Multiple sequence alignment - TraesCS7D01G030700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G030700 chr7D 100.000 2807 0 0 1 2807 16152919 16155725 0.000000e+00 5184.0
1 TraesCS7D01G030700 chr7D 93.060 562 22 5 1 555 16183022 16183573 0.000000e+00 806.0
2 TraesCS7D01G030700 chr7D 84.689 836 85 15 1227 2059 16199348 16200143 0.000000e+00 795.0
3 TraesCS7D01G030700 chr7D 88.483 547 35 9 1 541 26527621 26528145 1.100000e-178 636.0
4 TraesCS7D01G030700 chr7D 80.679 766 124 15 1067 1816 16170677 16171434 8.720000e-160 573.0
5 TraesCS7D01G030700 chr7D 91.990 387 31 0 1429 1815 16161581 16161967 6.840000e-151 544.0
6 TraesCS7D01G030700 chr7D 79.871 775 122 18 1067 1815 26494248 26495014 1.140000e-148 536.0
7 TraesCS7D01G030700 chr7D 97.984 248 4 1 2351 2598 16185337 16185583 2.000000e-116 429.0
8 TraesCS7D01G030700 chr7D 90.732 205 6 2 550 744 16183844 16184045 7.710000e-66 261.0
9 TraesCS7D01G030700 chr7D 82.182 275 43 4 1072 1346 26504155 26504423 6.050000e-57 231.0
10 TraesCS7D01G030700 chr7D 78.777 278 45 8 1047 1323 83456189 83455925 1.030000e-39 174.0
11 TraesCS7D01G030700 chr7D 95.000 100 2 2 541 637 26528573 26528672 1.350000e-33 154.0
12 TraesCS7D01G030700 chr7D 91.463 82 6 1 1977 2057 26499540 26499621 8.220000e-21 111.0
13 TraesCS7D01G030700 chr7D 93.333 75 5 0 670 744 26528958 26529032 8.220000e-21 111.0
14 TraesCS7D01G030700 chr7D 91.358 81 6 1 662 741 16242443 16242523 2.960000e-20 110.0
15 TraesCS7D01G030700 chr7D 91.026 78 5 2 1981 2057 26495078 26495154 1.380000e-18 104.0
16 TraesCS7D01G030700 chr3D 93.041 1868 100 20 751 2598 584699757 584697900 0.000000e+00 2702.0
17 TraesCS7D01G030700 chr3D 96.662 749 14 4 1 744 584702498 584701756 0.000000e+00 1234.0
18 TraesCS7D01G030700 chr3D 84.689 836 85 15 1227 2059 584689095 584688300 0.000000e+00 795.0
19 TraesCS7D01G030700 chr3D 89.286 84 8 1 662 744 585361665 585361582 1.380000e-18 104.0
20 TraesCS7D01G030700 chr7A 92.312 1847 114 14 765 2598 15005540 15007371 0.000000e+00 2599.0
21 TraesCS7D01G030700 chr7A 89.604 404 18 5 358 744 15000731 15001127 2.510000e-135 492.0
22 TraesCS7D01G030700 chr7A 86.813 364 35 4 1 364 14985087 14985437 7.290000e-106 394.0
23 TraesCS7D01G030700 chr7A 78.136 279 45 11 1047 1323 85121614 85121350 2.240000e-36 163.0
24 TraesCS7D01G030700 chr7A 90.123 81 7 1 662 741 15081624 15081704 1.380000e-18 104.0
25 TraesCS7D01G030700 chr4A 89.347 1042 87 11 786 1810 718607920 718606886 0.000000e+00 1288.0
26 TraesCS7D01G030700 chr4A 89.102 679 40 12 88 744 718847308 718847974 0.000000e+00 813.0
27 TraesCS7D01G030700 chr4A 93.969 514 28 2 843 1353 718848683 718849196 0.000000e+00 774.0
28 TraesCS7D01G030700 chr4A 92.727 440 32 0 1391 1830 718849803 718850242 1.100000e-178 636.0
29 TraesCS7D01G030700 chr4A 78.927 783 130 24 1067 1826 718866251 718867021 1.500000e-137 499.0
30 TraesCS7D01G030700 chr4A 92.105 266 20 1 107 371 718615860 718615595 9.490000e-100 374.0
31 TraesCS7D01G030700 chr4A 82.451 359 14 16 370 710 718615306 718614979 4.610000e-68 268.0
32 TraesCS7D01G030700 chr4A 86.782 174 6 7 585 744 718614078 718613908 7.990000e-41 178.0
33 TraesCS7D01G030700 chr4A 94.059 101 6 0 2 102 718845634 718845734 1.350000e-33 154.0
34 TraesCS7D01G030700 chr4A 89.109 101 11 0 537 637 725462408 725462508 2.940000e-25 126.0
35 TraesCS7D01G030700 chr4A 93.333 60 4 0 675 734 718865862 718865921 3.850000e-14 89.8
36 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 1632615 1632825 7.340000e-101 377.0
37 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 49236266 49236476 7.340000e-101 377.0
38 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 49241741 49241951 7.340000e-101 377.0
39 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 118320424 118320214 7.340000e-101 377.0
40 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 437717038 437717248 7.340000e-101 377.0
41 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 437727974 437728184 7.340000e-101 377.0
42 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 445329485 445329695 7.340000e-101 377.0
43 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 445334940 445335150 7.340000e-101 377.0
44 TraesCS7D01G030700 chr4D 99.052 211 1 1 2598 2807 462825201 462824991 7.340000e-101 377.0
