Multiple sequence alignment - TraesCS7D01G032600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G032600 chr7D 100.000 2764 0 0 1 2764 16906073 16903310 0.000000e+00 5105
1 TraesCS7D01G032600 chr4A 88.482 1884 164 29 256 2120 717651236 717649387 0.000000e+00 2228
2 TraesCS7D01G032600 chr4A 83.951 486 44 17 2273 2748 717649198 717648737 4.230000e-118 435
3 TraesCS7D01G032600 chr7A 94.895 1097 53 3 419 1515 16129252 16128159 0.000000e+00 1712
4 TraesCS7D01G032600 chr7A 93.269 208 14 0 1 208 16155551 16155344 9.620000e-80 307
5 TraesCS7D01G032600 chr2A 80.319 376 71 3 436 808 749566783 749566408 5.830000e-72 281
6 TraesCS7D01G032600 chr5A 81.818 308 56 0 935 1242 622363441 622363748 2.730000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G032600 chr7D 16903310 16906073 2763 True 5105.0 5105 100.0000 1 2764 1 chr7D.!!$R1 2763
1 TraesCS7D01G032600 chr4A 717648737 717651236 2499 True 1331.5 2228 86.2165 256 2748 2 chr4A.!!$R1 2492
2 TraesCS7D01G032600 chr7A 16128159 16129252 1093 True 1712.0 1712 94.8950 419 1515 1 chr7A.!!$R1 1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.034574 TATGCCGTGGATGCAAACCT 60.035 50.0 13.16 0.0 42.92 3.5 F
54 55 0.038166 GTGGATGCAAACCTCAGGGA 59.962 55.0 13.16 0.0 36.25 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1683 0.030235 TGATGTCGATCGCCGTTAGG 59.970 55.0 11.09 0.0 39.75 2.69 R
1896 1908 0.106708 TGAGCAGGTTGTCCAGTGTC 59.893 55.0 0.00 0.0 35.89 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.333417 GCTTGGCAGCAAGGATCT 57.667 55.556 5.08 0.00 46.49 2.75
25 26 2.576298 GCTTGGCAGCAAGGATCTT 58.424 52.632 5.08 0.00 46.49 2.40
26 27 0.172803 GCTTGGCAGCAAGGATCTTG 59.827 55.000 5.08 3.50 46.49 3.02
27 28 1.542492 CTTGGCAGCAAGGATCTTGT 58.458 50.000 9.07 0.00 0.00 3.16
28 29 1.471684 CTTGGCAGCAAGGATCTTGTC 59.528 52.381 9.07 2.77 0.00 3.18
29 30 0.694771 TGGCAGCAAGGATCTTGTCT 59.305 50.000 9.07 4.70 0.00 3.41
30 31 1.908619 TGGCAGCAAGGATCTTGTCTA 59.091 47.619 9.07 0.00 0.00 2.59
31 32 2.507058 TGGCAGCAAGGATCTTGTCTAT 59.493 45.455 9.07 0.00 0.00 1.98
32 33 2.877168 GGCAGCAAGGATCTTGTCTATG 59.123 50.000 9.07 5.25 0.00 2.23
33 34 2.290093 GCAGCAAGGATCTTGTCTATGC 59.710 50.000 9.07 10.04 38.10 3.14
34 35 2.877168 CAGCAAGGATCTTGTCTATGCC 59.123 50.000 9.07 0.00 38.38 4.40
35 36 1.869767 GCAAGGATCTTGTCTATGCCG 59.130 52.381 9.07 0.00 34.48 5.69
36 37 2.743183 GCAAGGATCTTGTCTATGCCGT 60.743 50.000 9.07 0.00 34.48 5.68
37 38 2.868583 CAAGGATCTTGTCTATGCCGTG 59.131 50.000 0.00 0.00 0.00 4.94
38 39 1.414181 AGGATCTTGTCTATGCCGTGG 59.586 52.381 0.00 0.00 0.00 4.94
39 40 1.412710 GGATCTTGTCTATGCCGTGGA 59.587 52.381 0.00 0.00 0.00 4.02
40 41 2.037772 GGATCTTGTCTATGCCGTGGAT 59.962 50.000 0.00 0.00 0.00 3.41
41 42 2.602257 TCTTGTCTATGCCGTGGATG 57.398 50.000 0.00 0.00 0.00 3.51
42 43 0.940126 CTTGTCTATGCCGTGGATGC 59.060 55.000 0.00 0.00 0.00 3.91
43 44 0.251634 TTGTCTATGCCGTGGATGCA 59.748 50.000 0.00 0.00 43.97 3.96
44 45 0.251634 TGTCTATGCCGTGGATGCAA 59.748 50.000 0.00 0.00 42.92 4.08
45 46 1.339535 TGTCTATGCCGTGGATGCAAA 60.340 47.619 0.00 0.00 42.92 3.68
46 47 1.064060 GTCTATGCCGTGGATGCAAAC 59.936 52.381 0.00 0.00 42.92 2.93
47 48 0.381801 CTATGCCGTGGATGCAAACC 59.618 55.000 6.38 6.38 42.92 3.27
48 49 0.034574 TATGCCGTGGATGCAAACCT 60.035 50.000 13.16 0.00 42.92 3.50
49 50 1.315257 ATGCCGTGGATGCAAACCTC 61.315 55.000 13.16 9.29 42.92 3.85
50 51 1.971167 GCCGTGGATGCAAACCTCA 60.971 57.895 13.16 0.00 0.00 3.86
51 52 1.926511 GCCGTGGATGCAAACCTCAG 61.927 60.000 13.16 5.00 0.00 3.35
52 53 1.308069 CCGTGGATGCAAACCTCAGG 61.308 60.000 13.16 0.00 0.00 3.86
53 54 1.308069 CGTGGATGCAAACCTCAGGG 61.308 60.000 13.16 0.00 38.88 4.45
54 55 0.038166 GTGGATGCAAACCTCAGGGA 59.962 55.000 13.16 0.00 36.25 4.20
55 56 0.329261 TGGATGCAAACCTCAGGGAG 59.671 55.000 13.16 0.00 36.25 4.30
56 57 0.620556 GGATGCAAACCTCAGGGAGA 59.379 55.000 0.00 0.00 36.25 3.71
57 58 1.213926 GGATGCAAACCTCAGGGAGAT 59.786 52.381 0.00 0.00 36.25 2.75
58 59 2.295885 GATGCAAACCTCAGGGAGATG 58.704 52.381 0.00 0.00 36.25 2.90
59 60 1.067295 TGCAAACCTCAGGGAGATGT 58.933 50.000 0.00 0.00 36.25 3.06
60 61 1.425066 TGCAAACCTCAGGGAGATGTT 59.575 47.619 0.00 0.00 36.77 2.71
61 62 2.642311 TGCAAACCTCAGGGAGATGTTA 59.358 45.455 0.00 0.00 34.53 2.41
62 63 3.010420 GCAAACCTCAGGGAGATGTTAC 58.990 50.000 0.00 0.00 34.53 2.50
63 64 3.307762 GCAAACCTCAGGGAGATGTTACT 60.308 47.826 0.00 0.00 34.53 2.24
64 65 4.508662 CAAACCTCAGGGAGATGTTACTC 58.491 47.826 0.00 0.00 34.53 2.59
72 73 1.927895 GAGATGTTACTCCAGCGGTG 58.072 55.000 7.86 7.86 0.00 4.94
73 74 1.204941 GAGATGTTACTCCAGCGGTGT 59.795 52.381 14.40 0.00 33.75 4.16
74 75 2.426024 GAGATGTTACTCCAGCGGTGTA 59.574 50.000 14.40 0.00 31.55 2.90
75 76 3.031736 AGATGTTACTCCAGCGGTGTAT 58.968 45.455 14.40 0.73 32.74 2.29
76 77 3.451178 AGATGTTACTCCAGCGGTGTATT 59.549 43.478 14.40 0.00 32.74 1.89
77 78 3.688694 TGTTACTCCAGCGGTGTATTT 57.311 42.857 14.40 0.00 32.74 1.40
78 79 3.592059 TGTTACTCCAGCGGTGTATTTC 58.408 45.455 14.40 0.42 32.74 2.17
79 80 2.934553 GTTACTCCAGCGGTGTATTTCC 59.065 50.000 14.40 0.00 32.74 3.13
80 81 0.252197 ACTCCAGCGGTGTATTTCCC 59.748 55.000 14.40 0.00 0.00 3.97
81 82 0.810031 CTCCAGCGGTGTATTTCCCG 60.810 60.000 14.40 0.00 46.90 5.14
82 83 1.817941 CCAGCGGTGTATTTCCCGG 60.818 63.158 14.40 0.00 44.36 5.73
83 84 2.124860 AGCGGTGTATTTCCCGGC 60.125 61.111 0.00 0.00 44.36 6.13
84 85 2.124860 GCGGTGTATTTCCCGGCT 60.125 61.111 0.00 0.00 44.36 5.52
85 86 2.178235 GCGGTGTATTTCCCGGCTC 61.178 63.158 0.00 0.00 44.36 4.70
86 87 1.219664 CGGTGTATTTCCCGGCTCA 59.780 57.895 0.00 0.00 40.54 4.26
87 88 0.391927 CGGTGTATTTCCCGGCTCAA 60.392 55.000 0.00 0.00 40.54 3.02
88 89 1.745827 CGGTGTATTTCCCGGCTCAAT 60.746 52.381 0.00 0.00 40.54 2.57
89 90 1.947456 GGTGTATTTCCCGGCTCAATC 59.053 52.381 0.00 0.00 0.00 2.67
90 91 2.639065 GTGTATTTCCCGGCTCAATCA 58.361 47.619 0.00 0.00 0.00 2.57
91 92 3.214328 GTGTATTTCCCGGCTCAATCAT 58.786 45.455 0.00 0.00 0.00 2.45
92 93 3.003689 GTGTATTTCCCGGCTCAATCATG 59.996 47.826 0.00 0.00 0.00 3.07
93 94 2.442236 ATTTCCCGGCTCAATCATGT 57.558 45.000 0.00 0.00 0.00 3.21
94 95 1.750193 TTTCCCGGCTCAATCATGTC 58.250 50.000 0.00 0.00 0.00 3.06
95 96 0.461870 TTCCCGGCTCAATCATGTCG 60.462 55.000 0.00 0.00 0.00 4.35
96 97 1.143838 CCCGGCTCAATCATGTCGA 59.856 57.895 0.00 0.00 0.00 4.20
97 98 0.877649 CCCGGCTCAATCATGTCGAG 60.878 60.000 0.00 0.00 0.00 4.04
98 99 0.877649 CCGGCTCAATCATGTCGAGG 60.878 60.000 0.00 0.00 0.00 4.63
99 100 0.103026 CGGCTCAATCATGTCGAGGA 59.897 55.000 9.67 0.00 0.00 3.71
100 101 1.576356 GGCTCAATCATGTCGAGGAC 58.424 55.000 9.67 0.00 0.00 3.85
101 102 1.137872 GGCTCAATCATGTCGAGGACT 59.862 52.381 9.67 0.00 33.15 3.85
102 103 2.200067 GCTCAATCATGTCGAGGACTG 58.800 52.381 9.67 0.00 33.15 3.51
103 104 2.819115 CTCAATCATGTCGAGGACTGG 58.181 52.381 0.00 0.00 33.15 4.00
104 105 2.428530 CTCAATCATGTCGAGGACTGGA 59.571 50.000 0.00 0.00 33.15 3.86
105 106 2.428530 TCAATCATGTCGAGGACTGGAG 59.571 50.000 0.00 0.00 33.15 3.86
106 107 0.749649 ATCATGTCGAGGACTGGAGC 59.250 55.000 0.00 0.00 33.15 4.70
107 108 1.226802 CATGTCGAGGACTGGAGCG 60.227 63.158 0.00 0.00 33.15 5.03
108 109 1.378646 ATGTCGAGGACTGGAGCGA 60.379 57.895 0.00 0.00 33.15 4.93
109 110 2.486042 GTCGAGGACTGGAGCGAC 59.514 66.667 0.00 0.00 44.83 5.19
110 111 2.750637 TCGAGGACTGGAGCGACC 60.751 66.667 0.00 0.00 39.54 4.79
119 120 3.715871 TGGAGCGACCATTTGAACA 57.284 47.368 1.68 0.00 44.64 3.18
120 121 1.974265 TGGAGCGACCATTTGAACAA 58.026 45.000 1.68 0.00 44.64 2.83
121 122 1.606668 TGGAGCGACCATTTGAACAAC 59.393 47.619 1.68 0.00 44.64 3.32
122 123 1.880027 GGAGCGACCATTTGAACAACT 59.120 47.619 0.00 0.00 38.79 3.16
123 124 2.293399 GGAGCGACCATTTGAACAACTT 59.707 45.455 0.00 0.00 38.79 2.66
124 125 3.300009 GAGCGACCATTTGAACAACTTG 58.700 45.455 0.00 0.00 0.00 3.16
125 126 2.687935 AGCGACCATTTGAACAACTTGT 59.312 40.909 0.00 0.00 0.00 3.16
126 127 3.130340 AGCGACCATTTGAACAACTTGTT 59.870 39.130 6.87 6.87 44.37 2.83
127 128 4.336993 AGCGACCATTTGAACAACTTGTTA 59.663 37.500 7.15 0.00 41.28 2.41
128 129 4.439776 GCGACCATTTGAACAACTTGTTAC 59.560 41.667 7.15 2.88 41.28 2.50
129 130 5.574082 CGACCATTTGAACAACTTGTTACA 58.426 37.500 7.15 5.21 41.28 2.41
130 131 5.454232 CGACCATTTGAACAACTTGTTACAC 59.546 40.000 7.15 0.00 41.28 2.90
131 132 5.656480 ACCATTTGAACAACTTGTTACACC 58.344 37.500 7.15 0.00 41.28 4.16
132 133 5.420739 ACCATTTGAACAACTTGTTACACCT 59.579 36.000 7.15 0.00 41.28 4.00
133 134 6.071051 ACCATTTGAACAACTTGTTACACCTT 60.071 34.615 7.15 0.00 41.28 3.50
134 135 6.475402 CCATTTGAACAACTTGTTACACCTTC 59.525 38.462 7.15 0.00 41.28 3.46
