 33.333 0.00 0.00 0.00 2.92
5271 8275 0.036010 ATCAACCGGAGCTCCAACAG 60.036 55.000 31.67 18.75 35.14 3.16
5359 8363 2.821969 GCACTCCATCATTGTCCTGTTT 59.178 45.455 0.00 0.00 0.00 2.83
5398 8402 0.608856 TTGCATTCATCGCCACCTGT 60.609 50.000 0.00 0.00 0.00 4.00
5667 8671 3.541996 TGTCATTATGGACGTGCTCAT 57.458 42.857 8.99 4.83 40.72 2.90
5699 8703 1.973812 GCAGCTCCACCTTTCCCAC 60.974 63.158 0.00 0.00 0.00 4.61
5714 8718 1.555075 TCCCACTGAGTCAACTATGCC 59.445 52.381 0.00 0.00 0.00 4.40
5821 8825 1.151450 CCCCTCTTGGTTGCACTGT 59.849 57.895 0.00 0.00 0.00 3.55
5970 8974 6.692849 TGATTGCAGAGATTATATGGACCT 57.307 37.500 0.00 0.00 0.00 3.85
5978 8982 5.477291 AGAGATTATATGGACCTGTACGTGG 59.523 44.000 0.00 3.50 0.00 4.94
5992 8996 5.470777 CCTGTACGTGGTTTCTGGAAATTTA 59.529 40.000 0.00 0.00 32.36 1.40
6200 9204 0.464554 GGGTGGCCTTGTCTATCAGC 60.465 60.000 3.32 0.00 0.00 4.26
6306 9310 2.610833 TCAATGCTTATCTTGCTCGCAG 59.389 45.455 0.00 0.00 33.72 5.18
6310 9314 1.740380 GCTTATCTTGCTCGCAGTCCA 60.740 52.381 0.00 0.00 0.00 4.02
6323 9327 1.340889 GCAGTCCAACATCCTTTGCAA 59.659 47.619 0.00 0.00 0.00 4.08
6338 9342 4.463891 CCTTTGCAACTTGGGTATGAGATT 59.536 41.667 0.00 0.00 0.00 2.40
6351 9356 4.637534 GGTATGAGATTGTGTCATTGCAGT 59.362 41.667 0.00 0.00 36.11 4.40
6356 9361 2.500369 GTGTCATTGCAGTGCGCG 60.500 61.111 11.20 0.00 46.97 6.86
6362 9367 1.963855 ATTGCAGTGCGCGGTTGTA 60.964 52.632 8.83 0.00 46.97 2.41
6392 9397 1.973812 GGCTGCACTTGGGGACTTC 60.974 63.158 0.50 0.00 0.00 3.01
6427 9441 6.042781 TGTTCCTTCTAGTTTCAGCTCCTTTA 59.957 38.462 0.00 0.00 0.00 1.85
6596 9679 6.303839 TGAAACAATACTAGCTTCTTGGGTT 58.696 36.000 0.00 0.00 0.00 4.11
6681 9765 6.952773 TTAGTTATGTGCTTTGTTTGGTCT 57.047 33.333 0.00 0.00 0.00 3.85
6746 9830 3.047796 CAAATGCACACAGAGCTGTTTC 58.952 45.455 0.00 0.00 42.83 2.78
6765 9849 6.680810 TGTTTCCTGAAGCTATGTTCAAATG 58.319 36.000 0.00 0.00 36.01 2.32
6766 9850 6.265196 TGTTTCCTGAAGCTATGTTCAAATGT 59.735 34.615 0.00 0.00 36.01 2.71
6767 9851 7.446931 TGTTTCCTGAAGCTATGTTCAAATGTA 59.553 33.333 0.00 0.00 36.01 2.29
6768 9852 7.615582 TTCCTGAAGCTATGTTCAAATGTAG 57.384 36.000 0.00 0.00 36.01 2.74
6769 9853 6.946340 TCCTGAAGCTATGTTCAAATGTAGA 58.054 36.000 0.00 0.00 36.01 2.59
6770 9854 7.568349 TCCTGAAGCTATGTTCAAATGTAGAT 58.432 34.615 0.00 0.00 36.01 1.98
