Multiple sequence alignment - TraesCS7D01G032700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G032700 chr7D 100.000 2913 0 0 1 2913 16913604 16910692 0.000000e+00 5380.0
1 TraesCS7D01G032700 chr7D 81.607 473 54 17 2437 2889 104906019 104905560 7.670000e-96 361.0
2 TraesCS7D01G032700 chr7D 93.133 233 15 1 134 365 578394914 578394682 1.000000e-89 340.0
3 TraesCS7D01G032700 chr7D 92.704 233 16 1 134 365 578419764 578419532 4.650000e-88 335.0
4 TraesCS7D01G032700 chr7D 91.845 233 18 1 134 365 578386623 578386391 1.010000e-84 324.0
5 TraesCS7D01G032700 chr4A 93.018 1776 76 17 669 2413 717725161 717723403 0.000000e+00 2549.0
6 TraesCS7D01G032700 chr4A 81.609 87 6 5 507 587 717725505 717725423 2.420000e-06 63.9
7 TraesCS7D01G032700 chr7A 92.841 1746 70 27 692 2413 16165013 16163299 0.000000e+00 2481.0
8 TraesCS7D01G032700 chr7A 82.749 371 42 8 2429 2779 250693363 250692995 7.840000e-81 311.0
9 TraesCS7D01G032700 chr7A 93.798 129 8 0 364 492 201069520 201069392 8.240000e-46 195.0
10 TraesCS7D01G032700 chr7A 87.500 144 16 2 2599 2741 38118876 38118734 6.460000e-37 165.0
11 TraesCS7D01G032700 chr7A 84.768 151 21 2 2746 2894 217551401 217551251 1.810000e-32 150.0
12 TraesCS7D01G032700 chr1B 82.325 1058 81 62 1347 2385 665294307 665295277 0.000000e+00 821.0
13 TraesCS7D01G032700 chr1B 84.865 185 26 2 1494 1677 499896494 499896677 4.960000e-43 185.0
14 TraesCS7D01G032700 chr1B 85.806 155 18 1 2681 2835 374867157 374867307 8.350000e-36 161.0
15 TraesCS7D01G032700 chr1B 95.455 66 3 0 75 140 453879232 453879297 3.970000e-19 106.0
16 TraesCS7D01G032700 chr1B 95.385 65 3 0 75 139 396252036 396252100 1.430000e-18 104.0
17 TraesCS7D01G032700 chr3B 85.238 420 23 17 1274 1686 766032144 766031757 2.100000e-106 396.0
18 TraesCS7D01G032700 chr3B 75.941 478 74 22 2429 2897 762158529 762158974 1.060000e-49 207.0
19 TraesCS7D01G032700 chr3B 80.189 212 37 4 1468 1676 630401527 630401318 1.400000e-33 154.0
20 TraesCS7D01G032700 chr3B 82.836 134 21 2 1493 1625 40908897 40908765 5.100000e-23 119.0
21 TraesCS7D01G032700 chr3B 81.343 134 11 7 1866 1988 766031651 766031521 2.390000e-16 97.1
22 TraesCS7D01G032700 chr3B 100.000 31 0 0 893 923 766032361 766032331 1.130000e-04 58.4
23 TraesCS7D01G032700 chr2D 80.000 505 70 18 2426 2903 72769284 72768784 7.730000e-91 344.0
24 TraesCS7D01G032700 chr2D 81.056 322 49 5 2599 2909 72572661 72572341 2.240000e-61 246.0
25 TraesCS7D01G032700 chr2D 95.349 129 6 0 364 492 541547401 541547529 3.810000e-49 206.0
26 TraesCS7D01G032700 chr2D 95.238 63 3 0 78 140 474745227 474745165 1.850000e-17 100.0
27 TraesCS7D01G032700 chr2D 100.000 28 0 0 2528 2555 27773933 27773960 5.000000e-03 52.8
28 TraesCS7D01G032700 chr5D 93.450 229 14 1 138 365 164651737 164651509 3.600000e-89 339.0
29 TraesCS7D01G032700 chr5D 94.615 130 7 0 363 492 123450377 123450248 4.920000e-48 202.0
30 TraesCS7D01G032700 chr2B 93.450 229 13 2 138 365 486984802 486984575 3.600000e-89 339.0
31 TraesCS7D01G032700 chr2B 83.978 181 27 2 1491 1670 776213602 776213781 3.860000e-39 172.0
32 TraesCS7D01G032700 chr2B 100.000 28 0 0 2528 2555 225812032 225812059 5.000000e-03 52.8
33 TraesCS7D01G032700 chr7B 93.722 223 14 0 136 358 431515079 431515301 4.650000e-88 335.0
34 TraesCS7D01G032700 chr7B 93.750 224 11 3 139 360 301590884 301591106 1.670000e-87 333.0
35 TraesCS7D01G032700 chr3D 94.091 220 13 0 139 358 391654346 391654565 4.650000e-88 335.0
36 TraesCS7D01G032700 chr3D 79.142 513 71 18 2414 2907 70734697 70734202 3.620000e-84 322.0
37 TraesCS7D01G032700 chr3D 92.647 136 10 0 356 491 45817912 45817777 2.290000e-46 196.0
38 TraesCS7D01G032700 chr3D 81.347 193 31 4 1488 1676 474216238 474216047 5.030000e-33 152.0
39 TraesCS7D01G032700 chr3D 82.836 134 21 2 1493 1625 23195804 23195672 5.100000e-23 119.0
40 TraesCS7D01G032700 chr3D 80.272 147 19 7 1476 1617 481702723 481702864 5.140000e-18 102.0
41 TraesCS7D01G032700 chr3D 100.000 30 0 0 2528 2557 606311871 606311842 4.060000e-04 56.5
42 TraesCS7D01G032700 chr6D 93.722 223 12 2 137 358 35626880 35627101 1.670000e-87 333.0
43 TraesCS7D01G032700 chr6D 91.358 243 17 3 119 359 329496936 329497176 2.160000e-86 329.0
44 TraesCS7D01G032700 chr6A 93.694 222 11 3 144 364 276454112 276453893 2.160000e-86 329.0
45 TraesCS7D01G032700 chr6A 95.385 65 3 0 75 139 513039621 513039685 1.430000e-18 104.0
46 TraesCS7D01G032700 chr4D 92.544 228 15 2 138 364 213305491 213305265 2.800000e-85 326.0
47 TraesCS7D01G032700 chr4D 94.574 129 7 0 364 492 115044391 115044519 1.770000e-47 200.0
48 TraesCS7D01G032700 chr4D 100.000 28 0 0 2528 2555 506336917 506336944 5.000000e-03 52.8
49 TraesCS7D01G032700 chr6B 91.525 236 17 3 139 372 211315775 211316009 3.620000e-84 322.0
50 TraesCS7D01G032700 chr6B 92.070 227 18 0 139 365 308794856 308794630 1.300000e-83 320.0
51 TraesCS7D01G032700 chr6B 95.385 65 3 0 75 139 574868445 574868509 1.430000e-18 104.0
52 TraesCS7D01G032700 chr6B 100.000 28 0 0 2528 2555 290647380 290647353 5.000000e-03 52.8
53 TraesCS7D01G032700 chr3A 96.124 129 5 0 364 492 300127617 300127489 8.180000e-51 211.0
54 TraesCS7D01G032700 chr3A 81.865 193 30 4 1488 1676 616492652 616492461 1.080000e-34 158.0
55 TraesCS7D01G032700 chr3A 100.000 30 0 0 2528 2557 449517754 449517725 4.060000e-04 56.5
56 TraesCS7D01G032700 chr2A 92.701 137 10 0 356 492 364499274 364499138 6.370000e-47 198.0
57 TraesCS7D01G032700 chr2A 90.972 144 12 1 356 499 573237690 573237548 2.960000e-45 193.0
58 TraesCS7D01G032700 chr2A 83.889 180 29 0 1491 1670 759456107 759456286 3.860000e-39 172.0
59 TraesCS7D01G032700 chr5A 90.000 150 13 2 364 512 426301635 426301487 2.960000e-45 193.0
60 TraesCS7D01G032700 chr5A 75.896 307 42 18 2452 2744 606682828 606682540 8.470000e-26 128.0
61 TraesCS7D01G032700 chr5A 95.385 65 3 0 75 139 388107901 388107837 1.430000e-18 104.0
62 TraesCS7D01G032700 chr1D 85.027 187 26 2 1492 1677 375646699 375646514 3.830000e-44 189.0
63 TraesCS7D01G032700 chr1D 80.833 240 41 5 2667 2903 342127452 342127689 1.780000e-42 183.0
64 TraesCS7D01G032700 chr1D 95.385 65 3 0 75 139 270898523 270898459 1.430000e-18 104.0
65 TraesCS7D01G032700 chr1D 95.385 65 3 0 75 139 357017756 357017820 1.430000e-18 104.0
66 TraesCS7D01G032700 chr1A 83.422 187 29 2 1492 1677 474450729 474450544 3.860000e-39 172.0
67 TraesCS7D01G032700 chr1A 96.970 66 2 0 75 140 6643120 6643055 8.530000e-21 111.0
68 TraesCS7D01G032700 chr5B 84.146 82 11 1 2492 2571 639124346 639124265 8.650000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G032700 chr7D 16910692 16913604 2912 True 5380.00 5380 100.0000 1 2913 1 chr7D.!!$R1 2912
1 TraesCS7D01G032700 chr4A 717723403 717725505 2102 True 1306.45 2549 87.3135 507 2413 2 chr4A.!!$R1 1906
2 TraesCS7D01G032700 chr7A 16163299 16165013 1714 True 2481.00 2481 92.8410 692 2413 1 chr7A.!!$R1 1721
3 TraesCS7D01G032700 chr1B 665294307 665295277 970 False 821.00 821 82.3250 1347 2385 1 chr1B.!!$F5 1038
4 TraesCS7D01G032700 chr2D 72768784 72769284 500 True 344.00 344 80.0000 2426 2903 1 chr2D.!!$R2 477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.099082 GAAGCAGTCTAGGTCGTCGG 59.901 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2389 0.325203 TCCCGGGTCTGTGATCATCA 60.325 55.0 22.86 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.760131 AGAAAATTAGCAGCTACAATCCCT 58.240 37.500 0.00 0.00 0.00 4.20
24 25 6.190587 AGAAAATTAGCAGCTACAATCCCTT 58.809 36.000 0.00 0.00 0.00 3.95
25 26 6.665248 AGAAAATTAGCAGCTACAATCCCTTT 59.335 34.615 0.00 0.00 0.00 3.11
26 27 6.857437 AAATTAGCAGCTACAATCCCTTTT 57.143 33.333 0.00 0.00 0.00 2.27
27 28 5.841957 ATTAGCAGCTACAATCCCTTTTG 57.158 39.130 0.00 0.00 0.00 2.44
28 29 3.439857 AGCAGCTACAATCCCTTTTGA 57.560 42.857 0.00 0.00 0.00 2.69
29 30 3.973425 AGCAGCTACAATCCCTTTTGAT 58.027 40.909 0.00 0.00 0.00 2.57
30 31 5.116084 AGCAGCTACAATCCCTTTTGATA 57.884 39.130 0.00 0.00 0.00 2.15
31 32 5.509498 AGCAGCTACAATCCCTTTTGATAA 58.491 37.500 0.00 0.00 0.00 1.75
32 33 5.951747 AGCAGCTACAATCCCTTTTGATAAA 59.048 36.000 0.00 0.00 0.00 1.40
33 34 6.437162 AGCAGCTACAATCCCTTTTGATAAAA 59.563 34.615 0.00 0.00 0.00 1.52
34 35 6.531594 GCAGCTACAATCCCTTTTGATAAAAC 59.468 38.462 0.00 0.00 0.00 2.43
35 36 7.601856 CAGCTACAATCCCTTTTGATAAAACA 58.398 34.615 0.00 0.00 0.00 2.83