135 136 6.827586 TTTGAACAACTTGTTACACCTTCT 57.172 33.333 7.15 0.00 41.28 2.85
136 137 6.827586 TTGAACAACTTGTTACACCTTCTT 57.172 33.333 7.15 0.00 41.28 2.52
137 138 6.189677 TGAACAACTTGTTACACCTTCTTG 57.810 37.500 7.15 0.00 41.28 3.02
138 139 5.941058 TGAACAACTTGTTACACCTTCTTGA 59.059 36.000 7.15 0.00 41.28 3.02
139 140 6.093495 TGAACAACTTGTTACACCTTCTTGAG 59.907 38.462 7.15 0.00 41.28 3.02
140 141 5.741011 ACAACTTGTTACACCTTCTTGAGA 58.259 37.500 0.00 0.00 0.00 3.27
141 142 6.177610 ACAACTTGTTACACCTTCTTGAGAA 58.822 36.000 0.00 0.00 0.00 2.87
142 143 7.148239 AACAACTTGTTACACCTTCTTGAGAAG 60.148 37.037 12.72 12.72 43.50 2.85
149 150 3.914984 CTTCTTGAGAAGCCGTGGA 57.085 52.632 7.74 0.00 44.10 4.02
150 151 1.719600 CTTCTTGAGAAGCCGTGGAG 58.280 55.000 7.74 0.00 44.10 3.86
151 152 1.001406 CTTCTTGAGAAGCCGTGGAGT 59.999 52.381 7.74 0.00 44.10 3.85
152 153 1.048601 TCTTGAGAAGCCGTGGAGTT 58.951 50.000 0.00 0.00 0.00 3.01
153 154 1.416401 TCTTGAGAAGCCGTGGAGTTT 59.584 47.619 0.00 0.00 0.00 2.66
154 155 1.532868 CTTGAGAAGCCGTGGAGTTTG 59.467 52.381 0.00 0.00 0.00 2.93
155 156 0.468226 TGAGAAGCCGTGGAGTTTGT 59.532 50.000 0.00 0.00 0.00 2.83
156 157 1.689813 TGAGAAGCCGTGGAGTTTGTA 59.310 47.619 0.00 0.00 0.00 2.41
157 158 2.301870 TGAGAAGCCGTGGAGTTTGTAT 59.698 45.455 0.00 0.00 0.00 2.29
158 159 3.244422 TGAGAAGCCGTGGAGTTTGTATT 60.244 43.478 0.00 0.00 0.00 1.89
159 160 3.074412 AGAAGCCGTGGAGTTTGTATTG 58.926 45.455 0.00 0.00 0.00 1.90
160 161 1.165270 AGCCGTGGAGTTTGTATTGC 58.835 50.000 0.00 0.00 0.00 3.56
161 162 1.165270 GCCGTGGAGTTTGTATTGCT 58.835 50.000 0.00 0.00 0.00 3.91
162 163 1.130561 GCCGTGGAGTTTGTATTGCTC 59.869 52.381 0.00 0.00 0.00 4.26
163 164 1.393539 CCGTGGAGTTTGTATTGCTCG 59.606 52.381 0.00 0.00 0.00 5.03
164 165 2.066262 CGTGGAGTTTGTATTGCTCGT 58.934 47.619 0.00 0.00 0.00 4.18
165 166 3.247442 CGTGGAGTTTGTATTGCTCGTA 58.753 45.455 0.00 0.00 0.00 3.43
166 167 3.060363 CGTGGAGTTTGTATTGCTCGTAC 59.940 47.826 0.00 0.00 0.00 3.67
167 168 3.370061 GTGGAGTTTGTATTGCTCGTACC 59.630 47.826 0.00 0.00 0.00 3.34
168 169 2.601763 GGAGTTTGTATTGCTCGTACCG 59.398 50.000 0.00 0.00 0.00 4.02
169 170 3.248266 GAGTTTGTATTGCTCGTACCGT 58.752 45.455 0.00 0.00 0.00 4.83
170 171 3.656559 AGTTTGTATTGCTCGTACCGTT 58.343 40.909 0.00 0.00 0.00 4.44
171 172 3.430895 AGTTTGTATTGCTCGTACCGTTG 59.569 43.478 0.00 0.00 0.00 4.10
172 173 1.999048 TGTATTGCTCGTACCGTTGG 58.001 50.000 0.00 0.00 0.00 3.77
173 174 1.283736 GTATTGCTCGTACCGTTGGG 58.716 55.000 0.00 0.00 40.11 4.12
174 175 1.135024 GTATTGCTCGTACCGTTGGGA 60.135 52.381 0.00 0.00 36.97 4.37
175 176 0.390735 ATTGCTCGTACCGTTGGGAC 60.391 55.000 0.00 0.00 36.97 4.46
184 185 2.742372 CGTTGGGACGCCAGGAAG 60.742 66.667 0.00 0.00 43.03 3.46
185 186 2.359975 GTTGGGACGCCAGGAAGG 60.360 66.667 0.00 0.00 41.84 3.46
186 187 2.528127 TTGGGACGCCAGGAAGGA 60.528 61.111 0.00 0.00 41.22 3.36
187 188 2.592993 TTGGGACGCCAGGAAGGAG 61.593 63.158 0.00 0.00 43.77 3.69
192 193 3.599584 CGCCAGGAAGGAGTACGA 58.400 61.111 0.00 0.00 41.22 3.43
193 194 1.433879 CGCCAGGAAGGAGTACGAG 59.566 63.158 0.00 0.00 41.22 4.18
194 195 1.817209 GCCAGGAAGGAGTACGAGG 59.183 63.158 0.00 0.00 41.22 4.63
195 196 0.683504 GCCAGGAAGGAGTACGAGGA 60.684 60.000 0.00 0.00 41.22 3.71
196 197 1.848652 CCAGGAAGGAGTACGAGGAA 58.151 55.000 0.00 0.00 41.22 3.36
197 198 2.389715 CCAGGAAGGAGTACGAGGAAT 58.610 52.381 0.00 0.00 41.22 3.01
198 199 2.101582 CCAGGAAGGAGTACGAGGAATG 59.898 54.545 0.00 0.00 41.22 2.67
199 200 2.761208 CAGGAAGGAGTACGAGGAATGT 59.239 50.000 0.00 0.00 0.00 2.71
200 201 2.761208 AGGAAGGAGTACGAGGAATGTG 59.239 50.000 0.00 0.00 0.00 3.21
201 202 2.758979 GGAAGGAGTACGAGGAATGTGA 59.241 50.000 0.00 0.00 0.00 3.58
202 203 3.385111 GGAAGGAGTACGAGGAATGTGAT 59.615 47.826 0.00 0.00 0.00 3.06
203 204 4.141914 GGAAGGAGTACGAGGAATGTGATT 60.142 45.833 0.00 0.00 0.00 2.57
204 205 4.392921 AGGAGTACGAGGAATGTGATTG 57.607 45.455 0.00 0.00 0.00 2.67
205 206 3.133003 AGGAGTACGAGGAATGTGATTGG 59.867 47.826 0.00 0.00 0.00 3.16
206 207 3.458189 GAGTACGAGGAATGTGATTGGG 58.542 50.000 0.00 0.00 0.00 4.12
207 208 3.104512 AGTACGAGGAATGTGATTGGGA 58.895 45.455 0.00 0.00 0.00 4.37
208 209 2.698855 ACGAGGAATGTGATTGGGAG 57.301 50.000 0.00 0.00 0.00 4.30
209 210 1.303309 CGAGGAATGTGATTGGGAGC 58.697 55.000 0.00 0.00 0.00 4.70
210 211 1.134280 CGAGGAATGTGATTGGGAGCT 60.134 52.381 0.00 0.00 0.00 4.09
211 212 2.295885 GAGGAATGTGATTGGGAGCTG 58.704 52.381 0.00 0.00 0.00 4.24
212 213 0.743097 GGAATGTGATTGGGAGCTGC 59.257 55.000 0.00 0.00 0.00 5.25
213 214 1.466856 GAATGTGATTGGGAGCTGCA 58.533 50.000 7.79 0.00 0.00 4.41
214 215 1.404391 GAATGTGATTGGGAGCTGCAG 59.596 52.381 10.11 10.11 0.00 4.41
215 216 0.395311 ATGTGATTGGGAGCTGCAGG 60.395 55.000 17.12 0.00 0.00 4.85
216 217 1.751927 GTGATTGGGAGCTGCAGGG 60.752 63.158 17.12 0.00 0.00 4.45
217 218 1.924939 TGATTGGGAGCTGCAGGGA 60.925 57.895 17.12 0.00 0.00 4.20
218 219 1.452833 GATTGGGAGCTGCAGGGAC 60.453 63.158 17.12 0.00 0.00 4.46
219 220 2.900671 GATTGGGAGCTGCAGGGACC 62.901 65.000 17.12 0.00 0.00 4.46
220 221 4.980592 TGGGAGCTGCAGGGACCA 62.981 66.667 17.12 0.00 0.00 4.02
221 222 4.106925 GGGAGCTGCAGGGACCAG 62.107 72.222 17.12 0.00 0.00 4.00
222 223 3.005539 GGAGCTGCAGGGACCAGA 61.006 66.667 17.12 0.00 32.03 3.86
223 224 2.583520 GAGCTGCAGGGACCAGAG 59.416 66.667 17.12 0.00 32.03 3.35
224 225 3.678951 GAGCTGCAGGGACCAGAGC 62.679 68.421 17.12 0.00 32.03 4.09
225 226 3.715097 GCTGCAGGGACCAGAGCT 61.715 66.667 17.12 0.00 32.03 4.09
226 227 2.583520 CTGCAGGGACCAGAGCTC 59.416 66.667 5.27 5.27 32.03 4.09
227 228 3.368190 CTGCAGGGACCAGAGCTCG 62.368 68.421 8.37 3.24 32.03 5.03
228 229 4.154347 GCAGGGACCAGAGCTCGG 62.154 72.222 19.02 19.02 0.00 4.63
229 230 3.465403 CAGGGACCAGAGCTCGGG 61.465 72.222 28.76 28.76 37.23 5.14
230 231 3.673597 AGGGACCAGAGCTCGGGA 61.674 66.667 35.56 0.00 35.12 5.14
231 232 3.151022 GGGACCAGAGCTCGGGAG 61.151 72.222 35.56 15.59 35.12 4.30
232 233 3.151022 GGACCAGAGCTCGGGAGG 61.151 72.222 35.56 23.74 35.12 4.30
233 234 2.363147 GACCAGAGCTCGGGAGGT 60.363 66.667 35.56 26.47 42.58 3.85
234 235 2.681778 ACCAGAGCTCGGGAGGTG 60.682 66.667 35.56 14.99 39.57 4.00
235 236 3.465403 CCAGAGCTCGGGAGGTGG 61.465 72.222 26.95 14.72 39.57 4.61
236 237 3.465403 CAGAGCTCGGGAGGTGGG 61.465 72.222 8.37 0.00 39.57 4.61
237 238 3.673597 AGAGCTCGGGAGGTGGGA 61.674 66.667 8.37 0.00 39.57 4.37
238 239 2.444895 GAGCTCGGGAGGTGGGAT 60.445 66.667 4.94 0.00 39.57 3.85
239 240 2.765807 AGCTCGGGAGGTGGGATG 60.766 66.667 0.00 0.00 37.82 3.51
240 241 2.764128 GCTCGGGAGGTGGGATGA 60.764 66.667 0.00 0.00 0.00 2.92
241 242 2.801631 GCTCGGGAGGTGGGATGAG 61.802 68.421 0.00 0.00 0.00 2.90
242 243 2.764128 TCGGGAGGTGGGATGAGC 60.764 66.667 0.00 0.00 0.00 4.26
243 244 3.083349 CGGGAGGTGGGATGAGCA 61.083 66.667 0.00 0.00 0.00 4.26
244 245 2.669133 CGGGAGGTGGGATGAGCAA 61.669 63.158 0.00 0.00 0.00 3.91
245 246 1.225704 GGGAGGTGGGATGAGCAAG 59.774 63.158 0.00 0.00 0.00 4.01
246 247 1.225704 GGAGGTGGGATGAGCAAGG 59.774 63.158 0.00 0.00 0.00 3.61
247 248 1.274703 GGAGGTGGGATGAGCAAGGA 61.275 60.000 0.00 0.00 0.00 3.36
248 249 0.179936 GAGGTGGGATGAGCAAGGAG 59.820 60.000 0.00 0.00 0.00 3.69
249 250 1.225704 GGTGGGATGAGCAAGGAGG 59.774 63.158 0.00 0.00 0.00 4.30
250 251 1.225704 GTGGGATGAGCAAGGAGGG 59.774 63.158 0.00 0.00 0.00 4.30
251 252 1.082766 TGGGATGAGCAAGGAGGGA 59.917 57.895 0.00 0.00 0.00 4.20
252 253 1.274703 TGGGATGAGCAAGGAGGGAC 61.275 60.000 0.00 0.00 0.00 4.46
253 254 1.274703 GGGATGAGCAAGGAGGGACA 61.275 60.000 0.00 0.00 0.00 4.02
254 255 0.179936 GGATGAGCAAGGAGGGACAG 59.820 60.000 0.00 0.00 0.00 3.51
264 265 3.983044 AGGAGGGACAGTGTCATTTAC 57.017 47.619 24.20 9.88 33.68 2.01
275 276 5.120208 ACAGTGTCATTTACGGAATTCTTCG 59.880 40.000 5.23 3.98 0.00 3.79
277 278 5.120208 AGTGTCATTTACGGAATTCTTCGTG 59.880 40.000 16.82 3.89 40.05 4.35
278 279 4.390603 TGTCATTTACGGAATTCTTCGTGG 59.609 41.667 16.82 6.78 40.05 4.94
279 280 4.628333 GTCATTTACGGAATTCTTCGTGGA 59.372 41.667 16.82 7.92 40.05 4.02
298 299 4.330620 GTGGACAACTACGAACACTTTGAA 59.669 41.667 0.00 0.00 0.00 2.69
302 303 6.018180 GGACAACTACGAACACTTTGAAGAAT 60.018 38.462 0.00 0.00 0.00 2.40
304 305 6.315393 ACAACTACGAACACTTTGAAGAATGT 59.685 34.615 0.00 0.00 0.00 2.71
311 312 1.537202 ACTTTGAAGAATGTCTGCGCC 59.463 47.619 4.18 0.00 0.00 6.53
322 323 3.430862 CTGCGCCGCTGCCTAAAA 61.431 61.111 11.67 0.00 0.00 1.52
342 343 1.447314 CTTACCGCAACGACCTCCC 60.447 63.158 0.00 0.00 0.00 4.30
393 394 4.202398 CCCTTTTATAGATGAGCTCCTGCA 60.202 45.833 12.15 0.00 42.74 4.41
406 407 3.406361 CTGCACGCGCTCGAAACT 61.406 61.111 5.73 0.00 39.64 2.66