45 TraesCS7D01G030700 chr4D 91.221 262 19 4 2319 2579 363683710 363683968 1.240000e-93 353.0
46 TraesCS7D01G030700 chr4D 90.875 263 21 3 2318 2579 336538921 336538661 1.600000e-92 350.0
47 TraesCS7D01G030700 chr2A 91.078 269 22 2 2318 2586 119341790 119342056 2.060000e-96 363.0
48 TraesCS7D01G030700 chr2A 78.440 218 27 14 433 637 31987704 31987494 1.060000e-24 124.0
49 TraesCS7D01G030700 chr5D 92.032 251 17 3 2319 2569 269336244 269336491 1.600000e-92 350.0
50 TraesCS7D01G030700 chr2D 90.226 266 23 3 2315 2579 645733175 645733438 7.440000e-91 344.0
51 TraesCS7D01G030700 chr2D 80.569 211 33 5 1135 1344 599003664 599003461 3.740000e-34 156.0
52 TraesCS7D01G030700 chr2B 89.963 269 24 3 2318 2586 168865179 168865444 7.440000e-91 344.0
53 TraesCS7D01G030700 chr7B 77.338 278 49 8 1047 1323 32587165 32586901 4.840000e-33 152.0
54 TraesCS7D01G030700 chr7B 92.593 81 6 0 537 617 503193573 503193653 1.770000e-22 117.0
55 TraesCS7D01G030700 chr7B 92.593 81 6 0 537 617 503200022 503200102 1.770000e-22 117.0
56 TraesCS7D01G030700 chr7B 100.000 28 0 0 2218 2245 680916740 680916767 5.000000e-03 52.8
57 TraesCS7D01G030700 chr3B 78.462 195 27 11 433 617 824018189 824018000 2.290000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G030700 chr7D 16152919 16155725 2806 False 5184.000000 5184 100.000000 1 2807 1 chr7D.!!$F1 2806
1 TraesCS7D01G030700 chr7D 16199348 16200143 795 False 795.000000 795 84.689000 1227 2059 1 chr7D.!!$F4 832
2 TraesCS7D01G030700 chr7D 16170677 16171434 757 False 573.000000 573 80.679000 1067 1816 1 chr7D.!!$F3 749
3 TraesCS7D01G030700 chr7D 16183022 16185583 2561 False 498.666667 806 93.925333 1 2598 3 chr7D.!!$F8 2597
4 TraesCS7D01G030700 chr7D 26494248 26495154 906 False 320.000000 536 85.448500 1067 2057 2 chr7D.!!$F9 990
5 TraesCS7D01G030700 chr7D 26527621 26529032 1411 False 300.333333 636 92.272000 1 744 3 chr7D.!!$F10 743
6 TraesCS7D01G030700 chr3D 584697900 584702498 4598 True 1968.000000 2702 94.851500 1 2598 2 chr3D.!!$R3 2597
7 TraesCS7D01G030700 chr3D 584688300 584689095 795 True 795.000000 795 84.689000 1227 2059 1 chr3D.!!$R1 832
8 TraesCS7D01G030700 chr7A 15005540 15007371 1831 False 2599.000000 2599 92.312000 765 2598 1 chr7A.!!$F3 1833
9 TraesCS7D01G030700 chr4A 718606886 718607920 1034 True 1288.000000 1288 89.347000 786 1810 1 chr4A.!!$R1 1024
10 TraesCS7D01G030700 chr4A 718845634 718850242 4608 False 594.250000 813 92.464250 2 1830 4 chr4A.!!$F2 1828
11 TraesCS7D01G030700 chr4A 718865862 718867021 1159 False 294.400000 499 86.130000 675 1826 2 chr4A.!!$F3 1151
12 TraesCS7D01G030700 chr4A 718613908 718615860 1952 True 273.333333 374 87.112667 107 744 3 chr4A.!!$R2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 2298 0.516877 CATGACGCTCTCCGCAAAAA 59.483 50.0 0.0 0.0 41.76 1.94 F
780 6895 0.741221 GAAGCCTAGAAGGTGCGGTG 60.741 60.0 0.0 0.0 37.80 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 8276 1.381872 CGGACAGGGTCTCCTCCAT 60.382 63.158 0.0 0.0 42.67 3.41 R
2665 9713 0.031449 TCGTCATCAACACTGTCGCA 59.969 50.000 0.0 0.0 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.518493 ACTCTACAAAGTAATGAACGAACCA 58.482 36.000 0.00 0.00 0.00 3.67
150 1737 6.985188 TGACTGAGCTGGTGATTTTATTAC 57.015 37.500 0.00 0.00 0.00 1.89
211 1798 3.323751 AATTGCTCATGCCTTGAAACC 57.676 42.857 0.00 0.00 38.71 3.27
251 1838 5.418310 TTTTGACCTTTACTTTCTCGCTG 57.582 39.130 0.00 0.00 0.00 5.18
298 1885 5.675538 GGCTACTGTTCATAAGGAATGACT 58.324 41.667 0.00 0.00 44.42 3.41
411 2294 2.015227 TATGCATGACGCTCTCCGCA 62.015 55.000 10.16 0.00 43.06 5.69
412 2295 2.815211 GCATGACGCTCTCCGCAA 60.815 61.111 0.00 0.00 41.76 4.85
413 2296 2.390599 GCATGACGCTCTCCGCAAA 61.391 57.895 0.00 0.00 41.76 3.68
414 2297 1.911293 GCATGACGCTCTCCGCAAAA 61.911 55.000 0.00 0.00 41.76 2.44
415 2298 0.516877 CATGACGCTCTCCGCAAAAA 59.483 50.000 0.00 0.00 41.76 1.94
416 2299 0.798776 ATGACGCTCTCCGCAAAAAG 59.201 50.000 0.00 0.00 41.76 2.27
417 2300 1.227999 TGACGCTCTCCGCAAAAAGG 61.228 55.000 0.00 0.00 41.76 3.11
418 2301 0.949105 GACGCTCTCCGCAAAAAGGA 60.949 55.000 0.00 0.00 41.76 3.36
555 3160 5.656213 AGCTAAGGAAGTGTACGTGTTAT 57.344 39.130 0.00 0.00 0.00 1.89
664 3283 2.092321 GTCCCTCTCAGGCTAGACAGTA 60.092 54.545 0.00 0.00 32.73 2.74
665 3284 2.092321 TCCCTCTCAGGCTAGACAGTAC 60.092 54.545 0.00 0.00 32.73 2.73
