AutoCloner

Multiple sequence alignment - TraesCS7D01G031200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G031200	chr7D	100.000	6958	0	0	1	6958	16387870	16380913	0.000000e+00	12850
1	TraesCS7D01G031200	chr7D	92.355	4068	192	44	2653	6638	26392833	26388803	0.000000e+00	5679
2	TraesCS7D01G031200	chr7D	81.568	1416	233	14	4236	5638	17122608	17124008	0.000000e+00	1144
3	TraesCS7D01G031200	chr7D	81.534	1408	230	16	4245	5638	16760003	16758612	0.000000e+00	1133
4	TraesCS7D01G031200	chr7D	91.766	753	35	5	1594	2321	26399630	26398880	0.000000e+00	1022
5	TraesCS7D01G031200	chr7D	81.744	734	53	21	685	1365	26400472	26399767	7.940000e-149	538
6	TraesCS7D01G031200	chr7D	94.576	295	14	2	2363	2656	26393285	26392992	8.230000e-124	455
7	TraesCS7D01G031200	chr7D	94.662	281	15	0	6666	6946	26388805	26388525	2.980000e-118	436
8	TraesCS7D01G031200	chr7D	92.248	129	10	0	516	644	51857926	51858054	4.290000e-42	183
9	TraesCS7D01G031200	chr7D	92.157	102	4	1	1393	1494	26399768	26399671	2.620000e-29	141
10	TraesCS7D01G031200	chr4A	91.236	6093	309	84	680	6599	718419242	718425282	0.000000e+00	8085
11	TraesCS7D01G031200	chr4A	84.080	2613	317	63	3089	5663	718938654	718936103	0.000000e+00	2429
12	TraesCS7D01G031200	chr4A	81.594	1418	229	18	4236	5638	717259800	717258400	0.000000e+00	1144
13	TraesCS7D01G031200	chr4A	81.215	1416	238	14	4236	5638	717753706	717755106	0.000000e+00	1116
14	TraesCS7D01G031200	chr4A	91.274	424	22	5	6499	6922	718906239	718905831	1.310000e-156	564
15	TraesCS7D01G031200	chr4A	86.072	359	45	5	6602	6958	718429198	718429553	1.420000e-101	381
16	TraesCS7D01G031200	chr4A	81.211	479	35	29	680	1128	718953631	718953178	1.120000e-87	335
17	TraesCS7D01G031200	chr4A	82.804	378	39	14	5695	6049	718936099	718935725	1.460000e-81	315
18	TraesCS7D01G031200	chr4A	89.637	193	18	2	6067	6259	718906492	718906302	1.940000e-60	244
19	TraesCS7D01G031200	chr7A	98.072	3372	57	6	2776	6144	15286271	15282905	0.000000e+00	5860
20	TraesCS7D01G031200	chr7A	89.391	2347	104	43	517	2778	15289000	15286714	0.000000e+00	2820
21	TraesCS7D01G031200	chr7A	96.848	825	17	2	6143	6958	15282645	15281821	0.000000e+00	1371
22	TraesCS7D01G031200	chr7A	81.151	1390	232	16	4259	5634	16427682	16429055	0.000000e+00	1088
23	TraesCS7D01G031200	chr7A	95.879	364	15	0	1	364	15291043	15290680	2.160000e-164	590
24	TraesCS7D01G031200	chr7A	95.706	163	7	0	348	510	15289201	15289039	5.350000e-66	263
25	TraesCS7D01G031200	chr5A	79.762	504	81	11	2042	2537	543565034	543564544	5.170000e-91	346
26	TraesCS7D01G031200	chr5D	81.136	440	74	8	77	510	432573541	432573105	1.860000e-90	344