6771 9855 7.712639 TCCTGAAGCTATGTTCAAATGTAGATC 59.287 37.037 0.00 0.00 36.01 2.75
6772 9856 7.714377 CCTGAAGCTATGTTCAAATGTAGATCT 59.286 37.037 0.00 0.00 36.01 2.75
6773 9857 8.429493 TGAAGCTATGTTCAAATGTAGATCTG 57.571 34.615 5.18 0.00 33.41 2.90
6774 9858 8.043113 TGAAGCTATGTTCAAATGTAGATCTGT 58.957 33.333 5.18 0.00 33.41 3.41
6775 9859 8.798859 AAGCTATGTTCAAATGTAGATCTGTT 57.201 30.769 5.18 0.00 0.00 3.16
6776 9860 8.798859 AGCTATGTTCAAATGTAGATCTGTTT 57.201 30.769 5.18 1.25 0.00 2.83
6777 9861 8.671921 AGCTATGTTCAAATGTAGATCTGTTTG 58.328 33.333 17.24 17.24 33.91 2.93
6778 9862 7.912250 GCTATGTTCAAATGTAGATCTGTTTGG 59.088 37.037 20.45 10.79 33.55 3.28
6779 9863 7.765695 ATGTTCAAATGTAGATCTGTTTGGT 57.234 32.000 20.45 9.27 33.55 3.67
6780 9864 7.581213 TGTTCAAATGTAGATCTGTTTGGTT 57.419 32.000 20.45 2.77 33.55 3.67
6781 9865 7.424803 TGTTCAAATGTAGATCTGTTTGGTTG 58.575 34.615 20.45 11.86 33.55 3.77
6782 9866 7.068103 TGTTCAAATGTAGATCTGTTTGGTTGT 59.932 33.333 20.45 0.00 33.55 3.32
6783 9867 7.202016 TCAAATGTAGATCTGTTTGGTTGTC 57.798 36.000 20.45 0.00 33.55 3.18
6784 9868 5.862924 AATGTAGATCTGTTTGGTTGTCG 57.137 39.130 5.18 0.00 0.00 4.35
6785 9869 4.594123 TGTAGATCTGTTTGGTTGTCGA 57.406 40.909 5.18 0.00 0.00 4.20
6786 9870 4.951254 TGTAGATCTGTTTGGTTGTCGAA 58.049 39.130 5.18 0.00 0.00 3.71
6787 9871 4.748102 TGTAGATCTGTTTGGTTGTCGAAC 59.252 41.667 5.18 0.00 39.62 3.95
6788 9872 3.804036 AGATCTGTTTGGTTGTCGAACA 58.196 40.909 0.00 0.00 44.96 3.18
6789 9873 3.560068 AGATCTGTTTGGTTGTCGAACAC 59.440 43.478 0.00 0.00 42.98 3.32
6790 9874 2.980568 TCTGTTTGGTTGTCGAACACT 58.019 42.857 0.00 0.00 42.98 3.55
6791 9875 2.933906 TCTGTTTGGTTGTCGAACACTC 59.066 45.455 0.00 0.00 42.98 3.51
6792 9876 2.936498 CTGTTTGGTTGTCGAACACTCT 59.064 45.455 0.00 0.00 42.98 3.24
6793 9877 2.675844 TGTTTGGTTGTCGAACACTCTG 59.324 45.455 0.00 0.00 42.98 3.35
6794 9878 2.676342 GTTTGGTTGTCGAACACTCTGT 59.324 45.455 0.00 0.00 39.12 3.41
6795 9879 2.218953 TGGTTGTCGAACACTCTGTC 57.781 50.000 0.00 0.00 33.27 3.51
6796 9880 1.754803 TGGTTGTCGAACACTCTGTCT 59.245 47.619 0.00 0.00 33.27 3.41
6797 9881 2.128035 GGTTGTCGAACACTCTGTCTG 58.872 52.381 0.00 0.00 33.27 3.51
6798 9882 1.523095 GTTGTCGAACACTCTGTCTGC 59.477 52.381 0.00 0.00 31.78 4.26
6799 9883 0.032130 TGTCGAACACTCTGTCTGCC 59.968 55.000 0.00 0.00 0.00 4.85
6800 9884 0.315568 GTCGAACACTCTGTCTGCCT 59.684 55.000 0.00 0.00 0.00 4.75