666 3285 2.357257 CCCTCTCAGGCTAGACAGTACA 60.357 54.545 0.00 0.00 32.73 2.90
744 4646 4.069869 CACCTTGACTGGCAGGTG 57.930 61.111 20.34 13.77 44.55 4.00
745 4647 2.113986 ACCTTGACTGGCAGGTGC 59.886 61.111 20.34 8.34 41.14 5.01
747 4649 3.052082 CTTGACTGGCAGGTGCGG 61.052 66.667 20.34 1.00 43.26 5.69
748 4650 3.832237 CTTGACTGGCAGGTGCGGT 62.832 63.158 20.34 0.00 43.26 5.68
780 6895 0.741221 GAAGCCTAGAAGGTGCGGTG 60.741 60.000 0.00 0.00 37.80 4.94
808 6923 2.513897 GGGTAGGTGGCGCATCAC 60.514 66.667 10.83 9.23 36.95 3.06
814 6929 3.104766 GTGGCGCATCACCATCAG 58.895 61.111 10.83 0.00 39.95 2.90
815 6930 2.825387 TGGCGCATCACCATCAGC 60.825 61.111 10.83 0.00 30.29 4.26
816 6931 2.825387 GGCGCATCACCATCAGCA 60.825 61.111 10.83 0.00 0.00 4.41
817 6932 2.191513 GGCGCATCACCATCAGCAT 61.192 57.895 10.83 0.00 0.00 3.79
825 6940 0.818445 CACCATCAGCATGCTCTCCC 60.818 60.000 19.68 0.00 34.76 4.30
870 6990 6.882140 TCAGAGTCCAACTTTTGTCTTGTTTA 59.118 34.615 0.00 0.00 0.00 2.01
896 7041 4.264253 TCAGACGATTTCATCTTTGCCAT 58.736 39.130 0.00 0.00 0.00 4.40
968 7117 7.010552 CACTTAAGCAACAGATATACAGGACAC 59.989 40.741 1.29 0.00 0.00 3.67
1188 7408 1.201429 AGAAGGTGCCCGTCCTCATT 61.201 55.000 4.09 0.00 32.53 2.57
1356 7757 5.418310 ACAAGGTTAGTTCATTTCACACG 57.582 39.130 0.00 0.00 0.00 4.49
1446 8248 1.617947 GCACCGGGATCCTCAAGACT 61.618 60.000 12.58 0.00 0.00 3.24
1474 8276 0.106619 GGAGGAGAGAGCCGGTAAGA 60.107 60.000 1.90 0.00 0.00 2.10
1516 8318 3.305676 GCTCAGACACTTAGAAGCTGTCA 60.306 47.826 18.61 6.43 38.43 3.58
1622 8622 1.228552 TTCCCTGGTTTGAGGCAGC 60.229 57.895 0.00 0.00 0.00 5.25
1766 8803 1.337387 GGAGGAGTACATCACTACGGC 59.663 57.143 0.00 0.00 43.70 5.68
1867 8912 0.868602 ATGGCGTCGTTCGATTACCG 60.869 55.000 6.91 0.00 42.86 4.02
1873 8918 1.942712 CGTTCGATTACCGGCGGAG 60.943 63.158 35.78 17.29 39.14 4.63
1905 8952 3.173668 TGTGAGTAGCTGTTTTCACGT 57.826 42.857 0.00 0.00 42.09 4.49
2182 9230 6.509386 TCTAAGGACTAGATTTTACCAGGGT 58.491 40.000 0.00 0.00 31.28 4.34
2598 9646 5.859114 GGAGTGTCATAACTAGTATCATGCG 59.141 44.000 0.00 0.00 0.00 4.73
2599 9647 6.392625 AGTGTCATAACTAGTATCATGCGT 57.607 37.500 0.00 0.00 0.00 5.24
2600 9648 7.308408 GGAGTGTCATAACTAGTATCATGCGTA 60.308 40.741 0.00 0.00 0.00 4.42
2601 9649 7.937649 AGTGTCATAACTAGTATCATGCGTAA 58.062 34.615 0.00 0.00 0.00 3.18
2602 9650 7.861372 AGTGTCATAACTAGTATCATGCGTAAC 59.139 37.037 0.00 0.00 0.00 2.50
2603 9651 7.646526 GTGTCATAACTAGTATCATGCGTAACA 59.353 37.037 0.00 0.00 0.00 2.41
2604 9652 8.192110 TGTCATAACTAGTATCATGCGTAACAA 58.808 33.333 0.00 0.00 0.00 2.83
2605 9653 9.193133 GTCATAACTAGTATCATGCGTAACAAT 57.807 33.333 0.00 0.00 0.00 2.71
2608 9656 7.639162 AACTAGTATCATGCGTAACAATAGC 57.361 36.000 0.00 0.00 0.00 2.97
2609 9657 6.982852 ACTAGTATCATGCGTAACAATAGCT 58.017 36.000 0.00 0.00 0.00 3.32
2610 9658 6.863645 ACTAGTATCATGCGTAACAATAGCTG 59.136 38.462 0.00 0.00 0.00 4.24
2611 9659 5.601662 AGTATCATGCGTAACAATAGCTGT 58.398 37.500 0.00 0.00 41.27 4.40
2612 9660 6.745116 AGTATCATGCGTAACAATAGCTGTA 58.255 36.000 0.00 0.00 37.23 2.74
2613 9661 6.863645 AGTATCATGCGTAACAATAGCTGTAG 59.136 38.462 0.00 0.00 37.23 2.74
2614 9662 5.257082 TCATGCGTAACAATAGCTGTAGA 57.743 39.130 0.00 0.00 37.23 2.59
2615 9663 5.656480 TCATGCGTAACAATAGCTGTAGAA 58.344 37.500 0.00 0.00 37.23 2.10
2616 9664 6.103330 TCATGCGTAACAATAGCTGTAGAAA 58.897 36.000 0.00 0.00 37.23 2.52
2617 9665 5.773239 TGCGTAACAATAGCTGTAGAAAC 57.227 39.130 0.00 0.00 37.23 2.78
2618 9666 5.231702 TGCGTAACAATAGCTGTAGAAACA 58.768 37.500 0.00 0.00 37.23 2.83
2632 9680 5.541845 TGTAGAAACAGACATGAACAGAGG 58.458 41.667 0.00 0.00 0.00 3.69
2633 9681 4.963318 AGAAACAGACATGAACAGAGGA 57.037 40.909 0.00 0.00 0.00 3.71
2634 9682 5.495926 AGAAACAGACATGAACAGAGGAT 57.504 39.130 0.00 0.00 0.00 3.24
2635 9683 5.243981 AGAAACAGACATGAACAGAGGATG 58.756 41.667 0.00 0.00 0.00 3.51
2636 9684 4.630644 AACAGACATGAACAGAGGATGT 57.369 40.909 0.00 0.00 46.97 3.06
2646 9694 3.526931 ACAGAGGATGTTGGACGTATG 57.473 47.619 0.00 0.00 39.96 2.39
2647 9695 3.096852 ACAGAGGATGTTGGACGTATGA 58.903 45.455 0.00 0.00 39.96 2.15
2648 9696 3.706594 ACAGAGGATGTTGGACGTATGAT 59.293 43.478 0.00 0.00 39.96 2.45
2649 9697 4.202161 ACAGAGGATGTTGGACGTATGATC 60.202 45.833 0.00 0.00 39.96 2.92
2650 9698 3.004839 AGAGGATGTTGGACGTATGATCG 59.995 47.826 0.00 0.00 0.00 3.69
2651 9699 2.693591 AGGATGTTGGACGTATGATCGT 59.306 45.455 0.00 0.00 46.88 3.73