36 37 7.756722 CAGCTACAATCCCTTTTGATAAAACAG 59.243 37.037 0.00 0.00 0.00 3.16
37 38 7.669722 AGCTACAATCCCTTTTGATAAAACAGA 59.330 33.333 0.00 0.00 0.00 3.41
38 39 8.303876 GCTACAATCCCTTTTGATAAAACAGAA 58.696 33.333 0.00 0.00 0.00 3.02
39 40 9.846248 CTACAATCCCTTTTGATAAAACAGAAG 57.154 33.333 0.00 0.00 33.62 2.85
40 41 8.250143 ACAATCCCTTTTGATAAAACAGAAGT 57.750 30.769 0.00 0.00 32.48 3.01
41 42 8.360390 ACAATCCCTTTTGATAAAACAGAAGTC 58.640 33.333 0.00 0.00 32.48 3.01
42 43 8.359642 CAATCCCTTTTGATAAAACAGAAGTCA 58.640 33.333 0.00 0.00 32.48 3.41
43 44 8.655935 ATCCCTTTTGATAAAACAGAAGTCAT 57.344 30.769 0.00 0.00 32.48 3.06
44 45 8.477419 TCCCTTTTGATAAAACAGAAGTCATT 57.523 30.769 0.00 0.00 32.48 2.57
45 46 9.581289 TCCCTTTTGATAAAACAGAAGTCATTA 57.419 29.630 0.00 0.00 32.48 1.90
72 73 6.990341 TGATGATTGTAGTCAATGTCAAGG 57.010 37.500 0.00 0.00 43.33 3.61
73 74 6.475504 TGATGATTGTAGTCAATGTCAAGGT 58.524 36.000 0.00 0.00 43.33 3.50
74 75 6.942005 TGATGATTGTAGTCAATGTCAAGGTT 59.058 34.615 0.00 0.00 43.33 3.50
75 76 8.100164 TGATGATTGTAGTCAATGTCAAGGTTA 58.900 33.333 0.00 0.00 43.33 2.85
76 77 9.113838 GATGATTGTAGTCAATGTCAAGGTTAT 57.886 33.333 0.00 0.00 43.33 1.89
85 86 8.893727 AGTCAATGTCAAGGTTATATTAAGTGC 58.106 33.333 0.00 0.00 0.00 4.40
86 87 8.673711 GTCAATGTCAAGGTTATATTAAGTGCA 58.326 33.333 0.00 0.00 0.00 4.57
87 88 9.407380 TCAATGTCAAGGTTATATTAAGTGCAT 57.593 29.630 0.00 0.00 0.00 3.96
90 91 8.360325 TGTCAAGGTTATATTAAGTGCATACG 57.640 34.615 0.00 0.00 0.00 3.06
91 92 7.439955 TGTCAAGGTTATATTAAGTGCATACGG 59.560 37.037 0.00 0.00 0.00 4.02
92 93 7.654520 GTCAAGGTTATATTAAGTGCATACGGA 59.345 37.037 0.00 0.00 0.00 4.69
93 94 8.372459 TCAAGGTTATATTAAGTGCATACGGAT 58.628 33.333 0.00 0.00 0.00 4.18
94 95 9.647797 CAAGGTTATATTAAGTGCATACGGATA 57.352 33.333 0.00 0.00 0.00 2.59
126 127 8.597662 AGGATATTATTTGCGTGTTATTACGT 57.402 30.769 0.00 0.00 45.36 3.57
127 128 8.492748 AGGATATTATTTGCGTGTTATTACGTG 58.507 33.333 0.00 0.00 45.36 4.49
128 129 8.489559 GGATATTATTTGCGTGTTATTACGTGA 58.510 33.333 0.00 0.00 45.36 4.35
132 133 9.858247 ATTATTTGCGTGTTATTACGTGATTAG 57.142 29.630 0.00 0.00 45.36 1.73
133 134 4.765281 TGCGTGTTATTACGTGATTAGC 57.235 40.909 0.00 0.00 45.36 3.09
134 135 4.174762 TGCGTGTTATTACGTGATTAGCA 58.825 39.130 0.00 1.26 45.36 3.49
135 136 4.806775 TGCGTGTTATTACGTGATTAGCAT 59.193 37.500 0.00 0.00 45.36 3.79
136 137 5.292345 TGCGTGTTATTACGTGATTAGCATT 59.708 36.000 0.00 0.00 45.36 3.56
137 138 6.476053 TGCGTGTTATTACGTGATTAGCATTA 59.524 34.615 0.00 0.00 45.36 1.90
138 139 7.170151 TGCGTGTTATTACGTGATTAGCATTAT 59.830 33.333 0.00 0.00 45.36 1.28
139 140 8.641155 GCGTGTTATTACGTGATTAGCATTATA 58.359 33.333 0.00 0.00 45.36 0.98
140 141 9.933175 CGTGTTATTACGTGATTAGCATTATAC 57.067 33.333 0.00 0.00 39.13 1.47
143 144 9.953825 GTTATTACGTGATTAGCATTATACTGC 57.046 33.333 6.96 6.96 42.62 4.40
144 145 7.596749 ATTACGTGATTAGCATTATACTGCC 57.403 36.000 11.14 0.00 43.33 4.85
145 146 5.215252 ACGTGATTAGCATTATACTGCCT 57.785 39.130 11.14 2.63 43.33 4.75
146 147 5.230942 ACGTGATTAGCATTATACTGCCTC 58.769 41.667 11.14 7.07 43.33 4.70
147 148 4.627467 CGTGATTAGCATTATACTGCCTCC 59.373 45.833 11.14 0.65 43.33 4.30
148 149 4.627467 GTGATTAGCATTATACTGCCTCCG 59.373 45.833 11.14 0.00 43.33 4.63
149 150 4.283467 TGATTAGCATTATACTGCCTCCGT 59.717 41.667 11.14 0.00 43.33 4.69
150 151 4.682778 TTAGCATTATACTGCCTCCGTT 57.317 40.909 11.14 0.00 43.33 4.44
151 152 3.560636 AGCATTATACTGCCTCCGTTT 57.439 42.857 11.14 0.00 43.33 3.60
152 153 3.467803 AGCATTATACTGCCTCCGTTTC 58.532 45.455 11.14 0.00 43.33 2.78
153 154 3.118408 AGCATTATACTGCCTCCGTTTCA 60.118 43.478 11.14 0.00 43.33 2.69
154 155 3.248602 GCATTATACTGCCTCCGTTTCAG 59.751 47.826 3.75 0.00 36.10 3.02
155 156 4.442706 CATTATACTGCCTCCGTTTCAGT 58.557 43.478 0.00 0.00 42.89 3.41
156 157 4.546829 TTATACTGCCTCCGTTTCAGTT 57.453 40.909 0.00 0.00 40.96 3.16
157 158 2.922740 TACTGCCTCCGTTTCAGTTT 57.077 45.000 0.00 0.00 40.96 2.66
158 159 2.922740 ACTGCCTCCGTTTCAGTTTA 57.077 45.000 0.00 0.00 37.78 2.01
159 160 2.490991 ACTGCCTCCGTTTCAGTTTAC 58.509 47.619 0.00 0.00 37.78 2.01
160 161 2.158871 ACTGCCTCCGTTTCAGTTTACA 60.159 45.455 0.00 0.00 37.78 2.41
161 162 2.875933 CTGCCTCCGTTTCAGTTTACAA 59.124 45.455 0.00 0.00 0.00 2.41
162 163 2.875933 TGCCTCCGTTTCAGTTTACAAG 59.124 45.455 0.00 0.00 0.00 3.16
163 164 2.876550 GCCTCCGTTTCAGTTTACAAGT 59.123 45.455 0.00 0.00 0.00 3.16
164 165 3.059120 GCCTCCGTTTCAGTTTACAAGTC 60.059 47.826 0.00 0.00 0.00 3.01
165 166 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
166 167 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
167 168 4.124238 TCCGTTTCAGTTTACAAGTCCTG 58.876 43.478 0.00 0.00 0.00 3.86
168 169 3.875134 CCGTTTCAGTTTACAAGTCCTGT 59.125 43.478 0.00 0.00 42.47 4.00
169 170 5.051816 CCGTTTCAGTTTACAAGTCCTGTA 58.948 41.667 0.00 0.00 39.64 2.74
170 171 5.176958 CCGTTTCAGTTTACAAGTCCTGTAG 59.823 44.000 0.00 0.00 41.57 2.74
171 172 5.981315 CGTTTCAGTTTACAAGTCCTGTAGA 59.019 40.000 0.00 0.00 41.57 2.59
172 173 6.645415 CGTTTCAGTTTACAAGTCCTGTAGAT 59.355 38.462 0.00 0.00 41.57 1.98
173 174 7.811236 CGTTTCAGTTTACAAGTCCTGTAGATA 59.189 37.037 0.00 0.00 41.57 1.98
174 175 9.654663 GTTTCAGTTTACAAGTCCTGTAGATAT 57.345 33.333 0.00 0.00 41.57 1.63
177 178 8.910944 TCAGTTTACAAGTCCTGTAGATATACC 58.089 37.037 0.00 0.00 41.57 2.73
178 179 8.915036 CAGTTTACAAGTCCTGTAGATATACCT 58.085 37.037 0.00 0.00 41.57 3.08
181 182 9.584008 TTTACAAGTCCTGTAGATATACCTAGG 57.416 37.037 7.41 7.41 41.57 3.02
182 183 7.164233 ACAAGTCCTGTAGATATACCTAGGT 57.836 40.000 20.57 20.57 36.10 3.08
183 184 7.593653 ACAAGTCCTGTAGATATACCTAGGTT 58.406 38.462 22.11 10.62 36.10 3.50
184 185 7.506261 ACAAGTCCTGTAGATATACCTAGGTTG 59.494 40.741 22.11 8.61 36.10 3.77
185 186 6.011481 AGTCCTGTAGATATACCTAGGTTGC 58.989 44.000 22.11 5.66 0.00 4.17
186 187 5.185442 GTCCTGTAGATATACCTAGGTTGCC 59.815 48.000 22.11 7.42 0.00 4.52
187 188 5.084519 CCTGTAGATATACCTAGGTTGCCA 58.915 45.833 22.11 1.21 0.00 4.92
188 189 5.542635 CCTGTAGATATACCTAGGTTGCCAA 59.457 44.000 22.11 0.75 0.00 4.52
189 190 6.213600 CCTGTAGATATACCTAGGTTGCCAAT 59.786 42.308 22.11 9.64 0.00 3.16
190 191 7.256691 CCTGTAGATATACCTAGGTTGCCAATT 60.257 40.741 22.11 3.16 0.00 2.32
191 192 8.041143 TGTAGATATACCTAGGTTGCCAATTT 57.959 34.615 22.11 1.74 0.00 1.82
192 193 8.499406 TGTAGATATACCTAGGTTGCCAATTTT 58.501 33.333 22.11 0.00 0.00 1.82
195 196 9.740710 AGATATACCTAGGTTGCCAATTTTATC 57.259 33.333 22.11 7.17 0.00 1.75
196 197 9.515226 GATATACCTAGGTTGCCAATTTTATCA 57.485 33.333 22.11 0.00 0.00 2.15
197 198 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
198 199 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
199 200 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
200 201 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
201 202 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
202 203 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
203 204 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
204 205 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
205 206 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
206 207 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
254 255 8.599055 ACCTTTTAAAAGTAGAAACTCCGTAG 57.401 34.615 23.04 7.98 33.75 3.51
255 256 8.206867 ACCTTTTAAAAGTAGAAACTCCGTAGT 58.793 33.333 23.04 8.52 33.75 2.73
256 257 9.049523 CCTTTTAAAAGTAGAAACTCCGTAGTT 57.950 33.333 23.04 0.00 39.74 2.24
267 268 4.612264 ACTCCGTAGTTTATGTTGGTGT 57.388 40.909 0.00 0.00 29.00 4.16
268 269 5.726980 ACTCCGTAGTTTATGTTGGTGTA 57.273 39.130 0.00 0.00 29.00 2.90
269 270 6.290294 ACTCCGTAGTTTATGTTGGTGTAT 57.710 37.500 0.00 0.00 29.00 2.29
270 271 6.704310 ACTCCGTAGTTTATGTTGGTGTATT 58.296 36.000 0.00 0.00 29.00 1.89
271 272 7.163441 ACTCCGTAGTTTATGTTGGTGTATTT 58.837 34.615 0.00 0.00 29.00 1.40
272 273 7.662669 ACTCCGTAGTTTATGTTGGTGTATTTT 59.337 33.333 0.00 0.00 29.00 1.82
273 274 8.393671 TCCGTAGTTTATGTTGGTGTATTTTT 57.606 30.769 0.00 0.00 0.00 1.94
303 304 9.706691 AATATATGACTTGTATTAGGTTGGTCG 57.293 33.333 0.00 0.00 0.00 4.79
304 305 5.670792 ATGACTTGTATTAGGTTGGTCGA 57.329 39.130 0.00 0.00 0.00 4.20
305 306 5.471556 TGACTTGTATTAGGTTGGTCGAA 57.528 39.130 0.00 0.00 0.00 3.71
