Multiple sequence alignment - TraesCS7D01G032900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G032900 chr7D 100.000 3273 0 0 1 3273 16998724 16995452 0.000000e+00 6045.0
1 TraesCS7D01G032900 chr7D 92.242 1650 80 12 942 2574 16756340 16757958 0.000000e+00 2294.0
2 TraesCS7D01G032900 chr7D 86.136 880 103 14 10 885 17129604 17128740 0.000000e+00 931.0
3 TraesCS7D01G032900 chr7D 96.512 430 14 1 2041 2470 17125158 17124730 0.000000e+00 710.0
4 TraesCS7D01G032900 chr7D 99.733 375 0 1 2900 3273 16760229 16760603 0.000000e+00 686.0
5 TraesCS7D01G032900 chr7D 97.340 376 8 2 2900 3273 17122391 17122016 3.560000e-179 638.0
6 TraesCS7D01G032900 chr7D 100.000 335 0 0 2569 2903 16757988 16758322 1.290000e-173 619.0
7 TraesCS7D01G032900 chr7D 97.329 337 7 2 2569 2903 17124635 17124299 3.660000e-159 571.0
8 TraesCS7D01G032900 chr4A 93.140 1968 112 8 942 2903 717808158 717806208 0.000000e+00 2865.0
9 TraesCS7D01G032900 chr4A 93.614 1566 80 8 942 2494 717220961 717222519 0.000000e+00 2320.0
10 TraesCS7D01G032900 chr4A 93.859 1547 76 6 942 2479 717282650 717284186 0.000000e+00 2313.0
11 TraesCS7D01G032900 chr4A 92.144 1642 94 8 942 2574 717256141 717257756 0.000000e+00 2285.0
12 TraesCS7D01G032900 chr4A 92.543 1274 80 8 942 2211 717757357 717756095 0.000000e+00 1812.0
13 TraesCS7D01G032900 chr4A 86.737 852 100 7 1 846 717810007 717809163 0.000000e+00 935.0
14 TraesCS7D01G032900 chr4A 97.613 377 6 3 2900 3273 717260016 717260392 0.000000e+00 643.0
15 TraesCS7D01G032900 chr4A 96.543 376 11 2 2900 3273 717753490 717753115 3.590000e-174 621.0
16 TraesCS7D01G032900 chr4A 95.479 376 9 3 2900 3273 717804302 717803933 7.820000e-166 593.0
17 TraesCS7D01G032900 chr4A 94.933 375 18 1 2900 3273 717224918 717225292 1.310000e-163 586.0
18 TraesCS7D01G032900 chr4A 89.845 453 18 6 2479 2903 717222533 717222985 1.030000e-154 556.0
19 TraesCS7D01G032900 chr4A 87.872 470 44 9 418 885 717252943 717253401 1.030000e-149 540.0
20 TraesCS7D01G032900 chr4A 94.985 339 11 4 2569 2903 717257786 717258122 8.040000e-146 527.0
21 TraesCS7D01G032900 chr4A 84.529 446 55 10 442 885 717280203 717280636 2.330000e-116 429.0
22 TraesCS7D01G032900 chr4A 95.076 264 11 2 2642 2903 717284190 717284453 6.530000e-112 414.0
23 TraesCS7D01G032900 chr4A 92.177 294 15 3 2209 2494 717756046 717755753 3.040000e-110 409.0
24 TraesCS7D01G032900 chr4A 86.087 345 38 5 541 885 717218492 717218826 2.400000e-96 363.0