2652 9700 3.132289 AGGATGTTGGACGTATGATCGTT 59.868 43.478 0.00 0.00 44.21 3.85
2653 9701 4.340097 AGGATGTTGGACGTATGATCGTTA 59.660 41.667 0.00 0.00 44.21 3.18
2654 9702 4.680110 GGATGTTGGACGTATGATCGTTAG 59.320 45.833 0.00 0.00 44.21 2.34
2655 9703 3.441163 TGTTGGACGTATGATCGTTAGC 58.559 45.455 0.00 0.00 44.21 3.09
2656 9704 3.129813 TGTTGGACGTATGATCGTTAGCT 59.870 43.478 0.00 0.00 44.21 3.32
2657 9705 4.336153 TGTTGGACGTATGATCGTTAGCTA 59.664 41.667 0.00 0.00 44.21 3.32
2658 9706 5.009310 TGTTGGACGTATGATCGTTAGCTAT 59.991 40.000 0.00 0.00 44.21 2.97
2659 9707 5.700722 TGGACGTATGATCGTTAGCTATT 57.299 39.130 0.00 0.00 44.21 1.73
2660 9708 6.806388 TGGACGTATGATCGTTAGCTATTA 57.194 37.500 0.00 0.00 44.21 0.98
2661 9709 7.387119 TGGACGTATGATCGTTAGCTATTAT 57.613 36.000 0.00 0.00 44.21 1.28
2662 9710 7.248437 TGGACGTATGATCGTTAGCTATTATG 58.752 38.462 0.00 0.00 44.21 1.90
2663 9711 6.691818 GGACGTATGATCGTTAGCTATTATGG 59.308 42.308 0.00 0.00 44.21 2.74
2664 9712 6.561614 ACGTATGATCGTTAGCTATTATGGG 58.438 40.000 0.00 0.00 41.37 4.00
2665 9713 6.152323 ACGTATGATCGTTAGCTATTATGGGT 59.848 38.462 0.00 0.00 41.37 4.51
2666 9714 6.472486 CGTATGATCGTTAGCTATTATGGGTG 59.528 42.308 0.00 0.00 0.00 4.61
2667 9715 4.566004 TGATCGTTAGCTATTATGGGTGC 58.434 43.478 0.00 0.00 0.00 5.01
2668 9716 3.021269 TCGTTAGCTATTATGGGTGCG 57.979 47.619 0.00 0.00 0.00 5.34
2669 9717 2.624364 TCGTTAGCTATTATGGGTGCGA 59.376 45.455 0.00 5.56 0.00 5.10
2670 9718 2.729882 CGTTAGCTATTATGGGTGCGAC 59.270 50.000 0.00 0.00 0.00 5.19
2671 9719 3.724374 GTTAGCTATTATGGGTGCGACA 58.276 45.455 0.00 0.00 0.00 4.35
2672 9720 2.533266 AGCTATTATGGGTGCGACAG 57.467 50.000 0.00 0.00 0.00 3.51
2673 9721 1.762957 AGCTATTATGGGTGCGACAGT 59.237 47.619 0.00 0.00 0.00 3.55
2674 9722 1.867233 GCTATTATGGGTGCGACAGTG 59.133 52.381 0.00 0.00 0.00 3.66
2675 9723 2.741878 GCTATTATGGGTGCGACAGTGT 60.742 50.000 0.00 0.00 0.00 3.55
2676 9724 2.489938 ATTATGGGTGCGACAGTGTT 57.510 45.000 0.00 0.00 0.00 3.32
2677 9725 1.518325 TTATGGGTGCGACAGTGTTG 58.482 50.000 6.11 6.11 0.00 3.33
2678 9726 0.682292 TATGGGTGCGACAGTGTTGA 59.318 50.000 15.07 0.00 0.00 3.18
2679 9727 0.036732 ATGGGTGCGACAGTGTTGAT 59.963 50.000 15.07 0.00 0.00 2.57
2680 9728 0.884259 TGGGTGCGACAGTGTTGATG 60.884 55.000 15.07 0.00 0.00 3.07
2681 9729 0.602638 GGGTGCGACAGTGTTGATGA 60.603 55.000 15.07 0.00 0.00 2.92
2682 9730 0.512952 GGTGCGACAGTGTTGATGAC 59.487 55.000 15.07 6.91 0.00 3.06
2683 9731 0.161658 GTGCGACAGTGTTGATGACG 59.838 55.000 15.07 5.06 38.54 4.35
2684 9732 0.031449 TGCGACAGTGTTGATGACGA 59.969 50.000 15.07 0.00 37.91 4.20
2685 9733 1.336795 TGCGACAGTGTTGATGACGAT 60.337 47.619 15.07 0.00 37.91 3.73
2686 9734 1.059692 GCGACAGTGTTGATGACGATG 59.940 52.381 15.07 0.00 37.91 3.84
2687 9735 2.328473 CGACAGTGTTGATGACGATGT 58.672 47.619 4.29 0.00 37.91 3.06
2688 9736 2.731451 CGACAGTGTTGATGACGATGTT 59.269 45.455 4.29 0.00 37.91 2.71
2689 9737 3.422214 CGACAGTGTTGATGACGATGTTG 60.422 47.826 4.29 0.00 37.91 3.33
2690 9738 2.807967 ACAGTGTTGATGACGATGTTGG 59.192 45.455 0.00 0.00 0.00 3.77
2691 9739 1.806542 AGTGTTGATGACGATGTTGGC 59.193 47.619 0.00 0.00 0.00 4.52
2692 9740 0.795698 TGTTGATGACGATGTTGGCG 59.204 50.000 0.00 0.00 0.00 5.69
2693 9741 1.075542 GTTGATGACGATGTTGGCGA 58.924 50.000 0.00 0.00 0.00 5.54
2694 9742 1.075542 TTGATGACGATGTTGGCGAC 58.924 50.000 0.00 0.00 0.00 5.19
2695 9743 1.075979 TGATGACGATGTTGGCGACG 61.076 55.000 0.00 0.00 0.00 5.12
2696 9744 0.800683 GATGACGATGTTGGCGACGA 60.801 55.000 0.00 0.00 0.00 4.20
2697 9745 0.179111 ATGACGATGTTGGCGACGAT 60.179 50.000 0.00 0.00 0.00 3.73
2698 9746 0.800683 TGACGATGTTGGCGACGATC 60.801 55.000 0.00 4.18 0.00 3.69
2699 9747 0.525668 GACGATGTTGGCGACGATCT 60.526 55.000 0.00 0.00 0.00 2.75
2700 9748 0.802222 ACGATGTTGGCGACGATCTG 60.802 55.000 0.00 4.67 0.00 2.90
2701 9749 1.638467 GATGTTGGCGACGATCTGC 59.362 57.895 0.00 0.00 0.00 4.26
2702 9750 0.807667 GATGTTGGCGACGATCTGCT 60.808 55.000 0.00 0.00 0.00 4.24
2703 9751 1.086067 ATGTTGGCGACGATCTGCTG 61.086 55.000 0.00 0.00 0.00 4.41
2704 9752 2.815211 TTGGCGACGATCTGCTGC 60.815 61.111 0.00 0.00 0.00 5.25
2705 9753 3.300934 TTGGCGACGATCTGCTGCT 62.301 57.895 0.00 0.00 0.00 4.24
2706 9754 3.260483 GGCGACGATCTGCTGCTG 61.260 66.667 0.00 0.00 0.00 4.41