306 307 6.045072 TGACTTGTATTAGGTTGGTCGAAT 57.955 37.500 0.00 0.00 0.00 3.34
307 308 6.469410 TGACTTGTATTAGGTTGGTCGAATT 58.531 36.000 0.00 0.00 0.00 2.17
308 309 6.370442 TGACTTGTATTAGGTTGGTCGAATTG 59.630 38.462 0.00 0.00 0.00 2.32
309 310 6.469410 ACTTGTATTAGGTTGGTCGAATTGA 58.531 36.000 0.00 0.00 0.00 2.57
320 321 1.108776 TCGAATTGACGACCTAGGGG 58.891 55.000 14.81 7.16 37.37 4.79
321 322 1.108776 CGAATTGACGACCTAGGGGA 58.891 55.000 14.81 0.00 36.25 4.81
322 323 1.479323 CGAATTGACGACCTAGGGGAA 59.521 52.381 14.81 0.00 36.25 3.97
323 324 2.737679 CGAATTGACGACCTAGGGGAAC 60.738 54.545 14.81 2.61 36.25 3.62
324 325 0.822164 ATTGACGACCTAGGGGAACG 59.178 55.000 14.81 14.81 39.79 3.95
325 326 1.880819 TTGACGACCTAGGGGAACGC 61.881 60.000 14.81 9.66 43.76 4.84
338 339 4.973055 AACGCGCACGCCCAGTAA 62.973 61.111 5.73 0.00 45.53 2.24
339 340 4.973055 ACGCGCACGCCCAGTAAA 62.973 61.111 5.73 0.00 45.53 2.01
340 341 4.439472 CGCGCACGCCCAGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
341 342 3.047877 GCGCACGCCCAGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
342 343 2.860293 CGCACGCCCAGTAAACTG 59.140 61.111 3.02 3.02 43.40 3.16
343 344 1.666553 CGCACGCCCAGTAAACTGA 60.667 57.895 11.69 0.00 46.59 3.41
344 345 1.626654 CGCACGCCCAGTAAACTGAG 61.627 60.000 11.69 0.00 46.59 3.35
345 346 0.320421 GCACGCCCAGTAAACTGAGA 60.320 55.000 11.69 0.00 46.59 3.27
346 347 1.714794 CACGCCCAGTAAACTGAGAG 58.285 55.000 11.69 2.80 46.59 3.20
347 348 1.272490 CACGCCCAGTAAACTGAGAGA 59.728 52.381 11.69 0.00 46.59 3.10
348 349 1.546476 ACGCCCAGTAAACTGAGAGAG 59.454 52.381 11.69 4.72 46.59 3.20
349 350 1.819288 CGCCCAGTAAACTGAGAGAGA 59.181 52.381 11.69 0.00 46.59 3.10
350 351 2.159310 CGCCCAGTAAACTGAGAGAGAG 60.159 54.545 11.69 0.00 46.59 3.20
351 352 2.167487 GCCCAGTAAACTGAGAGAGAGG 59.833 54.545 11.69 3.70 46.59 3.69
352 353 3.436243 CCCAGTAAACTGAGAGAGAGGT 58.564 50.000 11.69 0.00 46.59 3.85
353 354 4.601084 CCCAGTAAACTGAGAGAGAGGTA 58.399 47.826 11.69 0.00 46.59 3.08
354 355 4.642885 CCCAGTAAACTGAGAGAGAGGTAG 59.357 50.000 11.69 0.00 46.59 3.18
355 356 5.258051 CCAGTAAACTGAGAGAGAGGTAGT 58.742 45.833 11.69 0.00 46.59 2.73
356 357 6.416415 CCAGTAAACTGAGAGAGAGGTAGTA 58.584 44.000 11.69 0.00 46.59 1.82
357 358 7.057894 CCAGTAAACTGAGAGAGAGGTAGTAT 58.942 42.308 11.69 0.00 46.59 2.12
358 359 7.558444 CCAGTAAACTGAGAGAGAGGTAGTATT 59.442 40.741 11.69 0.00 46.59 1.89
359 360 8.962679 CAGTAAACTGAGAGAGAGGTAGTATTT 58.037 37.037 3.99 0.00 46.59 1.40
360 361 9.181061 AGTAAACTGAGAGAGAGGTAGTATTTC 57.819 37.037 0.00 0.00 0.00 2.17
361 362 8.958506 GTAAACTGAGAGAGAGGTAGTATTTCA 58.041 37.037 0.00 0.00 0.00 2.69
362 363 8.602472 AAACTGAGAGAGAGGTAGTATTTCAT 57.398 34.615 0.00 0.00 0.00 2.57
363 364 9.702253 AAACTGAGAGAGAGGTAGTATTTCATA 57.298 33.333 0.00 0.00 0.00 2.15
364 365 9.875708 AACTGAGAGAGAGGTAGTATTTCATAT 57.124 33.333 0.00 0.00 0.00 1.78
365 366 9.295825 ACTGAGAGAGAGGTAGTATTTCATATG 57.704 37.037 0.00 0.00 0.00 1.78
366 367 9.513906 CTGAGAGAGAGGTAGTATTTCATATGA 57.486 37.037 0.00 0.00 0.00 2.15
398 399 3.174799 CACTAAAAGTGTTGAGCGCTC 57.825 47.619 30.42 30.42 41.19 5.03
399 400 1.792949 ACTAAAAGTGTTGAGCGCTCG 59.207 47.619 30.75 15.43 36.85 5.03
400 401 2.058798 CTAAAAGTGTTGAGCGCTCGA 58.941 47.619 30.75 27.40 36.85 4.04
401 402 0.582005 AAAAGTGTTGAGCGCTCGAC 59.418 50.000 39.44 39.44 42.86 4.20
404 405 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
405 406 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
406 407 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
407 408 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
408 409 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
409 410 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
410 411 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
411 412 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
412 413 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
413 414 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
414 415 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
415 416 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
416 417 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
417 418 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
418 419 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
419 420 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
420 421 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
421 422 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
422 423 3.182967 CATTGAAGCAGTCTAGGTCGTC 58.817 50.000 0.00 0.00 0.00 4.20
423 424 0.803117 TGAAGCAGTCTAGGTCGTCG 59.197 55.000 0.00 0.00 0.00 5.12
424 425 0.099082 GAAGCAGTCTAGGTCGTCGG 59.901 60.000 0.00 0.00 0.00 4.79
425 426 0.322277 AAGCAGTCTAGGTCGTCGGA 60.322 55.000 0.00 0.00 0.00 4.55
426 427 0.107116 AGCAGTCTAGGTCGTCGGAT 60.107 55.000 0.00 0.00 0.00 4.18
427 428 0.739561 GCAGTCTAGGTCGTCGGATT 59.260 55.000 0.00 0.00 0.00 3.01
428 429 1.534175 GCAGTCTAGGTCGTCGGATTG 60.534 57.143 0.00 0.00 0.00 2.67
429 430 2.014857 CAGTCTAGGTCGTCGGATTGA 58.985 52.381 0.00 0.00 0.00 2.57
430 431 2.015587 AGTCTAGGTCGTCGGATTGAC 58.984 52.381 5.15 5.15 44.53 3.18
443 444 3.316029 TCGGATTGACATGATTTGATGGC 59.684 43.478 0.00 0.00 0.00 4.40
444 445 3.551454 CGGATTGACATGATTTGATGGCC 60.551 47.826 0.00 0.00 29.16 5.36
445 446 3.551454 GGATTGACATGATTTGATGGCCG 60.551 47.826 0.00 0.00 29.16 6.13
446 447 2.416680 TGACATGATTTGATGGCCGA 57.583 45.000 0.00 0.00 29.16 5.54
447 448 2.291365 TGACATGATTTGATGGCCGAG 58.709 47.619 0.00 0.00 29.16 4.63
448 449 2.093021 TGACATGATTTGATGGCCGAGA 60.093 45.455 0.00 0.00 29.16 4.04
449 450 3.144506 GACATGATTTGATGGCCGAGAT 58.855 45.455 0.00 0.00 0.00 2.75
450 451 3.559069 ACATGATTTGATGGCCGAGATT 58.441 40.909 0.00 0.00 0.00 2.40
451 452 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
452 453 5.132502 ACATGATTTGATGGCCGAGATTAA 58.867 37.500 0.00 0.00 0.00 1.40
453 454 5.771666 ACATGATTTGATGGCCGAGATTAAT 59.228 36.000 0.00 0.00 0.00 1.40
454 455 6.266103 ACATGATTTGATGGCCGAGATTAATT 59.734 34.615 0.00 0.00 0.00 1.40
455 456 6.075762 TGATTTGATGGCCGAGATTAATTG 57.924 37.500 0.00 0.00 0.00 2.32
456 457 4.916983 TTTGATGGCCGAGATTAATTGG 57.083 40.909 0.00 0.00 0.00 3.16
457 458 3.855255 TGATGGCCGAGATTAATTGGA 57.145 42.857 0.00 0.00 0.00 3.53
458 459 4.371624 TGATGGCCGAGATTAATTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
459 460 4.326826 TGATGGCCGAGATTAATTGGATC 58.673 43.478 0.00 0.00 0.00 3.36
460 461 3.855255 TGGCCGAGATTAATTGGATCA 57.145 42.857 0.00 2.34 0.00 2.92
461 462 3.743521 TGGCCGAGATTAATTGGATCAG 58.256 45.455 0.00 1.50 0.00 2.90
462 463 2.485814 GGCCGAGATTAATTGGATCAGC 59.514 50.000 0.00 5.93 0.00 4.26
463 464 2.485814 GCCGAGATTAATTGGATCAGCC 59.514 50.000 0.00 0.00 37.10 4.85
464 465 3.077359 CCGAGATTAATTGGATCAGCCC 58.923 50.000 0.00 0.00 34.97 5.19
465 466 3.077359 CGAGATTAATTGGATCAGCCCC 58.923 50.000 0.00 0.00 34.97 5.80
466 467 3.244700 CGAGATTAATTGGATCAGCCCCT 60.245 47.826 0.00 0.00 34.97 4.79
467 468 4.734266 GAGATTAATTGGATCAGCCCCTT 58.266 43.478 0.00 0.00 34.97 3.95
468 469 5.143369 GAGATTAATTGGATCAGCCCCTTT 58.857 41.667 0.00 0.00 34.97 3.11
469 470 4.897670 AGATTAATTGGATCAGCCCCTTTG 59.102 41.667 0.00 0.00 34.97 2.77
470 471 1.870064 AATTGGATCAGCCCCTTTGG 58.130 50.000 0.00 0.00 34.97 3.28
485 486 5.914898 CCCTTTGGGTCTTTTTATAGTGG 57.085 43.478 0.00 0.00 38.25 4.00
486 487 5.330233 CCCTTTGGGTCTTTTTATAGTGGT 58.670 41.667 0.00 0.00 38.25 4.16
487 488 6.486941 CCCTTTGGGTCTTTTTATAGTGGTA 58.513 40.000 0.00 0.00 38.25 3.25
488 489 7.123383 CCCTTTGGGTCTTTTTATAGTGGTAT 58.877 38.462 0.00 0.00 38.25 2.73
489 490 8.276477 CCCTTTGGGTCTTTTTATAGTGGTATA 58.724 37.037 0.00 0.00 38.25 1.47
490 491 9.338622 CCTTTGGGTCTTTTTATAGTGGTATAG 57.661 37.037 0.00 0.00 0.00 1.31
492 493 9.895138 TTTGGGTCTTTTTATAGTGGTATAGAC 57.105 33.333 0.00 0.00 0.00 2.59
493 494 7.719483 TGGGTCTTTTTATAGTGGTATAGACG 58.281 38.462 0.00 0.00 0.00 4.18
494 495 6.644181 GGGTCTTTTTATAGTGGTATAGACGC 59.356 42.308 0.00 0.00 0.00 5.19
495 496 7.205297 GGTCTTTTTATAGTGGTATAGACGCA 58.795 38.462 0.00 0.00 0.00 5.24
496 497 7.871463 GGTCTTTTTATAGTGGTATAGACGCAT 59.129 37.037 0.00 0.00 0.00 4.73
497 498 9.257651 GTCTTTTTATAGTGGTATAGACGCATT 57.742 33.333 0.00 0.00 0.00 3.56