25 TraesCS7D01G032900 chr4A 93.865 163 7 2 2569 2728 717755616 717755454 3.260000e-60 243.0
26 TraesCS7D01G032900 chr4A 92.708 96 7 0 2479 2574 717755740 717755645 4.400000e-29 139.0
27 TraesCS7D01G032900 chr4A 88.889 72 6 2 873 943 440938461 440938531 1.620000e-13 87.9
28 TraesCS7D01G032900 chr7B 91.373 1646 120 13 942 2574 655815339 655813703 0.000000e+00 2233.0
29 TraesCS7D01G032900 chr7B 94.933 375 16 3 2900 3273 655809049 655808677 4.710000e-163 584.0
30 TraesCS7D01G032900 chr7B 93.805 339 18 2 2568 2903 655813674 655813336 1.050000e-139 507.0
31 TraesCS7D01G032900 chr7A 94.774 1263 59 2 942 2204 16436307 16435052 0.000000e+00 1960.0
32 TraesCS7D01G032900 chr7A 94.691 1262 60 2 942 2203 16324171 16322917 0.000000e+00 1953.0
33 TraesCS7D01G032900 chr7A 90.179 1232 83 12 1373 2571 15818720 15819946 0.000000e+00 1570.0
34 TraesCS7D01G032900 chr7A 93.800 871 52 1 945 1813 16432624 16431754 0.000000e+00 1308.0
35 TraesCS7D01G032900 chr7A 92.147 815 56 3 1760 2574 16394809 16394003 0.000000e+00 1144.0
36 TraesCS7D01G032900 chr7A 92.602 784 43 5 1798 2574 16430456 16429681 0.000000e+00 1112.0
37 TraesCS7D01G032900 chr7A 88.036 886 87 9 1 883 16326441 16325572 0.000000e+00 1031.0
38 TraesCS7D01G032900 chr7A 97.333 375 9 1 2900 3273 16315345 16314971 1.280000e-178 636.0
39 TraesCS7D01G032900 chr7A 97.297 370 10 0 2205 2574 16317900 16317531 2.140000e-176 628.0
40 TraesCS7D01G032900 chr7A 96.286 377 11 3 2900 3273 16382270 16381894 1.670000e-172 616.0
41 TraesCS7D01G032900 chr7A 97.865 281 3 2 2569 2846 16393977 16393697 1.770000e-132 483.0
42 TraesCS7D01G032900 chr7A 98.374 246 2 1 2660 2903 16429591 16429346 6.490000e-117 431.0
43 TraesCS7D01G032900 chr7A 84.017 463 44 8 389 846 16437769 16437332 5.050000e-113 418.0
44 TraesCS7D01G032900 chr7A 94.304 158 9 0 2746 2903 15820126 15820283 3.260000e-60 243.0
45 TraesCS7D01G032900 chr7A 91.716 169 12 2 2568 2734 15819978 15820146 1.960000e-57 233.0
46 TraesCS7D01G032900 chr7A 91.429 70 6 0 876 945 116776924 116776855 2.690000e-16 97.1
47 TraesCS7D01G032900 chr3A 75.179 560 90 34 340 882 423690973 423690446 5.500000e-53 219.0
48 TraesCS7D01G032900 chr4D 91.176 68 6 0 878 945 427981292 427981359 3.480000e-15 93.5
49 TraesCS7D01G032900 chr3B 91.304 69 5 1 876 943 655858576 655858644 3.480000e-15 93.5
50 TraesCS7D01G032900 chr3B 90.000 70 7 0 874 943 22647327 22647396 1.250000e-14 91.6
51 TraesCS7D01G032900 chr3D 91.045 67 6 0 877 943 50247945 50248011 1.250000e-14 91.6