2707 9755 2.202663 GCGACGATCTGCTGCTGA 60.203 61.111 11.69 11.69 0.00 4.26
2708 9756 2.512301 GCGACGATCTGCTGCTGAC 61.512 63.158 11.54 5.43 0.00 3.51
2709 9757 2.220224 CGACGATCTGCTGCTGACG 61.220 63.158 20.52 20.52 0.00 4.35
2710 9758 1.875813 GACGATCTGCTGCTGACGG 60.876 63.158 23.44 16.31 0.00 4.79
2717 9765 2.815211 GCTGCTGACGGCGATGAA 60.815 61.111 16.62 0.00 45.43 2.57
2718 9766 2.176273 GCTGCTGACGGCGATGAAT 61.176 57.895 16.62 0.00 45.43 2.57
2719 9767 0.875908 GCTGCTGACGGCGATGAATA 60.876 55.000 16.62 0.00 45.43 1.75
2720 9768 0.855349 CTGCTGACGGCGATGAATAC 59.145 55.000 16.62 0.00 45.43 1.89
2721 9769 0.869880 TGCTGACGGCGATGAATACG 60.870 55.000 16.62 0.00 45.43 3.06
2722 9770 0.594028 GCTGACGGCGATGAATACGA 60.594 55.000 16.62 0.00 0.00 3.43
2723 9771 1.121240 CTGACGGCGATGAATACGAC 58.879 55.000 16.62 0.00 35.25 4.34
2728 9776 2.046283 GGCGATGAATACGACGATGA 57.954 50.000 0.00 0.00 0.00 2.92
2729 9777 1.979469 GGCGATGAATACGACGATGAG 59.021 52.381 0.00 0.00 0.00 2.90
2730 9778 2.604855 GGCGATGAATACGACGATGAGT 60.605 50.000 0.00 0.00 0.00 3.41
2731 9779 3.364664 GGCGATGAATACGACGATGAGTA 60.365 47.826 0.00 0.00 0.00 2.59
2732 9780 3.841317 GCGATGAATACGACGATGAGTAG 59.159 47.826 0.00 0.00 0.00 2.57
2733 9781 3.841317 CGATGAATACGACGATGAGTAGC 59.159 47.826 0.00 0.00 0.00 3.58
2734 9782 4.610680 CGATGAATACGACGATGAGTAGCA 60.611 45.833 0.00 0.00 0.00 3.49
2735 9783 3.948851 TGAATACGACGATGAGTAGCAC 58.051 45.455 0.00 0.00 0.00 4.40
2736 9784 3.242969 TGAATACGACGATGAGTAGCACC 60.243 47.826 0.00 0.00 0.00 5.01
2737 9785 0.654160 TACGACGATGAGTAGCACCG 59.346 55.000 0.00 0.00 0.00 4.94
2738 9786 1.939785 CGACGATGAGTAGCACCGC 60.940 63.158 0.00 0.00 0.00 5.68
2739 9787 1.589196 GACGATGAGTAGCACCGCC 60.589 63.158 0.00 0.00 0.00 6.13
2740 9788 2.279517 CGATGAGTAGCACCGCCC 60.280 66.667 0.00 0.00 0.00 6.13
2741 9789 2.279517 GATGAGTAGCACCGCCCG 60.280 66.667 0.00 0.00 0.00 6.13
2742 9790 2.758327 ATGAGTAGCACCGCCCGA 60.758 61.111 0.00 0.00 0.00 5.14
2743 9791 2.955751 GATGAGTAGCACCGCCCGAC 62.956 65.000 0.00 0.00 0.00 4.79
2744 9792 3.450115 GAGTAGCACCGCCCGACT 61.450 66.667 0.00 0.00 0.00 4.18
2745 9793 2.995574 AGTAGCACCGCCCGACTT 60.996 61.111 0.00 0.00 0.00 3.01
2746 9794 2.813908 GTAGCACCGCCCGACTTG 60.814 66.667 0.00 0.00 0.00 3.16
2747 9795 4.077184 TAGCACCGCCCGACTTGG 62.077 66.667 0.00 0.00 37.55 3.61
2767 9815 4.496670 GGAAGACGACCCGTGATG 57.503 61.111 0.00 0.00 41.37 3.07
2768 9816 1.888018 GGAAGACGACCCGTGATGA 59.112 57.895 0.00 0.00 41.37 2.92
2769 9817 0.458025 GGAAGACGACCCGTGATGAC 60.458 60.000 0.00 0.00 41.37 3.06
2770 9818 0.797249 GAAGACGACCCGTGATGACG 60.797 60.000 0.00 0.00 41.37 4.35
2783 9831 3.996032 GTGATGACGAATTTGAGCAGTC 58.004 45.455 0.00 0.00 0.00 3.51
2784 9832 2.667969 TGATGACGAATTTGAGCAGTCG 59.332 45.455 0.00 0.00 39.37 4.18
2785 9833 0.790207 TGACGAATTTGAGCAGTCGC 59.210 50.000 0.00 0.00 36.99 5.19
2786 9834 0.246912 GACGAATTTGAGCAGTCGCG 60.247 55.000 0.00 0.00 45.49 5.87
2787 9835 1.578618 CGAATTTGAGCAGTCGCGC 60.579 57.895 0.00 0.00 45.49 6.86
2788 9836 1.497278 GAATTTGAGCAGTCGCGCA 59.503 52.632 8.75 0.00 46.96 6.09
2792 9840 2.810887 TGAGCAGTCGCGCACATC 60.811 61.111 8.75 5.71 43.53 3.06
2793 9841 3.906649 GAGCAGTCGCGCACATCG 61.907 66.667 8.75 0.00 45.49 3.84
2802 9850 3.262936 CGCACATCGCTTCCCAAA 58.737 55.556 0.00 0.00 39.08 3.28
2803 9851 1.578926 CGCACATCGCTTCCCAAAA 59.421 52.632 0.00 0.00 39.08 2.44
2804 9852 0.039617 CGCACATCGCTTCCCAAAAA 60.040 50.000 0.00 0.00 39.08 1.94
2805 9853 1.418373 GCACATCGCTTCCCAAAAAC 58.582 50.000 0.00 0.00 37.77 2.43
2806 9854 1.934849 GCACATCGCTTCCCAAAAACC 60.935 52.381 0.00 0.00 37.77 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 1737 5.069501 AGTTACTCAAACCCGCTACTTAG 57.930 43.478 0.00 0.00 39.03 2.18
555 3160 1.836802 TGCATGCACCATTCTGCTAA 58.163 45.000 18.46 0.00 38.07 3.09
744 4646 3.782443 CTACCCTCCACCCACCGC 61.782 72.222 0.00 0.00 0.00 5.68
745 4647 1.611261 TTCTACCCTCCACCCACCG 60.611 63.158 0.00 0.00 0.00 4.94
747 4649 1.602771 GCTTCTACCCTCCACCCAC 59.397 63.158 0.00 0.00 0.00 4.61
748 4650 1.615424 GGCTTCTACCCTCCACCCA 60.615 63.158 0.00 0.00 0.00 4.51
780 6895 2.691252 CCTACCCACTCCCCACCC 60.691 72.222 0.00 0.00 0.00 4.61
808 6923 0.110678 ATGGGAGAGCATGCTGATGG 59.889 55.000 28.27 0.00 0.00 3.51
812 6927 4.649692 ACTAATTATGGGAGAGCATGCTG 58.350 43.478 28.27 8.17 0.00 4.41