553 554 0.464916 ACCACTTTCACGTCCCAACC 60.465 55.000 0.00 0.00 0.00 3.77
679 680 2.568623 AGCCAATCGACCTTCTTGTT 57.431 45.000 0.00 0.00 0.00 2.83
783 784 0.906775 GAATCCCAGTTACCGGTCCA 59.093 55.000 12.40 0.00 0.00 4.02
820 821 2.693074 GGTCTTTCTTGCCAACTTTCCA 59.307 45.455 0.00 0.00 0.00 3.53
836 837 4.212004 ACTTTCCATATGCGAACATGATCG 59.788 41.667 19.85 19.85 45.41 3.69
847 848 3.599514 CGAACATGATCGTGCTTGTTTTC 59.400 43.478 16.43 8.85 36.60 2.29
861 862 7.033185 GTGCTTGTTTTCCTCTTTCTTTTACA 58.967 34.615 0.00 0.00 0.00 2.41
902 905 9.546909 CTTGTAATGTTTGCAACTCTATTGTAG 57.453 33.333 0.00 0.00 31.89 2.74
903 906 8.039603 TGTAATGTTTGCAACTCTATTGTAGG 57.960 34.615 0.00 0.00 0.00 3.18
906 909 8.630054 AATGTTTGCAACTCTATTGTAGGTTA 57.370 30.769 0.00 0.00 0.00 2.85
911 914 4.571176 GCAACTCTATTGTAGGTTACAGGC 59.429 45.833 0.00 0.00 40.24 4.85
914 917 4.161754 ACTCTATTGTAGGTTACAGGCCAC 59.838 45.833 5.01 0.00 40.24 5.01
916 919 1.737199 TTGTAGGTTACAGGCCACCT 58.263 50.000 16.22 16.22 45.85 4.00
999 1002 1.269723 CTCCTTGACGTGCAGTACAGA 59.730 52.381 0.00 0.00 0.00 3.41
1010 1013 0.744414 CAGTACAGAATGCACCCGGG 60.744 60.000 22.25 22.25 42.53 5.73
1032 1035 2.038863 TAAGCAAGTTCCCCCTCTCA 57.961 50.000 0.00 0.00 0.00 3.27
1246 1249 4.940046 AGAGATTGTTCAATGGTGCTGTAG 59.060 41.667 2.63 0.00 0.00 2.74
1266 1269 7.148222 GCTGTAGTTTGATCAGTCACTAGTAGA 60.148 40.741 3.59 0.00 33.11 2.59
1308 1313 9.915629 GTTTACCTTCTATCTACAATCGATGAT 57.084 33.333 0.00 0.00 0.00 2.45
1400 1405 0.174162 GTGGTATCGCCGTACAAGGT 59.826 55.000 0.00 0.00 41.21 3.50
1425 1430 2.202987 CACGCCATCCAGGAGAGC 60.203 66.667 0.00 0.00 40.01 4.09
1444 1449 2.676822 TCGGAAGGCTCGAGTGCT 60.677 61.111 15.13 0.00 32.51 4.40
1552 1557 4.332637 CCGTGCACAGCAACAGCC 62.333 66.667 18.64 0.00 41.47 4.85
1563 1568 4.619227 AACAGCCACGGGTCGGTG 62.619 66.667 2.25 2.25 37.66 4.94
1594 1599 4.681978 ACTGGAGGCGCACGAACC 62.682 66.667 10.83 5.15 0.00 3.62
1648 1659 8.908786 AAAATCTCTTCAGTTCAGTCACATAA 57.091 30.769 0.00 0.00 0.00 1.90
1662 1673 3.677596 GTCACATAAAACAATTTGGGCCG 59.322 43.478 0.00 0.00 0.00 6.13
1671 1682 2.065512 CAATTTGGGCCGCTGTAAAAC 58.934 47.619 0.00 0.00 0.00 2.43
1672 1683 0.606096 ATTTGGGCCGCTGTAAAACC 59.394 50.000 0.00 0.00 0.00 3.27
1679 1691 1.081094 CCGCTGTAAAACCCTAACGG 58.919 55.000 0.00 0.00 37.81 4.44
1690 1702 0.663568 CCCTAACGGCGATCGACATC 60.664 60.000 23.01 1.33 42.43 3.06
1691 1703 0.030235 CCTAACGGCGATCGACATCA 59.970 55.000 23.01 3.29 42.43 3.07
1693 1705 2.394708 CTAACGGCGATCGACATCATT 58.605 47.619 23.01 11.55 42.43 2.57
1694 1706 0.930310 AACGGCGATCGACATCATTG 59.070 50.000 23.01 5.68 42.43 2.82
1697 1709 1.290203 GGCGATCGACATCATTGTGT 58.710 50.000 21.57 0.00 35.79 3.72
1698 1710 1.665679 GGCGATCGACATCATTGTGTT 59.334 47.619 21.57 0.00 35.79 3.32
1699 1711 2.863740 GGCGATCGACATCATTGTGTTA 59.136 45.455 21.57 0.00 35.79 2.41
1700 1712 3.494626 GGCGATCGACATCATTGTGTTAT 59.505 43.478 21.57 0.00 35.79 1.89
1706 1718 7.579093 CGATCGACATCATTGTGTTATTGTTAC 59.421 37.037 10.26 0.00 35.79 2.50
1722 1734 2.070783 GTTACGTTCTTCCATCCGCAA 58.929 47.619 0.00 0.00 0.00 4.85
1745 1757 2.360191 GCCTTTGGATCCTGGGCA 59.640 61.111 26.61 1.94 42.08 5.36
1748 1760 0.040204 CCTTTGGATCCTGGGCAACT 59.960 55.000 14.23 0.00 0.00 3.16
1783 1795 1.300971 GCAGCAAGACGATCTGGCAA 61.301 55.000 14.27 0.00 45.88 4.52
1789 1801 3.491619 GCAAGACGATCTGGCAAGAGATA 60.492 47.826 0.00 0.00 42.97 1.98
1807 1819 2.102109 TAGTGGCCGACGCAAAGGAA 62.102 55.000 0.00 0.00 36.38 3.36
1822 1834 4.593956 CAAAGGAAAGAGGGTGCTTCTAT 58.406 43.478 0.00 0.00 0.00 1.98
1832 1844 2.426522 GGTGCTTCTATGACTGCAACA 58.573 47.619 0.00 0.00 42.11 3.33
1834 1846 3.365364 GGTGCTTCTATGACTGCAACAAC 60.365 47.826 0.00 0.00 42.11 3.32
1838 1850 2.324860 TCTATGACTGCAACAACGACG 58.675 47.619 0.00 0.00 0.00 5.12
1846 1858 0.878961 GCAACAACGACGAGGACCTT 60.879 55.000 0.00 0.00 0.00 3.50
1855 1867 4.329545 GAGGACCTTGCGGCCACA 62.330 66.667 2.24 0.00 0.00 4.17
1861 1873 2.038269 CCTTGCGGCCACAATACGT 61.038 57.895 6.66 0.00 0.00 3.57
1878 1890 4.124351 TGACGCCGTGGTCGATCC 62.124 66.667 0.00 0.00 39.83 3.36
1890 1902 1.006220 TCGATCCGCCGGATGAATG 60.006 57.895 25.80 10.47 43.27 2.67
1893 1905 1.151668 GATCCGCCGGATGAATGAAG 58.848 55.000 25.80 0.00 43.27 3.02
1894 1906 0.469917 ATCCGCCGGATGAATGAAGT 59.530 50.000 19.67 0.00 41.43 3.01
1895 1907 0.461870 TCCGCCGGATGAATGAAGTG 60.462 55.000 5.05 0.00 0.00 3.16
1896 1908 1.439353 CCGCCGGATGAATGAAGTGG 61.439 60.000 5.05 0.00 0.00 4.00
1897 1909 0.461870 CGCCGGATGAATGAAGTGGA 60.462 55.000 5.05 0.00 0.00 4.02
1898 1910 1.017387 GCCGGATGAATGAAGTGGAC 58.983 55.000 5.05 0.00 0.00 4.02
1899 1911 1.678728 GCCGGATGAATGAAGTGGACA 60.679 52.381 5.05 0.00 0.00 4.02
1900 1912 2.009774 CCGGATGAATGAAGTGGACAC 58.990 52.381 0.00 0.00 0.00 3.67
1908 1920 2.325583 TGAAGTGGACACTGGACAAC 57.674 50.000 5.63 0.00 41.58 3.32
1918 1930 0.546122 ACTGGACAACCTGCTCAACA 59.454 50.000 0.00 0.00 38.45 3.33
1920 1932 1.538512 CTGGACAACCTGCTCAACATG 59.461 52.381 0.00 0.00 37.04 3.21
1921 1933 1.133823 TGGACAACCTGCTCAACATGT 60.134 47.619 0.00 0.00 37.04 3.21
1923 1935 2.484264 GGACAACCTGCTCAACATGTAC 59.516 50.000 0.00 0.00 0.00 2.90
1929 1941 1.159285 TGCTCAACATGTACAGCAGC 58.841 50.000 21.96 14.51 36.96 5.25
1930 1942 1.271001 TGCTCAACATGTACAGCAGCT 60.271 47.619 21.96 0.00 36.96 4.24
1941 1953 0.105039 ACAGCAGCTTCGTATAGGCC 59.895 55.000 0.00 0.00 0.00 5.19
1943 1955 1.107538 AGCAGCTTCGTATAGGCCGA 61.108 55.000 0.00 0.00 0.00 5.54
1968 1987 5.011125 CCATGATCTAGGGTACGAATGAACT 59.989 44.000 0.00 0.00 0.00 3.01
1969 1988 5.515797 TGATCTAGGGTACGAATGAACTG 57.484 43.478 0.00 0.00 0.00 3.16
1971 1990 5.299531 TGATCTAGGGTACGAATGAACTGAG 59.700 44.000 0.00 0.00 0.00 3.35
1972 1991 4.597004 TCTAGGGTACGAATGAACTGAGT 58.403 43.478 0.00 0.00 0.00 3.41
1976 1995 3.056035 GGGTACGAATGAACTGAGTCCTT 60.056 47.826 0.00 0.00 0.00 3.36
1979 1998 3.393800 ACGAATGAACTGAGTCCTTGTG 58.606 45.455 0.00 0.00 0.00 3.33
1985 2004 2.246719 ACTGAGTCCTTGTGCTTGTC 57.753 50.000 0.00 0.00 0.00 3.18
1990 2009 2.945668 GAGTCCTTGTGCTTGTCAAGTT 59.054 45.455 14.03 0.00 40.15 2.66
2005 2024 2.948979 TCAAGTTGACAACGAGCCAATT 59.051 40.909 12.54 0.00 36.23 2.32
2006 2025 3.380004 TCAAGTTGACAACGAGCCAATTT 59.620 39.130 12.54 0.00 36.23 1.82
2012 2031 1.950909 ACAACGAGCCAATTTCCGAAA 59.049 42.857 0.00 0.00 0.00 3.46
2013 2032 2.031157 ACAACGAGCCAATTTCCGAAAG 60.031 45.455 0.00 0.00 0.00 2.62
2014 2033 2.178912 ACGAGCCAATTTCCGAAAGA 57.821 45.000 0.00 0.00 0.00 2.52
2015 2034 2.076863 ACGAGCCAATTTCCGAAAGAG 58.923 47.619 0.00 0.00 0.00 2.85
2016 2035 2.289444 ACGAGCCAATTTCCGAAAGAGA 60.289 45.455 0.00 0.00 0.00 3.10
2017 2036 2.094417 CGAGCCAATTTCCGAAAGAGAC 59.906 50.000 0.00 0.00 0.00 3.36
2018 2037 3.074412 GAGCCAATTTCCGAAAGAGACA 58.926 45.455 0.00 0.00 0.00 3.41
2019 2038 3.690460 AGCCAATTTCCGAAAGAGACAT 58.310 40.909 0.00 0.00 0.00 3.06
2020 2039 3.691609 AGCCAATTTCCGAAAGAGACATC 59.308 43.478 0.00 0.00 0.00 3.06
2021 2040 3.440173 GCCAATTTCCGAAAGAGACATCA 59.560 43.478 0.00 0.00 0.00 3.07
2022 2041 4.437930 GCCAATTTCCGAAAGAGACATCAG 60.438 45.833 0.00 0.00 0.00 2.90
2027 2046 4.645762 TCCGAAAGAGACATCAGAGATG 57.354 45.455 5.50 5.50 0.00 2.90
2033 2052 2.369203 AGAGACATCAGAGATGCATGGG 59.631 50.000 2.46 0.00 0.00 4.00
2039 2058 2.923121 TCAGAGATGCATGGGCTTAAC 58.077 47.619 2.46 0.00 41.91 2.01
2050 2069 0.958876 GGGCTTAACCTGTTGGACCG 60.959 60.000 0.00 0.00 39.10 4.79
2055 2074 2.014010 TAACCTGTTGGACCGGTAGT 57.986 50.000 7.34 0.00 34.47 2.73
2057 2076 2.014010 ACCTGTTGGACCGGTAGTTA 57.986 50.000 7.34 0.00 33.76 2.24
2058 2077 1.897802 ACCTGTTGGACCGGTAGTTAG 59.102 52.381 7.34 2.47 33.76 2.34
2059 2078 1.206371 CCTGTTGGACCGGTAGTTAGG 59.794 57.143 7.34 8.59 34.57 2.69
2060 2079 1.897802 CTGTTGGACCGGTAGTTAGGT 59.102 52.381 7.34 0.00 44.64 3.08
2061 2080 2.301009 CTGTTGGACCGGTAGTTAGGTT 59.699 50.000 7.34 0.00 41.51 3.50
2062 2081 2.705127 TGTTGGACCGGTAGTTAGGTTT 59.295 45.455 7.34 0.00 41.51 3.27
2063 2082 3.069289 GTTGGACCGGTAGTTAGGTTTG 58.931 50.000 7.34 0.00 41.51 2.93
2064 2083 2.328319 TGGACCGGTAGTTAGGTTTGT 58.672 47.619 7.34 0.00 41.51 2.83
2065 2084 3.505386 TGGACCGGTAGTTAGGTTTGTA 58.495 45.455 7.34 0.00 41.51 2.41
2066 2085 3.900601 TGGACCGGTAGTTAGGTTTGTAA 59.099 43.478 7.34 0.00 41.51 2.41
2067 2086 4.021192 TGGACCGGTAGTTAGGTTTGTAAG 60.021 45.833 7.34 0.00 41.51 2.34
2068 2087 4.021104 GGACCGGTAGTTAGGTTTGTAAGT 60.021 45.833 7.34 0.00 41.51 2.24
2069 2088 5.139435 ACCGGTAGTTAGGTTTGTAAGTC 57.861 43.478 4.49 0.00 37.49 3.01
2070 2089 4.835056 ACCGGTAGTTAGGTTTGTAAGTCT 59.165 41.667 4.49 0.00 37.49 3.24