52 TraesCS7D01G032900 chr2D 91.045 67 6 0 877 943 199313615 199313549 1.250000e-14 91.6
53 TraesCS7D01G032900 chr5B 90.000 70 6 1 875 943 482995333 482995402 4.500000e-14 89.8
54 TraesCS7D01G032900 chr2B 88.732 71 8 0 873 943 139915268 139915338 1.620000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G032900 chr7D 16995452 16998724 3272 True 6045.000000 6045 100.000000 1 3273 1 chr7D.!!$R1 3272
1 TraesCS7D01G032900 chr7D 16756340 16760603 4263 False 1199.666667 2294 97.325000 942 3273 3 chr7D.!!$F1 2331
2 TraesCS7D01G032900 chr7D 17122016 17129604 7588 True 712.500000 931 94.329250 10 3273 4 chr7D.!!$R2 3263
3 TraesCS7D01G032900 chr4A 717803933 717810007 6074 True 1464.333333 2865 91.785333 1 3273 3 chr4A.!!$R2 3272
4 TraesCS7D01G032900 chr4A 717280203 717284453 4250 False 1052.000000 2313 91.154667 442 2903 3 chr4A.!!$F4 2461
5 TraesCS7D01G032900 chr4A 717252943 717260392 7449 False 998.750000 2285 93.153500 418 3273 4 chr4A.!!$F3 2855
6 TraesCS7D01G032900 chr4A 717218492 717225292 6800 False 956.250000 2320 91.119750 541 3273 4 chr4A.!!$F2 2732
7 TraesCS7D01G032900 chr4A 717753115 717757357 4242 True 644.800000 1812 93.567200 942 3273 5 chr4A.!!$R1 2331
8 TraesCS7D01G032900 chr7B 655813336 655815339 2003 True 1370.000000 2233 92.589000 942 2903 2 chr7B.!!$R2 1961
9 TraesCS7D01G032900 chr7A 16322917 16326441 3524 True 1492.000000 1953 91.363500 1 2203 2 chr7A.!!$R4 2202
10 TraesCS7D01G032900 chr7A 16429346 16437769 8423 True 1045.800000 1960 92.713400 389 2903 5 chr7A.!!$R6 2514
11 TraesCS7D01G032900 chr7A 16393697 16394809 1112 True 813.500000 1144 95.006000 1760 2846 2 chr7A.!!$R5 1086
12 TraesCS7D01G032900 chr7A 15818720 15820283 1563 False 682.000000 1570 92.066333 1373 2903 3 chr7A.!!$F1 1530
13 TraesCS7D01G032900 chr7A 16314971 16317900 2929 True 632.000000 636 97.315000 2205 3273 2 chr7A.!!$R3 1068
14 TraesCS7D01G032900 chr3A 423690446 423690973 527 True 219.000000 219 75.179000 340 882 1 chr3A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 620 0.032678 AGAGTTGGTGTCTGCGTCAG 59.967 55.0 1.02 1.02 0.00 3.51 F
765 781 0.250467 GGAAGACTGCAGCCAAGACA 60.250 55.0 15.27 0.00 0.00 3.41 F
1113 10156 0.445436 CCGTTGTCGCTCTACTACGT 59.555 55.0 13.31 0.00 43.78 3.57 F
1774 10833 0.609662 GGCAAATGACAAGGCATGGT 59.390 50.0 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 10810 0.313672 TGCCTTGTCATTTGCCGAAC 59.686 50.000 0.00 0.0 0.0 3.95 R
1878 12265 1.442769 CCTTCTTGGTCATGGTGTCG 58.557 55.000 0.00 0.0 0.0 4.35 R