813 6928 4.989875 ACTAATTATGGGAGAGCATGCT 57.010 40.909 22.92 22.92 0.00 3.79
814 6929 6.396829 AAAACTAATTATGGGAGAGCATGC 57.603 37.500 10.51 10.51 0.00 4.06
839 6959 1.722034 AAGTTGGACTCTGAGGCAGA 58.278 50.000 13.47 0.00 38.25 4.26
896 7041 4.430007 ACTGCGATCTTTATAAGCACGAA 58.570 39.130 0.00 0.00 33.92 3.85
968 7117 1.604755 CGTCTTCCTCCCTGATACTCG 59.395 57.143 0.00 0.00 0.00 4.18
1356 7757 1.480219 CGCAACGAGAGGTAATCCGC 61.480 60.000 0.00 0.00 39.05 5.54
1446 8248 2.019668 GCTCTCTCCTCCTGCTTCGTA 61.020 57.143 0.00 0.00 0.00 3.43
1474 8276 1.381872 CGGACAGGGTCTCCTCCAT 60.382 63.158 0.00 0.00 42.67 3.41
1498 8300 3.618507 GCCATGACAGCTTCTAAGTGTCT 60.619 47.826 17.96 8.10 37.65 3.41
1648 8648 3.606662 CCTCGCCGGGTCGATGAT 61.607 66.667 2.18 0.00 37.87 2.45
1873 8918 2.482839 GCTACTCACAAGGCAGAGATCC 60.483 54.545 0.00 0.00 35.83 3.36
1905 8952 8.910944 ACTTAGTAGTAACAGTTCAACTCTTGA 58.089 33.333 0.00 0.00 33.08 3.02
2196 9244 4.603094 TGTGAGGGAGTAGTGATTCCTA 57.397 45.455 0.00 0.00 32.04 2.94
2572 9620 6.692486 CATGATACTAGTTATGACACTCCCC 58.308 44.000 0.00 0.00 0.00 4.81
2579 9627 8.570096 TTGTTACGCATGATACTAGTTATGAC 57.430 34.615 0.00 0.00 0.00 3.06
2609 9657 5.304357 TCCTCTGTTCATGTCTGTTTCTACA 59.696 40.000 0.00 0.00 0.00 2.74
2610 9658 5.784177 TCCTCTGTTCATGTCTGTTTCTAC 58.216 41.667 0.00 0.00 0.00 2.59
2611 9659 6.014242 ACATCCTCTGTTCATGTCTGTTTCTA 60.014 38.462 0.00 0.00 32.90 2.10
2612 9660 4.963318 TCCTCTGTTCATGTCTGTTTCT 57.037 40.909 0.00 0.00 0.00 2.52
2613 9661 4.999950 ACATCCTCTGTTCATGTCTGTTTC 59.000 41.667 0.00 0.00 32.90 2.78
2614 9662 4.978099 ACATCCTCTGTTCATGTCTGTTT 58.022 39.130 0.00 0.00 32.90 2.83
2615 9663 4.630644 ACATCCTCTGTTCATGTCTGTT 57.369 40.909 0.00 0.00 32.90 3.16
2616 9664 4.321718 CAACATCCTCTGTTCATGTCTGT 58.678 43.478 0.00 0.00 44.99 3.41
2617 9665 3.688185 CCAACATCCTCTGTTCATGTCTG 59.312 47.826 0.00 0.00 44.99 3.51
2618 9666 3.584406 TCCAACATCCTCTGTTCATGTCT 59.416 43.478 0.00 0.00 44.99 3.41
2619 9667 3.686726 GTCCAACATCCTCTGTTCATGTC 59.313 47.826 0.00 0.00 44.99 3.06
2620 9668 3.679389 GTCCAACATCCTCTGTTCATGT 58.321 45.455 0.00 0.00 44.99 3.21
2621 9669 2.674852 CGTCCAACATCCTCTGTTCATG 59.325 50.000 0.00 0.00 44.99 3.07
2622 9670 2.303022 ACGTCCAACATCCTCTGTTCAT 59.697 45.455 0.00 0.00 44.99 2.57
2623 9671 1.691976 ACGTCCAACATCCTCTGTTCA 59.308 47.619 0.00 0.00 44.99 3.18
2624 9672 2.457366 ACGTCCAACATCCTCTGTTC 57.543 50.000 0.00 0.00 44.99 3.18
2626 9674 3.096852 TCATACGTCCAACATCCTCTGT 58.903 45.455 0.00 0.00 40.84 3.41
2627 9675 3.801114 TCATACGTCCAACATCCTCTG 57.199 47.619 0.00 0.00 0.00 3.35
2628 9676 3.004839 CGATCATACGTCCAACATCCTCT 59.995 47.826 0.00 0.00 0.00 3.69
2629 9677 3.243434 ACGATCATACGTCCAACATCCTC 60.243 47.826 0.00 0.00 43.02 3.71
2630 9678 2.693591 ACGATCATACGTCCAACATCCT 59.306 45.455 0.00 0.00 43.02 3.24
2631 9679 3.093717 ACGATCATACGTCCAACATCC 57.906 47.619 0.00 0.00 43.02 3.51
2632 9680 4.148348 GCTAACGATCATACGTCCAACATC 59.852 45.833 0.00 0.00 45.83 3.06
2633 9681 4.049186 GCTAACGATCATACGTCCAACAT 58.951 43.478 0.00 0.00 45.83 2.71
2634 9682 3.129813 AGCTAACGATCATACGTCCAACA 59.870 43.478 0.00 0.00 45.83 3.33
2635 9683 3.703420 AGCTAACGATCATACGTCCAAC 58.297 45.455 0.00 0.00 45.83 3.77
2636 9684 5.700722 ATAGCTAACGATCATACGTCCAA 57.299 39.130 0.00 0.00 45.83 3.53
2637 9685 5.700722 AATAGCTAACGATCATACGTCCA 57.299 39.130 0.00 0.00 45.83 4.02
2638 9686 6.691818 CCATAATAGCTAACGATCATACGTCC 59.308 42.308 0.00 0.00 45.83 4.79
2639 9687 6.691818 CCCATAATAGCTAACGATCATACGTC 59.308 42.308 0.00 0.00 45.83 4.34
2641 9689 6.472486 CACCCATAATAGCTAACGATCATACG 59.528 42.308 0.00 0.00 39.31 3.06
2642 9690 6.255887 GCACCCATAATAGCTAACGATCATAC 59.744 42.308 0.00 0.00 0.00 2.39
2643 9691 6.338146 GCACCCATAATAGCTAACGATCATA 58.662 40.000 0.00 0.00 0.00 2.15
2644 9692 5.178797 GCACCCATAATAGCTAACGATCAT 58.821 41.667 0.00 0.00 0.00 2.45
2645 9693 4.566004 GCACCCATAATAGCTAACGATCA 58.434 43.478 0.00 0.00 0.00 2.92
2646 9694 3.612860 CGCACCCATAATAGCTAACGATC 59.387 47.826 0.00 0.00 0.00 3.69
2647 9695 3.257375 TCGCACCCATAATAGCTAACGAT 59.743 43.478 0.00 0.00 0.00 3.73
2648 9696 2.624364 TCGCACCCATAATAGCTAACGA 59.376 45.455 0.00 0.00 0.00 3.85
2649 9697 2.729882 GTCGCACCCATAATAGCTAACG 59.270 50.000 0.00 0.00 0.00 3.18
2650 9698 3.724374 TGTCGCACCCATAATAGCTAAC 58.276 45.455 0.00 0.00 0.00 2.34