27	TraesCS7D01G031200	chr5D	92.029	138	11	0	511	648	432573072	432572935	1.980000e-45	195
28	TraesCS7D01G031200	chr7B	91.304	138	12	0	511	648	115541701	115541838	9.210000e-44	189
29	TraesCS7D01G031200	chr2B	91.304	138	12	0	511	648	72928073	72928210	9.210000e-44	189
30	TraesCS7D01G031200	chr6B	90.580	138	13	0	511	648	268305261	268305398	4.290000e-42	183
31	TraesCS7D01G031200	chr5B	86.667	120	15	1	2229	2348	533378087	533378205	1.570000e-26	132

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G031200	chr7D	16380913	16387870	6957	True	12850.0	12850	100.000000	1	6958	1	chr7D.!!$R1	6957
1	TraesCS7D01G031200	chr7D	26388525	26393285	4760	True	2190.0	5679	93.864333	2363	6946	3	chr7D.!!$R3	4583
2	TraesCS7D01G031200	chr7D	17122608	17124008	1400	False	1144.0	1144	81.568000	4236	5638	1	chr7D.!!$F1	1402
3	TraesCS7D01G031200	chr7D	16758612	16760003	1391	True	1133.0	1133	81.534000	4245	5638	1	chr7D.!!$R2	1393
4	TraesCS7D01G031200	chr7D	26398880	26400472	1592	True	567.0	1022	88.555667	685	2321	3	chr7D.!!$R4	1636
5	TraesCS7D01G031200	chr4A	718419242	718429553	10311	False	4233.0	8085	88.654000	680	6958	2	chr4A.!!$F2	6278
6	TraesCS7D01G031200	chr4A	718935725	718938654	2929	True	1372.0	2429	83.442000	3089	6049	2	chr4A.!!$R4	2960
7	TraesCS7D01G031200	chr4A	717258400	717259800	1400	True	1144.0	1144	81.594000	4236	5638	1	chr4A.!!$R1	1402
8	TraesCS7D01G031200	chr4A	717753706	717755106	1400	False	1116.0	1116	81.215000	4236	5638	1	chr4A.!!$F1	1402
9	TraesCS7D01G031200	chr4A	718905831	718906492	661	True	404.0	564	90.455500	6067	6922	2	chr4A.!!$R3	855
10	TraesCS7D01G031200	chr7A	15281821	15291043	9222	True	2180.8	5860	95.179200	1	6958	5	chr7A.!!$R1	6957
11	TraesCS7D01G031200	chr7A	16427682	16429055	1373	False	1088.0	1088	81.151000	4259	5634	1	chr7A.!!$F1	1375
12	TraesCS7D01G031200	chr5D	432572935	432573541	606	True	269.5	344	86.582500	77	648	2	chr5D.!!$R1	571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
82	83	0.393402	GGTCACCGGTTTATGGGTCC	60.393	60.000	2.97	33.23	4.46	F
1242	2830	0.179054	GGCTGGAAGAACCGGGATAC	60.179	60.000	6.32	44.77	2.24	F
2058	3720	0.536687	ACAAGCACACATCAGCTGCT	60.537	50.000	9.47	43.21	4.24	F
2125	3789	1.125093	AATCAGACACCACCCACCGA	61.125	55.000	0.00	0.00	4.69	F
3420	5750	1.956477	TGACCTTTTGCTTCTTCTGGC	59.044	47.619	0.00	0.00	4.85	F
5598	7979	1.402720	CGATCAACGCCCATTTTGCTT	60.403	47.619	0.00	34.51	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2077	3740	0.178964	CTTGGGACTTTGGGAGGCAA	60.179	55.000	0.00	33.80	4.52	R
2192	3856	1.339438	TGGATTGAGAGAAGGCACTGC	60.339	52.381	0.00	40.86	4.40	R