498 499 9.826574 TCTTTTTATAGTGGTATAGACGCATTT 57.173 29.630 0.00 0.00 0.00 2.32
500 501 9.826574 TTTTTATAGTGGTATAGACGCATTTCT 57.173 29.630 0.00 0.00 0.00 2.52
501 502 9.826574 TTTTATAGTGGTATAGACGCATTTCTT 57.173 29.630 0.00 0.00 0.00 2.52
503 504 9.903682 TTATAGTGGTATAGACGCATTTCTTAC 57.096 33.333 0.00 0.00 0.00 2.34
504 505 6.216801 AGTGGTATAGACGCATTTCTTACA 57.783 37.500 0.00 0.00 0.00 2.41
505 506 6.636705 AGTGGTATAGACGCATTTCTTACAA 58.363 36.000 0.00 0.00 0.00 2.41
506 507 6.534079 AGTGGTATAGACGCATTTCTTACAAC 59.466 38.462 0.00 0.00 0.00 3.32
507 508 6.311935 GTGGTATAGACGCATTTCTTACAACA 59.688 38.462 0.00 0.00 0.00 3.33
508 509 6.874664 TGGTATAGACGCATTTCTTACAACAA 59.125 34.615 0.00 0.00 0.00 2.83
509 510 7.064134 TGGTATAGACGCATTTCTTACAACAAG 59.936 37.037 0.00 0.00 0.00 3.16
510 511 4.147219 AGACGCATTTCTTACAACAAGC 57.853 40.909 0.00 0.00 0.00 4.01
511 512 3.815401 AGACGCATTTCTTACAACAAGCT 59.185 39.130 0.00 0.00 0.00 3.74
512 513 4.994852 AGACGCATTTCTTACAACAAGCTA 59.005 37.500 0.00 0.00 0.00 3.32
513 514 5.468746 AGACGCATTTCTTACAACAAGCTAA 59.531 36.000 0.00 0.00 0.00 3.09
514 515 5.689819 ACGCATTTCTTACAACAAGCTAAG 58.310 37.500 0.00 0.00 0.00 2.18
515 516 5.468746 ACGCATTTCTTACAACAAGCTAAGA 59.531 36.000 0.00 0.00 0.00 2.10
516 517 6.017933 CGCATTTCTTACAACAAGCTAAGAG 58.982 40.000 0.00 0.00 32.00 2.85
521 522 7.941795 TTCTTACAACAAGCTAAGAGTACAC 57.058 36.000 0.00 0.00 32.00 2.90
551 552 6.214191 TGGTGTTTTTCTTAATGTGAAGCA 57.786 33.333 0.00 0.00 0.00 3.91
554 555 6.417930 GGTGTTTTTCTTAATGTGAAGCAGAC 59.582 38.462 0.00 0.00 0.00 3.51
561 562 7.525688 TCTTAATGTGAAGCAGACTATTTCG 57.474 36.000 0.00 0.00 0.00 3.46
562 563 7.320399 TCTTAATGTGAAGCAGACTATTTCGA 58.680 34.615 0.00 0.00 0.00 3.71
564 565 5.980698 ATGTGAAGCAGACTATTTCGATG 57.019 39.130 0.00 0.00 0.00 3.84
580 585 2.487762 TCGATGTTTTGGCACTGGATTC 59.512 45.455 0.00 0.00 0.00 2.52
593 779 4.572795 GCACTGGATTCTTTTACTAGCTCC 59.427 45.833 0.00 0.00 0.00 4.70
600 786 0.910566 TTTTACTAGCTCCGCCCCCA 60.911 55.000 0.00 0.00 0.00 4.96
618 809 0.883833 CAGCATGGTGTCTGGGTTTC 59.116 55.000 16.80 0.00 0.00 2.78
654 845 4.093952 CAGCGCTTGCCCTCGTTG 62.094 66.667 7.50 0.00 40.41 4.10
655 846 4.626081 AGCGCTTGCCCTCGTTGT 62.626 61.111 2.64 0.00 40.41 3.32
658 849 2.980233 GCTTGCCCTCGTTGTGCT 60.980 61.111 0.00 0.00 0.00 4.40
659 850 2.555547 GCTTGCCCTCGTTGTGCTT 61.556 57.895 0.00 0.00 0.00 3.91
660 851 1.234615 GCTTGCCCTCGTTGTGCTTA 61.235 55.000 0.00 0.00 0.00 3.09
662 853 1.234615 TTGCCCTCGTTGTGCTTAGC 61.235 55.000 0.00 0.00 0.00 3.09
663 854 2.740714 GCCCTCGTTGTGCTTAGCG 61.741 63.158 0.00 0.00 0.00 4.26
664 855 2.100631 CCCTCGTTGTGCTTAGCGG 61.101 63.158 0.00 0.00 0.00 5.52
665 856 2.740714 CCTCGTTGTGCTTAGCGGC 61.741 63.158 0.00 0.00 0.00 6.53
666 857 2.740714 CTCGTTGTGCTTAGCGGCC 61.741 63.158 0.00 0.00 0.00 6.13
667 858 3.047280 CGTTGTGCTTAGCGGCCA 61.047 61.111 2.24 0.00 0.00 5.36
807 1004 1.376609 CGGGCAAAGCTATCCACCAC 61.377 60.000 0.00 0.00 0.00 4.16
808 1005 1.037579 GGGCAAAGCTATCCACCACC 61.038 60.000 0.00 0.00 0.00 4.61
809 1006 0.323360 GGCAAAGCTATCCACCACCA 60.323 55.000 0.00 0.00 0.00 4.17
810 1007 0.811281 GCAAAGCTATCCACCACCAC 59.189 55.000 0.00 0.00 0.00 4.16
811 1008 1.463674 CAAAGCTATCCACCACCACC 58.536 55.000 0.00 0.00 0.00 4.61
812 1009 1.072266 AAAGCTATCCACCACCACCA 58.928 50.000 0.00 0.00 0.00 4.17
816 1013 1.573108 CTATCCACCACCACCAGAGT 58.427 55.000 0.00 0.00 0.00 3.24
964 1167 0.315568 CTCCTTCCTCGCGGATAAGG 59.684 60.000 21.05 21.05 39.58 2.69
978 1181 2.584873 ATAAGGCTCCGTCCCTCCGT 62.585 60.000 0.00 0.00 0.00 4.69
1018 1232 3.686098 ATGGCCTCTCAGGGAGCGA 62.686 63.158 3.32 0.00 40.57 4.93
1251 1465 3.717924 CTACGCCGGGGAGGACTCT 62.718 68.421 27.23 2.79 45.00 3.24
1344 1564 4.729918 AAGGGCTGCTCCAAGGCG 62.730 66.667 0.00 0.00 43.45 5.52
1420 1646 7.544915 ACGTACTTATACAAGAAAGAAAGCTCC 59.455 37.037 0.00 0.00 35.60 4.70
1427 1653 1.134670 AGAAAGAAAGCTCCGATCGGG 60.135 52.381 32.79 23.49 35.59 5.14
1918 2155 0.461516 CTCCGCATCAGTGAGCATGT 60.462 55.000 12.88 0.00 0.00 3.21
2036 2282 7.434897 TGTTCTTTCTTGATTGATTCGTTTTGG 59.565 33.333 0.00 0.00 0.00 3.28
2061 2307 0.101399 CGTCCGTTCCTCATCCTCTG 59.899 60.000 0.00 0.00 0.00 3.35
2098 2344 1.783140 CGCCGGCGAATAAGTAAGTAC 59.217 52.381 44.86 0.00 42.83 2.73
2110 2358 9.297586 CGAATAAGTAAGTACTATTTGCTGACA 57.702 33.333 0.00 0.00 34.99 3.58
2133 2387 7.220030 ACAGTTGCAAGTGCTAGCTTATATAT 58.780 34.615 29.87 6.75 42.66 0.86
2134 2388 8.367911 ACAGTTGCAAGTGCTAGCTTATATATA 58.632 33.333 29.87 0.00 42.66 0.86
2135 2389 9.376075 CAGTTGCAAGTGCTAGCTTATATATAT 57.624 33.333 20.76 0.00 42.66 0.86
2136 2390 9.376075 AGTTGCAAGTGCTAGCTTATATATATG 57.624 33.333 17.23 3.58 42.66 1.78
2137 2391 9.371136 GTTGCAAGTGCTAGCTTATATATATGA 57.629 33.333 17.23 0.00 42.66 2.15
2323 2586 3.422417 TGTCTCTGCTCGTATAAGCAC 57.578 47.619 0.00 0.00 47.00 4.40
2326 2589 0.591488 TCTGCTCGTATAAGCACGCG 60.591 55.000 3.53 3.53 47.00 6.01
2385 2648 6.263516 TCATCTCTGAATGCTTTCTTTTGG 57.736 37.500 12.96 0.57 32.78 3.28
2404 2667 2.754375 CCCAAACCTGGCCGTACT 59.246 61.111 0.00 0.00 41.99 2.73
2413 2676 0.532573 CTGGCCGTACTGAGACATGT 59.467 55.000 0.00 0.00 0.00 3.21
2414 2677 0.973632 TGGCCGTACTGAGACATGTT 59.026 50.000 0.00 0.00 0.00 2.71
2415 2678 1.337728 TGGCCGTACTGAGACATGTTG 60.338 52.381 0.00 0.00 0.00 3.33
2416 2679 1.067142 GGCCGTACTGAGACATGTTGA 60.067 52.381 0.00 0.00 0.00 3.18
2417 2680 2.611971 GGCCGTACTGAGACATGTTGAA 60.612 50.000 0.00 0.00 0.00 2.69
2418 2681 2.412089 GCCGTACTGAGACATGTTGAAC 59.588 50.000 0.00 0.00 0.00 3.18
2419 2682 2.993899 CCGTACTGAGACATGTTGAACC 59.006 50.000 0.00 0.00 0.00 3.62
2420 2683 3.554129 CCGTACTGAGACATGTTGAACCA 60.554 47.826 0.00 0.00 0.00 3.67
2421 2684 4.245660 CGTACTGAGACATGTTGAACCAT 58.754 43.478 0.00 0.00 0.00 3.55
2422 2685 4.690748 CGTACTGAGACATGTTGAACCATT 59.309 41.667 0.00 0.00 0.00 3.16
2423 2686 5.867174 CGTACTGAGACATGTTGAACCATTA 59.133 40.000 0.00 0.00 0.00 1.90
2424 2687 6.367695 CGTACTGAGACATGTTGAACCATTAA 59.632 38.462 0.00 0.00 0.00 1.40
2425 2688 7.064609 CGTACTGAGACATGTTGAACCATTAAT 59.935 37.037 0.00 0.00 0.00 1.40
2426 2689 7.765695 ACTGAGACATGTTGAACCATTAATT 57.234 32.000 0.00 0.00 0.00 1.40
2427 2690 8.181904 ACTGAGACATGTTGAACCATTAATTT 57.818 30.769 0.00 0.00 0.00 1.82
2428 2691 8.084073 ACTGAGACATGTTGAACCATTAATTTG 58.916 33.333 0.00 0.00 0.00 2.32
2429 2692 7.377398 TGAGACATGTTGAACCATTAATTTGG 58.623 34.615 0.00 0.00 42.82 3.28
2433 2696 3.008485 TGTTGAACCATTAATTTGGGGCC 59.992 43.478 0.00 0.00 41.35 5.80
2461 2724 1.087501 GTCCGTGGGCAGATCTTTTC 58.912 55.000 0.00 0.00 0.00 2.29
2465 2728 2.295909 CCGTGGGCAGATCTTTTCAAAA 59.704 45.455 0.00 0.00 0.00 2.44
2478 2741 4.935808 TCTTTTCAAAAGATCCGTAGCCTC 59.064 41.667 8.60 0.00 0.00 4.70
2482 2745 1.381928 AAAGATCCGTAGCCTCGCGA 61.382 55.000 9.26 9.26 0.00 5.87
2483 2746 1.787057 AAGATCCGTAGCCTCGCGAG 61.787 60.000 29.06 29.06 0.00 5.03
2495 2758 0.877743 CTCGCGAGCCATCAGATCTA 59.122 55.000 25.07 0.00 0.00 1.98
2499 2762 2.352127 CGCGAGCCATCAGATCTAATCA 60.352 50.000 0.00 0.00 0.00 2.57
2501 2764 4.060900 GCGAGCCATCAGATCTAATCAAA 58.939 43.478 0.00 0.00 0.00 2.69
2502 2765 4.084118 GCGAGCCATCAGATCTAATCAAAC 60.084 45.833 0.00 0.00 0.00 2.93
2507 2770 5.119898 GCCATCAGATCTAATCAAACTAGCG 59.880 44.000 0.00 0.00 0.00 4.26
2510 2773 4.342378 TCAGATCTAATCAAACTAGCGGCT 59.658 41.667 7.98 7.98 0.00 5.52
2512 2775 4.342378 AGATCTAATCAAACTAGCGGCTGA 59.658 41.667 13.86 1.55 0.00 4.26
2525 2788 1.063806 CGGCTGAACGTCTTCTTCTG 58.936 55.000 0.00 0.00 0.00 3.02
2538 2801 4.501921 GTCTTCTTCTGCTTTGCAACAAAG 59.498 41.667 14.26 14.26 38.41 2.77
2539 2802 4.398988 TCTTCTTCTGCTTTGCAACAAAGA 59.601 37.500 21.06 0.00 38.41 2.52
2542 2805 4.338964 TCTTCTGCTTTGCAACAAAGATCA 59.661 37.500 21.06 10.89 38.41 2.92
2571 2834 5.040635 CAGAAACATTTGCAACGTAGGTTT 58.959 37.500 11.06 11.06 32.98 3.27
2572 2835 5.518487 CAGAAACATTTGCAACGTAGGTTTT 59.482 36.000 12.17 0.00 32.98 2.43
2573 2836 6.693545 CAGAAACATTTGCAACGTAGGTTTTA 59.306 34.615 12.17 0.00 32.98 1.52
2574 2837 7.221067 CAGAAACATTTGCAACGTAGGTTTTAA 59.779 33.333 12.17 0.00 32.98 1.52
2575 2838 6.815672 AACATTTGCAACGTAGGTTTTAAC 57.184 33.333 0.00 0.00 32.98 2.01