6801 9885 1.540267 GTCGAACACTCTGTCTGCCTA 59.460 52.381 0.00 0.00 0.00 3.93
6802 9886 1.813178 TCGAACACTCTGTCTGCCTAG 59.187 52.381 0.00 0.00 0.00 3.02
6803 9887 1.542030 CGAACACTCTGTCTGCCTAGT 59.458 52.381 0.00 0.00 0.00 2.57
6804 9888 2.029828 CGAACACTCTGTCTGCCTAGTT 60.030 50.000 0.00 0.00 0.00 2.24
6805 9889 3.553096 CGAACACTCTGTCTGCCTAGTTT 60.553 47.826 0.00 0.00 0.00 2.66
6806 9890 4.381411 GAACACTCTGTCTGCCTAGTTTT 58.619 43.478 0.00 0.00 0.00 2.43
6807 9891 4.423625 ACACTCTGTCTGCCTAGTTTTT 57.576 40.909 0.00 0.00 0.00 1.94
6808 9892 4.130118 ACACTCTGTCTGCCTAGTTTTTG 58.870 43.478 0.00 0.00 0.00 2.44
6809 9893 4.130118 CACTCTGTCTGCCTAGTTTTTGT 58.870 43.478 0.00 0.00 0.00 2.83
6810 9894 4.576463 CACTCTGTCTGCCTAGTTTTTGTT 59.424 41.667 0.00 0.00 0.00 2.83
6811 9895 5.066505 CACTCTGTCTGCCTAGTTTTTGTTT 59.933 40.000 0.00 0.00 0.00 2.83
6812 9896 5.066505 ACTCTGTCTGCCTAGTTTTTGTTTG 59.933 40.000 0.00 0.00 0.00 2.93
6813 9897 4.947388 TCTGTCTGCCTAGTTTTTGTTTGT 59.053 37.500 0.00 0.00 0.00 2.83
6814 9898 4.992688 TGTCTGCCTAGTTTTTGTTTGTG 58.007 39.130 0.00 0.00 0.00 3.33
6815 9899 3.796717 GTCTGCCTAGTTTTTGTTTGTGC 59.203 43.478 0.00 0.00 0.00 4.57
6816 9900 2.788786 CTGCCTAGTTTTTGTTTGTGCG 59.211 45.455 0.00 0.00 0.00 5.34
6817 9901 2.423892 TGCCTAGTTTTTGTTTGTGCGA 59.576 40.909 0.00 0.00 0.00 5.10
6818 9902 3.119459 TGCCTAGTTTTTGTTTGTGCGAA 60.119 39.130 0.00 0.00 0.00 4.70
6819 9903 3.860536 GCCTAGTTTTTGTTTGTGCGAAA 59.139 39.130 0.00 0.00 0.00 3.46
6820 9904 4.506288 GCCTAGTTTTTGTTTGTGCGAAAT 59.494 37.500 0.00 0.00 0.00 2.17
6821 9905 5.688176 GCCTAGTTTTTGTTTGTGCGAAATA 59.312 36.000 0.00 0.00 0.00 1.40
6822 9906 6.364976 GCCTAGTTTTTGTTTGTGCGAAATAT 59.635 34.615 0.00 0.00 0.00 1.28
6823 9907 7.539366 GCCTAGTTTTTGTTTGTGCGAAATATA 59.461 33.333 0.00 0.00 0.00 0.86
6824 9908 9.400638 CCTAGTTTTTGTTTGTGCGAAATATAA 57.599 29.630 0.00 0.00 0.00 0.98
6832 9916 9.855361 TTGTTTGTGCGAAATATAAAATTTGTG 57.145 25.926 0.00 0.00 0.00 3.33
6833 9917 8.006590 TGTTTGTGCGAAATATAAAATTTGTGC 58.993 29.630 0.00 0.00 0.00 4.57
6834 9918 7.881643 TTGTGCGAAATATAAAATTTGTGCT 57.118 28.000 0.00 0.00 0.00 4.40
6835 9919 7.275697 TGTGCGAAATATAAAATTTGTGCTG 57.724 32.000 0.00 0.00 0.00 4.41
6836 9920 7.087007 TGTGCGAAATATAAAATTTGTGCTGA 58.913 30.769 0.00 0.00 0.00 4.26