2071 2090 5.047731 ACCGGTAGTTAGGTTTGTAAGTCTC 60.048 44.000 4.49 0.00 37.49 3.36
2072 2091 5.047802 CCGGTAGTTAGGTTTGTAAGTCTCA 60.048 44.000 0.00 0.00 0.00 3.27
2073 2092 6.091437 CGGTAGTTAGGTTTGTAAGTCTCAG 58.909 44.000 0.00 0.00 0.00 3.35
2081 2100 4.452795 GGTTTGTAAGTCTCAGCTTCCTTC 59.547 45.833 0.00 0.00 0.00 3.46
2088 2107 0.392729 CTCAGCTTCCTTCCCTGCAG 60.393 60.000 6.78 6.78 0.00 4.41
2119 2138 8.332996 CAGGAGGAACTGGATATGAAATTATG 57.667 38.462 0.00 0.00 41.55 1.90
2120 2139 8.159447 CAGGAGGAACTGGATATGAAATTATGA 58.841 37.037 0.00 0.00 41.55 2.15
2121 2140 8.727149 AGGAGGAACTGGATATGAAATTATGAA 58.273 33.333 0.00 0.00 41.55 2.57
2122 2141 8.787852 GGAGGAACTGGATATGAAATTATGAAC 58.212 37.037 0.00 0.00 41.55 3.18
2123 2142 8.383318 AGGAACTGGATATGAAATTATGAACG 57.617 34.615 0.00 0.00 37.18 3.95
2124 2143 7.445402 AGGAACTGGATATGAAATTATGAACGG 59.555 37.037 0.00 0.00 37.18 4.44
2125 2144 7.444183 GGAACTGGATATGAAATTATGAACGGA 59.556 37.037 0.00 0.00 0.00 4.69
2126 2145 7.730364 ACTGGATATGAAATTATGAACGGAC 57.270 36.000 0.00 0.00 0.00 4.79
2130 2149 7.023575 GGATATGAAATTATGAACGGACATGC 58.976 38.462 0.00 0.00 0.00 4.06
2150 2169 0.462047 CTGGTAGGGATGCGGTTGTC 60.462 60.000 0.00 0.00 0.00 3.18
2159 2178 2.414559 GGATGCGGTTGTCTGTCAATTG 60.415 50.000 0.00 0.00 38.38 2.32
2160 2179 1.674359 TGCGGTTGTCTGTCAATTGT 58.326 45.000 5.13 0.00 38.38 2.71
2164 2183 1.334960 GGTTGTCTGTCAATTGTGCGG 60.335 52.381 5.13 5.42 38.38 5.69
2166 2185 0.817229 TGTCTGTCAATTGTGCGGCA 60.817 50.000 5.13 0.00 0.00 5.69
2168 2187 1.443194 CTGTCAATTGTGCGGCAGC 60.443 57.895 1.18 0.31 45.41 5.25
2172 2199 0.607762 TCAATTGTGCGGCAGCCTTA 60.608 50.000 10.54 0.00 44.33 2.69
2185 2212 4.645809 CCTTAGGAGGCCAACTGC 57.354 61.111 5.01 0.00 35.94 4.40
2186 2213 1.450312 CCTTAGGAGGCCAACTGCG 60.450 63.158 5.01 0.00 43.20 5.18
2187 2214 2.046314 TTAGGAGGCCAACTGCGC 60.046 61.111 5.01 0.00 43.20 6.09
2188 2215 3.950794 TTAGGAGGCCAACTGCGCG 62.951 63.158 5.01 0.00 43.20 6.86
2195 2222 3.291383 CCAACTGCGCGGGGAAAA 61.291 61.111 22.44 0.00 0.00 2.29
2196 2223 2.725008 CAACTGCGCGGGGAAAAA 59.275 55.556 22.44 0.00 0.00 1.94
2198 2225 1.008361 CAACTGCGCGGGGAAAAATG 61.008 55.000 22.44 3.89 0.00 2.32
2199 2226 1.175983 AACTGCGCGGGGAAAAATGA 61.176 50.000 22.44 0.00 0.00 2.57
2200 2227 0.965363 ACTGCGCGGGGAAAAATGAT 60.965 50.000 22.44 0.00 0.00 2.45
2201 2228 0.526096 CTGCGCGGGGAAAAATGATG 60.526 55.000 8.83 0.00 0.00 3.07
2202 2229 1.247419 TGCGCGGGGAAAAATGATGT 61.247 50.000 8.83 0.00 0.00 3.06
2203 2230 0.108851 GCGCGGGGAAAAATGATGTT 60.109 50.000 8.83 0.00 0.00 2.71
2207 2256 2.491693 GCGGGGAAAAATGATGTTCTGA 59.508 45.455 0.00 0.00 0.00 3.27
2217 2266 6.600882 AAATGATGTTCTGAAAGCCTTGAT 57.399 33.333 0.00 0.00 0.00 2.57
2222 2281 2.678336 GTTCTGAAAGCCTTGATACCCG 59.322 50.000 0.00 0.00 0.00 5.28
2231 2290 2.354805 GCCTTGATACCCGTTGTTCTCT 60.355 50.000 0.00 0.00 0.00 3.10
2236 2295 1.263356 TACCCGTTGTTCTCTCCTGG 58.737 55.000 0.00 0.00 0.00 4.45
2241 2308 2.761208 CCGTTGTTCTCTCCTGGATACT 59.239 50.000 0.00 0.00 37.61 2.12
2248 2315 7.584122 TGTTCTCTCCTGGATACTACATTAC 57.416 40.000 0.00 0.00 37.61 1.89
2249 2316 7.355101 TGTTCTCTCCTGGATACTACATTACT 58.645 38.462 0.00 0.00 37.61 2.24
2288 2355 9.117183 AGTTACTTTCGATTTTGTTAAAGAGGT 57.883 29.630 0.00 0.00 33.98 3.85
2291 2358 8.851960 ACTTTCGATTTTGTTAAAGAGGTTTC 57.148 30.769 0.00 0.00 33.98 2.78
2295 2362 5.010213 CGATTTTGTTAAAGAGGTTTCCCCA 59.990 40.000 0.00 0.00 34.66 4.96
2302 2369 4.682021 AAAGAGGTTTCCCCATCTGATT 57.318 40.909 0.00 0.00 34.66 2.57
2312 2379 7.559897 GGTTTCCCCATCTGATTTCAACTATTA 59.440 37.037 0.00 0.00 0.00 0.98
2330 2397 2.050985 GCAACCAGCAGCACGTTC 60.051 61.111 0.00 0.00 44.79 3.95
2331 2398 2.833533 GCAACCAGCAGCACGTTCA 61.834 57.895 0.00 0.00 44.79 3.18
2332 2399 1.951510 CAACCAGCAGCACGTTCAT 59.048 52.632 0.00 0.00 0.00 2.57
2333 2400 0.386352 CAACCAGCAGCACGTTCATG 60.386 55.000 0.00 0.00 0.00 3.07
2334 2401 2.133742 AACCAGCAGCACGTTCATGC 62.134 55.000 8.04 8.04 46.50 4.06
2348 2415 3.186119 GTTCATGCTCTGTAGTGCTCTC 58.814 50.000 7.36 0.00 35.73 3.20
2353 2420 2.290577 TGCTCTGTAGTGCTCTCTCAGA 60.291 50.000 16.87 16.87 35.38 3.27
2356 2423 4.734402 GCTCTGTAGTGCTCTCTCAGATTG 60.734 50.000 17.64 11.63 35.77 2.67
2359 2426 2.676632 AGTGCTCTCTCAGATTGCTG 57.323 50.000 1.49 0.00 43.67 4.41
2361 2428 2.001159 GTGCTCTCTCAGATTGCTGTG 58.999 52.381 0.00 0.00 42.84 3.66
2365 2432 3.069300 GCTCTCTCAGATTGCTGTGGATA 59.931 47.826 0.00 0.00 42.84 2.59
2371 2438 4.201657 TCAGATTGCTGTGGATATTGGTG 58.798 43.478 0.00 0.00 42.84 4.17
2377 2444 2.488891 GCTGTGGATATTGGTGGCCATA 60.489 50.000 9.72 0.00 31.53 2.74
2381 2448 4.263462 TGTGGATATTGGTGGCCATAGATC 60.263 45.833 9.72 9.97 31.53 2.75
2382 2449 3.055167 TGGATATTGGTGGCCATAGATCG 60.055 47.826 9.72 0.00 31.53 3.69
2384 2451 4.141620 GGATATTGGTGGCCATAGATCGAT 60.142 45.833 9.72 0.00 31.53 3.59
2388 2455 1.344438 GGTGGCCATAGATCGATGTGA 59.656 52.381 9.72 0.00 0.00 3.58
2389 2456 2.611473 GGTGGCCATAGATCGATGTGAG 60.611 54.545 9.72 0.00 0.00 3.51
2390 2457 2.036475 GTGGCCATAGATCGATGTGAGT 59.964 50.000 9.72 0.00 0.00 3.41
2393 2460 2.669670 GCCATAGATCGATGTGAGTCCG 60.670 54.545 13.86 0.00 0.00 4.79
2394 2461 2.590073 CATAGATCGATGTGAGTCCGC 58.410 52.381 0.54 0.00 0.00 5.54
2396 2463 1.064296 GATCGATGTGAGTCCGCGT 59.936 57.895 0.54 0.00 0.00 6.01
2397 2464 0.525668 GATCGATGTGAGTCCGCGTT 60.526 55.000 0.54 0.00 0.00 4.84
2399 2466 0.098200 TCGATGTGAGTCCGCGTTAG 59.902 55.000 4.92 0.00 0.00 2.34
2400 2467 0.866061 CGATGTGAGTCCGCGTTAGG 60.866 60.000 4.92 0.00 0.00 2.69
2401 2468 1.146358 GATGTGAGTCCGCGTTAGGC 61.146 60.000 4.92 0.00 38.69 3.93
2414 2481 1.296727 GTTAGGCGTTACCCTGCATC 58.703 55.000 0.00 0.00 40.58 3.91
2436 2503 2.251409 TCTAGATGAAGCCAGCATGC 57.749 50.000 10.51 10.51 31.97 4.06
2437 2504 1.487558 TCTAGATGAAGCCAGCATGCA 59.512 47.619 21.98 0.00 31.97 3.96
2438 2505 1.874231 CTAGATGAAGCCAGCATGCAG 59.126 52.381 21.98 12.49 31.97 4.41
2439 2506 0.752009 AGATGAAGCCAGCATGCAGG 60.752 55.000 23.95 23.95 31.97 4.85
2448 2515 1.471684 CCAGCATGCAGGAGAAGAAAC 59.528 52.381 23.96 0.00 31.97 2.78
2451 2518 2.157738 GCATGCAGGAGAAGAAACAGT 58.842 47.619 14.21 0.00 0.00 3.55
2462 2529 5.263968 AGAAGAAACAGTGAGACGAAGAA 57.736 39.130 0.00 0.00 0.00 2.52
2464 2531 6.284459 AGAAGAAACAGTGAGACGAAGAATT 58.716 36.000 0.00 0.00 0.00 2.17
2486 2553 1.985473 AGATGCTTGGAACTGCAACA 58.015 45.000 0.00 0.00 40.89 3.33
2490 2557 1.610038 TGCTTGGAACTGCAACAGATG 59.390 47.619 0.78 0.00 35.92 2.90
2521 2589 8.542953 TGATTAATTTGTTCTCTTGATCGATCG 58.457 33.333 20.03 9.36 0.00 3.69
2526 2594 4.602006 TGTTCTCTTGATCGATCGACATC 58.398 43.478 22.06 15.72 0.00 3.06
2535 2603 5.461526 TGATCGATCGACATCTTGGTTATC 58.538 41.667 22.06 9.85 0.00 1.75
2536 2604 5.241728 TGATCGATCGACATCTTGGTTATCT 59.758 40.000 22.06 0.00 0.00 1.98
2591 2659 5.283457 ACTCCTGTGGTAGAATAGAATGC 57.717 43.478 0.00 0.00 0.00 3.56
2609 2677 1.901650 GCTGCGCTGTAGTTGTGGAC 61.902 60.000 16.05 0.00 0.00 4.02
2611 2679 0.963225 TGCGCTGTAGTTGTGGACTA 59.037 50.000 9.73 0.00 39.86 2.59
2644 2712 6.183360 TGTGTTGAGTTAATTCACATGCCTTT 60.183 34.615 0.00 0.00 34.74 3.11
2648 2716 7.517614 TGAGTTAATTCACATGCCTTTTGTA 57.482 32.000 0.00 0.00 0.00 2.41
2673 2746 2.488153 GTGGTTGGGTGCTGATTAGTTC 59.512 50.000 0.00 0.00 0.00 3.01
2676 2749 2.812011 GTTGGGTGCTGATTAGTTCGTT 59.188 45.455 0.00 0.00 0.00 3.85
2683 2756 5.393243 GGTGCTGATTAGTTCGTTAGTCTCT 60.393 44.000 0.00 0.00 0.00 3.10
2700 2773 3.195825 GTCTCTAGCTTTCTGGTTAGGCA 59.804 47.826 0.00 0.00 0.00 4.75
2701 2774 3.449018 TCTCTAGCTTTCTGGTTAGGCAG 59.551 47.826 0.00 0.00 0.00 4.85
2702 2775 2.093447 TCTAGCTTTCTGGTTAGGCAGC 60.093 50.000 0.00 0.00 32.57 5.25
2703 2776 0.695347 AGCTTTCTGGTTAGGCAGCT 59.305 50.000 0.00 0.00 35.88 4.24
2704 2777 0.807496 GCTTTCTGGTTAGGCAGCTG 59.193 55.000 10.11 10.11 0.00 4.24
2705 2778 0.807496 CTTTCTGGTTAGGCAGCTGC 59.193 55.000 30.88 30.88 41.14 5.25
2730 2803 4.081476 GCTGCCATTTAAGATGGTTCCTTT 60.081 41.667 14.31 0.00 41.17 3.11
2736 2809 7.441017 CCATTTAAGATGGTTCCTTTTGTTGA 58.559 34.615 7.94 0.00 34.56 3.18
2739 2812 7.595819 TTAAGATGGTTCCTTTTGTTGATGT 57.404 32.000 0.00 0.00 0.00 3.06
2740 2813 5.712152 AGATGGTTCCTTTTGTTGATGTC 57.288 39.130 0.00 0.00 0.00 3.06
2741 2814 5.388654 AGATGGTTCCTTTTGTTGATGTCT 58.611 37.500 0.00 0.00 0.00 3.41
2742 2815 4.916983 TGGTTCCTTTTGTTGATGTCTG 57.083 40.909 0.00 0.00 0.00 3.51
2746 2819 3.554934 TCCTTTTGTTGATGTCTGCTGT 58.445 40.909 0.00 0.00 0.00 4.40
2747 2820 3.316029 TCCTTTTGTTGATGTCTGCTGTG 59.684 43.478 0.00 0.00 0.00 3.66
2748 2821 2.780065 TTTGTTGATGTCTGCTGTGC 57.220 45.000 0.00 0.00 0.00 4.57