3714	6059	1.228003	TGGGTGGTTTAGTGCGGTG	60.228	57.895	0.00	0.00	4.94	R
5220	7601	6.091441	GCAACTCTTAGTACCTCAACATGAAG	59.909	42.308	0.00	0.00	3.02	R
5687	8068	1.300620	CCGTGGAGCGACTGAACAA	60.301	57.895	0.00	44.77	2.83	R
6611	13245	2.292126	TGGAATGCTTTGGAAGGCCATA	60.292	45.455	5.01	45.46	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	83	0.393402	GGTCACCGGTTTATGGGTCC	60.393	60.000	2.97	0.00	33.23	4.46
147	148	1.590525	GTTCAGACGACGTGGTGCA	60.591	57.895	8.32	0.00	0.00	4.57
177	178	1.192428	GGGGTAGGTTCAGTGATCGT	58.808	55.000	0.00	0.00	0.00	3.73
238	239	4.722700	GCCTGGTGGACGCCATGT	62.723	66.667	4.89	0.00	37.96	3.21
261	262	1.179174	GGGACTGGACCAAAACCTGC	61.179	60.000	0.00	0.00	0.00	4.85
372	1869	0.980423	ACCCTTCTCCTTCAGTCTGC	59.020	55.000	0.00	0.00	0.00	4.26
507	2005	4.593864	CCGCCTCTAGCTTCGCCC	62.594	72.222	0.00	0.00	40.39	6.13
510	2008	2.487532	GCCTCTAGCTTCGCCCGTA	61.488	63.158	0.00	0.00	38.99	4.02
511	2009	2.012902	GCCTCTAGCTTCGCCCGTAA	62.013	60.000	0.00	0.00	38.99	3.18
515	2013	1.135199	TCTAGCTTCGCCCGTAAAGTG	60.135	52.381	0.00	0.00	0.00	3.16
631	2161	4.626042	CCTCATCTCTTGGAGGTTAATCG	58.374	47.826	0.00	0.00	44.59	3.34
650	2180	1.013323	GCAGCTTACAATCGCGACG	60.013	57.895	12.93	8.67	0.00	5.12
658	2188	0.599204	ACAATCGCGACGGTTTCACT	60.599	50.000	12.93	0.00	0.00	3.41
682	2212	7.011482	ACTGTGTACTTCTGCAGAAAAACTAAG	59.989	37.037	28.16	25.24	33.07	2.18
698	2228	9.977762	GAAAAACTAAGAAGTGAAACGAAACTA	57.022	29.630	0.00	0.00	45.86	2.24
781	2316	9.451002	AAAACTATAGTAGGAAAGAAGGAAAGC	57.549	33.333	5.65	0.00	0.00	3.51
807	2346	0.655733	ACGAAAAACCAGCAGACACG	59.344	50.000	0.00	0.00	0.00	4.49
907	2449	2.870119	GCACATGCCCACTTTGCCA	61.870	57.895	0.00	0.00	34.31	4.92
938	2486	2.766651	CGCCCTGCCCTACCCTTA	60.767	66.667	0.00	0.00	0.00	2.69
1012	2569	2.490217	CCATCGTCGGCGTCTCTT	59.510	61.111	10.18	0.00	39.49	2.85
1067	2624	1.839994	CCTCTCTGGTTCAGCCCAATA	59.160	52.381	0.00	0.00	33.07	1.90
1172	2760	5.243730	TCACCCATCTGGAGATTTTTGAAAC	59.756	40.000	0.00	0.00	37.39	2.78
1173	2761	4.218417	ACCCATCTGGAGATTTTTGAAACG	59.782	41.667	0.00	0.00	37.39	3.60
1242	2830	0.179054	GGCTGGAAGAACCGGGATAC	60.179	60.000	6.32	0.00	44.77	2.24
1255	2843	5.272283	ACCGGGATACTATTTATATGGCG	57.728	43.478	6.32	0.00	0.00	5.69
1271	2872	8.827177	TTATATGGCGTAGGAGTAGATTTTTG	57.173	34.615	0.00	0.00	0.00	2.44
1348	2955	6.984740	TCGAATTTCCAAAACGAAAATCAG	57.015	33.333	0.00	0.00	35.47	2.90
1391	2998	2.221169	CTTAGTGAGTTGGTGCTTGCA	58.779	47.619	0.00	0.00	0.00	4.08
1444	3052	1.133915	ACAGTGATTTGGACCAACGGT	60.134	47.619	6.36	0.00	39.44	4.83
1466	3074	2.992543	GCTGTGTTTTGACTTTTGCACA	59.007	40.909	0.00	0.00	35.83	4.57