6837 9921 7.596621 TGTGCGAAATATAAAATTTGTGCTGAA 59.403 29.630 0.00 0.00 0.00 3.02
6838 9922 8.594687 GTGCGAAATATAAAATTTGTGCTGAAT 58.405 29.630 0.00 0.00 0.00 2.57
6839 9923 8.593842 TGCGAAATATAAAATTTGTGCTGAATG 58.406 29.630 0.00 0.00 0.00 2.67
6840 9924 7.580165 GCGAAATATAAAATTTGTGCTGAATGC 59.420 33.333 0.00 0.00 43.25 3.56
6865 9949 8.277270 CACATATGCTGCTTATATGTTTGTTG 57.723 34.615 17.90 7.55 44.92 3.33
6866 9950 8.130469 CACATATGCTGCTTATATGTTTGTTGA 58.870 33.333 17.90 0.00 44.92 3.18
6867 9951 8.131100 ACATATGCTGCTTATATGTTTGTTGAC 58.869 33.333 15.82 0.00 44.92 3.18
6868 9952 6.764308 ATGCTGCTTATATGTTTGTTGACT 57.236 33.333 0.00 0.00 0.00 3.41
6869 9953 5.941733 TGCTGCTTATATGTTTGTTGACTG 58.058 37.500 0.00 0.00 0.00 3.51
6870 9954 5.704978 TGCTGCTTATATGTTTGTTGACTGA 59.295 36.000 0.00 0.00 0.00 3.41
6871 9955 6.206438 TGCTGCTTATATGTTTGTTGACTGAA 59.794 34.615 0.00 0.00 0.00 3.02
6872 9956 6.524586 GCTGCTTATATGTTTGTTGACTGAAC 59.475 38.462 0.00 0.00 34.84 3.18
6873 9957 7.573843 GCTGCTTATATGTTTGTTGACTGAACT 60.574 37.037 0.00 0.00 35.37 3.01
6874 9958 8.165239 TGCTTATATGTTTGTTGACTGAACTT 57.835 30.769 0.00 0.00 35.37 2.66
7167 10438 9.143155 GAAATAAAACATATGGGTCCCTTGTAT 57.857 33.333 10.00 2.53 0.00 2.29
7174 10445 0.323087 GGGTCCCTTGTATTTGCCGT 60.323 55.000 0.00 0.00 0.00 5.68
7175 10446 0.808755 GGTCCCTTGTATTTGCCGTG 59.191 55.000 0.00 0.00 0.00 4.94
7355 10689 0.595053 ACAGCCGTAAGATCATCGCG 60.595 55.000 0.00 0.00 43.02 5.87
7500 12453 3.445096 CAGCCCAAGGTTTTATCTTCCTG 59.555 47.826 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 3.047877 GCTAGCAAACGCCCGTGT 61.048 61.111 10.63 0.00 0.00 4.49
106 108 3.865830 GCGAGCTAGCAAACGCCC 61.866 66.667 29.46 13.46 44.27 6.13
186 191 2.121963 TGGGCCCACTTCTCACCT 60.122 61.111 24.45 0.00 0.00 4.00
243 248 4.141620 CCTGCATACCACAATAAGACCTCT 60.142 45.833 0.00 0.00 0.00 3.69
310 316 0.846870 AGGAAGTTAGCAAGGGCCCT 60.847 55.000 22.28 22.28 42.56 5.19
514 520 5.750067 TCGCTTTTCGACTAGTTGTAGTTTT 59.250 36.000 10.00 0.00 43.16 2.43
518 524 4.474113 ACTCGCTTTTCGACTAGTTGTAG 58.526 43.478 10.00 7.45 43.16 2.74
605 611 7.172342 TGGCAACTTTATACCTTACTCACATT 58.828 34.615 0.00 0.00 37.61 2.71
608 614 7.443259 TTTGGCAACTTTATACCTTACTCAC 57.557 36.000 0.00 0.00 37.61 3.51
1094 1157 0.325296 TCGCCCACACCTAGGATTCT 60.325 55.000 17.98 0.00 0.00 2.40