2576 2839 5.892568 ACATTTGCAACGTAGGTTTTAACA 58.107 33.333 0.00 0.00 32.98 2.41
2578 2841 7.649973 ACATTTGCAACGTAGGTTTTAACATA 58.350 30.769 0.00 0.00 32.98 2.29
2581 2844 8.563289 TTTGCAACGTAGGTTTTAACATAAAG 57.437 30.769 0.00 0.00 32.98 1.85
2582 2845 7.261829 TGCAACGTAGGTTTTAACATAAAGT 57.738 32.000 0.00 0.00 32.98 2.66
2583 2846 7.705214 TGCAACGTAGGTTTTAACATAAAGTT 58.295 30.769 0.00 0.62 38.07 2.66
2584 2847 7.644551 TGCAACGTAGGTTTTAACATAAAGTTG 59.355 33.333 20.25 20.25 42.33 3.16
2585 2848 7.644945 GCAACGTAGGTTTTAACATAAAGTTGT 59.355 33.333 22.60 5.74 41.95 3.32
2586 2849 8.949953 CAACGTAGGTTTTAACATAAAGTTGTG 58.050 33.333 18.30 5.73 39.03 3.33
2587 2850 8.212317 ACGTAGGTTTTAACATAAAGTTGTGT 57.788 30.769 0.00 0.00 41.50 3.72
2588 2851 8.337532 ACGTAGGTTTTAACATAAAGTTGTGTC 58.662 33.333 0.00 0.00 41.50 3.67
2589 2852 8.336806 CGTAGGTTTTAACATAAAGTTGTGTCA 58.663 33.333 0.00 0.00 41.50 3.58
2592 2855 8.141268 AGGTTTTAACATAAAGTTGTGTCATGG 58.859 33.333 0.00 0.00 41.50 3.66
2593 2856 7.383843 GGTTTTAACATAAAGTTGTGTCATGGG 59.616 37.037 0.00 0.00 41.50 4.00
2594 2857 7.825331 TTTAACATAAAGTTGTGTCATGGGA 57.175 32.000 0.00 0.00 41.50 4.37
2595 2858 8.415950 TTTAACATAAAGTTGTGTCATGGGAT 57.584 30.769 0.00 0.00 41.50 3.85
2596 2859 6.916360 AACATAAAGTTGTGTCATGGGATT 57.084 33.333 0.00 0.00 39.49 3.01
2597 2860 6.916360 ACATAAAGTTGTGTCATGGGATTT 57.084 33.333 0.00 0.00 0.00 2.17
2628 2891 5.475273 CAACATAGATTGTGTTGCGAGAT 57.525 39.130 6.12 0.00 46.64 2.75
2631 2932 5.872635 ACATAGATTGTGTTGCGAGATTTG 58.127 37.500 0.00 0.00 37.11 2.32
2643 2944 4.864633 TGCGAGATTTGTTTGCAACATAA 58.135 34.783 0.00 0.00 41.79 1.90
2647 2948 6.398935 GCGAGATTTGTTTGCAACATAAGTTC 60.399 38.462 0.00 0.00 41.79 3.01
2708 3011 3.208747 ACAAGGGTAGTGTTGTGGAAG 57.791 47.619 0.00 0.00 35.55 3.46
2716 3019 5.449999 GGGTAGTGTTGTGGAAGAACTTTTG 60.450 44.000 0.00 0.00 41.31 2.44
2724 3027 5.830912 TGTGGAAGAACTTTTGCAACATAG 58.169 37.500 0.00 0.00 29.97 2.23
2726 3029 4.237724 GGAAGAACTTTTGCAACATAGGC 58.762 43.478 0.00 0.00 0.00 3.93
2758 3061 6.364706 GCAGAAAACATATAGATGAGAGACGG 59.635 42.308 3.93 0.00 36.48 4.79
2762 3065 7.825331 AAACATATAGATGAGAGACGGAGAA 57.175 36.000 3.93 0.00 36.48 2.87
2769 3072 1.540267 TGAGAGACGGAGAAAGGAACG 59.460 52.381 0.00 0.00 0.00 3.95
2770 3073 0.244178 AGAGACGGAGAAAGGAACGC 59.756 55.000 0.00 0.00 0.00 4.84
2776 3079 1.000145 GGAGAAAGGAACGCGATGTC 59.000 55.000 15.93 6.91 0.00 3.06
2782 3085 3.802948 AAGGAACGCGATGTCTTCTAT 57.197 42.857 15.93 0.00 0.00 1.98
2787 3090 3.523142 ACGCGATGTCTTCTATACGAG 57.477 47.619 15.93 0.00 0.00 4.18
2793 3096 5.236282 CGATGTCTTCTATACGAGGAGGTA 58.764 45.833 0.00 0.00 30.54 3.08
2794 3097 5.875910 CGATGTCTTCTATACGAGGAGGTAT 59.124 44.000 0.00 0.00 36.99 2.73
2795 3098 6.183360 CGATGTCTTCTATACGAGGAGGTATG 60.183 46.154 0.00 0.00 34.96 2.39
2796 3099 5.938279 TGTCTTCTATACGAGGAGGTATGT 58.062 41.667 0.00 0.00 34.96 2.29
2810 3113 4.174762 GAGGTATGTCTCGTGTTTCCTTC 58.825 47.826 0.00 0.00 0.00 3.46
2814 3117 4.866508 ATGTCTCGTGTTTCCTTCAGTA 57.133 40.909 0.00 0.00 0.00 2.74
2824 3128 2.623418 TCCTTCAGTAGGCCTTGAGA 57.377 50.000 12.58 3.13 44.37 3.27
2827 3131 0.532573 TTCAGTAGGCCTTGAGAGCG 59.467 55.000 12.58 0.00 0.00 5.03
2828 3132 1.520342 CAGTAGGCCTTGAGAGCGC 60.520 63.158 12.58 0.00 0.00 5.92
2847 3151 1.359459 CGTGGCGCTTAAAGGAGGTC 61.359 60.000 7.64 0.00 0.00 3.85
2848 3152 0.321298 GTGGCGCTTAAAGGAGGTCA 60.321 55.000 7.64 0.00 0.00 4.02
2855 3159 0.037975 TTAAAGGAGGTCACGGACGC 60.038 55.000 0.00 0.00 32.65 5.19
2858 3162 4.773117 GGAGGTCACGGACGCGTC 62.773 72.222 30.67 30.67 32.65 5.19
2864 3168 2.803670 CACGGACGCGTCGATTGT 60.804 61.111 30.99 22.73 0.00 2.71
2870 3174 1.461888 GGACGCGTCGATTGTTTTCAG 60.462 52.381 30.99 0.00 0.00 3.02
2883 3187 1.781025 TTTTCAGCCGGTTGACGCTG 61.781 55.000 21.71 11.62 43.35 5.18
2887 3191 2.970324 GCCGGTTGACGCTGAACA 60.970 61.111 1.90 0.00 42.52 3.18
2896 3200 3.410631 TGACGCTGAACATTTCCCTTA 57.589 42.857 0.00 0.00 0.00 2.69
2899 3203 5.492895 TGACGCTGAACATTTCCCTTATTA 58.507 37.500 0.00 0.00 0.00 0.98
2903 3207 8.514330 ACGCTGAACATTTCCCTTATTATTTA 57.486 30.769 0.00 0.00 0.00 1.40
2904 3208 8.621286 ACGCTGAACATTTCCCTTATTATTTAG 58.379 33.333 0.00 0.00 0.00 1.85
2905 3209 8.621286 CGCTGAACATTTCCCTTATTATTTAGT 58.379 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.760131 AGGGATTGTAGCTGCTAATTTTCT 58.240 37.500 11.57 2.82 0.00 2.52
1 2 6.456795 AAGGGATTGTAGCTGCTAATTTTC 57.543 37.500 11.57 6.32 0.00 2.29
3 4 6.437162 TCAAAAGGGATTGTAGCTGCTAATTT 59.563 34.615 11.57 0.00 0.00 1.82
4 5 5.951747 TCAAAAGGGATTGTAGCTGCTAATT 59.048 36.000 11.57 0.00 0.00 1.40
5 6 5.509498 TCAAAAGGGATTGTAGCTGCTAAT 58.491 37.500 11.57 4.00 0.00 1.73
6 7 4.917385 TCAAAAGGGATTGTAGCTGCTAA 58.083 39.130 11.57 0.00 0.00 3.09
7 8 4.568072 TCAAAAGGGATTGTAGCTGCTA 57.432 40.909 5.02 5.02 0.00 3.49
8 9 3.439857 TCAAAAGGGATTGTAGCTGCT 57.560 42.857 7.57 7.57 0.00 4.24
9 10 5.835113 TTATCAAAAGGGATTGTAGCTGC 57.165 39.130 0.00 0.00 0.00 5.25
10 11 7.601856 TGTTTTATCAAAAGGGATTGTAGCTG 58.398 34.615 0.00 0.00 0.00 4.24
11 12 7.669722 TCTGTTTTATCAAAAGGGATTGTAGCT 59.330 33.333 0.00 0.00 0.00 3.32
12 13 7.826690 TCTGTTTTATCAAAAGGGATTGTAGC 58.173 34.615 0.00 0.00 0.00 3.58
13 14 9.846248 CTTCTGTTTTATCAAAAGGGATTGTAG 57.154 33.333 0.00 0.00 0.00 2.74
14 15 9.362151 ACTTCTGTTTTATCAAAAGGGATTGTA 57.638 29.630 0.00 0.00 0.00 2.41
15 16 8.250143 ACTTCTGTTTTATCAAAAGGGATTGT 57.750 30.769 0.00 0.00 0.00 2.71
16 17 8.359642 TGACTTCTGTTTTATCAAAAGGGATTG 58.640 33.333 0.00 0.00 0.00 2.67
17 18 8.477419 TGACTTCTGTTTTATCAAAAGGGATT 57.523 30.769 0.00 0.00 0.00 3.01
18 19 8.655935 ATGACTTCTGTTTTATCAAAAGGGAT 57.344 30.769 0.00 0.00 0.00 3.85
19 20 8.477419 AATGACTTCTGTTTTATCAAAAGGGA 57.523 30.769 0.00 0.00 0.00 4.20
46 47 9.112725 CCTTGACATTGACTACAATCATCAATA 57.887 33.333 14.12 1.85 43.76 1.90
47 48 7.613022 ACCTTGACATTGACTACAATCATCAAT 59.387 33.333 14.12 0.00 43.76 2.57
48 49 6.942005 ACCTTGACATTGACTACAATCATCAA 59.058 34.615 0.23 0.23 43.76 2.57
49 50 6.475504 ACCTTGACATTGACTACAATCATCA 58.524 36.000 0.00 0.00 43.76 3.07
50 51 6.992063 ACCTTGACATTGACTACAATCATC 57.008 37.500 0.00 0.00 43.76 2.92
59 60 8.893727 GCACTTAATATAACCTTGACATTGACT 58.106 33.333 0.00 0.00 0.00 3.41
60 61 8.673711 TGCACTTAATATAACCTTGACATTGAC 58.326 33.333 0.00 0.00 0.00 3.18
61 62 8.800370 TGCACTTAATATAACCTTGACATTGA 57.200 30.769 0.00 0.00 0.00 2.57
64 65 8.988934 CGTATGCACTTAATATAACCTTGACAT 58.011 33.333 0.00 0.00 0.00 3.06
65 66 7.439955 CCGTATGCACTTAATATAACCTTGACA 59.560 37.037 0.00 0.00 0.00 3.58
66 67 7.654520 TCCGTATGCACTTAATATAACCTTGAC 59.345 37.037 0.00 0.00 0.00 3.18
67 68 7.728148 TCCGTATGCACTTAATATAACCTTGA 58.272 34.615 0.00 0.00 0.00 3.02
68 69 7.956420 TCCGTATGCACTTAATATAACCTTG 57.044 36.000 0.00 0.00 0.00 3.61
100 101 9.695526 ACGTAATAACACGCAAATAATATCCTA 57.304 29.630 0.00 0.00 45.77 2.94
101 102 8.492748 CACGTAATAACACGCAAATAATATCCT 58.507 33.333 0.00 0.00 45.77 3.24
102 103 8.489559 TCACGTAATAACACGCAAATAATATCC 58.510 33.333 0.00 0.00 45.77 2.59
106 107 9.858247 CTAATCACGTAATAACACGCAAATAAT 57.142 29.630 0.00 0.00 45.77 1.28
107 108 7.847078 GCTAATCACGTAATAACACGCAAATAA 59.153 33.333 0.00 0.00 45.77 1.40
108 109 7.010275 TGCTAATCACGTAATAACACGCAAATA 59.990 33.333 0.00 0.00 45.77 1.40
109 110 6.183360 TGCTAATCACGTAATAACACGCAAAT 60.183 34.615 0.00 0.00 45.77 2.32
110 111 5.120363 TGCTAATCACGTAATAACACGCAAA 59.880 36.000 0.00 0.00 45.77 3.68
111 112 4.626172 TGCTAATCACGTAATAACACGCAA 59.374 37.500 0.00 0.00 45.77 4.85
112 113 4.174762 TGCTAATCACGTAATAACACGCA 58.825 39.130 0.00 0.00 45.77 5.24
113 114 4.765281 TGCTAATCACGTAATAACACGC 57.235 40.909 0.00 0.00 45.77 5.34
117 118 9.953825 GCAGTATAATGCTAATCACGTAATAAC 57.046 33.333 17.53 0.00 43.07 1.89
118 119 9.146984 GGCAGTATAATGCTAATCACGTAATAA 57.853 33.333 23.03 0.00 45.75 1.40
119 120 8.528643 AGGCAGTATAATGCTAATCACGTAATA 58.471 33.333 23.03 0.00 45.75 0.98
120 121 7.386851 AGGCAGTATAATGCTAATCACGTAAT 58.613 34.615 23.03 0.00 45.75 1.89
121 122 6.755206 AGGCAGTATAATGCTAATCACGTAA 58.245 36.000 23.03 0.00 45.75 3.18
122 123 6.340962 AGGCAGTATAATGCTAATCACGTA 57.659 37.500 23.03 0.00 45.75 3.57
123 124 5.215252 AGGCAGTATAATGCTAATCACGT 57.785 39.130 23.03 0.00 45.75 4.49