2091 12478 2.090760 TGTTGAAGAGCTGCAAACACA 58.909 42.857 1.02 0.0 0.0 3.72 R
2986 15513 4.839706 GCCCGCCATCACCCCATT 62.840 66.667 0.00 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.682334 TGGTCGGACGCCCACCTA 62.682 66.667 12.32 0.00 35.77 3.08
88 89 1.676968 CCATTCTGGTGACCGGTCA 59.323 57.895 33.23 33.23 37.24 4.02
160 161 1.613925 CGTCGATGATCCCAGGTACAT 59.386 52.381 0.00 0.00 0.00 2.29
184 185 2.562298 GCACATCCTCAATTTGGGTCAA 59.438 45.455 0.00 0.00 0.00 3.18
187 188 5.797051 CACATCCTCAATTTGGGTCAATTT 58.203 37.500 0.00 0.00 0.00 1.82
201 202 4.082125 GGTCAATTTGTTCTGGGATGAGT 58.918 43.478 0.00 0.00 0.00 3.41
206 207 4.610605 TTTGTTCTGGGATGAGTACGAA 57.389 40.909 0.00 0.00 0.00 3.85
267 268 1.165270 GCAGTCACGTTTTAGGGCAT 58.835 50.000 0.00 0.00 0.00 4.40
268 269 1.539827 GCAGTCACGTTTTAGGGCATT 59.460 47.619 0.00 0.00 0.00 3.56
280 281 3.288099 GGGCATTGTGTCCTCCAAT 57.712 52.632 0.00 0.00 39.55 3.16
291 292 2.001269 CCTCCAATCCCTCCCCGTT 61.001 63.158 0.00 0.00 0.00 4.44
292 293 1.571773 CCTCCAATCCCTCCCCGTTT 61.572 60.000 0.00 0.00 0.00 3.60
381 385 0.748367 CATGACGGTCGAGGAGGAGA 60.748 60.000 3.34 0.00 0.00 3.71
446 451 0.617820 AGAACGCCTAGTGGGATGGT 60.618 55.000 0.00 0.00 37.23 3.55
458 463 1.685224 GGATGGTCTGGAGGTGCAA 59.315 57.895 0.00 0.00 0.00 4.08
484 490 3.242897 TTTCGGCCGTCGGGATGTT 62.243 57.895 27.15 0.00 39.77 2.71
600 615 3.660621 GCCAGAGTTGGTGTCTGC 58.339 61.111 0.00 0.00 46.80 4.26
601 616 2.320587 GCCAGAGTTGGTGTCTGCG 61.321 63.158 0.00 0.00 46.80 5.18
602 617 1.069765 CCAGAGTTGGTGTCTGCGT 59.930 57.895 0.00 0.00 40.22 5.24
603 618 0.946221 CCAGAGTTGGTGTCTGCGTC 60.946 60.000 0.00 0.00 40.22 5.19
604 619 0.249447 CAGAGTTGGTGTCTGCGTCA 60.249 55.000 0.00 0.00 35.33 4.35
605 620 0.032678 AGAGTTGGTGTCTGCGTCAG 59.967 55.000 1.02 1.02 0.00 3.51
689 705 1.074599 TGCAGTGCAGCCACCATAA 59.925 52.632 15.37 0.00 43.09 1.90
753 769 0.322277 TAGCACGGACGAGGAAGACT 60.322 55.000 0.00 0.00 0.00 3.24
765 781 0.250467 GGAAGACTGCAGCCAAGACA 60.250 55.000 15.27 0.00 0.00 3.41
855 890 6.932356 AGTTCGATGCATGATGAATAGTTT 57.068 33.333 2.46 0.00 0.00 2.66
857 892 6.539826 AGTTCGATGCATGATGAATAGTTTGA 59.460 34.615 2.46 0.00 0.00 2.69
871 906 7.874940 TGAATAGTTTGACCATGACTTTTGAG 58.125 34.615 0.00 0.00 0.00 3.02
885 1344 9.210426 CATGACTTTTGAGCGTTAATGTAATAC 57.790 33.333 0.00 0.00 0.00 1.89
886 1345 8.542497 TGACTTTTGAGCGTTAATGTAATACT 57.458 30.769 0.00 0.00 0.00 2.12