1467	3075	3.618150	GCTGTGTTTTGACTTTTGCACAT	59.382	39.130	0.00	0.00	36.46	3.21
1468	3076	4.093261	GCTGTGTTTTGACTTTTGCACATT	59.907	37.500	0.00	0.00	36.46	2.71
1469	3077	5.290643	GCTGTGTTTTGACTTTTGCACATTA	59.709	36.000	0.00	0.00	36.46	1.90
1559	3167	3.310860	ATCCGCCGGTTGACCAGAC	62.311	63.158	1.63	0.00	35.14	3.51
1565	3173	1.882352	GCCGGTTGACCAGACAAATCT	60.882	52.381	1.90	0.00	35.14	2.40
1695	3326	6.248631	CGTTTCGTCTTATTTCCAGATTTCC	58.751	40.000	0.00	0.00	0.00	3.13
1700	3331	8.040716	TCGTCTTATTTCCAGATTTCCTTTTC	57.959	34.615	0.00	0.00	0.00	2.29
1832	3493	1.743252	GGAGCTTCGTCAAGGCTGG	60.743	63.158	0.00	0.00	36.37	4.85
2058	3720	0.536687	ACAAGCACACATCAGCTGCT	60.537	50.000	9.47	0.00	43.21	4.24
2073	3736	3.857854	GCTGGAGCATCACGCACG	61.858	66.667	0.00	0.00	46.13	5.34
2077	3740	1.811266	GGAGCATCACGCACGTCAT	60.811	57.895	0.00	0.00	46.13	3.06
2125	3789	1.125093	AATCAGACACCACCCACCGA	61.125	55.000	0.00	0.00	0.00	4.69
2334	3998	4.977739	TCACTGAATCATCCCCTAAATCCT	59.022	41.667	0.00	0.00	0.00	3.24
2356	4020	6.889177	TCCTCAATTAGCATAAACAATCCACA	59.111	34.615	0.00	0.00	0.00	4.17
2468	4136	4.338964	ACAAGTTCACATCAAATGCAGTGA	59.661	37.500	5.41	5.41	39.06	3.41
2519	4188	8.948631	TCAAATGTTGTTTACTGCCAATTTTA	57.051	26.923	0.00	0.00	0.00	1.52
2585	4255	8.098220	ACAGAATTTGAAAATATTTGGGTTGC	57.902	30.769	0.39	0.00	0.00	4.17
2969	5248	7.621426	GCTTTTGTTCATTCATTGCTGATCTTG	60.621	37.037	0.00	0.00	0.00	3.02
3039	5322	5.363005	GTCCATTAGAGTTAAGCTACCTGGA	59.637	44.000	0.00	9.55	32.05	3.86
3119	5403	3.914426	TTCCCTGAGGCTATTCTTGTC	57.086	47.619	0.00	0.00	0.00	3.18
3308	5627	5.587844	GTGATGTGGAAGATAGCAGTGAAAT	59.412	40.000	0.00	0.00	0.00	2.17
3363	5693	6.016527	GGGTTTTCTTCCTTAAGTGGTTACAG	60.017	42.308	0.97	0.00	34.13	2.74
3420	5750	1.956477	TGACCTTTTGCTTCTTCTGGC	59.044	47.619	0.00	0.00	0.00	4.85
3553	5897	3.563390	GCTCTTTCCTAACATGGCTCATC	59.437	47.826	0.00	0.00	0.00	2.92
3647	5991	7.805071	AGCAAGAAAAATCACTACAAATTCGAG	59.195	33.333	0.00	0.00	0.00	4.04
3916	6264	6.825721	CCTGTCTAAGAGGAACAAAATGCTAT	59.174	38.462	0.00	0.00	31.48	2.97
4449	6821	4.025396	GGTGAATGAACATAGTGATCGCAG	60.025	45.833	9.33	0.47	0.00	5.18
5115	7496	3.070576	GCCCCTCATGGTTGCACC	61.071	66.667	0.00	0.00	39.22	5.01
5598	7979	1.402720	CGATCAACGCCCATTTTGCTT	60.403	47.619	0.00	0.00	34.51	3.91
5687	8068	4.184649	ACAGAGGGGAACTTGATGTTTT	57.815	40.909	0.00	0.00	39.30	2.43
5755	8137	9.651913	ATGAAGACTTTAAAATTGTGTGTTTGT	57.348	25.926	0.00	0.00	0.00	2.83
5999	8409	2.157738	CTTGCCTTGCTCTGCTAAACT	58.842	47.619	0.00	0.00	0.00	2.66