124 125 4.627467 GGAGGCAGTATAATGCTAATCACG 59.373 45.833 23.03 0.00 45.75 4.35
125 126 4.627467 CGGAGGCAGTATAATGCTAATCAC 59.373 45.833 23.03 6.90 45.75 3.06
126 127 4.283467 ACGGAGGCAGTATAATGCTAATCA 59.717 41.667 23.03 0.00 45.75 2.57
127 128 4.822026 ACGGAGGCAGTATAATGCTAATC 58.178 43.478 23.03 17.53 45.75 1.75
128 129 4.891992 ACGGAGGCAGTATAATGCTAAT 57.108 40.909 23.03 10.79 45.75 1.73
129 130 4.682778 AACGGAGGCAGTATAATGCTAA 57.317 40.909 23.03 0.00 45.75 3.09
130 131 4.100344 TGAAACGGAGGCAGTATAATGCTA 59.900 41.667 23.03 0.00 45.75 3.49
131 132 3.118408 TGAAACGGAGGCAGTATAATGCT 60.118 43.478 23.03 10.43 45.75 3.79
132 133 3.202906 TGAAACGGAGGCAGTATAATGC 58.797 45.455 16.62 16.62 45.74 3.56
133 134 4.442706 ACTGAAACGGAGGCAGTATAATG 58.557 43.478 0.00 0.00 40.79 1.90
134 135 4.755266 ACTGAAACGGAGGCAGTATAAT 57.245 40.909 0.00 0.00 40.79 1.28
135 136 4.546829 AACTGAAACGGAGGCAGTATAA 57.453 40.909 0.00 0.00 41.65 0.98
136 137 4.546829 AAACTGAAACGGAGGCAGTATA 57.453 40.909 0.00 0.00 41.65 1.47
137 138 3.418684 AAACTGAAACGGAGGCAGTAT 57.581 42.857 0.00 0.00 41.65 2.12
138 139 2.922740 AAACTGAAACGGAGGCAGTA 57.077 45.000 0.00 0.00 41.65 2.74
139 140 2.158871 TGTAAACTGAAACGGAGGCAGT 60.159 45.455 0.00 0.00 44.15 4.40
140 141 2.489971 TGTAAACTGAAACGGAGGCAG 58.510 47.619 0.00 0.00 35.81 4.85
141 142 2.623878 TGTAAACTGAAACGGAGGCA 57.376 45.000 0.00 0.00 0.00 4.75
142 143 2.876550 ACTTGTAAACTGAAACGGAGGC 59.123 45.455 0.00 0.00 0.00 4.70
143 144 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
144 145 4.211374 CAGGACTTGTAAACTGAAACGGAG 59.789 45.833 0.00 0.00 32.86 4.63
145 146 4.124238 CAGGACTTGTAAACTGAAACGGA 58.876 43.478 0.00 0.00 32.86 4.69
146 147 3.875134 ACAGGACTTGTAAACTGAAACGG 59.125 43.478 0.00 0.00 38.56 4.44
147 148 5.981315 TCTACAGGACTTGTAAACTGAAACG 59.019 40.000 0.00 0.00 41.57 3.60
148 149 7.964604 ATCTACAGGACTTGTAAACTGAAAC 57.035 36.000 0.00 0.00 41.57 2.78
151 152 8.910944 GGTATATCTACAGGACTTGTAAACTGA 58.089 37.037 0.00 0.00 41.57 3.41
152 153 8.915036 AGGTATATCTACAGGACTTGTAAACTG 58.085 37.037 0.00 0.00 41.57 3.16
155 156 9.584008 CCTAGGTATATCTACAGGACTTGTAAA 57.416 37.037 0.00 0.00 41.57 2.01
156 157 8.730948 ACCTAGGTATATCTACAGGACTTGTAA 58.269 37.037 14.41 0.00 41.57 2.41
157 158 8.285350 ACCTAGGTATATCTACAGGACTTGTA 57.715 38.462 14.41 0.00 41.29 2.41
158 159 7.164233 ACCTAGGTATATCTACAGGACTTGT 57.836 40.000 14.41 0.00 43.96 3.16
159 160 7.524038 GCAACCTAGGTATATCTACAGGACTTG 60.524 44.444 16.67 4.77 29.63 3.16
160 161 6.494146 GCAACCTAGGTATATCTACAGGACTT 59.506 42.308 16.67 0.00 29.63 3.01
161 162 6.011481 GCAACCTAGGTATATCTACAGGACT 58.989 44.000 16.67 0.00 29.63 3.85
162 163 5.185442 GGCAACCTAGGTATATCTACAGGAC 59.815 48.000 16.67 0.00 29.63 3.85
163 164 5.162914 TGGCAACCTAGGTATATCTACAGGA 60.163 44.000 16.67 0.00 29.63 3.86
164 165 5.084519 TGGCAACCTAGGTATATCTACAGG 58.915 45.833 16.67 0.83 30.73 4.00
165 166 6.665992 TTGGCAACCTAGGTATATCTACAG 57.334 41.667 16.67 0.00 0.00 2.74
166 167 7.626999 AATTGGCAACCTAGGTATATCTACA 57.373 36.000 16.67 5.13 0.00 2.74
167 168 8.919777 AAAATTGGCAACCTAGGTATATCTAC 57.080 34.615 16.67 2.45 0.00 2.59
169 170 9.740710 GATAAAATTGGCAACCTAGGTATATCT 57.259 33.333 16.67 0.00 0.00 1.98
170 171 9.515226 TGATAAAATTGGCAACCTAGGTATATC 57.485 33.333 16.67 11.64 0.00 1.63
171 172 9.297037 GTGATAAAATTGGCAACCTAGGTATAT 57.703 33.333 16.67 0.00 0.00 0.86
172 173 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
173 174 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
174 175 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
175 176 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
176 177 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
177 178 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
178 179 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
179 180 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
180 181 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
228 229 9.696917 CTACGGAGTTTCTACTTTTAAAAGGTA 57.303 33.333 27.23 17.04 37.78 3.08
229 230 8.206867 ACTACGGAGTTTCTACTTTTAAAAGGT 58.793 33.333 27.23 16.86 37.78 3.50
230 231 8.599055 ACTACGGAGTTTCTACTTTTAAAAGG 57.401 34.615 27.23 13.67 37.78 3.11
247 248 7.605410 AAATACACCAACATAAACTACGGAG 57.395 36.000 0.00 0.00 0.00 4.63
248 249 7.982761 AAAATACACCAACATAAACTACGGA 57.017 32.000 0.00 0.00 0.00 4.69
277 278 9.706691 CGACCAACCTAATACAAGTCATATATT 57.293 33.333 0.00 0.00 0.00 1.28
278 279 9.085645 TCGACCAACCTAATACAAGTCATATAT 57.914 33.333 0.00 0.00 0.00 0.86
279 280 8.467963 TCGACCAACCTAATACAAGTCATATA 57.532 34.615 0.00 0.00 0.00 0.86
280 281 7.356089 TCGACCAACCTAATACAAGTCATAT 57.644 36.000 0.00 0.00 0.00 1.78
281 282 6.778834 TCGACCAACCTAATACAAGTCATA 57.221 37.500 0.00 0.00 0.00 2.15
282 283 5.670792 TCGACCAACCTAATACAAGTCAT 57.329 39.130 0.00 0.00 0.00 3.06
283 284 5.471556 TTCGACCAACCTAATACAAGTCA 57.528 39.130 0.00 0.00 0.00 3.41
284 285 6.592607 TCAATTCGACCAACCTAATACAAGTC 59.407 38.462 0.00 0.00 0.00 3.01
285 286 6.370718 GTCAATTCGACCAACCTAATACAAGT 59.629 38.462 0.00 0.00 38.85 3.16
286 287 6.455113 CGTCAATTCGACCAACCTAATACAAG 60.455 42.308 0.00 0.00 42.07 3.16
287 288 5.349270 CGTCAATTCGACCAACCTAATACAA 59.651 40.000 0.00 0.00 42.07 2.41
288 289 4.865925 CGTCAATTCGACCAACCTAATACA 59.134 41.667 0.00 0.00 42.07 2.29
289 290 5.104374 TCGTCAATTCGACCAACCTAATAC 58.896 41.667 0.00 0.00 42.07 1.89
290 291 5.327616 TCGTCAATTCGACCAACCTAATA 57.672 39.130 0.00 0.00 42.07 0.98
291 292 4.196626 TCGTCAATTCGACCAACCTAAT 57.803 40.909 0.00 0.00 42.07 1.73
292 293 3.663995 TCGTCAATTCGACCAACCTAA 57.336 42.857 0.00 0.00 42.07 2.69
301 302 1.108776 CCCCTAGGTCGTCAATTCGA 58.891 55.000 8.29 0.00 37.51 3.71
302 303 1.108776 TCCCCTAGGTCGTCAATTCG 58.891 55.000 8.29 0.00 0.00 3.34
303 304 2.737679 CGTTCCCCTAGGTCGTCAATTC 60.738 54.545 8.29 0.00 0.00 2.17
304 305 1.206371 CGTTCCCCTAGGTCGTCAATT 59.794 52.381 8.29 0.00 0.00 2.32
305 306 0.822164 CGTTCCCCTAGGTCGTCAAT 59.178 55.000 8.29 0.00 0.00 2.57
306 307 1.880819 GCGTTCCCCTAGGTCGTCAA 61.881 60.000 8.29 0.00 35.32 3.18
307 308 2.345760 GCGTTCCCCTAGGTCGTCA 61.346 63.158 8.29 0.00 35.32 4.35
308 309 2.493501 GCGTTCCCCTAGGTCGTC 59.506 66.667 8.29 0.00 35.32 4.20
309 310 3.446570 CGCGTTCCCCTAGGTCGT 61.447 66.667 8.29 0.00 35.32 4.34
310 311 4.867599 GCGCGTTCCCCTAGGTCG 62.868 72.222 8.43 8.12 35.72 4.79
311 312 3.766691 TGCGCGTTCCCCTAGGTC 61.767 66.667 8.43 0.00 0.00 3.85
312 313 4.078516 GTGCGCGTTCCCCTAGGT 62.079 66.667 8.43 0.00 0.00 3.08
321 322 4.973055 TTACTGGGCGTGCGCGTT 62.973 61.111 22.18 3.48 43.06 4.84
322 323 4.973055 TTTACTGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
323 324 4.439472 GTTTACTGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
324 325 3.047877 AGTTTACTGGGCGTGCGC 61.048 61.111 8.17 8.17 41.06 6.09
325 326 1.626654 CTCAGTTTACTGGGCGTGCG 61.627 60.000 9.82 0.00 43.91 5.34
326 327 0.320421 TCTCAGTTTACTGGGCGTGC 60.320 55.000 9.82 0.00 44.04 5.34
327 328 1.272490 TCTCTCAGTTTACTGGGCGTG 59.728 52.381 9.82 1.51 44.04 5.34
328 329 1.546476 CTCTCTCAGTTTACTGGGCGT 59.454 52.381 9.82 0.00 44.04 5.68
329 330 1.819288 TCTCTCTCAGTTTACTGGGCG 59.181 52.381 9.82 1.82 44.04 6.13
330 331 2.167487 CCTCTCTCTCAGTTTACTGGGC 59.833 54.545 9.82 0.00 44.04 5.36
331 332 3.436243 ACCTCTCTCTCAGTTTACTGGG 58.564 50.000 9.82 6.73 45.72 4.45
332 333 5.258051 ACTACCTCTCTCTCAGTTTACTGG 58.742 45.833 9.82 1.82 43.91 4.00
333 334 8.514330 AATACTACCTCTCTCTCAGTTTACTG 57.486 38.462 3.47 3.47 45.08 2.74
334 335 9.181061 GAAATACTACCTCTCTCTCAGTTTACT 57.819 37.037 0.00 0.00 0.00 2.24
335 336 8.958506 TGAAATACTACCTCTCTCTCAGTTTAC 58.041 37.037 0.00 0.00 0.00 2.01
336 337 9.702253 ATGAAATACTACCTCTCTCTCAGTTTA 57.298 33.333 0.00 0.00 0.00 2.01
337 338 8.602472 ATGAAATACTACCTCTCTCTCAGTTT 57.398 34.615 0.00 0.00 0.00 2.66
338 339 9.875708 ATATGAAATACTACCTCTCTCTCAGTT 57.124 33.333 0.00 0.00 0.00 3.16
339 340 9.295825 CATATGAAATACTACCTCTCTCTCAGT 57.704 37.037 0.00 0.00 0.00 3.41
340 341 9.513906 TCATATGAAATACTACCTCTCTCTCAG 57.486 37.037 1.98 0.00 0.00 3.35
379 380 1.792949 CGAGCGCTCAACACTTTTAGT 59.207 47.619 34.69 0.00 0.00 2.24
380 381 2.058798 TCGAGCGCTCAACACTTTTAG 58.941 47.619 34.69 15.72 0.00 1.85