1521 1677 3.949754 GCATGAATTCCAATCTCCACAGA 59.050 43.478 2.27 0.00 0.00 3.41
1660 1816 3.418684 TTTGGAGAGCTAAGGTTCCAC 57.581 47.619 0.00 0.00 39.32 4.02
1763 1922 7.412853 GTGATGGATGACTTGCTTATAAACTG 58.587 38.462 0.00 0.00 0.00 3.16
1977 2144 6.577427 GGCGTATATTGAATGGACGAAAAATC 59.423 38.462 15.02 0.29 35.59 2.17
2034 2201 0.999228 CTCGTATGCATCGTCGGCTC 60.999 60.000 0.19 0.00 0.00 4.70
2197 2364 4.078639 ACAAAAGAGAGGAGGTGTTCTG 57.921 45.455 0.00 0.00 0.00 3.02
2260 2428 0.325296 AGGTGGGGCGATGAGTAAGA 60.325 55.000 0.00 0.00 0.00 2.10
2399 2588 7.068702 AGGATTGGATTGAAAAGTATATGGCA 58.931 34.615 0.00 0.00 0.00 4.92
2431 2620 5.048782 TCGATCATGGAAAGGTTCACAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
2465 2654 3.199946 CCAGAAGGTAGGATGTTTGCCTA 59.800 47.826 0.00 0.00 36.96 3.93
2701 2891 8.708742 TCTCTAAACTAATGTTTGTTGATGACG 58.291 33.333 4.64 0.00 45.01 4.35
2770 2960 4.899502 TCTTAAGAAAGCAGGTCTTGGAG 58.100 43.478 1.68 5.41 36.06 3.86
2814 3279 3.956199 ACTGAATGCACCATCTTATTGGG 59.044 43.478 0.00 0.00 41.35 4.12
2983 3448 9.523168 GTATGAGTAGATATGGGAAAGAGTACT 57.477 37.037 0.00 0.00 0.00 2.73
3095 3564 6.310197 GTGTGATTTATTCAGAGTGAACAGC 58.690 40.000 0.00 0.00 39.45 4.40
3176 3645 6.594159 CCATCCTGGACATACGATAATAAACC 59.406 42.308 0.00 0.00 40.96 3.27
3219 3688 5.293079 GCCTTGTTCTAGTGTGATCTTCATC 59.707 44.000 0.00 0.00 0.00 2.92
3298 3768 0.392706 TTGTGAGACGATGTGGCAGT 59.607 50.000 0.00 0.00 0.00 4.40
3315 3787 8.084073 ACACTTGTTGATGATAGGTGATTTTTG 58.916 33.333 0.00 0.00 0.00 2.44
3549 4131 3.434309 AGGCTGCCAGAATTGTATTGTT 58.566 40.909 22.65 0.00 0.00 2.83
3662 4244 4.817464 TCTCGGATAGTTGAAGAGCTAGTC 59.183 45.833 0.00 0.00 0.00 2.59
3732 4322 2.167693 TGTGATAAGGAAGGCACCTACG 59.832 50.000 3.82 0.00 39.62 3.51
3956 4558 4.762251 AGCCAAGGAAGTAAGTTGATCAAC 59.238 41.667 27.69 27.69 41.45 3.18
4143 4745 2.429930 CCTTGTCGGGGCTGAACA 59.570 61.111 0.00 0.00 0.00 3.18
4155 4758 2.243736 TCAACTTGGTTCCTTCCCTTGT 59.756 45.455 0.00 0.00 0.00 3.16
4234 4843 1.133884 AGGTCTCGTCCATGATACCGA 60.134 52.381 0.00 0.00 39.43 4.69
4574 5185 1.529152 TTGCGCGGTGGAGAACTCTA 61.529 55.000 8.83 0.00 0.00 2.43
4603 5214 0.471617 CGGGCCAAGGAAGATGATCT 59.528 55.000 4.39 0.00 0.00 2.75
4891 7886 1.216710 GCTCTTGTCTCCACCTCGG 59.783 63.158 0.00 0.00 0.00 4.63
5022 8017 2.281140 TGCCATCGAAATGTGCATTG 57.719 45.000 0.00 0.00 35.50 2.82