2751 2824 1.202675 TGTTGATGTCTGCTGTGCTGA 60.203 47.619 0.00 0.00 34.32 4.26
2757 2830 1.006922 TCTGCTGTGCTGACTGTCG 60.007 57.895 2.98 0.00 31.90 4.35
2758 2831 1.006922 CTGCTGTGCTGACTGTCGA 60.007 57.895 2.98 0.00 0.00 4.20
2759 2832 1.006922 TGCTGTGCTGACTGTCGAG 60.007 57.895 2.98 3.45 0.00 4.04
2760 2833 1.735920 GCTGTGCTGACTGTCGAGG 60.736 63.158 2.98 0.00 0.00 4.63
2761 2834 1.735920 CTGTGCTGACTGTCGAGGC 60.736 63.158 2.98 8.08 0.00 4.70
2762 2835 2.152297 CTGTGCTGACTGTCGAGGCT 62.152 60.000 16.62 0.00 0.00 4.58
2763 2836 1.735920 GTGCTGACTGTCGAGGCTG 60.736 63.158 16.62 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.471684 GACAAGATCCTTGCTGCCAAG 59.528 52.381 6.61 1.09 46.38 3.61
9 10 1.074405 AGACAAGATCCTTGCTGCCAA 59.926 47.619 6.61 0.00 0.00 4.52
10 11 0.694771 AGACAAGATCCTTGCTGCCA 59.305 50.000 6.61 0.00 0.00 4.92
11 12 2.698855 TAGACAAGATCCTTGCTGCC 57.301 50.000 6.61 0.00 0.00 4.85
12 13 2.290093 GCATAGACAAGATCCTTGCTGC 59.710 50.000 6.61 0.00 34.41 5.25
13 14 2.877168 GGCATAGACAAGATCCTTGCTG 59.123 50.000 6.61 2.03 36.44 4.41
14 15 2.484417 CGGCATAGACAAGATCCTTGCT 60.484 50.000 6.61 7.47 36.44 3.91
15 16 1.869767 CGGCATAGACAAGATCCTTGC 59.130 52.381 6.61 0.99 35.79 4.01
16 17 2.868583 CACGGCATAGACAAGATCCTTG 59.131 50.000 5.26 5.26 0.00 3.61
17 18 2.158900 CCACGGCATAGACAAGATCCTT 60.159 50.000 0.00 0.00 0.00 3.36
18 19 1.414181 CCACGGCATAGACAAGATCCT 59.586 52.381 0.00 0.00 0.00 3.24
19 20 1.412710 TCCACGGCATAGACAAGATCC 59.587 52.381 0.00 0.00 0.00 3.36
20 21 2.890808 TCCACGGCATAGACAAGATC 57.109 50.000 0.00 0.00 0.00 2.75
21 22 2.808202 GCATCCACGGCATAGACAAGAT 60.808 50.000 0.00 0.00 0.00 2.40
22 23 1.473257 GCATCCACGGCATAGACAAGA 60.473 52.381 0.00 0.00 0.00 3.02
23 24 0.940126 GCATCCACGGCATAGACAAG 59.060 55.000 0.00 0.00 0.00 3.16
24 25 0.251634 TGCATCCACGGCATAGACAA 59.748 50.000 0.00 0.00 36.11 3.18
25 26 0.251634 TTGCATCCACGGCATAGACA 59.748 50.000 0.00 0.00 41.58 3.41
26 27 1.064060 GTTTGCATCCACGGCATAGAC 59.936 52.381 0.00 0.00 41.58 2.59
27 28 1.378531 GTTTGCATCCACGGCATAGA 58.621 50.000 0.00 0.00 41.58 1.98
28 29 0.381801 GGTTTGCATCCACGGCATAG 59.618 55.000 0.00 0.00 41.58 2.23
29 30 0.034574 AGGTTTGCATCCACGGCATA 60.035 50.000 10.40 0.00 41.58 3.14
30 31 1.304381 AGGTTTGCATCCACGGCAT 60.304 52.632 10.40 0.00 41.58 4.40
31 32 1.971167 GAGGTTTGCATCCACGGCA 60.971 57.895 10.40 0.00 40.00 5.69
32 33 1.926511 CTGAGGTTTGCATCCACGGC 61.927 60.000 10.40 0.00 0.00 5.68
33 34 1.308069 CCTGAGGTTTGCATCCACGG 61.308 60.000 10.40 8.80 0.00 4.94
34 35 1.308069 CCCTGAGGTTTGCATCCACG 61.308 60.000 10.40 0.00 0.00 4.94
35 36 0.038166 TCCCTGAGGTTTGCATCCAC 59.962 55.000 10.40 5.36 0.00 4.02
36 37 0.329261 CTCCCTGAGGTTTGCATCCA 59.671 55.000 10.40 0.00 0.00 3.41
37 38 0.620556 TCTCCCTGAGGTTTGCATCC 59.379 55.000 0.00 0.00 0.00 3.51
38 39 2.295885 CATCTCCCTGAGGTTTGCATC 58.704 52.381 0.00 0.00 0.00 3.91
39 40 1.637553 ACATCTCCCTGAGGTTTGCAT 59.362 47.619 0.00 0.00 36.11 3.96
40 41 1.067295 ACATCTCCCTGAGGTTTGCA 58.933 50.000 0.00 0.00 36.11 4.08
41 42 2.206576 AACATCTCCCTGAGGTTTGC 57.793 50.000 0.00 0.00 45.94 3.68
42 43 4.508662 GAGTAACATCTCCCTGAGGTTTG 58.491 47.826 0.00 0.00 45.94 2.93
43 44 3.519913 GGAGTAACATCTCCCTGAGGTTT 59.480 47.826 0.00 0.00 45.94 3.27
45 46 2.753247 GGAGTAACATCTCCCTGAGGT 58.247 52.381 0.00 0.00 45.84 3.85
53 54 1.204941 ACACCGCTGGAGTAACATCTC 59.795 52.381 1.50 0.00 0.00 2.75
54 55 1.267121 ACACCGCTGGAGTAACATCT 58.733 50.000 1.50 0.00 0.00 2.90
55 56 2.953466 TACACCGCTGGAGTAACATC 57.047 50.000 1.50 0.00 0.00 3.06
56 57 3.906720 AATACACCGCTGGAGTAACAT 57.093 42.857 8.39 0.00 32.99 2.71
57 58 3.592059 GAAATACACCGCTGGAGTAACA 58.408 45.455 8.39 0.00 32.99 2.41
58 59 2.934553 GGAAATACACCGCTGGAGTAAC 59.065 50.000 8.39 4.87 32.99 2.50
59 60 2.093341 GGGAAATACACCGCTGGAGTAA 60.093 50.000 8.39 0.00 32.99 2.24
60 61 1.483415 GGGAAATACACCGCTGGAGTA 59.517 52.381 7.17 7.17 33.70 2.59
61 62 0.252197 GGGAAATACACCGCTGGAGT 59.748 55.000 1.50 2.67 0.00 3.85
62 63 0.810031 CGGGAAATACACCGCTGGAG 60.810 60.000 1.50 0.00 43.96 3.86
63 64 1.219664 CGGGAAATACACCGCTGGA 59.780 57.895 1.50 0.00 43.96 3.86
64 65 3.808036 CGGGAAATACACCGCTGG 58.192 61.111 0.00 0.00 43.96 4.85
69 70 1.947456 GATTGAGCCGGGAAATACACC 59.053 52.381 2.18 0.00 0.00 4.16
70 71 2.639065 TGATTGAGCCGGGAAATACAC 58.361 47.619 2.18 0.00 0.00 2.90
71 72 3.213506 CATGATTGAGCCGGGAAATACA 58.786 45.455 2.18 0.00 0.00 2.29
72 73 3.214328 ACATGATTGAGCCGGGAAATAC 58.786 45.455 2.18 0.00 0.00 1.89
73 74 3.476552 GACATGATTGAGCCGGGAAATA 58.523 45.455 2.18 0.00 0.00 1.40
74 75 2.301346 GACATGATTGAGCCGGGAAAT 58.699 47.619 2.18 0.00 0.00 2.17
75 76 1.750193 GACATGATTGAGCCGGGAAA 58.250 50.000 2.18 0.00 0.00 3.13
76 77 0.461870 CGACATGATTGAGCCGGGAA 60.462 55.000 2.18 0.00 0.00 3.97
77 78 1.143838 CGACATGATTGAGCCGGGA 59.856 57.895 2.18 0.00 0.00 5.14
78 79 0.877649 CTCGACATGATTGAGCCGGG 60.878 60.000 2.18 0.00 31.79 5.73
79 80 0.877649 CCTCGACATGATTGAGCCGG 60.878 60.000 0.00 0.00 37.50 6.13
80 81 0.103026 TCCTCGACATGATTGAGCCG 59.897 55.000 0.00 0.00 37.50 5.52
81 82 1.137872 AGTCCTCGACATGATTGAGCC 59.862 52.381 0.00 0.00 37.50 4.70
82 83 2.200067 CAGTCCTCGACATGATTGAGC 58.800 52.381 0.00 0.00 37.50 4.26
83 84 2.428530 TCCAGTCCTCGACATGATTGAG 59.571 50.000 0.00 3.14 38.46 3.02
84 85 2.428530 CTCCAGTCCTCGACATGATTGA 59.571 50.000 0.00 0.00 34.60 2.57
85 86 2.819115 CTCCAGTCCTCGACATGATTG 58.181 52.381 0.00 0.00 34.60 2.67
86 87 1.137872 GCTCCAGTCCTCGACATGATT 59.862 52.381 0.00 0.00 34.60 2.57
87 88 0.749649 GCTCCAGTCCTCGACATGAT 59.250 55.000 0.00 0.00 34.60 2.45
88 89 1.657751 CGCTCCAGTCCTCGACATGA 61.658 60.000 0.00 0.00 34.60 3.07
89 90 1.226802 CGCTCCAGTCCTCGACATG 60.227 63.158 0.00 0.00 34.60 3.21
90 91 1.378646 TCGCTCCAGTCCTCGACAT 60.379 57.895 0.00 0.00 34.60 3.06
91 92 2.033602 TCGCTCCAGTCCTCGACA 59.966 61.111 0.00 0.00 34.60 4.35
92 93 2.486042 GTCGCTCCAGTCCTCGAC 59.514 66.667 0.00 0.00 43.23 4.20
93 94 2.750637 GGTCGCTCCAGTCCTCGA 60.751 66.667 0.00 0.00 35.97 4.04
94 95 3.062466 TGGTCGCTCCAGTCCTCG 61.062 66.667 0.00 0.00 41.93 4.63
102 103 1.880027 AGTTGTTCAAATGGTCGCTCC 59.120 47.619 0.00 0.00 0.00 4.70
103 104 3.243068 ACAAGTTGTTCAAATGGTCGCTC 60.243 43.478 1.64 0.00 0.00 5.03
104 105 2.687935 ACAAGTTGTTCAAATGGTCGCT 59.312 40.909 1.64 0.00 0.00 4.93
105 106 3.078594 ACAAGTTGTTCAAATGGTCGC 57.921 42.857 1.64 0.00 0.00 5.19
106 107 5.454232 GTGTAACAAGTTGTTCAAATGGTCG 59.546 40.000 24.06 0.00 40.22 4.79
107 108 5.746721 GGTGTAACAAGTTGTTCAAATGGTC 59.253 40.000 24.06 9.19 40.22 4.02
108 109 5.420739 AGGTGTAACAAGTTGTTCAAATGGT 59.579 36.000 24.06 1.11 40.22 3.55
109 110 5.901552 AGGTGTAACAAGTTGTTCAAATGG 58.098 37.500 24.06 0.00 40.22 3.16
110 111 7.257722 AGAAGGTGTAACAAGTTGTTCAAATG 58.742 34.615 24.06 0.00 40.22 2.32
111 112 7.404671 AGAAGGTGTAACAAGTTGTTCAAAT 57.595 32.000 24.06 11.01 40.22 2.32
112 113 6.827586 AGAAGGTGTAACAAGTTGTTCAAA 57.172 33.333 24.06 8.91 40.22 2.69
113 114 6.431543 TCAAGAAGGTGTAACAAGTTGTTCAA 59.568 34.615 24.06 11.34 40.22 2.69
114 115 5.941058 TCAAGAAGGTGTAACAAGTTGTTCA 59.059 36.000 24.06 17.80 40.22 3.18
115 116 6.315393 TCTCAAGAAGGTGTAACAAGTTGTTC 59.685 38.462 24.06 15.67 40.22 3.18
116 117 6.177610 TCTCAAGAAGGTGTAACAAGTTGTT 58.822 36.000 23.85 23.85 43.88 2.83
117 118 5.741011 TCTCAAGAAGGTGTAACAAGTTGT 58.259 37.500 1.64 1.64 39.98 3.32
118 119 6.677781 TTCTCAAGAAGGTGTAACAAGTTG 57.322 37.500 0.00 0.00 39.98 3.16
119 120 6.927294 CTTCTCAAGAAGGTGTAACAAGTT 57.073 37.500 11.23 0.00 45.79 2.66
132 133 1.048601 ACTCCACGGCTTCTCAAGAA 58.951 50.000 0.00 0.00 0.00 2.52
133 134 1.048601 AACTCCACGGCTTCTCAAGA 58.951 50.000 0.00 0.00 0.00 3.02
134 135 1.532868 CAAACTCCACGGCTTCTCAAG 59.467 52.381 0.00 0.00 0.00 3.02
135 136 1.134220 ACAAACTCCACGGCTTCTCAA 60.134 47.619 0.00 0.00 0.00 3.02
136 137 0.468226 ACAAACTCCACGGCTTCTCA 59.532 50.000 0.00 0.00 0.00 3.27
137 138 2.450609 TACAAACTCCACGGCTTCTC 57.549 50.000 0.00 0.00 0.00 2.87
138 139 3.074412 CAATACAAACTCCACGGCTTCT 58.926 45.455 0.00 0.00 0.00 2.85
139 140 2.414161 GCAATACAAACTCCACGGCTTC 60.414 50.000 0.00 0.00 0.00 3.86
140 141 1.539827 GCAATACAAACTCCACGGCTT 59.460 47.619 0.00 0.00 0.00 4.35
141 142 1.165270 GCAATACAAACTCCACGGCT 58.835 50.000 0.00 0.00 0.00 5.52
142 143 1.130561 GAGCAATACAAACTCCACGGC 59.869 52.381 0.00 0.00 0.00 5.68
143 144 1.393539 CGAGCAATACAAACTCCACGG 59.606 52.381 0.00 0.00 0.00 4.94
144 145 2.066262 ACGAGCAATACAAACTCCACG 58.934 47.619 0.00 0.00 0.00 4.94
145 146 3.370061 GGTACGAGCAATACAAACTCCAC 59.630 47.826 0.00 0.00 0.00 4.02