381 382 1.790623 GTCGAGCGCTCAACACTTTTA 59.209 47.619 34.69 7.19 0.00 1.52
382 383 0.582005 GTCGAGCGCTCAACACTTTT 59.418 50.000 34.69 0.00 0.00 2.27
383 384 0.529773 TGTCGAGCGCTCAACACTTT 60.530 50.000 34.69 0.00 0.00 2.66
384 385 0.319900 ATGTCGAGCGCTCAACACTT 60.320 50.000 31.93 15.84 0.00 3.16
385 386 0.319900 AATGTCGAGCGCTCAACACT 60.320 50.000 31.93 20.52 0.00 3.55
386 387 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
387 388 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
388 389 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
389 390 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
390 391 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
391 392 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
392 393 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
393 394 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
394 395 0.368227 GACTGCTTCAATGTCGAGCG 59.632 55.000 0.00 0.00 39.23 5.03
395 396 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
396 397 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
397 398 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
398 399 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
399 400 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
400 401 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
401 402 3.182967 GACGACCTAGACTGCTTCAATG 58.817 50.000 0.00 0.00 0.00 2.82
402 403 2.159366 CGACGACCTAGACTGCTTCAAT 60.159 50.000 0.00 0.00 0.00 2.57
403 404 1.199327 CGACGACCTAGACTGCTTCAA 59.801 52.381 0.00 0.00 0.00 2.69
404 405 0.803117 CGACGACCTAGACTGCTTCA 59.197 55.000 0.00 0.00 0.00 3.02
405 406 0.099082 CCGACGACCTAGACTGCTTC 59.901 60.000 0.00 0.00 0.00 3.86
406 407 0.322277 TCCGACGACCTAGACTGCTT 60.322 55.000 0.00 0.00 0.00 3.91
407 408 0.107116 ATCCGACGACCTAGACTGCT 60.107 55.000 0.00 0.00 0.00 4.24
408 409 0.739561 AATCCGACGACCTAGACTGC 59.260 55.000 0.00 0.00 0.00 4.40
409 410 2.014857 TCAATCCGACGACCTAGACTG 58.985 52.381 0.00 0.00 0.00 3.51
410 411 2.015587 GTCAATCCGACGACCTAGACT 58.984 52.381 0.00 0.00 34.19 3.24
411 412 2.471862 GTCAATCCGACGACCTAGAC 57.528 55.000 0.00 0.00 34.19 2.59
420 421 4.790766 GCCATCAAATCATGTCAATCCGAC 60.791 45.833 0.00 0.00 45.61 4.79
421 422 3.316029 GCCATCAAATCATGTCAATCCGA 59.684 43.478 0.00 0.00 0.00 4.55
422 423 3.551454 GGCCATCAAATCATGTCAATCCG 60.551 47.826 0.00 0.00 0.00 4.18
423 424 3.551454 CGGCCATCAAATCATGTCAATCC 60.551 47.826 2.24 0.00 0.00 3.01
424 425 3.316029 TCGGCCATCAAATCATGTCAATC 59.684 43.478 2.24 0.00 0.00 2.67
425 426 3.289836 TCGGCCATCAAATCATGTCAAT 58.710 40.909 2.24 0.00 0.00 2.57
426 427 2.684374 CTCGGCCATCAAATCATGTCAA 59.316 45.455 2.24 0.00 0.00 3.18
427 428 2.093021 TCTCGGCCATCAAATCATGTCA 60.093 45.455 2.24 0.00 0.00 3.58
428 429 2.564771 TCTCGGCCATCAAATCATGTC 58.435 47.619 2.24 0.00 0.00 3.06
429 430 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
430 431 5.694231 TTAATCTCGGCCATCAAATCATG 57.306 39.130 2.24 0.00 0.00 3.07
431 432 6.294899 CCAATTAATCTCGGCCATCAAATCAT 60.295 38.462 2.24 0.00 0.00 2.45
432 433 5.009911 CCAATTAATCTCGGCCATCAAATCA 59.990 40.000 2.24 0.00 0.00 2.57
433 434 5.241506 TCCAATTAATCTCGGCCATCAAATC 59.758 40.000 2.24 0.00 0.00 2.17
434 435 5.139727 TCCAATTAATCTCGGCCATCAAAT 58.860 37.500 2.24 0.00 0.00 2.32
435 436 4.531854 TCCAATTAATCTCGGCCATCAAA 58.468 39.130 2.24 0.00 0.00 2.69
436 437 4.163441 TCCAATTAATCTCGGCCATCAA 57.837 40.909 2.24 0.00 0.00 2.57
437 438 3.855255 TCCAATTAATCTCGGCCATCA 57.145 42.857 2.24 0.00 0.00 3.07
438 439 4.326826 TGATCCAATTAATCTCGGCCATC 58.673 43.478 2.24 0.00 0.00 3.51
439 440 4.330250 CTGATCCAATTAATCTCGGCCAT 58.670 43.478 2.24 0.00 0.00 4.40
440 441 3.743521 CTGATCCAATTAATCTCGGCCA 58.256 45.455 2.24 0.00 0.00 5.36
441 442 2.485814 GCTGATCCAATTAATCTCGGCC 59.514 50.000 0.00 0.00 0.00 6.13
442 443 2.485814 GGCTGATCCAATTAATCTCGGC 59.514 50.000 10.40 10.40 34.01 5.54
443 444 3.077359 GGGCTGATCCAATTAATCTCGG 58.923 50.000 0.00 0.00 36.21 4.63
444 445 3.077359 GGGGCTGATCCAATTAATCTCG 58.923 50.000 0.00 0.00 36.21 4.04
445 446 4.379302 AGGGGCTGATCCAATTAATCTC 57.621 45.455 0.00 0.00 36.21 2.75
446 447 4.821532 AAGGGGCTGATCCAATTAATCT 57.178 40.909 0.00 0.00 36.21 2.40
447 448 4.039609 CCAAAGGGGCTGATCCAATTAATC 59.960 45.833 0.00 0.00 36.21 1.75
448 449 3.969312 CCAAAGGGGCTGATCCAATTAAT 59.031 43.478 0.00 0.00 36.21 1.40
449 450 3.373830 CCAAAGGGGCTGATCCAATTAA 58.626 45.455 0.00 0.00 36.21 1.40
450 451 3.030873 CCAAAGGGGCTGATCCAATTA 57.969 47.619 0.00 0.00 36.21 1.40
451 452 1.870064 CCAAAGGGGCTGATCCAATT 58.130 50.000 0.00 0.00 36.21 2.32
452 453 3.621419 CCAAAGGGGCTGATCCAAT 57.379 52.632 0.00 0.00 36.21 3.16
464 465 9.338622 CTATACCACTATAAAAAGACCCAAAGG 57.661 37.037 0.00 0.00 40.04 3.11
466 467 9.895138 GTCTATACCACTATAAAAAGACCCAAA 57.105 33.333 0.00 0.00 0.00 3.28
467 468 8.199449 CGTCTATACCACTATAAAAAGACCCAA 58.801 37.037 0.00 0.00 0.00 4.12
468 469 7.685155 GCGTCTATACCACTATAAAAAGACCCA 60.685 40.741 0.00 0.00 0.00 4.51
469 470 6.644181 GCGTCTATACCACTATAAAAAGACCC 59.356 42.308 0.00 0.00 0.00 4.46
470 471 7.205297 TGCGTCTATACCACTATAAAAAGACC 58.795 38.462 0.00 0.00 0.00 3.85
471 472 8.813643 ATGCGTCTATACCACTATAAAAAGAC 57.186 34.615 0.00 0.00 0.00 3.01
472 473 9.826574 AAATGCGTCTATACCACTATAAAAAGA 57.173 29.630 0.00 0.00 0.00 2.52
474 475 9.826574 AGAAATGCGTCTATACCACTATAAAAA 57.173 29.630 0.00 0.00 0.00 1.94
475 476 9.826574 AAGAAATGCGTCTATACCACTATAAAA 57.173 29.630 0.00 0.00 0.00 1.52
477 478 9.903682 GTAAGAAATGCGTCTATACCACTATAA 57.096 33.333 0.00 0.00 0.00 0.98
478 479 9.070179 TGTAAGAAATGCGTCTATACCACTATA 57.930 33.333 0.00 0.00 0.00 1.31
479 480 7.948357 TGTAAGAAATGCGTCTATACCACTAT 58.052 34.615 0.00 0.00 0.00 2.12
480 481 7.337480 TGTAAGAAATGCGTCTATACCACTA 57.663 36.000 0.00 0.00 0.00 2.74
481 482 6.216801 TGTAAGAAATGCGTCTATACCACT 57.783 37.500 0.00 0.00 0.00 4.00
482 483 6.311935 TGTTGTAAGAAATGCGTCTATACCAC 59.688 38.462 0.00 0.00 0.00 4.16
483 484 6.399743 TGTTGTAAGAAATGCGTCTATACCA 58.600 36.000 0.00 0.00 0.00 3.25
484 485 6.897259 TGTTGTAAGAAATGCGTCTATACC 57.103 37.500 0.00 0.00 0.00 2.73
485 486 6.900299 GCTTGTTGTAAGAAATGCGTCTATAC 59.100 38.462 0.00 0.00 0.00 1.47
486 487 6.816640 AGCTTGTTGTAAGAAATGCGTCTATA 59.183 34.615 0.00 0.00 0.00 1.31
487 488 5.643777 AGCTTGTTGTAAGAAATGCGTCTAT 59.356 36.000 0.00 0.00 0.00 1.98
488 489 4.994852 AGCTTGTTGTAAGAAATGCGTCTA 59.005 37.500 0.00 0.00 0.00 2.59
489 490 3.815401 AGCTTGTTGTAAGAAATGCGTCT 59.185 39.130 0.00 0.00 0.00 4.18
490 491 4.147219 AGCTTGTTGTAAGAAATGCGTC 57.853 40.909 0.00 0.00 0.00 5.19
491 492 5.468746 TCTTAGCTTGTTGTAAGAAATGCGT 59.531 36.000 0.00 0.00 33.31 5.24
492 493 5.927030 TCTTAGCTTGTTGTAAGAAATGCG 58.073 37.500 0.00 0.00 33.31 4.73
493 494 6.903419 ACTCTTAGCTTGTTGTAAGAAATGC 58.097 36.000 0.00 0.00 35.38 3.56
494 495 8.988934 TGTACTCTTAGCTTGTTGTAAGAAATG 58.011 33.333 0.00 0.00 35.38 2.32
495 496 8.989980 GTGTACTCTTAGCTTGTTGTAAGAAAT 58.010 33.333 0.00 0.00 35.38 2.17
496 497 7.982919 TGTGTACTCTTAGCTTGTTGTAAGAAA 59.017 33.333 0.00 0.00 35.38 2.52
497 498 7.494211 TGTGTACTCTTAGCTTGTTGTAAGAA 58.506 34.615 0.00 0.00 35.38 2.52
498 499 7.046292 TGTGTACTCTTAGCTTGTTGTAAGA 57.954 36.000 0.00 0.00 34.73 2.10
499 500 7.891183 ATGTGTACTCTTAGCTTGTTGTAAG 57.109 36.000 0.00 0.00 0.00 2.34
500 501 8.671384 AAATGTGTACTCTTAGCTTGTTGTAA 57.329 30.769 0.00 0.00 0.00 2.41
501 502 9.767228 TTAAATGTGTACTCTTAGCTTGTTGTA 57.233 29.630 0.00 0.00 0.00 2.41
502 503 8.671384 TTAAATGTGTACTCTTAGCTTGTTGT 57.329 30.769 0.00 0.00 0.00 3.32
503 504 9.546909 CATTAAATGTGTACTCTTAGCTTGTTG 57.453 33.333 0.00 0.00 0.00 3.33
504 505 8.730680 CCATTAAATGTGTACTCTTAGCTTGTT 58.269 33.333 0.00 0.00 0.00 2.83
505 506 7.883311 ACCATTAAATGTGTACTCTTAGCTTGT 59.117 33.333 0.00 0.00 0.00 3.16
506 507 8.177663 CACCATTAAATGTGTACTCTTAGCTTG 58.822 37.037 0.00 0.00 0.00 4.01
507 508 7.883311 ACACCATTAAATGTGTACTCTTAGCTT 59.117 33.333 10.63 0.00 0.00 3.74
508 509 7.394816 ACACCATTAAATGTGTACTCTTAGCT 58.605 34.615 10.63 0.00 0.00 3.32
509 510 7.611213 ACACCATTAAATGTGTACTCTTAGC 57.389 36.000 10.63 0.00 0.00 3.09
512 513 9.744468 GAAAAACACCATTAAATGTGTACTCTT 57.256 29.630 12.20 2.99 0.00 2.85
513 514 9.131791 AGAAAAACACCATTAAATGTGTACTCT 57.868 29.630 12.20 11.13 0.00 3.24