887 1346 8.653338 TGACTTTTGAGCGTTAATGTAATACTC 58.347 33.333 0.00 0.00 0.00 2.59
888 1347 8.773404 ACTTTTGAGCGTTAATGTAATACTCT 57.227 30.769 0.00 0.00 0.00 3.24
889 1348 9.216117 ACTTTTGAGCGTTAATGTAATACTCTT 57.784 29.630 0.00 0.00 0.00 2.85
892 1351 7.766219 TGAGCGTTAATGTAATACTCTTTCC 57.234 36.000 0.00 0.00 0.00 3.13
893 1352 6.474427 TGAGCGTTAATGTAATACTCTTTCCG 59.526 38.462 0.00 0.00 0.00 4.30
894 1353 6.335777 AGCGTTAATGTAATACTCTTTCCGT 58.664 36.000 0.00 0.00 0.00 4.69
896 1355 6.292008 GCGTTAATGTAATACTCTTTCCGTCC 60.292 42.308 0.00 0.00 0.00 4.79
897 1356 6.199719 CGTTAATGTAATACTCTTTCCGTCCC 59.800 42.308 0.00 0.00 0.00 4.46
898 1357 5.687166 AATGTAATACTCTTTCCGTCCCA 57.313 39.130 0.00 0.00 0.00 4.37
906 5966 4.470602 ACTCTTTCCGTCCCAAAATTCTT 58.529 39.130 0.00 0.00 0.00 2.52
909 5969 4.277423 TCTTTCCGTCCCAAAATTCTTGTC 59.723 41.667 0.00 0.00 0.00 3.18
912 5972 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
920 5980 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
921 5981 8.773645 CCCAAAATTCTTGTCTTAAATTTGTCC 58.226 33.333 0.00 0.00 33.95 4.02
922 5982 9.323985 CCAAAATTCTTGTCTTAAATTTGTCCA 57.676 29.630 0.00 0.00 33.95 4.02
927 5987 8.696410 TTCTTGTCTTAAATTTGTCCAAACAC 57.304 30.769 0.00 0.00 34.35 3.32
928 5988 6.970043 TCTTGTCTTAAATTTGTCCAAACACG 59.030 34.615 0.00 0.00 34.35 4.49
932 5992 6.362283 GTCTTAAATTTGTCCAAACACGGATG 59.638 38.462 0.00 0.00 37.41 3.51
936 5996 5.560966 ATTTGTCCAAACACGGATGTATC 57.439 39.130 0.00 0.00 38.45 2.24
939 5999 2.936498 GTCCAAACACGGATGTATCAGG 59.064 50.000 0.00 0.00 38.45 3.86
940 6000 2.569853 TCCAAACACGGATGTATCAGGT 59.430 45.455 0.00 0.00 38.45 4.00
1113 10156 0.445436 CCGTTGTCGCTCTACTACGT 59.555 55.000 13.31 0.00 43.78 3.57
1167 10216 3.401033 TGTCGTCATTGGTGTGATCTT 57.599 42.857 0.00 0.00 0.00 2.40
1185 10234 1.617850 CTTCTCTCAGCACACAGGTCT 59.382 52.381 0.00 0.00 0.00 3.85
1202 10251 1.078567 CTTCTGTCCAGCCTCTGCC 60.079 63.158 0.00 0.00 38.69 4.85
1751 10810 9.076781 TGAGGAAGATATAACTGAAGATCTCTG 57.923 37.037 0.00 0.00 0.00 3.35
1774 10833 0.609662 GGCAAATGACAAGGCATGGT 59.390 50.000 0.00 0.00 0.00 3.55
1780 10839 3.719268 ATGACAAGGCATGGTTAGTGA 57.281 42.857 0.00 0.00 0.00 3.41
1782 10841 4.032960 TGACAAGGCATGGTTAGTGATT 57.967 40.909 0.00 0.00 0.00 2.57
1878 12265 2.163211 GGCCTTCAAGCTTGAGTCATTC 59.837 50.000 27.02 14.55 38.61 2.67
2214 12654 2.291465 CTGTGAGTGTGGTTGGTGATTG 59.709 50.000 0.00 0.00 0.00 2.67
2287 12734 6.166279 GGATGAGTAGTTCACTGAATGTTCA 58.834 40.000 0.00 0.00 38.99 3.18