6317	9014	7.724305	TTTTCTTAACTGTATCTGGACACAC	57.276	36.000	0.00	0.00	0.00	3.82
6611	13245	1.326548	GTGTGCTTTGAAGTTCGACGT	59.673	47.619	0.00	0.00	0.00	4.34
6860	13503	6.011481	ACTAGTCTCCTATTGGGTACTATGC	58.989	44.000	8.28	0.00	35.64	3.14

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
57	58	1.730064	CATAAACCGGTGACCAGTTCG	59.270	52.381	8.52	0.00	0.00	3.95
60	61	0.326927	CCCATAAACCGGTGACCAGT	59.673	55.000	8.52	0.00	0.00	4.00
75	76	0.695803	GGATCTCACCCTGGACCCAT	60.696	60.000	0.00	0.00	0.00	4.00
147	148	0.104620	ACCTACCCCAACCTCAGTGT	60.105	55.000	0.00	0.00	0.00	3.55
153	154	1.064825	CACTGAACCTACCCCAACCT	58.935	55.000	0.00	0.00	0.00	3.50
177	178	3.150949	CAGTGGTGCACCCAGAGA	58.849	61.111	32.62	11.42	46.45	3.10
238	239	1.279846	GGTTTTGGTCCAGTCCCGATA	59.720	52.381	0.00	0.00	0.00	2.92
372	1869	1.961277	GTCAAGGTGCACAGACGGG	60.961	63.158	20.43	1.52	0.00	5.28
451	1949	3.537206	GAGGTGGTGCTTGCCGACT	62.537	63.158	0.00	0.00	0.00	4.18
482	1980	3.949031	GCTAGAGGCGGACAAGTAG	57.051	57.895	0.00	0.00	0.00	2.57
628	2158	1.490693	CGCGATTGTAAGCTGCCGAT	61.491	55.000	0.00	0.00	0.00	4.18
631	2161	1.348594	GTCGCGATTGTAAGCTGCC	59.651	57.895	14.06	0.00	0.00	4.85
650	2180	3.202906	TGCAGAAGTACACAGTGAAACC	58.797	45.455	7.81	0.00	37.80	3.27
658	2188	7.045416	TCTTAGTTTTTCTGCAGAAGTACACA	58.955	34.615	29.32	20.05	35.21	3.72
807	2346	2.622962	AAGCCCGCACCGTTTTAGC	61.623	57.895	0.00	0.00	0.00	3.09
921	2469	2.766651	TAAGGGTAGGGCAGGGCG	60.767	66.667	0.00	0.00	0.00	6.13
929	2477	5.021458	TCTCTGTTTACTGGTAAGGGTAGG	58.979	45.833	0.00	0.00	0.00	3.18
932	2480	4.283722	CACTCTCTGTTTACTGGTAAGGGT	59.716	45.833	0.00	0.00	0.00	4.34
937	2485	2.230508	CCGCACTCTCTGTTTACTGGTA	59.769	50.000	0.00	0.00	0.00	3.25
938	2486	1.000955	CCGCACTCTCTGTTTACTGGT	59.999	52.381	0.00	0.00	0.00	4.00
1000	2557	0.179158	GGAGAAGAAGAGACGCCGAC	60.179	60.000	0.00	0.00	0.00	4.79
1012	2569	0.536687	ACCTGACGACACGGAGAAGA	60.537	55.000	9.48	0.00	0.00	2.87
1067	2624	1.299939	GGGATGGGAGAAAGGGAAGT	58.700	55.000	0.00	0.00	0.00	3.01
1172	2760	2.797278	AAGGAGACCGGGCTATGCG	61.797	63.158	11.74	0.00	0.00	4.73
1173	2761	1.227674	CAAGGAGACCGGGCTATGC	60.228	63.158	11.74	0.00	0.00	3.14
1232	2820	5.188359	ACGCCATATAAATAGTATCCCGGTT	59.812	40.000	0.00	0.00	0.00	4.44
1317	2918	8.859517	TTCGTTTTGGAAATTCGAAAATTAGT	57.140	26.923	16.58	0.00	36.67	2.24
1348	2955	4.814234	GGTCCAAAACCCAAAAATCACTTC	59.186	41.667	0.00	0.00	42.85	3.01
1391	2998	6.012745	GGAGATAATGATTTACTGCCCCAAT	58.987	40.000	0.00	0.00	0.00	3.16
1444	3052	2.992543	GTGCAAAAGTCAAAACACAGCA	59.007	40.909	0.00	0.00	0.00	4.41
1468	3076	9.226606	CCTCACCACAAGAATACAAAGTAATTA	57.773	33.333	0.00	0.00	0.00	1.40