2651 9699 3.386726 ACTGTCGCACCCATAATAGCTAA 59.613 43.478 0.00 0.00 0.00 3.09
2652 9700 2.963101 ACTGTCGCACCCATAATAGCTA 59.037 45.455 0.00 0.00 0.00 3.32
2653 9701 1.762957 ACTGTCGCACCCATAATAGCT 59.237 47.619 0.00 0.00 0.00 3.32
2654 9702 1.867233 CACTGTCGCACCCATAATAGC 59.133 52.381 0.00 0.00 0.00 2.97
2655 9703 3.179443 ACACTGTCGCACCCATAATAG 57.821 47.619 0.00 0.00 0.00 1.73
2656 9704 3.055747 TCAACACTGTCGCACCCATAATA 60.056 43.478 0.00 0.00 0.00 0.98
2657 9705 2.083774 CAACACTGTCGCACCCATAAT 58.916 47.619 0.00 0.00 0.00 1.28
2658 9706 1.070914 TCAACACTGTCGCACCCATAA 59.929 47.619 0.00 0.00 0.00 1.90
2659 9707 0.682292 TCAACACTGTCGCACCCATA 59.318 50.000 0.00 0.00 0.00 2.74
2660 9708 0.036732 ATCAACACTGTCGCACCCAT 59.963 50.000 0.00 0.00 0.00 4.00
2661 9709 0.884259 CATCAACACTGTCGCACCCA 60.884 55.000 0.00 0.00 0.00 4.51
2662 9710 0.602638 TCATCAACACTGTCGCACCC 60.603 55.000 0.00 0.00 0.00 4.61
2663 9711 0.512952 GTCATCAACACTGTCGCACC 59.487 55.000 0.00 0.00 0.00 5.01
2664 9712 0.161658 CGTCATCAACACTGTCGCAC 59.838 55.000 0.00 0.00 0.00 5.34
2665 9713 0.031449 TCGTCATCAACACTGTCGCA 59.969 50.000 0.00 0.00 0.00 5.10
2666 9714 1.059692 CATCGTCATCAACACTGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2667 9715 2.328473 ACATCGTCATCAACACTGTCG 58.672 47.619 0.00 0.00 0.00 4.35
2668 9716 3.120546 CCAACATCGTCATCAACACTGTC 60.121 47.826 0.00 0.00 0.00 3.51
2669 9717 2.807967 CCAACATCGTCATCAACACTGT 59.192 45.455 0.00 0.00 0.00 3.55
2670 9718 2.413239 GCCAACATCGTCATCAACACTG 60.413 50.000 0.00 0.00 0.00 3.66
2671 9719 1.806542 GCCAACATCGTCATCAACACT 59.193 47.619 0.00 0.00 0.00 3.55
2672 9720 1.464023 CGCCAACATCGTCATCAACAC 60.464 52.381 0.00 0.00 0.00 3.32
2673 9721 0.795698 CGCCAACATCGTCATCAACA 59.204 50.000 0.00 0.00 0.00 3.33
2674 9722 1.075542 TCGCCAACATCGTCATCAAC 58.924 50.000 0.00 0.00 0.00 3.18
2675 9723 1.075542 GTCGCCAACATCGTCATCAA 58.924 50.000 0.00 0.00 0.00 2.57
2676 9724 1.075979 CGTCGCCAACATCGTCATCA 61.076 55.000 0.00 0.00 0.00 3.07
2677 9725 0.800683 TCGTCGCCAACATCGTCATC 60.801 55.000 0.00 0.00 0.00 2.92
2678 9726 0.179111 ATCGTCGCCAACATCGTCAT 60.179 50.000 0.00 0.00 0.00 3.06
2679 9727 0.800683 GATCGTCGCCAACATCGTCA 60.801 55.000 0.00 0.00 0.00 4.35
2680 9728 0.525668 AGATCGTCGCCAACATCGTC 60.526 55.000 0.00 0.00 0.00 4.20
2681 9729 0.802222 CAGATCGTCGCCAACATCGT 60.802 55.000 0.00 0.00 0.00 3.73
2682 9730 1.920051 CAGATCGTCGCCAACATCG 59.080 57.895 0.00 0.00 0.00 3.84
2683 9731 0.807667 AGCAGATCGTCGCCAACATC 60.808 55.000 1.78 0.00 0.00 3.06
2684 9732 1.086067 CAGCAGATCGTCGCCAACAT 61.086 55.000 1.78 0.00 0.00 2.71
2685 9733 1.737735 CAGCAGATCGTCGCCAACA 60.738 57.895 1.78 0.00 0.00 3.33
2686 9734 3.084579 CAGCAGATCGTCGCCAAC 58.915 61.111 1.78 0.00 0.00 3.77
2687 9735 2.815211 GCAGCAGATCGTCGCCAA 60.815 61.111 1.78 0.00 0.00 4.52
2688 9736 3.763356 AGCAGCAGATCGTCGCCA 61.763 61.111 0.00 0.00 0.00 5.69
2689 9737 3.260483 CAGCAGCAGATCGTCGCC 61.260 66.667 0.00 0.00 0.00 5.54
2690 9738 2.202663 TCAGCAGCAGATCGTCGC 60.203 61.111 0.00 0.00 0.00 5.19
2691 9739 2.220224 CGTCAGCAGCAGATCGTCG 61.220 63.158 0.00 0.00 0.00 5.12
2692 9740 1.875813 CCGTCAGCAGCAGATCGTC 60.876 63.158 0.00 0.00 0.00 4.20
2693 9741 2.182791 CCGTCAGCAGCAGATCGT 59.817 61.111 0.00 0.00 0.00 3.73
2694 9742 3.260483 GCCGTCAGCAGCAGATCG 61.260 66.667 0.00 0.00 42.97 3.69
2695 9743 2.967929 ATCGCCGTCAGCAGCAGATC 62.968 60.000 0.00 0.00 44.04 2.75
2696 9744 3.086391 ATCGCCGTCAGCAGCAGAT 62.086 57.895 0.00 0.00 44.04 2.90
2697 9745 3.763356 ATCGCCGTCAGCAGCAGA 61.763 61.111 0.00 0.00 44.04 4.26
2698 9746 3.561213 CATCGCCGTCAGCAGCAG 61.561 66.667 0.00 0.00 44.04 4.24
2699 9747 2.857575 ATTCATCGCCGTCAGCAGCA 62.858 55.000 0.00 0.00 44.04 4.41
2700 9748 0.875908 TATTCATCGCCGTCAGCAGC 60.876 55.000 0.00 0.00 44.04 5.25
2701 9749 0.855349 GTATTCATCGCCGTCAGCAG 59.145 55.000 0.00 0.00 44.04 4.24
2702 9750 0.869880 CGTATTCATCGCCGTCAGCA 60.870 55.000 0.00 0.00 44.04 4.41
2703 9751 0.594028 TCGTATTCATCGCCGTCAGC 60.594 55.000 0.00 0.00 38.52 4.26
2704 9752 1.121240 GTCGTATTCATCGCCGTCAG 58.879 55.000 0.00 0.00 0.00 3.51
2705 9753 0.590481 CGTCGTATTCATCGCCGTCA 60.590 55.000 0.00 0.00 0.00 4.35
2706 9754 0.316442 TCGTCGTATTCATCGCCGTC 60.316 55.000 0.00 0.00 31.87 4.79
2707 9755 0.309922 ATCGTCGTATTCATCGCCGT 59.690 50.000 0.00 0.00 31.87 5.68