5023 8018 3.530265 ATTGCCATCGAAATGTGCATT 57.470 38.095 0.00 0.00 38.23 3.56
5216 8220 9.909644 GATATCAGCTTCAAATTCTGCATTAAT 57.090 29.630 0.00 0.00 0.00 1.40
5359 8363 1.760613 AGAAGGTCACGAGTTGAACCA 59.239 47.619 8.72 0.00 43.93 3.67
5398 8402 1.121407 ATGCGGCATACCAGCTAGGA 61.121 55.000 14.96 0.00 41.22 2.94
5667 8671 2.258013 GCTGCAACCGTAGTGCCAA 61.258 57.895 0.00 0.00 0.00 4.52
5699 8703 4.572389 GGTTATGTGGCATAGTTGACTCAG 59.428 45.833 0.00 0.00 37.76 3.35
5714 8718 6.462500 CCTCTGGAGATATGAAGGTTATGTG 58.538 44.000 0.00 0.00 0.00 3.21
5821 8825 9.708092 TTGATCAAATGTGCATTTAGAAAATCA 57.292 25.926 5.45 10.36 38.84 2.57
5970 8974 6.017770 CACTAAATTTCCAGAAACCACGTACA 60.018 38.462 0.00 0.00 32.51 2.90
5978 8982 5.691754 CACAAGCCACTAAATTTCCAGAAAC 59.308 40.000 0.00 0.00 32.51 2.78
6200 9204 1.714794 ACTCGAGCGTTTTCATCCAG 58.285 50.000 13.61 0.00 0.00 3.86
6306 9310 3.383761 CAAGTTGCAAAGGATGTTGGAC 58.616 45.455 0.00 0.00 0.00 4.02
6310 9314 2.397597 ACCCAAGTTGCAAAGGATGTT 58.602 42.857 13.72 0.00 0.00 2.71
6323 9327 4.908601 TGACACAATCTCATACCCAAGT 57.091 40.909 0.00 0.00 0.00 3.16
6338 9342 2.638719 GCGCACTGCAATGACACA 59.361 55.556 0.30 0.00 45.45 3.72
6351 9356 0.236187 GACAACAATACAACCGCGCA 59.764 50.000 8.75 0.00 0.00 6.09
6356 9361 2.292292 AGCCAACGACAACAATACAACC 59.708 45.455 0.00 0.00 0.00 3.77
6362 9367 0.030638 GTGCAGCCAACGACAACAAT 59.969 50.000 0.00 0.00 0.00 2.71
6392 9397 5.000012 ACTAGAAGGAACATAGCGACAAG 58.000 43.478 0.00 0.00 0.00 3.16
6442 9512 8.034804 GGTGGCAAACAGAGATTATTACAAATT 58.965 33.333 0.00 0.00 0.00 1.82
6746 9830 7.714377 AGATCTACATTTGAACATAGCTTCAGG 59.286 37.037 0.00 0.00 31.76 3.86
6765 9849 4.748102 TGTTCGACAACCAAACAGATCTAC 59.252 41.667 0.00 0.00 0.00 2.59
6766 9850 4.748102 GTGTTCGACAACCAAACAGATCTA 59.252 41.667 0.00 0.00 33.84 1.98
6767 9851 3.560068 GTGTTCGACAACCAAACAGATCT 59.440 43.478 0.00 0.00 33.84 2.75
6768 9852 3.560068 AGTGTTCGACAACCAAACAGATC 59.440 43.478 0.00 0.00 33.84 2.75
6769 9853 3.541632 AGTGTTCGACAACCAAACAGAT 58.458 40.909 0.00 0.00 33.84 2.90
6770 9854 2.933906 GAGTGTTCGACAACCAAACAGA 59.066 45.455 0.00 0.00 33.84 3.41
6771 9855 2.936498 AGAGTGTTCGACAACCAAACAG 59.064 45.455 0.00 0.00 33.84 3.16
6772 9856 2.675844 CAGAGTGTTCGACAACCAAACA 59.324 45.455 0.00 0.00 0.00 2.83
6773 9857 2.676342 ACAGAGTGTTCGACAACCAAAC 59.324 45.455 0.00 0.00 0.00 2.93