146 147 3.592059 GGTACGAGCAATACAAACTCCA 58.408 45.455 0.00 0.00 0.00 3.86
168 169 2.359975 CCTTCCTGGCGTCCCAAC 60.360 66.667 0.00 0.00 41.58 3.77
169 170 2.528127 TCCTTCCTGGCGTCCCAA 60.528 61.111 0.00 0.00 41.58 4.12
170 171 2.449967 TACTCCTTCCTGGCGTCCCA 62.450 60.000 0.00 0.00 39.32 4.37
171 172 1.684734 TACTCCTTCCTGGCGTCCC 60.685 63.158 0.00 0.00 35.13 4.46
172 173 1.516423 GTACTCCTTCCTGGCGTCC 59.484 63.158 0.00 0.00 35.13 4.79
173 174 1.139095 CGTACTCCTTCCTGGCGTC 59.861 63.158 0.00 0.00 35.13 5.19
174 175 1.303888 TCGTACTCCTTCCTGGCGT 60.304 57.895 0.00 0.00 37.54 5.68
175 176 1.433879 CTCGTACTCCTTCCTGGCG 59.566 63.158 0.00 0.00 35.26 5.69
176 177 0.683504 TCCTCGTACTCCTTCCTGGC 60.684 60.000 0.00 0.00 35.26 4.85
177 178 1.848652 TTCCTCGTACTCCTTCCTGG 58.151 55.000 0.00 0.00 37.10 4.45
178 179 2.761208 ACATTCCTCGTACTCCTTCCTG 59.239 50.000 0.00 0.00 0.00 3.86
179 180 2.761208 CACATTCCTCGTACTCCTTCCT 59.239 50.000 0.00 0.00 0.00 3.36
180 181 2.758979 TCACATTCCTCGTACTCCTTCC 59.241 50.000 0.00 0.00 0.00 3.46
181 182 4.657436 ATCACATTCCTCGTACTCCTTC 57.343 45.455 0.00 0.00 0.00 3.46
182 183 4.383118 CCAATCACATTCCTCGTACTCCTT 60.383 45.833 0.00 0.00 0.00 3.36
183 184 3.133003 CCAATCACATTCCTCGTACTCCT 59.867 47.826 0.00 0.00 0.00 3.69
184 185 3.458189 CCAATCACATTCCTCGTACTCC 58.542 50.000 0.00 0.00 0.00 3.85
185 186 3.132289 TCCCAATCACATTCCTCGTACTC 59.868 47.826 0.00 0.00 0.00 2.59
186 187 3.104512 TCCCAATCACATTCCTCGTACT 58.895 45.455 0.00 0.00 0.00 2.73
187 188 3.458189 CTCCCAATCACATTCCTCGTAC 58.542 50.000 0.00 0.00 0.00 3.67
188 189 2.158957 GCTCCCAATCACATTCCTCGTA 60.159 50.000 0.00 0.00 0.00 3.43
189 190 1.407437 GCTCCCAATCACATTCCTCGT 60.407 52.381 0.00 0.00 0.00 4.18
190 191 1.134280 AGCTCCCAATCACATTCCTCG 60.134 52.381 0.00 0.00 0.00 4.63
191 192 2.295885 CAGCTCCCAATCACATTCCTC 58.704 52.381 0.00 0.00 0.00 3.71
192 193 1.684248 GCAGCTCCCAATCACATTCCT 60.684 52.381 0.00 0.00 0.00 3.36
193 194 0.743097 GCAGCTCCCAATCACATTCC 59.257 55.000 0.00 0.00 0.00 3.01
194 195 1.404391 CTGCAGCTCCCAATCACATTC 59.596 52.381 0.00 0.00 0.00 2.67
195 196 1.471119 CTGCAGCTCCCAATCACATT 58.529 50.000 0.00 0.00 0.00 2.71
196 197 0.395311 CCTGCAGCTCCCAATCACAT 60.395 55.000 8.66 0.00 0.00 3.21
197 198 1.001764 CCTGCAGCTCCCAATCACA 60.002 57.895 8.66 0.00 0.00 3.58
198 199 1.751927 CCCTGCAGCTCCCAATCAC 60.752 63.158 8.66 0.00 0.00 3.06
199 200 1.924939 TCCCTGCAGCTCCCAATCA 60.925 57.895 8.66 0.00 0.00 2.57
200 201 1.452833 GTCCCTGCAGCTCCCAATC 60.453 63.158 8.66 0.00 0.00 2.67
201 202 2.679716 GTCCCTGCAGCTCCCAAT 59.320 61.111 8.66 0.00 0.00 3.16
202 203 3.650950 GGTCCCTGCAGCTCCCAA 61.651 66.667 8.66 0.00 0.00 4.12
203 204 4.980592 TGGTCCCTGCAGCTCCCA 62.981 66.667 8.66 10.22 0.00 4.37
204 205 4.106925 CTGGTCCCTGCAGCTCCC 62.107 72.222 8.66 7.51 0.00 4.30
205 206 3.005539 TCTGGTCCCTGCAGCTCC 61.006 66.667 8.66 10.42 0.00 4.70
206 207 2.583520 CTCTGGTCCCTGCAGCTC 59.416 66.667 8.66 0.08 0.00 4.09
207 208 3.715097 GCTCTGGTCCCTGCAGCT 61.715 66.667 8.66 0.00 0.00 4.24
208 209 3.678951 GAGCTCTGGTCCCTGCAGC 62.679 68.421 8.66 0.00 0.00 5.25
209 210 2.583520 GAGCTCTGGTCCCTGCAG 59.416 66.667 6.78 6.78 0.00 4.41
210 211 3.385384 CGAGCTCTGGTCCCTGCA 61.385 66.667 12.85 0.00 0.00 4.41
211 212 4.154347 CCGAGCTCTGGTCCCTGC 62.154 72.222 12.85 0.00 0.00 4.85
212 213 3.465403 CCCGAGCTCTGGTCCCTG 61.465 72.222 15.64 0.66 0.00 4.45
213 214 3.670629 CTCCCGAGCTCTGGTCCCT 62.671 68.421 22.01 0.00 0.00 4.20
214 215 3.151022 CTCCCGAGCTCTGGTCCC 61.151 72.222 22.01 0.00 0.00 4.46
215 216 3.151022 CCTCCCGAGCTCTGGTCC 61.151 72.222 22.01 0.00 0.00 4.46
216 217 2.363147 ACCTCCCGAGCTCTGGTC 60.363 66.667 22.01 0.00 0.00 4.02
217 218 2.681778 CACCTCCCGAGCTCTGGT 60.682 66.667 22.01 15.73 0.00 4.00
218 219 3.465403 CCACCTCCCGAGCTCTGG 61.465 72.222 17.59 17.59 0.00 3.86
219 220 3.465403 CCCACCTCCCGAGCTCTG 61.465 72.222 12.85 4.96 0.00 3.35
220 221 3.015332 ATCCCACCTCCCGAGCTCT 62.015 63.158 12.85 0.00 0.00 4.09
221 222 2.444895 ATCCCACCTCCCGAGCTC 60.445 66.667 2.73 2.73 0.00 4.09
222 223 2.765807 CATCCCACCTCCCGAGCT 60.766 66.667 0.00 0.00 0.00 4.09
223 224 2.764128 TCATCCCACCTCCCGAGC 60.764 66.667 0.00 0.00 0.00 5.03
224 225 2.801631 GCTCATCCCACCTCCCGAG 61.802 68.421 0.00 0.00 0.00 4.63
225 226 2.764128 GCTCATCCCACCTCCCGA 60.764 66.667 0.00 0.00 0.00 5.14
226 227 2.599645 CTTGCTCATCCCACCTCCCG 62.600 65.000 0.00 0.00 0.00 5.14
227 228 1.225704 CTTGCTCATCCCACCTCCC 59.774 63.158 0.00 0.00 0.00 4.30
228 229 1.225704 CCTTGCTCATCCCACCTCC 59.774 63.158 0.00 0.00 0.00 4.30
229 230 0.179936 CTCCTTGCTCATCCCACCTC 59.820 60.000 0.00 0.00 0.00 3.85
230 231 1.277580 CCTCCTTGCTCATCCCACCT 61.278 60.000 0.00 0.00 0.00 4.00
231 232 1.225704 CCTCCTTGCTCATCCCACC 59.774 63.158 0.00 0.00 0.00 4.61
232 233 1.225704 CCCTCCTTGCTCATCCCAC 59.774 63.158 0.00 0.00 0.00 4.61
233 234 1.082766 TCCCTCCTTGCTCATCCCA 59.917 57.895 0.00 0.00 0.00 4.37
234 235 1.274703 TGTCCCTCCTTGCTCATCCC 61.275 60.000 0.00 0.00 0.00 3.85
235 236 0.179936 CTGTCCCTCCTTGCTCATCC 59.820 60.000 0.00 0.00 0.00 3.51
236 237 0.908198 ACTGTCCCTCCTTGCTCATC 59.092 55.000 0.00 0.00 0.00 2.92
237 238 0.617413 CACTGTCCCTCCTTGCTCAT 59.383 55.000 0.00 0.00 0.00 2.90
238 239 0.764369 ACACTGTCCCTCCTTGCTCA 60.764 55.000 0.00 0.00 0.00 4.26
239 240 0.036858 GACACTGTCCCTCCTTGCTC 60.037 60.000 0.00 0.00 0.00 4.26
240 241 0.764369 TGACACTGTCCCTCCTTGCT 60.764 55.000 6.72 0.00 0.00 3.91
241 242 0.326264 ATGACACTGTCCCTCCTTGC 59.674 55.000 6.72 0.00 0.00 4.01
242 243 2.867109 AATGACACTGTCCCTCCTTG 57.133 50.000 6.72 0.00 0.00 3.61
243 244 3.306780 CGTAAATGACACTGTCCCTCCTT 60.307 47.826 6.72 0.00 0.00 3.36
244 245 2.233922 CGTAAATGACACTGTCCCTCCT 59.766 50.000 6.72 0.00 0.00 3.69
245 246 2.618053 CGTAAATGACACTGTCCCTCC 58.382 52.381 6.72 0.00 0.00 4.30
246 247 2.232941 TCCGTAAATGACACTGTCCCTC 59.767 50.000 6.72 0.00 0.00 4.30
247 248 2.253610 TCCGTAAATGACACTGTCCCT 58.746 47.619 6.72 0.00 0.00 4.20
248 249 2.754946 TCCGTAAATGACACTGTCCC 57.245 50.000 6.72 0.00 0.00 4.46
249 250 4.935808 AGAATTCCGTAAATGACACTGTCC 59.064 41.667 6.72 0.00 0.00 4.02
250 251 6.481954 AAGAATTCCGTAAATGACACTGTC 57.518 37.500 0.65 1.86 0.00 3.51
251 252 5.120208 CGAAGAATTCCGTAAATGACACTGT 59.880 40.000 0.65 0.00 43.81 3.55
252 253 5.120208 ACGAAGAATTCCGTAAATGACACTG 59.880 40.000 7.82 0.00 43.81 3.66
253 254 5.120208 CACGAAGAATTCCGTAAATGACACT 59.880 40.000 9.04 0.00 43.81 3.55
254 255 5.313623 CACGAAGAATTCCGTAAATGACAC 58.686 41.667 9.04 0.00 43.81 3.67
264 265 2.413837 AGTTGTCCACGAAGAATTCCG 58.586 47.619 0.65 2.02 43.81 4.30
275 276 3.866910 TCAAAGTGTTCGTAGTTGTCCAC 59.133 43.478 0.00 0.00 0.00 4.02
277 278 4.807304 TCTTCAAAGTGTTCGTAGTTGTCC 59.193 41.667 0.00 0.00 0.00 4.02
278 279 5.961395 TCTTCAAAGTGTTCGTAGTTGTC 57.039 39.130 0.00 0.00 0.00 3.18
279 280 6.315393 ACATTCTTCAAAGTGTTCGTAGTTGT 59.685 34.615 0.00 0.00 0.00 3.32
291 292 1.537202 GGCGCAGACATTCTTCAAAGT 59.463 47.619 10.83 0.00 31.66 2.66
295 296 2.390599 GCGGCGCAGACATTCTTCA 61.391 57.895 29.21 0.00 27.25 3.02
298 299 2.816958 CAGCGGCGCAGACATTCT 60.817 61.111 35.02 7.53 27.25 2.40
304 305 3.892740 TTTTAGGCAGCGGCGCAGA 62.893 57.895 35.02 7.44 42.47 4.26
311 312 0.373716 CGGTAAGCTTTTAGGCAGCG 59.626 55.000 3.20 2.64 42.55 5.18
354 355 2.817396 GGAAGCTCTGCTCGCACC 60.817 66.667 0.00 0.00 38.25 5.01
359 360 5.283457 TCTATAAAAGGGAAGCTCTGCTC 57.717 43.478 0.00 0.00 38.25 4.26
393 394 2.604174 CCCAAAGTTTCGAGCGCGT 61.604 57.895 10.30 0.00 38.98 6.01
406 407 3.646715 CGCAGGAGGTCCCCCAAA 61.647 66.667 0.00 0.00 36.42 3.28
553 554 8.689251 TGTACTCTTCGAATTTGTCATAAGAG 57.311 34.615 15.49 15.49 44.38 2.85
679 680 1.078918 CTGCTCCGCCTCATCAACA 60.079 57.895 0.00 0.00 0.00 3.33
704 705 1.439228 GCATCGGCAGCTCACTCTA 59.561 57.895 0.00 0.00 40.72 2.43
820 821 2.759191 AGCACGATCATGTTCGCATAT 58.241 42.857 22.73 6.94 42.82 1.78
836 837 7.033185 TGTAAAAGAAAGAGGAAAACAAGCAC 58.967 34.615 0.00 0.00 0.00 4.40
847 848 5.817816 ACTGTGTCACTGTAAAAGAAAGAGG 59.182 40.000 13.30 0.00 0.00 3.69
861 862 5.163405 ACATTACAAGACTGACTGTGTCACT 60.163 40.000 4.27 0.00 37.67 3.41
902 905 0.608308 GTCCAAGGTGGCCTGTAACC 60.608 60.000 3.32 2.33 37.47 2.85
903 906 0.953960 CGTCCAAGGTGGCCTGTAAC 60.954 60.000 3.32 0.00 37.47 2.50
906 909 4.643387 GCGTCCAAGGTGGCCTGT 62.643 66.667 3.32 0.00 37.47 4.00
911 914 3.530910 AAGTCGGCGTCCAAGGTGG 62.531 63.158 6.85 0.00 39.43 4.61
914 917 2.809601 CGAAGTCGGCGTCCAAGG 60.810 66.667 6.85 0.00 35.37 3.61
916 919 2.196382 CTCTCGAAGTCGGCGTCCAA 62.196 60.000 6.85 0.00 40.29 3.53
999 1002 1.152756 GCTTATCCCCGGGTGCATT 60.153 57.895 21.85 1.14 0.00 3.56