2516 13021 9.508642 TTGTACTATGGTTGTTGATTATTCACA 57.491 29.630 0.00 0.00 0.00 3.58
2562 13067 4.081406 TCTCATTGGGTGGAAATGTGAAG 58.919 43.478 0.00 0.00 35.64 3.02
2986 15513 3.992641 TCAGAGGAGGTCGCCCCA 61.993 66.667 0.00 0.00 34.66 4.96
2988 15515 2.041265 AGAGGAGGTCGCCCCAAT 59.959 61.111 0.00 0.00 34.66 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.640407 ATGTGCCAGCTGGTCGGT 61.640 61.111 32.81 14.97 37.57 4.69
50 51 2.125106 GACACTGGCACCCGATCC 60.125 66.667 0.00 0.00 0.00 3.36
88 89 0.665835 GATCTCGAGGAGTCGCATGT 59.334 55.000 13.56 0.00 46.39 3.21
95 96 1.187087 GGTGGTTGATCTCGAGGAGT 58.813 55.000 13.56 0.00 0.00 3.85
160 161 1.462616 CCAAATTGAGGATGTGCCGA 58.537 50.000 0.00 0.00 43.43 5.54
184 185 4.819105 TCGTACTCATCCCAGAACAAAT 57.181 40.909 0.00 0.00 0.00 2.32
187 188 3.056821 CACTTCGTACTCATCCCAGAACA 60.057 47.826 0.00 0.00 0.00 3.18
201 202 2.432456 CTGCTGGCGCACTTCGTA 60.432 61.111 10.83 0.00 42.25 3.43
259 260 1.367346 TGGAGGACACAATGCCCTAA 58.633 50.000 0.00 0.00 0.00 2.69
267 268 0.991920 GGAGGGATTGGAGGACACAA 59.008 55.000 0.00 0.00 0.00 3.33
268 269 0.914417 GGGAGGGATTGGAGGACACA 60.914 60.000 0.00 0.00 0.00 3.72
291 292 2.031314 TCGTGCCCTAAAGCGCAA 59.969 55.556 11.47 0.00 43.54 4.85
292 293 2.740826 GTCGTGCCCTAAAGCGCA 60.741 61.111 11.47 0.00 43.54 6.09
337 338 0.620556 ATGTGGATCTGGTGGTGGTC 59.379 55.000 0.00 0.00 0.00 4.02
381 385 1.614824 CCCTCCTCACCAGCTCCTT 60.615 63.158 0.00 0.00 0.00 3.36
402 407 1.153823 CCATCACCGAGTCCGTCAC 60.154 63.158 0.00 0.00 0.00 3.67
446 451 1.741401 CGCGATTTGCACCTCCAGA 60.741 57.895 0.00 0.00 46.97 3.86
484 490 2.038813 TCCAGCTCGGGGATGACA 59.961 61.111 0.00 0.00 32.28 3.58
558 573 3.980583 GACAAGGTCGAAGTCCACA 57.019 52.632 0.00 0.00 38.46 4.17
716 732 0.038744 TAAGGTCGACGAAGGGAGGT 59.961 55.000 9.92 0.00 0.00 3.85
836 871 5.007921 TGGTCAAACTATTCATCATGCATCG 59.992 40.000 0.00 0.00 0.00 3.84
855 890 2.254546 ACGCTCAAAAGTCATGGTCA 57.745 45.000 0.00 0.00 0.00 4.02
857 892 4.518970 ACATTAACGCTCAAAAGTCATGGT 59.481 37.500 0.00 0.00 0.00 3.55
871 906 6.292008 GGACGGAAAGAGTATTACATTAACGC 60.292 42.308 0.00 0.00 0.00 4.84
885 1344 4.278419 ACAAGAATTTTGGGACGGAAAGAG 59.722 41.667 0.00 0.00 0.00 2.85
886 1345 4.211920 ACAAGAATTTTGGGACGGAAAGA 58.788 39.130 0.00 0.00 0.00 2.52
887 1346 4.278419 AGACAAGAATTTTGGGACGGAAAG 59.722 41.667 0.00 0.00 0.00 2.62
888 1347 4.211920 AGACAAGAATTTTGGGACGGAAA 58.788 39.130 0.00 0.00 0.00 3.13