1469	3077	7.942341	TCCTCACCACAAGAATACAAAGTAATT	59.058	33.333	0.00	0.00	0.00	1.40
1509	3117	0.905357	CAGATCACCTTCCTCGGGTT	59.095	55.000	0.00	0.00	34.44	4.11
1512	3120	1.776662	TACCAGATCACCTTCCTCGG	58.223	55.000	0.00	0.00	0.00	4.63
1565	3173	0.880718	TGTATGCGCGGTGACAAACA	60.881	50.000	8.83	0.00	0.00	2.83
1569	3177	1.445410	GACTGTATGCGCGGTGACA	60.445	57.895	8.83	2.98	0.00	3.58
1640	3271	7.696035	GCCAAAATGAAAGTAAACAAAAACAGG	59.304	33.333	0.00	0.00	0.00	4.00
1796	3453	3.741388	GCTCCGCCAGTGAACATAACTAT	60.741	47.826	0.00	0.00	0.00	2.12
1797	3454	2.418197	GCTCCGCCAGTGAACATAACTA	60.418	50.000	0.00	0.00	0.00	2.24
1917	3578	3.423749	TCTGTATTGGTGTCGGTCAGTA	58.576	45.455	0.00	0.00	0.00	2.74
2036	3698	0.892358	AGCTGATGTGTGCTTGTGGG	60.892	55.000	0.00	0.00	35.86	4.61
2058	3720	2.432456	GACGTGCGTGATGCTCCA	60.432	61.111	0.67	0.00	46.63	3.86
2069	3732	1.523154	TTTGGGAGGCAATGACGTGC	61.523	55.000	0.00	0.00	44.14	5.34
2073	3736	1.177401	GGACTTTGGGAGGCAATGAC	58.823	55.000	0.00	0.00	33.80	3.06
2077	3740	0.178964	CTTGGGACTTTGGGAGGCAA	60.179	55.000	0.00	0.00	33.80	4.52
2192	3856	1.339438	TGGATTGAGAGAAGGCACTGC	60.339	52.381	0.00	0.00	40.86	4.40
2334	3998	7.459795	TGTGTGGATTGTTTATGCTAATTGA	57.540	32.000	0.00	0.00	0.00	2.57
2519	4188	4.334481	GCTACCAAATACCAAACGTGCTAT	59.666	41.667	0.00	0.00	0.00	2.97
2969	5248	3.066760	AGAACAGCAGTAAAAACCAGCAC	59.933	43.478	0.00	0.00	0.00	4.40
3039	5322	6.014925	GGGGTAACAATACTGAACCAAATGTT	60.015	38.462	3.58	0.00	38.15	2.71
3119	5403	1.534595	GCCTCTCACTGCAGAAAACAG	59.465	52.381	23.35	8.92	41.08	3.16
3142	5426	3.398954	CGGAACCGTATTGTCAAATGG	57.601	47.619	4.99	0.00	34.35	3.16
3308	5627	3.827876	ACAGAACATGCCAACAATCATGA	59.172	39.130	0.00	0.00	41.82	3.07
3420	5750	5.640732	CGGATAGAAATTTCCACAACAAGG	58.359	41.667	14.61	0.00	31.99	3.61
3553	5897	9.372369	AGAACTAAGAAAAATGATCGACCTTAG	57.628	33.333	0.00	0.00	38.20	2.18
3714	6059	1.228003	TGGGTGGTTTAGTGCGGTG	60.228	57.895	0.00	0.00	0.00	4.94
5220	7601	6.091441	GCAACTCTTAGTACCTCAACATGAAG	59.909	42.308	0.00	0.00	0.00	3.02
5598	7979	1.754226	TGCATAGGATGTCGTACTGCA	59.246	47.619	11.85	11.85	33.21	4.41
5687	8068	1.300620	CCGTGGAGCGACTGAACAA	60.301	57.895	0.00	0.00	44.77	2.83
5846	8232	9.797556	GACATTTATTTTAGGATGTAAACCACC	57.202	33.333	0.00	0.00	33.21	4.61
5878	8266	3.611766	ACACATAACTACAGGGTCAGC	57.388	47.619	0.00	0.00	0.00	4.26
6611	13245	2.292126	TGGAATGCTTTGGAAGGCCATA	60.292	45.455	5.01	0.00	45.46	2.74
6860	13503	8.682936	AATGAGTACCCAATTAGAGCAAATAG	57.317	34.615	0.00	0.00	0.00	1.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.