6774 9858 2.933906 GACAGAGTGTTCGACAACCAAA 59.066 45.455 0.00 0.00 0.00 3.28
6775 9859 2.167693 AGACAGAGTGTTCGACAACCAA 59.832 45.455 0.00 0.00 0.00 3.67
6776 9860 1.754803 AGACAGAGTGTTCGACAACCA 59.245 47.619 0.00 0.00 0.00 3.67
6777 9861 2.128035 CAGACAGAGTGTTCGACAACC 58.872 52.381 0.00 0.00 0.00 3.77
6778 9862 1.523095 GCAGACAGAGTGTTCGACAAC 59.477 52.381 0.00 0.00 0.00 3.32
6779 9863 1.538204 GGCAGACAGAGTGTTCGACAA 60.538 52.381 0.00 0.00 0.00 3.18
6780 9864 0.032130 GGCAGACAGAGTGTTCGACA 59.968 55.000 0.00 0.00 0.00 4.35
6781 9865 0.315568 AGGCAGACAGAGTGTTCGAC 59.684 55.000 0.00 0.00 0.00 4.20
6782 9866 1.813178 CTAGGCAGACAGAGTGTTCGA 59.187 52.381 0.00 0.00 0.00 3.71
6783 9867 1.542030 ACTAGGCAGACAGAGTGTTCG 59.458 52.381 0.00 0.00 0.00 3.95
6784 9868 3.669251 AACTAGGCAGACAGAGTGTTC 57.331 47.619 0.00 0.00 0.00 3.18
6785 9869 4.423625 AAAACTAGGCAGACAGAGTGTT 57.576 40.909 0.00 0.00 0.00 3.32
6786 9870 4.130118 CAAAAACTAGGCAGACAGAGTGT 58.870 43.478 0.00 0.00 0.00 3.55
6787 9871 4.130118 ACAAAAACTAGGCAGACAGAGTG 58.870 43.478 0.00 0.00 0.00 3.51
6788 9872 4.423625 ACAAAAACTAGGCAGACAGAGT 57.576 40.909 0.00 0.00 0.00 3.24
6789 9873 5.066505 ACAAACAAAAACTAGGCAGACAGAG 59.933 40.000 0.00 0.00 0.00 3.35
6790 9874 4.947388 ACAAACAAAAACTAGGCAGACAGA 59.053 37.500 0.00 0.00 0.00 3.41
6791 9875 5.036737 CACAAACAAAAACTAGGCAGACAG 58.963 41.667 0.00 0.00 0.00 3.51
6792 9876 4.676723 GCACAAACAAAAACTAGGCAGACA 60.677 41.667 0.00 0.00 0.00 3.41
6793 9877 3.796717 GCACAAACAAAAACTAGGCAGAC 59.203 43.478 0.00 0.00 0.00 3.51
6794 9878 3.488384 CGCACAAACAAAAACTAGGCAGA 60.488 43.478 0.00 0.00 0.00 4.26
6795 9879 2.788786 CGCACAAACAAAAACTAGGCAG 59.211 45.455 0.00 0.00 0.00 4.85
6796 9880 2.423892 TCGCACAAACAAAAACTAGGCA 59.576 40.909 0.00 0.00 0.00 4.75
6797 9881 3.073144 TCGCACAAACAAAAACTAGGC 57.927 42.857 0.00 0.00 0.00 3.93
6798 9882 7.867445 ATATTTCGCACAAACAAAAACTAGG 57.133 32.000 0.00 0.00 0.00 3.02
6806 9890 9.855361 CACAAATTTTATATTTCGCACAAACAA 57.145 25.926 0.00 0.00 0.00 2.83
6807 9891 8.006590 GCACAAATTTTATATTTCGCACAAACA 58.993 29.630 0.00 0.00 0.00 2.83
6808 9892 8.220434 AGCACAAATTTTATATTTCGCACAAAC 58.780 29.630 0.00 0.00 0.00 2.93
6809 9893 8.219769 CAGCACAAATTTTATATTTCGCACAAA 58.780 29.630 0.00 0.00 0.00 2.83
6810 9894 7.596621 TCAGCACAAATTTTATATTTCGCACAA 59.403 29.630 0.00 0.00 0.00 3.33