514 515 9.744468 AAGAAAAACACCATTAAATGTGTACTC 57.256 29.630 12.20 9.62 0.00 2.59
551 552 5.003804 AGTGCCAAAACATCGAAATAGTCT 58.996 37.500 0.00 0.00 0.00 3.24
554 555 4.155826 TCCAGTGCCAAAACATCGAAATAG 59.844 41.667 0.00 0.00 0.00 1.73
559 560 2.198827 ATCCAGTGCCAAAACATCGA 57.801 45.000 0.00 0.00 0.00 3.59
560 561 2.489329 AGAATCCAGTGCCAAAACATCG 59.511 45.455 0.00 0.00 0.00 3.84
561 562 4.525912 AAGAATCCAGTGCCAAAACATC 57.474 40.909 0.00 0.00 0.00 3.06
562 563 4.961438 AAAGAATCCAGTGCCAAAACAT 57.039 36.364 0.00 0.00 0.00 2.71
564 565 5.842907 AGTAAAAGAATCCAGTGCCAAAAC 58.157 37.500 0.00 0.00 0.00 2.43
600 786 0.251341 GGAAACCCAGACACCATGCT 60.251 55.000 0.00 0.00 0.00 3.79
637 828 4.093952 CAACGAGGGCAAGCGCTG 62.094 66.667 12.58 6.58 39.38 5.18
638 829 4.626081 ACAACGAGGGCAAGCGCT 62.626 61.111 2.64 2.64 42.05 5.92
639 830 4.389576 CACAACGAGGGCAAGCGC 62.390 66.667 0.00 0.00 37.44 5.92
646 837 2.100631 CCGCTAAGCACAACGAGGG 61.101 63.158 0.00 0.00 0.00 4.30
648 839 2.740714 GGCCGCTAAGCACAACGAG 61.741 63.158 0.00 0.00 0.00 4.18
649 840 2.740826 GGCCGCTAAGCACAACGA 60.741 61.111 0.00 0.00 0.00 3.85
651 842 2.690778 CCTGGCCGCTAAGCACAAC 61.691 63.158 0.00 0.00 0.00 3.32
652 843 1.832719 TACCTGGCCGCTAAGCACAA 61.833 55.000 0.00 0.00 0.00 3.33
653 844 1.622607 ATACCTGGCCGCTAAGCACA 61.623 55.000 0.00 0.00 0.00 4.57
654 845 1.146263 ATACCTGGCCGCTAAGCAC 59.854 57.895 0.00 0.00 0.00 4.40
655 846 1.146041 CATACCTGGCCGCTAAGCA 59.854 57.895 0.00 0.00 0.00 3.91
665 856 0.399091 TCTCTCCCTGCCATACCTGG 60.399 60.000 0.00 0.00 46.17 4.45
666 857 1.500474 TTCTCTCCCTGCCATACCTG 58.500 55.000 0.00 0.00 0.00 4.00
667 858 2.053244 CATTCTCTCCCTGCCATACCT 58.947 52.381 0.00 0.00 0.00 3.08
680 871 2.238530 CCTCCATGGCCCATTCTCT 58.761 57.895 6.96 0.00 0.00 3.10
737 928 2.821366 CATCGCAAGCTCCGCCTT 60.821 61.111 2.71 0.00 37.18 4.35
738 929 4.087892 ACATCGCAAGCTCCGCCT 62.088 61.111 2.71 0.00 37.18 5.52
807 1004 1.179174 TCGTCCACAGACTCTGGTGG 61.179 60.000 10.86 13.97 41.16 4.61
808 1005 0.673985 TTCGTCCACAGACTCTGGTG 59.326 55.000 10.86 6.38 41.16 4.17
809 1006 1.273606 CATTCGTCCACAGACTCTGGT 59.726 52.381 10.86 0.00 41.16 4.00
810 1007 1.404717 CCATTCGTCCACAGACTCTGG 60.405 57.143 10.86 0.00 41.16 3.86
811 1008 1.546029 TCCATTCGTCCACAGACTCTG 59.454 52.381 4.36 4.36 41.16 3.35
812 1009 1.924731 TCCATTCGTCCACAGACTCT 58.075 50.000 0.00 0.00 41.16 3.24
816 1013 3.104512 ACCTTATCCATTCGTCCACAGA 58.895 45.455 0.00 0.00 0.00 3.41
871 1072 4.426112 GGCGCTCCCTTTTGCTGC 62.426 66.667 7.64 0.00 0.00 5.25
930 1133 4.547367 GAGGTGGGAATCGGCGGG 62.547 72.222 7.21 0.00 0.00 6.13
992 1195 1.903877 CTGAGAGGCCATCGGGTTGT 61.904 60.000 5.01 0.00 36.17 3.32
1170 1384 2.119832 ACCAGGGCCTCGTAGTGT 59.880 61.111 0.95 0.00 0.00 3.55
1371 1591 0.902048 TGTGCTCCTCCTCAGTCCAG 60.902 60.000 0.00 0.00 0.00 3.86
1377 1597 0.965866 CGTACCTGTGCTCCTCCTCA 60.966 60.000 0.00 0.00 0.00 3.86
1427 1653 2.305927 TCCTCTGTTTTCCATGGGAGAC 59.694 50.000 13.02 9.66 31.21 3.36
1460 1689 1.024271 CGCACCCCGATCATCAAAAT 58.976 50.000 0.00 0.00 40.02 1.82
1918 2155 1.741401 CGAACCGGAGCAAGCATGA 60.741 57.895 9.46 0.00 0.00 3.07
2036 2282 4.790861 GAGGAACGGACGGCGACC 62.791 72.222 16.62 17.63 0.00 4.79
2061 2307 1.639298 GCGTCATCCCTGCACTCAAC 61.639 60.000 0.00 0.00 0.00 3.18
2110 2358 9.376075 CATATATATAAGCTAGCACTTGCAACT 57.624 33.333 18.83 0.00 45.16 3.16
2133 2387 1.970640 CCCGGGTCTGTGATCATCATA 59.029 52.381 14.18 0.00 0.00 2.15
2134 2388 0.761187 CCCGGGTCTGTGATCATCAT 59.239 55.000 14.18 0.00 0.00 2.45
2135 2389 0.325203 TCCCGGGTCTGTGATCATCA 60.325 55.000 22.86 0.00 0.00 3.07
2136 2390 0.830648 TTCCCGGGTCTGTGATCATC 59.169 55.000 22.86 0.00 0.00 2.92
2137 2391 1.210478 CTTTCCCGGGTCTGTGATCAT 59.790 52.381 22.86 0.00 0.00 2.45
2277 2532 5.793457 GCAGGTGTAATTTATTCACGTCAAC 59.207 40.000 0.00 0.00 33.51 3.18
2323 2586 3.120477 TGTTACAGTGAAATTAAGGCGCG 60.120 43.478 0.00 0.00 0.00 6.86
2326 2589 5.371115 TGCTGTTACAGTGAAATTAAGGC 57.629 39.130 14.23 0.00 33.43 4.35
2404 2667 7.377398 CCAAATTAATGGTTCAACATGTCTCA 58.623 34.615 0.00 0.00 35.65 3.27
2413 2676 3.262915 CAGGCCCCAAATTAATGGTTCAA 59.737 43.478 0.00 0.00 38.91 2.69
2414 2677 2.836981 CAGGCCCCAAATTAATGGTTCA 59.163 45.455 0.00 0.00 38.91 3.18
2415 2678 2.419990 GCAGGCCCCAAATTAATGGTTC 60.420 50.000 0.00 0.00 38.91 3.62
2416 2679 1.559219 GCAGGCCCCAAATTAATGGTT 59.441 47.619 0.00 0.00 38.91 3.67
2417 2680 1.203237 GCAGGCCCCAAATTAATGGT 58.797 50.000 0.00 0.00 38.91 3.55
2418 2681 1.499368 AGCAGGCCCCAAATTAATGG 58.501 50.000 0.00 0.00 40.35 3.16
2419 2682 2.034558 CGTAGCAGGCCCCAAATTAATG 59.965 50.000 0.00 0.00 0.00 1.90
2420 2683 2.306847 CGTAGCAGGCCCCAAATTAAT 58.693 47.619 0.00 0.00 0.00 1.40
2421 2684 1.757682 CGTAGCAGGCCCCAAATTAA 58.242 50.000 0.00 0.00 0.00 1.40
2422 2685 3.487576 CGTAGCAGGCCCCAAATTA 57.512 52.632 0.00 0.00 0.00 1.40
2423 2686 4.337013 CGTAGCAGGCCCCAAATT 57.663 55.556 0.00 0.00 0.00 1.82
2445 2708 3.253188 TCTTTTGAAAAGATCTGCCCACG 59.747 43.478 15.81 0.00 0.00 4.94
2447 2710 5.649782 GATCTTTTGAAAAGATCTGCCCA 57.350 39.130 35.72 12.06 45.62 5.36
2448 2711 4.439289 CGGATCTTTTGAAAAGATCTGCCC 60.439 45.833 38.38 28.89 46.78 5.36
2456 2719 4.201724 CGAGGCTACGGATCTTTTGAAAAG 60.202 45.833 11.30 11.30 0.00 2.27
2461 2724 0.931005 GCGAGGCTACGGATCTTTTG 59.069 55.000 8.11 0.00 0.00 2.44
2465 2728 2.203167 TCGCGAGGCTACGGATCT 60.203 61.111 3.71 0.00 0.00 2.75
2478 2741 2.257894 GATTAGATCTGATGGCTCGCG 58.742 52.381 4.45 0.00 0.00 5.87
2482 2745 6.229733 GCTAGTTTGATTAGATCTGATGGCT 58.770 40.000 4.45 0.85 0.00 4.75
2483 2746 5.119898 CGCTAGTTTGATTAGATCTGATGGC 59.880 44.000 4.45 0.00 0.00 4.40
2495 2758 1.732259 CGTTCAGCCGCTAGTTTGATT 59.268 47.619 0.00 0.00 0.00 2.57
2499 2762 0.317479 AGACGTTCAGCCGCTAGTTT 59.683 50.000 0.00 0.00 0.00 2.66
2501 2764 0.109226 GAAGACGTTCAGCCGCTAGT 60.109 55.000 0.00 0.00 32.36 2.57
2502 2765 0.171455 AGAAGACGTTCAGCCGCTAG 59.829 55.000 0.00 0.00 34.82 3.42
2507 2770 0.793250 GCAGAAGAAGACGTTCAGCC 59.207 55.000 0.00 0.00 34.82 4.85
2510 2773 2.287915 GCAAAGCAGAAGAAGACGTTCA 59.712 45.455 0.00 0.00 34.82 3.18
2512 2775 2.288666 TGCAAAGCAGAAGAAGACGTT 58.711 42.857 0.00 0.00 33.32 3.99
2525 2788 5.013861 CAACATGATCTTTGTTGCAAAGC 57.986 39.130 21.20 5.00 45.10 3.51
2556 2819 8.189460 ACTTTATGTTAAAACCTACGTTGCAAA 58.811 29.630 0.00 0.00 30.72 3.68
2571 2834 8.415950 AATCCCATGACACAACTTTATGTTAA 57.584 30.769 0.00 0.00 37.07 2.01
2572 2835 8.415950 AAATCCCATGACACAACTTTATGTTA 57.584 30.769 0.00 0.00 37.07 2.41
2573 2836 6.916360 AATCCCATGACACAACTTTATGTT 57.084 33.333 0.00 0.00 39.92 2.71
2574 2837 6.916360 AAATCCCATGACACAACTTTATGT 57.084 33.333 0.00 0.00 0.00 2.29
2613 2876 4.375305 GCAAACAAATCTCGCAACACAATC 60.375 41.667 0.00 0.00 0.00 2.67
2614 2877 3.490526 GCAAACAAATCTCGCAACACAAT 59.509 39.130 0.00 0.00 0.00 2.71
2726 3029 9.447040 CTCATCTATATGTTTTCTGCAACATTG 57.553 33.333 7.04 0.39 43.54 2.82
2758 3061 1.997669 AGACATCGCGTTCCTTTCTC 58.002 50.000 5.77 0.00 0.00 2.87
2762 3065 3.802948 ATAGAAGACATCGCGTTCCTT 57.197 42.857 5.77 5.76 0.00 3.36
2769 3072 3.120130 CCTCCTCGTATAGAAGACATCGC 60.120 52.174 0.00 0.00 0.00 4.58
2770 3073 4.066490 ACCTCCTCGTATAGAAGACATCG 58.934 47.826 0.00 0.00 0.00 3.84
2776 3079 5.349270 CGAGACATACCTCCTCGTATAGAAG 59.651 48.000 0.00 0.00 43.20 2.85
2787 3090 2.496470 AGGAAACACGAGACATACCTCC 59.504 50.000 0.00 0.00 0.00 4.30
2793 3096 3.753294 ACTGAAGGAAACACGAGACAT 57.247 42.857 0.00 0.00 0.00 3.06
2794 3097 4.238761 CTACTGAAGGAAACACGAGACA 57.761 45.455 0.00 0.00 0.00 3.41
2810 3113 1.520342 GCGCTCTCAAGGCCTACTG 60.520 63.158 5.16 0.47 0.00 2.74
2814 3117 4.749310 CACGCGCTCTCAAGGCCT 62.749 66.667 5.73 0.00 0.00 5.19
2828 3132 1.359459 GACCTCCTTTAAGCGCCACG 61.359 60.000 2.29 0.00 0.00 4.94
2832 3136 1.359459 CCGTGACCTCCTTTAAGCGC 61.359 60.000 0.00 0.00 0.00 5.92
2833 3137 0.245539 TCCGTGACCTCCTTTAAGCG 59.754 55.000 0.00 0.00 0.00 4.68
2855 3159 0.179225 CCGGCTGAAAACAATCGACG 60.179 55.000 0.00 0.00 0.00 5.12
2858 3162 1.265635 TCAACCGGCTGAAAACAATCG 59.734 47.619 4.72 0.00 0.00 3.34
2864 3168 1.525077 AGCGTCAACCGGCTGAAAA 60.525 52.632 9.60 0.00 38.27 2.29
2870 3174 1.852067 AATGTTCAGCGTCAACCGGC 61.852 55.000 0.00 0.00 36.94 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.