1010 1013 1.847088 AGAGGGGGAACTTGCTTATCC 59.153 52.381 0.00 0.00 0.00 2.59
1220 1223 2.424956 GCACCATTGAACAATCTCTCCC 59.575 50.000 0.00 0.00 0.00 4.30
1246 1249 8.764524 AATGTTCTACTAGTGACTGATCAAAC 57.235 34.615 5.39 0.00 36.31 2.93
1298 1303 2.331809 TCGAGCCGTATCATCGATTG 57.668 50.000 0.00 0.00 40.29 2.67
1308 1313 3.317993 TCAAGATCATCAATCGAGCCGTA 59.682 43.478 0.00 0.00 39.55 4.02
1400 1405 2.359850 GGATGGCGTGGACTTGCA 60.360 61.111 0.00 0.00 0.00 4.08
1602 1607 1.966451 CACTCACTTTGCCCGGGTC 60.966 63.158 24.63 15.35 0.00 4.46
1648 1659 1.333177 TACAGCGGCCCAAATTGTTT 58.667 45.000 0.00 0.00 0.00 2.83
1662 1673 0.445043 CGCCGTTAGGGTTTTACAGC 59.555 55.000 0.00 0.00 38.44 4.40
1671 1682 0.663568 GATGTCGATCGCCGTTAGGG 60.664 60.000 11.09 0.00 39.75 3.53
1672 1683 0.030235 TGATGTCGATCGCCGTTAGG 59.970 55.000 11.09 0.00 39.75 2.69
1679 1691 4.715520 ATAACACAATGATGTCGATCGC 57.284 40.909 11.09 6.41 37.82 4.58
1690 1702 7.356540 TGGAAGAACGTAACAATAACACAATG 58.643 34.615 0.00 0.00 0.00 2.82
1691 1703 7.499321 TGGAAGAACGTAACAATAACACAAT 57.501 32.000 0.00 0.00 0.00 2.71
1693 1705 6.148150 GGATGGAAGAACGTAACAATAACACA 59.852 38.462 0.00 0.00 0.00 3.72
1694 1706 6.540205 GGATGGAAGAACGTAACAATAACAC 58.460 40.000 0.00 0.00 0.00 3.32
1697 1709 4.330620 GCGGATGGAAGAACGTAACAATAA 59.669 41.667 0.00 0.00 0.00 1.40
1698 1710 3.866910 GCGGATGGAAGAACGTAACAATA 59.133 43.478 0.00 0.00 0.00 1.90
1699 1711 2.676342 GCGGATGGAAGAACGTAACAAT 59.324 45.455 0.00 0.00 0.00 2.71
1700 1712 2.070783 GCGGATGGAAGAACGTAACAA 58.929 47.619 0.00 0.00 0.00 2.83
1706 1718 1.298157 TGCTTGCGGATGGAAGAACG 61.298 55.000 0.47 0.00 45.57 3.95
1722 1734 0.323178 CAGGATCCAAAGGCAGTGCT 60.323 55.000 15.82 0.00 0.00 4.40
1745 1757 3.036084 CAACAGCGTCGCCGAGTT 61.036 61.111 14.86 13.56 35.26 3.01
1761 1773 0.108472 CCAGATCGTCTTGCTGCTCA 60.108 55.000 0.00 0.00 0.00 4.26
1783 1795 1.320344 TTGCGTCGGCCACTATCTCT 61.320 55.000 2.24 0.00 38.85 3.10
1789 1801 2.951475 TTTCCTTTGCGTCGGCCACT 62.951 55.000 2.24 0.00 38.85 4.00
1807 1819 2.093235 GCAGTCATAGAAGCACCCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
1822 1834 0.874175 CCTCGTCGTTGTTGCAGTCA 60.874 55.000 0.00 0.00 0.00 3.41
1832 1844 2.049433 CGCAAGGTCCTCGTCGTT 60.049 61.111 0.00 0.00 0.00 3.85
1853 1865 1.735198 CCACGGCGTCACGTATTGT 60.735 57.895 10.85 0.00 46.75 2.71
1855 1867 1.444895 GACCACGGCGTCACGTATT 60.445 57.895 10.85 0.00 46.75 1.89
1861 1873 4.124351 GGATCGACCACGGCGTCA 62.124 66.667 10.85 0.00 40.21 4.35
1878 1890 0.461870 TCCACTTCATTCATCCGGCG 60.462 55.000 0.00 0.00 0.00 6.46
1880 1892 2.009774 GTGTCCACTTCATTCATCCGG 58.990 52.381 0.00 0.00 0.00 5.14
1890 1902 1.141053 AGGTTGTCCAGTGTCCACTTC 59.859 52.381 0.00 0.00 40.20 3.01
1893 1905 1.166531 GCAGGTTGTCCAGTGTCCAC 61.167 60.000 0.00 0.00 35.89 4.02
1894 1906 1.148273 GCAGGTTGTCCAGTGTCCA 59.852 57.895 0.00 0.00 35.89 4.02
1895 1907 0.603975 GAGCAGGTTGTCCAGTGTCC 60.604 60.000 0.00 0.00 35.89 4.02
1896 1908 0.106708 TGAGCAGGTTGTCCAGTGTC 59.893 55.000 0.00 0.00 35.89 3.67
1897 1909 0.546122 TTGAGCAGGTTGTCCAGTGT 59.454 50.000 0.00 0.00 35.89 3.55
1898 1910 0.947244 GTTGAGCAGGTTGTCCAGTG 59.053 55.000 0.00 0.00 35.89 3.66
1899 1911 0.546122 TGTTGAGCAGGTTGTCCAGT 59.454 50.000 0.00 0.00 35.89 4.00
1900 1912 1.538512 CATGTTGAGCAGGTTGTCCAG 59.461 52.381 0.00 0.00 35.89 3.86
1908 1920 1.812235 TGCTGTACATGTTGAGCAGG 58.188 50.000 21.47 6.16 36.54 4.85
1918 1930 3.553096 GCCTATACGAAGCTGCTGTACAT 60.553 47.826 1.35 0.00 0.00 2.29
1920 1932 2.395654 GCCTATACGAAGCTGCTGTAC 58.604 52.381 1.35 0.00 0.00 2.90
1921 1933 1.340248 GGCCTATACGAAGCTGCTGTA 59.660 52.381 1.35 2.23 0.00 2.74
1923 1935 0.941463 CGGCCTATACGAAGCTGCTG 60.941 60.000 1.35 0.00 0.00 4.41
1928 1940 0.317479 ATGGTCGGCCTATACGAAGC 59.683 55.000 7.97 0.00 42.55 3.86
1929 1941 1.611977 TCATGGTCGGCCTATACGAAG 59.388 52.381 7.97 0.00 42.55 3.79
1930 1942 1.694844 TCATGGTCGGCCTATACGAA 58.305 50.000 7.97 0.00 42.55 3.85
1941 1953 2.501261 TCGTACCCTAGATCATGGTCG 58.499 52.381 0.00 8.27 33.55 4.79
1943 1955 4.480115 TCATTCGTACCCTAGATCATGGT 58.520 43.478 0.00 0.49 36.15 3.55
1968 1987 2.092968 ACTTGACAAGCACAAGGACTCA 60.093 45.455 15.24 0.00 45.92 3.41
1969 1988 2.565841 ACTTGACAAGCACAAGGACTC 58.434 47.619 15.24 0.00 45.92 3.36
1971 1990 2.682856 TCAACTTGACAAGCACAAGGAC 59.317 45.455 15.24 0.00 45.92 3.85
1972 1991 2.682856 GTCAACTTGACAAGCACAAGGA 59.317 45.455 15.24 1.69 46.22 3.36
1985 2004 3.354089 AATTGGCTCGTTGTCAACTTG 57.646 42.857 13.67 7.19 43.63 3.16
1990 2009 0.871722 CGGAAATTGGCTCGTTGTCA 59.128 50.000 0.00 0.00 0.00 3.58
1993 2012 2.225491 TCTTTCGGAAATTGGCTCGTTG 59.775 45.455 3.24 0.00 0.00 4.10
1996 2015 2.094417 GTCTCTTTCGGAAATTGGCTCG 59.906 50.000 3.24 0.00 0.00 5.03
1999 2018 3.440173 TGATGTCTCTTTCGGAAATTGGC 59.560 43.478 3.24 2.51 0.00 4.52
2005 2024 4.679106 GCATCTCTGATGTCTCTTTCGGAA 60.679 45.833 8.98 0.00 0.00 4.30
2006 2025 3.181482 GCATCTCTGATGTCTCTTTCGGA 60.181 47.826 8.98 0.00 0.00 4.55
2012 2031 2.369203 CCCATGCATCTCTGATGTCTCT 59.631 50.000 0.00 0.00 0.00 3.10
2013 2032 2.768698 CCCATGCATCTCTGATGTCTC 58.231 52.381 0.00 0.00 0.00 3.36
2014 2033 1.202782 GCCCATGCATCTCTGATGTCT 60.203 52.381 0.00 0.00 37.47 3.41
2015 2034 1.202782 AGCCCATGCATCTCTGATGTC 60.203 52.381 0.00 3.20 41.13 3.06
2016 2035 0.844660 AGCCCATGCATCTCTGATGT 59.155 50.000 0.00 0.00 41.13 3.06
2017 2036 1.982660 AAGCCCATGCATCTCTGATG 58.017 50.000 0.00 3.42 41.13 3.07
2018 2037 3.484407 GTTAAGCCCATGCATCTCTGAT 58.516 45.455 0.00 0.00 41.13 2.90
2019 2038 2.421952 GGTTAAGCCCATGCATCTCTGA 60.422 50.000 0.00 0.00 41.13 3.27
2020 2039 1.952296 GGTTAAGCCCATGCATCTCTG 59.048 52.381 0.00 0.00 41.13 3.35
2021 2040 1.849039 AGGTTAAGCCCATGCATCTCT 59.151 47.619 0.00 0.00 41.13 3.10
2022 2041 1.952296 CAGGTTAAGCCCATGCATCTC 59.048 52.381 0.00 0.00 41.13 2.75
2027 2046 0.532115 CCAACAGGTTAAGCCCATGC 59.468 55.000 0.00 0.00 38.26 4.06
2033 2052 0.250597 ACCGGTCCAACAGGTTAAGC 60.251 55.000 0.00 0.00 44.25 3.09
2039 2058 1.206371 CCTAACTACCGGTCCAACAGG 59.794 57.143 12.40 9.17 39.46 4.00
2050 2069 5.868258 GCTGAGACTTACAAACCTAACTACC 59.132 44.000 0.00 0.00 0.00 3.18
2055 2074 5.307196 AGGAAGCTGAGACTTACAAACCTAA 59.693 40.000 0.00 0.00 32.46 2.69
2057 2076 3.648545 AGGAAGCTGAGACTTACAAACCT 59.351 43.478 0.00 0.00 32.46 3.50
2058 2077 4.009370 AGGAAGCTGAGACTTACAAACC 57.991 45.455 0.00 0.00 32.46 3.27
2059 2078 4.452795 GGAAGGAAGCTGAGACTTACAAAC 59.547 45.833 0.00 0.00 32.46 2.93
2060 2079 4.505039 GGGAAGGAAGCTGAGACTTACAAA 60.505 45.833 0.00 0.00 32.46 2.83
2061 2080 3.008049 GGGAAGGAAGCTGAGACTTACAA 59.992 47.826 0.00 0.00 32.46 2.41
2062 2081 2.567615 GGGAAGGAAGCTGAGACTTACA 59.432 50.000 0.00 0.00 32.46 2.41
2063 2082 2.835156 AGGGAAGGAAGCTGAGACTTAC 59.165 50.000 0.00 0.00 0.00 2.34
2064 2083 2.834549 CAGGGAAGGAAGCTGAGACTTA 59.165 50.000 0.00 0.00 0.00 2.24
2065 2084 1.627834 CAGGGAAGGAAGCTGAGACTT 59.372 52.381 0.00 0.00 0.00 3.01
2066 2085 1.274712 CAGGGAAGGAAGCTGAGACT 58.725 55.000 0.00 0.00 0.00 3.24
2067 2086 0.392327 GCAGGGAAGGAAGCTGAGAC 60.392 60.000 0.00 0.00 0.00 3.36
2068 2087 0.837691 TGCAGGGAAGGAAGCTGAGA 60.838 55.000 0.00 0.00 0.00 3.27
2069 2088 0.392729 CTGCAGGGAAGGAAGCTGAG 60.393 60.000 5.57 0.00 0.00 3.35
2070 2089 1.681666 CTGCAGGGAAGGAAGCTGA 59.318 57.895 5.57 0.00 0.00 4.26
2071 2090 1.378250 CCTGCAGGGAAGGAAGCTG 60.378 63.158 26.14 0.00 36.91 4.24
2072 2091 1.539869 TCCTGCAGGGAAGGAAGCT 60.540 57.895 32.23 0.00 40.95 3.74
2073 2092 3.081554 TCCTGCAGGGAAGGAAGC 58.918 61.111 32.23 0.00 40.95 3.86
2096 2115 8.787852 GTTCATAATTTCATATCCAGTTCCTCC 58.212 37.037 0.00 0.00 0.00 4.30
2099 2118 7.444183 TCCGTTCATAATTTCATATCCAGTTCC 59.556 37.037 0.00 0.00 0.00 3.62
2105 2124 7.023575 GCATGTCCGTTCATAATTTCATATCC 58.976 38.462 0.00 0.00 0.00 2.59
2106 2125 7.023575 GGCATGTCCGTTCATAATTTCATATC 58.976 38.462 0.00 0.00 0.00 1.63
2117 2136 0.908910 TACCAGGCATGTCCGTTCAT 59.091 50.000 0.00 0.00 40.77 2.57
2118 2137 0.249120 CTACCAGGCATGTCCGTTCA 59.751 55.000 0.00 0.00 40.77 3.18
2119 2138 0.462047 CCTACCAGGCATGTCCGTTC 60.462 60.000 0.00 0.00 40.77 3.95
2120 2139 1.602237 CCTACCAGGCATGTCCGTT 59.398 57.895 0.00 0.00 40.77 4.44
2121 2140 2.367202 CCCTACCAGGCATGTCCGT 61.367 63.158 0.00 0.00 40.77 4.69
2122 2141 1.410850 ATCCCTACCAGGCATGTCCG 61.411 60.000 0.00 0.00 40.77 4.79
2123 2142 0.109342 CATCCCTACCAGGCATGTCC 59.891 60.000 0.00 0.00 32.73 4.02
2124 2143 0.536006 GCATCCCTACCAGGCATGTC 60.536 60.000 0.00 0.00 32.73 3.06
2125 2144 1.533711 GCATCCCTACCAGGCATGT 59.466 57.895 0.00 0.00 32.73 3.21
2126 2145 1.598962 CGCATCCCTACCAGGCATG 60.599 63.158 0.00 0.00 32.73 4.06