2708 9756 0.702924 CATCGTCGTATTCATCGCCG 59.297 55.000 0.00 0.00 0.00 6.46
2709 9757 1.979469 CTCATCGTCGTATTCATCGCC 59.021 52.381 0.00 0.00 0.00 5.54
2710 9758 2.651701 ACTCATCGTCGTATTCATCGC 58.348 47.619 0.00 0.00 0.00 4.58
2711 9759 3.841317 GCTACTCATCGTCGTATTCATCG 59.159 47.826 0.00 0.00 0.00 3.84
2712 9760 4.613448 GTGCTACTCATCGTCGTATTCATC 59.387 45.833 0.00 0.00 0.00 2.92
2713 9761 4.537965 GTGCTACTCATCGTCGTATTCAT 58.462 43.478 0.00 0.00 0.00 2.57
2714 9762 3.242969 GGTGCTACTCATCGTCGTATTCA 60.243 47.826 0.00 0.00 0.00 2.57
2715 9763 3.298317 GGTGCTACTCATCGTCGTATTC 58.702 50.000 0.00 0.00 0.00 1.75
2716 9764 2.286831 CGGTGCTACTCATCGTCGTATT 60.287 50.000 0.00 0.00 43.96 1.89
2717 9765 1.263484 CGGTGCTACTCATCGTCGTAT 59.737 52.381 0.00 0.00 43.96 3.06
2718 9766 0.654160 CGGTGCTACTCATCGTCGTA 59.346 55.000 0.00 0.00 43.96 3.43
2719 9767 1.428219 CGGTGCTACTCATCGTCGT 59.572 57.895 0.00 0.00 43.96 4.34
2720 9768 4.286967 CGGTGCTACTCATCGTCG 57.713 61.111 0.00 0.00 43.96 5.12
2724 9772 2.279517 CGGGCGGTGCTACTCATC 60.280 66.667 0.00 0.00 0.00 2.92
2725 9773 2.758327 TCGGGCGGTGCTACTCAT 60.758 61.111 0.00 0.00 0.00 2.90
2726 9774 3.755628 GTCGGGCGGTGCTACTCA 61.756 66.667 0.00 0.00 0.00 3.41
2727 9775 3.003113 AAGTCGGGCGGTGCTACTC 62.003 63.158 0.00 0.00 0.00 2.59
2728 9776 2.995574 AAGTCGGGCGGTGCTACT 60.996 61.111 0.00 0.00 0.00 2.57
2729 9777 2.813908 CAAGTCGGGCGGTGCTAC 60.814 66.667 0.00 0.00 0.00 3.58
2730 9778 4.077184 CCAAGTCGGGCGGTGCTA 62.077 66.667 0.00 0.00 0.00 3.49
2737 9785 2.434359 CTTCCGTCCAAGTCGGGC 60.434 66.667 4.58 0.00 46.82 6.13
2738 9786 1.080025 GTCTTCCGTCCAAGTCGGG 60.080 63.158 4.58 0.00 46.82 5.14
2740 9788 0.728466 GTCGTCTTCCGTCCAAGTCG 60.728 60.000 0.00 0.00 36.60 4.18
2741 9789 0.388263 GGTCGTCTTCCGTCCAAGTC 60.388 60.000 0.00 0.00 43.20 3.01
2742 9790 1.664306 GGTCGTCTTCCGTCCAAGT 59.336 57.895 0.00 0.00 43.20 3.16
2743 9791 1.080025 GGGTCGTCTTCCGTCCAAG 60.080 63.158 0.00 0.00 45.15 3.61
2744 9792 2.922950 CGGGTCGTCTTCCGTCCAA 61.923 63.158 0.00 0.00 45.15 3.53
2745 9793 3.367743 CGGGTCGTCTTCCGTCCA 61.368 66.667 0.00 0.00 45.15 4.02
2750 9798 0.458025 GTCATCACGGGTCGTCTTCC 60.458 60.000 0.00 0.00 38.32 3.46
2751 9799 0.797249 CGTCATCACGGGTCGTCTTC 60.797 60.000 0.00 0.00 42.73 2.87
2752 9800 1.211969 CGTCATCACGGGTCGTCTT 59.788 57.895 0.00 0.00 42.73 3.01
2753 9801 1.239296 TTCGTCATCACGGGTCGTCT 61.239 55.000 0.00 0.00 46.70 4.18
2754 9802 0.179145 ATTCGTCATCACGGGTCGTC 60.179 55.000 0.00 0.00 46.70 4.20
2755 9803 0.245539 AATTCGTCATCACGGGTCGT 59.754 50.000 0.00 0.00 46.70 4.34
2756 9804 1.060553 CAAATTCGTCATCACGGGTCG 59.939 52.381 0.00 0.00 46.70 4.79
2757 9805 2.343101 TCAAATTCGTCATCACGGGTC 58.657 47.619 0.00 0.00 46.70 4.46
2758 9806 2.346803 CTCAAATTCGTCATCACGGGT 58.653 47.619 0.00 0.00 46.70 5.28
2759 9807 1.062587 GCTCAAATTCGTCATCACGGG 59.937 52.381 0.00 0.00 46.70 5.28
2760 9808 1.731709 TGCTCAAATTCGTCATCACGG 59.268 47.619 0.00 0.00 46.70 4.94
2762 9810 3.482598 CGACTGCTCAAATTCGTCATCAC 60.483 47.826 0.00 0.00 0.00 3.06
2763 9811 2.667969 CGACTGCTCAAATTCGTCATCA 59.332 45.455 0.00 0.00 0.00 3.07
2764 9812 2.535732 GCGACTGCTCAAATTCGTCATC 60.536 50.000 0.00 0.00 38.39 2.92
2765 9813 1.394917 GCGACTGCTCAAATTCGTCAT 59.605 47.619 0.00 0.00 38.39 3.06
2766 9814 0.790207 GCGACTGCTCAAATTCGTCA 59.210 50.000 0.00 0.00 38.39 4.35
2767 9815 0.246912 CGCGACTGCTCAAATTCGTC 60.247 55.000 0.00 0.00 39.65 4.20
2768 9816 1.781555 CGCGACTGCTCAAATTCGT 59.218 52.632 0.00 0.00 39.65 3.85
2769 9817 1.578618 GCGCGACTGCTCAAATTCG 60.579 57.895 12.10 0.00 39.65 3.34
2770 9818 0.790866 GTGCGCGACTGCTCAAATTC 60.791 55.000 12.10 0.00 37.61 2.17
2771 9819 1.207593 GTGCGCGACTGCTCAAATT 59.792 52.632 12.10 0.00 37.61 1.82
2772 9820 1.300971 ATGTGCGCGACTGCTCAAAT 61.301 50.000 12.10 0.00 41.15 2.32
2773 9821 1.900585 GATGTGCGCGACTGCTCAAA 61.901 55.000 12.10 0.00 41.15 2.69
2774 9822 2.357396 ATGTGCGCGACTGCTCAA 60.357 55.556 12.10 0.00 41.15 3.02
2775 9823 2.810887 GATGTGCGCGACTGCTCA 60.811 61.111 12.10 0.00 41.91 4.26
2776 9824 3.906649 CGATGTGCGCGACTGCTC 61.907 66.667 12.10 0.00 39.65 4.26
2786 9834 1.418373 GTTTTTGGGAAGCGATGTGC 58.582 50.000 0.00 0.00 46.98 4.57
2787 9835 2.064573 GGTTTTTGGGAAGCGATGTG 57.935 50.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.