6811 9895 7.087007 TCAGCACAAATTTTATATTTCGCACA 58.913 30.769 0.00 0.00 0.00 4.57
6812 9896 7.504922 TCAGCACAAATTTTATATTTCGCAC 57.495 32.000 0.00 0.00 0.00 5.34
6813 9897 8.593842 CATTCAGCACAAATTTTATATTTCGCA 58.406 29.630 0.00 0.00 0.00 5.10
6814 9898 7.580165 GCATTCAGCACAAATTTTATATTTCGC 59.420 33.333 0.00 0.00 44.79 4.70
6815 9899 8.961295 GCATTCAGCACAAATTTTATATTTCG 57.039 30.769 0.00 0.00 44.79 3.46
6840 9924 8.130469 TCAACAAACATATAAGCAGCATATGTG 58.870 33.333 15.68 13.73 44.81 3.21
6841 9925 8.131100 GTCAACAAACATATAAGCAGCATATGT 58.869 33.333 11.07 11.07 46.58 2.29
6842 9926 8.347771 AGTCAACAAACATATAAGCAGCATATG 58.652 33.333 10.02 10.02 40.62 1.78
6843 9927 8.347771 CAGTCAACAAACATATAAGCAGCATAT 58.652 33.333 0.00 0.00 0.00 1.78
6844 9928 7.552330 TCAGTCAACAAACATATAAGCAGCATA 59.448 33.333 0.00 0.00 0.00 3.14
6845 9929 6.375174 TCAGTCAACAAACATATAAGCAGCAT 59.625 34.615 0.00 0.00 0.00 3.79
6846 9930 5.704978 TCAGTCAACAAACATATAAGCAGCA 59.295 36.000 0.00 0.00 0.00 4.41
6847 9931 6.182039 TCAGTCAACAAACATATAAGCAGC 57.818 37.500 0.00 0.00 0.00 5.25
6848 9932 7.810658 AGTTCAGTCAACAAACATATAAGCAG 58.189 34.615 0.00 0.00 37.48 4.24
6849 9933 7.744087 AGTTCAGTCAACAAACATATAAGCA 57.256 32.000 0.00 0.00 37.48 3.91
6850 9934 7.061094 GCAAGTTCAGTCAACAAACATATAAGC 59.939 37.037 0.00 0.00 37.48 3.09
6851 9935 8.075574 TGCAAGTTCAGTCAACAAACATATAAG 58.924 33.333 0.00 0.00 37.48 1.73
6852 9936 7.935520 TGCAAGTTCAGTCAACAAACATATAA 58.064 30.769 0.00 0.00 37.48 0.98
6853 9937 7.503521 TGCAAGTTCAGTCAACAAACATATA 57.496 32.000 0.00 0.00 37.48 0.86
6854 9938 6.389830 TGCAAGTTCAGTCAACAAACATAT 57.610 33.333 0.00 0.00 37.48 1.78
6855 9939 5.820131 CTGCAAGTTCAGTCAACAAACATA 58.180 37.500 0.00 0.00 37.48 2.29
6856 9940 4.675510 CTGCAAGTTCAGTCAACAAACAT 58.324 39.130 0.00 0.00 37.48 2.71
6857 9941 4.095410 CTGCAAGTTCAGTCAACAAACA 57.905 40.909 0.00 0.00 37.48 2.83
6872 9956 7.934457 AGCATCAGGTTAATATAAACTGCAAG 58.066 34.615 9.73 4.39 42.29 4.01
6873 9957 7.880160 AGCATCAGGTTAATATAAACTGCAA 57.120 32.000 9.73 0.00 32.32 4.08
6874 9958 9.002600 CATAGCATCAGGTTAATATAAACTGCA 57.997 33.333 9.73 0.00 32.32 4.41
6989 10190 7.888021 TGTGAATATTGAGAACATAACTTGGGT 59.112 33.333 0.00 0.00 0.00 4.51
7355 10689 2.745100 GTTTCCTCGTTCCGGCCC 60.745 66.667 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.