2130 2149 1.153168 CAACCGCATCCCTACCAGG 60.153 63.158 0.00 0.00 34.30 4.45
2142 2161 1.925946 GCACAATTGACAGACAACCGC 60.926 52.381 13.59 0.00 41.52 5.68
2150 2169 1.443194 GCTGCCGCACAATTGACAG 60.443 57.895 13.59 11.62 35.78 3.51
2159 2178 2.512515 CTCCTAAGGCTGCCGCAC 60.513 66.667 13.96 0.00 38.10 5.34
2160 2179 3.785859 CCTCCTAAGGCTGCCGCA 61.786 66.667 13.96 3.94 35.37 5.69
2168 2187 1.450312 CGCAGTTGGCCTCCTAAGG 60.450 63.158 3.32 0.00 46.44 2.69
2185 2212 1.472480 AGAACATCATTTTTCCCCGCG 59.528 47.619 0.00 0.00 0.00 6.46
2186 2213 2.491693 TCAGAACATCATTTTTCCCCGC 59.508 45.455 0.00 0.00 0.00 6.13
2187 2214 4.782019 TTCAGAACATCATTTTTCCCCG 57.218 40.909 0.00 0.00 0.00 5.73
2188 2215 4.931601 GCTTTCAGAACATCATTTTTCCCC 59.068 41.667 0.00 0.00 0.00 4.81
2189 2216 4.931601 GGCTTTCAGAACATCATTTTTCCC 59.068 41.667 0.00 0.00 0.00 3.97
2191 2218 6.925165 TCAAGGCTTTCAGAACATCATTTTTC 59.075 34.615 0.00 0.00 0.00 2.29
2192 2219 6.819284 TCAAGGCTTTCAGAACATCATTTTT 58.181 32.000 0.00 0.00 0.00 1.94
2193 2220 6.409524 TCAAGGCTTTCAGAACATCATTTT 57.590 33.333 0.00 0.00 0.00 1.82
2194 2221 6.600882 ATCAAGGCTTTCAGAACATCATTT 57.399 33.333 0.00 0.00 0.00 2.32
2195 2222 6.096001 GGTATCAAGGCTTTCAGAACATCATT 59.904 38.462 0.00 0.00 0.00 2.57
2196 2223 5.591877 GGTATCAAGGCTTTCAGAACATCAT 59.408 40.000 0.00 0.00 0.00 2.45
2198 2225 4.336713 GGGTATCAAGGCTTTCAGAACATC 59.663 45.833 0.00 0.00 0.00 3.06
2199 2226 4.273318 GGGTATCAAGGCTTTCAGAACAT 58.727 43.478 0.00 0.00 0.00 2.71
2200 2227 3.686016 GGGTATCAAGGCTTTCAGAACA 58.314 45.455 0.00 0.00 0.00 3.18
2201 2228 2.678336 CGGGTATCAAGGCTTTCAGAAC 59.322 50.000 0.00 0.00 0.00 3.01
2202 2229 2.304761 ACGGGTATCAAGGCTTTCAGAA 59.695 45.455 0.00 0.00 0.00 3.02
2203 2230 1.906574 ACGGGTATCAAGGCTTTCAGA 59.093 47.619 0.00 0.00 0.00 3.27
2207 2256 2.579410 ACAACGGGTATCAAGGCTTT 57.421 45.000 0.00 0.00 0.00 3.51
2217 2266 1.203087 TCCAGGAGAGAACAACGGGTA 60.203 52.381 0.00 0.00 0.00 3.69
2222 2281 5.916661 TGTAGTATCCAGGAGAGAACAAC 57.083 43.478 0.00 0.00 0.00 3.32
2261 2328 9.946165 CCTCTTTAACAAAATCGAAAGTAACTT 57.054 29.630 0.00 0.00 32.05 2.66
2262 2329 9.117183 ACCTCTTTAACAAAATCGAAAGTAACT 57.883 29.630 0.00 0.00 32.05 2.24
2263 2330 9.726232 AACCTCTTTAACAAAATCGAAAGTAAC 57.274 29.630 0.00 0.00 32.05 2.50
2266 2333 7.919091 GGAAACCTCTTTAACAAAATCGAAAGT 59.081 33.333 0.00 0.00 32.05 2.66
2267 2334 8.282124 GGAAACCTCTTTAACAAAATCGAAAG 57.718 34.615 0.00 0.00 0.00 2.62
2288 2355 7.285401 GCTAATAGTTGAAATCAGATGGGGAAA 59.715 37.037 0.00 0.00 0.00 3.13
2291 2358 6.064060 TGCTAATAGTTGAAATCAGATGGGG 58.936 40.000 0.00 0.00 0.00 4.96
2295 2362 7.201767 GCTGGTTGCTAATAGTTGAAATCAGAT 60.202 37.037 9.42 0.00 38.95 2.90
2302 2369 3.440173 GCTGCTGGTTGCTAATAGTTGAA 59.560 43.478 0.00 0.00 43.37 2.69
2312 2379 2.516930 AACGTGCTGCTGGTTGCT 60.517 55.556 0.00 0.00 43.37 3.91
2326 2393 1.923204 GAGCACTACAGAGCATGAACG 59.077 52.381 0.00 0.00 34.00 3.95
2327 2394 3.119173 AGAGAGCACTACAGAGCATGAAC 60.119 47.826 0.00 0.00 34.00 3.18
2329 2396 2.687425 GAGAGAGCACTACAGAGCATGA 59.313 50.000 0.00 0.00 34.00 3.07
2330 2397 2.426381 TGAGAGAGCACTACAGAGCATG 59.574 50.000 1.55 0.00 34.00 4.06
2331 2398 2.689471 CTGAGAGAGCACTACAGAGCAT 59.311 50.000 10.63 0.00 34.82 3.79
2332 2399 2.090760 CTGAGAGAGCACTACAGAGCA 58.909 52.381 10.63 0.00 34.82 4.26
2333 2400 2.364632 TCTGAGAGAGCACTACAGAGC 58.635 52.381 13.43 0.00 36.00 4.09
2334 2401 4.734402 GCAATCTGAGAGAGCACTACAGAG 60.734 50.000 19.03 11.57 40.19 3.35
2335 2402 3.130164 GCAATCTGAGAGAGCACTACAGA 59.870 47.826 17.50 17.50 40.66 3.41
2336 2403 3.130869 AGCAATCTGAGAGAGCACTACAG 59.869 47.826 10.81 10.10 34.48 2.74
2337 2404 3.095332 AGCAATCTGAGAGAGCACTACA 58.905 45.455 10.81 0.00 0.00 2.74
2338 2405 3.119173 ACAGCAATCTGAGAGAGCACTAC 60.119 47.826 10.81 0.00 42.95 2.73
2348 2415 4.275196 CACCAATATCCACAGCAATCTGAG 59.725 45.833 0.00 0.00 42.95 3.35
2353 2420 2.034124 GCCACCAATATCCACAGCAAT 58.966 47.619 0.00 0.00 0.00 3.56
2356 2423 0.395586 TGGCCACCAATATCCACAGC 60.396 55.000 0.00 0.00 0.00 4.40
2359 2426 3.788227 TCTATGGCCACCAATATCCAC 57.212 47.619 8.16 0.00 36.95 4.02
2361 2428 3.197766 TCGATCTATGGCCACCAATATCC 59.802 47.826 8.16 0.00 36.95 2.59
2365 2432 2.373169 ACATCGATCTATGGCCACCAAT 59.627 45.455 8.16 0.28 36.95 3.16
2371 2438 2.353208 GGACTCACATCGATCTATGGCC 60.353 54.545 11.54 0.00 0.00 5.36
2377 2444 1.356979 CGCGGACTCACATCGATCT 59.643 57.895 0.00 0.00 0.00 2.75
2381 2448 0.866061 CCTAACGCGGACTCACATCG 60.866 60.000 12.47 0.00 0.00 3.84
2382 2449 1.146358 GCCTAACGCGGACTCACATC 61.146 60.000 12.47 0.00 0.00 3.06
2384 2451 2.260434 GCCTAACGCGGACTCACA 59.740 61.111 12.47 0.00 0.00 3.58
2396 2463 0.179094 CGATGCAGGGTAACGCCTAA 60.179 55.000 0.00 0.00 37.43 2.69
2397 2464 1.038681 TCGATGCAGGGTAACGCCTA 61.039 55.000 0.00 0.00 37.43 3.93
2399 2466 1.222115 GATCGATGCAGGGTAACGCC 61.222 60.000 0.54 0.00 37.60 5.68
2400 2467 0.249489 AGATCGATGCAGGGTAACGC 60.249 55.000 0.54 0.00 37.60 4.84
2401 2468 2.552743 TCTAGATCGATGCAGGGTAACG 59.447 50.000 0.54 0.00 37.60 3.18
2402 2469 4.218635 TCATCTAGATCGATGCAGGGTAAC 59.781 45.833 0.54 0.00 40.41 2.50
2403 2470 4.407365 TCATCTAGATCGATGCAGGGTAA 58.593 43.478 0.54 0.00 40.41 2.85
2404 2471 4.034285 TCATCTAGATCGATGCAGGGTA 57.966 45.455 0.54 0.00 40.41 3.69
2405 2472 2.881734 TCATCTAGATCGATGCAGGGT 58.118 47.619 0.54 0.00 40.41 4.34
2406 2473 3.847542 CTTCATCTAGATCGATGCAGGG 58.152 50.000 0.54 0.00 40.41 4.45
2407 2474 3.252400 GCTTCATCTAGATCGATGCAGG 58.748 50.000 23.13 6.97 40.41 4.85
2408 2475 3.252400 GGCTTCATCTAGATCGATGCAG 58.748 50.000 25.97 12.62 40.41 4.41
2414 2481 2.808523 TGCTGGCTTCATCTAGATCG 57.191 50.000 1.03 0.00 0.00 3.69
2436 2503 3.004839 TCGTCTCACTGTTTCTTCTCCTG 59.995 47.826 0.00 0.00 0.00 3.86
2437 2504 3.223435 TCGTCTCACTGTTTCTTCTCCT 58.777 45.455 0.00 0.00 0.00 3.69
2438 2505 3.644884 TCGTCTCACTGTTTCTTCTCC 57.355 47.619 0.00 0.00 0.00 3.71
2439 2506 4.861210 TCTTCGTCTCACTGTTTCTTCTC 58.139 43.478 0.00 0.00 0.00 2.87
2448 2515 5.445673 GCATCTTCAATTCTTCGTCTCACTG 60.446 44.000 0.00 0.00 0.00 3.66
2451 2518 4.825422 AGCATCTTCAATTCTTCGTCTCA 58.175 39.130 0.00 0.00 0.00 3.27
2462 2529 3.159472 TGCAGTTCCAAGCATCTTCAAT 58.841 40.909 0.00 0.00 35.51 2.57
2464 2531 2.275134 TGCAGTTCCAAGCATCTTCA 57.725 45.000 0.00 0.00 35.51 3.02
2486 2553 9.525826 AAGAGAACAAATTAATCAACTCCATCT 57.474 29.630 0.00 0.00 0.00 2.90
2490 2557 9.780413 GATCAAGAGAACAAATTAATCAACTCC 57.220 33.333 0.00 0.00 0.00 3.85
2521 2589 4.192317 GGTGACCAGATAACCAAGATGTC 58.808 47.826 0.00 0.00 33.94 3.06
2526 2594 2.711542 GGTGGTGACCAGATAACCAAG 58.288 52.381 3.58 0.00 45.26 3.61
2535 2603 2.111043 AAGTGCGGTGGTGACCAG 59.889 61.111 3.58 0.00 43.33 4.00
2536 2604 2.203139 CAAGTGCGGTGGTGACCA 60.203 61.111 0.00 0.00 43.33 4.02
2550 2618 1.528586 GTACACTGCAGACACAGCAAG 59.471 52.381 23.35 0.93 42.17 4.01
2591 2659 0.319900 AGTCCACAACTACAGCGCAG 60.320 55.000 11.47 3.33 36.07 5.18
2609 2677 7.598869 TGAATTAACTCAACACACTGCTACTAG 59.401 37.037 0.00 0.00 0.00 2.57
2611 2679 6.202954 GTGAATTAACTCAACACACTGCTACT 59.797 38.462 0.00 0.00 0.00 2.57
2644 2712 0.466555 GCACCCAACCACAGGTACAA 60.467 55.000 0.00 0.00 33.12 2.41
2648 2716 1.719063 ATCAGCACCCAACCACAGGT 61.719 55.000 0.00 0.00 37.65 4.00
2673 2746 4.705337 ACCAGAAAGCTAGAGACTAACG 57.295 45.455 0.00 0.00 0.00 3.18
2676 2749 4.645588 GCCTAACCAGAAAGCTAGAGACTA 59.354 45.833 0.00 0.00 0.00 2.59
2683 2756 1.909302 AGCTGCCTAACCAGAAAGCTA 59.091 47.619 0.00 0.00 38.11 3.32
2701 2774 1.226773 CTTAAATGGCAGCCGCAGC 60.227 57.895 7.03 0.00 41.24 5.25
2702 2775 1.027357 ATCTTAAATGGCAGCCGCAG 58.973 50.000 7.03 0.00 41.24 5.18
2703 2776 0.740149 CATCTTAAATGGCAGCCGCA 59.260 50.000 7.03 0.00 41.24 5.69
2704 2777 0.031178 CCATCTTAAATGGCAGCCGC 59.969 55.000 7.03 0.00 31.75 6.53
2705 2778 1.392589 ACCATCTTAAATGGCAGCCG 58.607 50.000 7.03 0.00 42.82 5.52
2709 2782 5.306678 ACAAAAGGAACCATCTTAAATGGCA 59.693 36.000 13.42 0.00 42.82 4.92
2713 2786 8.650490 ACATCAACAAAAGGAACCATCTTAAAT 58.350 29.630 0.00 0.00 0.00 1.40
2730 2803 1.605232 CAGCACAGCAGACATCAACAA 59.395 47.619 0.00 0.00 0.00 2.83
2736 2809 0.395686 ACAGTCAGCACAGCAGACAT 59.604 50.000 15.28 2.29 45.34 3.06
2739 2812 1.006922 CGACAGTCAGCACAGCAGA 60.007 57.895 0.41 0.00 0.00 4.26
2740 2813 1.006922 TCGACAGTCAGCACAGCAG 60.007 57.895 0.41 0.00 0.00 4.24
2741 2814 1.006922 CTCGACAGTCAGCACAGCA 60.007 57.895 0.41 0.00 0.00 4.41
2742 2815 1.735920 CCTCGACAGTCAGCACAGC 60.736 63.158 0.41 0.00 0.00 4.40
2746 2819 2.653115 CAGCCTCGACAGTCAGCA 59.347 61.111 0.41 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.