889 1348 3.827722 AGACAAGAATTTTGGGACGGAA 58.172 40.909 0.00 0.00 0.00 4.30
891 1350 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
892 1351 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
893 1352 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
894 1353 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
896 1355 9.323985 TGGACAAATTTAAGACAAGAATTTTGG 57.676 29.630 0.00 0.00 33.39 3.28
906 5966 5.357314 TCCGTGTTTGGACAAATTTAAGACA 59.643 36.000 0.34 0.00 37.57 3.41
909 5969 6.212955 ACATCCGTGTTTGGACAAATTTAAG 58.787 36.000 0.34 0.00 41.85 1.85
912 5972 4.664150 ACATCCGTGTTTGGACAAATTT 57.336 36.364 0.34 0.00 41.85 1.82
920 5980 2.936498 GACCTGATACATCCGTGTTTGG 59.064 50.000 0.00 0.00 39.77 3.28
921 5981 3.595173 TGACCTGATACATCCGTGTTTG 58.405 45.455 0.00 0.00 39.77 2.93
922 5982 3.973206 TGACCTGATACATCCGTGTTT 57.027 42.857 0.00 0.00 39.77 2.83
927 5987 1.800805 GGCATGACCTGATACATCCG 58.199 55.000 0.00 0.00 34.51 4.18
939 5999 5.705609 TCAAGAAAAAGGTTAGGCATGAC 57.294 39.130 0.00 0.00 0.00 3.06
940 6000 6.916360 ATTCAAGAAAAAGGTTAGGCATGA 57.084 33.333 0.00 0.00 0.00 3.07
1167 10216 1.615883 GAAGACCTGTGTGCTGAGAGA 59.384 52.381 0.00 0.00 0.00 3.10
1185 10234 2.596851 GGGCAGAGGCTGGACAGAA 61.597 63.158 3.00 0.00 40.87 3.02
1202 10251 2.746375 CGGAGATTGGGGTGGAGGG 61.746 68.421 0.00 0.00 0.00 4.30
1229 10278 1.774110 ATGCGAGAGAGACTGTCCAT 58.226 50.000 3.76 0.00 0.00 3.41
1717 10776 9.739276 TTCAGTTATATCTTCCTCAAACACAAT 57.261 29.630 0.00 0.00 0.00 2.71
1751 10810 0.313672 TGCCTTGTCATTTGCCGAAC 59.686 50.000 0.00 0.00 0.00 3.95
1774 10833 4.397420 AGTGCATCACCACAAATCACTAA 58.603 39.130 0.00 0.00 38.18 2.24
1780 10839 3.759581 AGAGAAGTGCATCACCACAAAT 58.240 40.909 0.00 0.00 38.18 2.32
1782 10841 2.880268 CAAGAGAAGTGCATCACCACAA 59.120 45.455 0.00 0.00 38.18 3.33
1878 12265 1.442769 CCTTCTTGGTCATGGTGTCG 58.557 55.000 0.00 0.00 0.00 4.35
1972 12359 2.264480 CTCCGGGTTCATGCACGA 59.736 61.111 0.00 0.00 37.48 4.35
2074 12461 6.539324 CAAACACATCGAACGGTAATAACAT 58.461 36.000 0.00 0.00 0.00 2.71
2091 12478 2.090760 TGTTGAAGAGCTGCAAACACA 58.909 42.857 1.02 0.00 0.00 3.72
2092 12479 2.098117 AGTGTTGAAGAGCTGCAAACAC 59.902 45.455 16.76 16.76 0.00 3.32
2214 12654 2.421424 CACCAAAGCTGTATCAGAAGCC 59.579 50.000 0.66 0.00 40.42 4.35
2562 13067 4.882671 ATGGCGTACAATGTTCTCAATC 57.117 40.909 0.00 0.00 0.00 2.67
2986 15513 4.839706 GCCCGCCATCACCCCATT 62.840 66.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.