Multiple sequence alignment - TraesCS7D01G030300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G030300 chr7D 100.000 2546 0 0 604 3149 15913689 15911144 0.000000e+00 4702.0
1 TraesCS7D01G030300 chr7D 88.953 1032 99 8 869 1886 15853358 15852328 0.000000e+00 1260.0
2 TraesCS7D01G030300 chr7D 100.000 263 0 0 1 263 15914292 15914030 1.310000e-133 486.0
3 TraesCS7D01G030300 chr7D 75.364 1031 200 34 1019 2030 16004439 16003444 6.200000e-122 448.0
4 TraesCS7D01G030300 chr7D 85.279 394 53 3 1881 2272 15840990 15840600 4.890000e-108 401.0
5 TraesCS7D01G030300 chr7A 92.222 2507 116 24 604 3052 14821855 14819370 0.000000e+00 3476.0
6 TraesCS7D01G030300 chr7A 87.201 961 118 3 1314 2272 14773843 14772886 0.000000e+00 1088.0
7 TraesCS7D01G030300 chr7A 89.065 759 65 10 869 1610 5150952 5151709 0.000000e+00 926.0
8 TraesCS7D01G030300 chr7A 86.377 668 84 5 1608 2272 5153002 5153665 0.000000e+00 723.0
9 TraesCS7D01G030300 chr7A 79.858 988 184 12 1219 2203 91294492 91295467 0.000000e+00 708.0
10 TraesCS7D01G030300 chr7A 85.463 626 86 3 1649 2272 14745624 14746246 0.000000e+00 647.0
11 TraesCS7D01G030300 chr7A 80.664 693 124 10 1358 2045 14896183 14895496 2.150000e-146 529.0
12 TraesCS7D01G030300 chr7A 85.204 392 43 6 931 1315 14774466 14774083 3.810000e-104 388.0
13 TraesCS7D01G030300 chr7A 86.622 299 33 2 931 1222 5171402 5171700 1.090000e-84 324.0
14 TraesCS7D01G030300 chr7A 82.264 265 28 6 1 263 14822121 14821874 8.850000e-51 211.0
15 TraesCS7D01G030300 chr7A 82.264 265 28 6 1 263 14826049 14825802 8.850000e-51 211.0
16 TraesCS7D01G030300 chr7A 83.857 223 24 6 604 824 14825783 14825571 5.330000e-48 202.0
17 TraesCS7D01G030300 chr3D 93.426 2221 107 21 775 2961 584931536 584933751 0.000000e+00 3256.0
18 TraesCS7D01G030300 chr3D 84.358 179 6 6 1 179 584931186 584931342 4.210000e-34 156.0
19 TraesCS7D01G030300 chr4A 94.083 2045 110 5 927 2969 719052465 719054500 0.000000e+00 3096.0
20 TraesCS7D01G030300 chr4A 89.229 1012 108 1 998 2009 719140752 719141762 0.000000e+00 1264.0
21 TraesCS7D01G030300 chr4A 89.744 78 4 3 3075 3149 719054589 719054665 2.590000e-16 97.1
22 TraesCS7D01G030300 chr7B 88.359 1280 116 17 604 1864 711385651 711384386 0.000000e+00 1507.0
23 TraesCS7D01G030300 chr7B 93.881 572 34 1 1856 2426 711364133 711363562 0.000000e+00 861.0
24 TraesCS7D01G030300 chr7B 92.268 194 13 2 2593 2784 711363234 711363041 1.110000e-69 274.0
25 TraesCS7D01G030300 chr7B 92.896 183 12 1 2425 2606 711363458 711363276 6.700000e-67 265.0
26 TraesCS7D01G030300 chr7B 96.552 87 3 0 2878 2964 711362989 711362903 9.100000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G030300 chr7D 15911144 15914292 3148 True 2594.00 4702 100.00000 1 3149 2 chr7D.!!$R4 3148
1 TraesCS7D01G030300 chr7D 15852328 15853358 1030 True 1260.00 1260 88.95300 869 1886 1 chr7D.!!$R2 1017
2 TraesCS7D01G030300 chr7D 16003444 16004439 995 True 448.00 448 75.36400 1019 2030 1 chr7D.!!$R3 1011
3 TraesCS7D01G030300 chr7A 14819370 14826049 6679 True 1025.00 3476 85.15175 1 3052 4 chr7A.!!$R3 3051
4 TraesCS7D01G030300 chr7A 5150952 5153665 2713 False 824.50 926 87.72100 869 2272 2 chr7A.!!$F4 1403
5 TraesCS7D01G030300 chr7A 14772886 14774466 1580 True 738.00 1088 86.20250 931 2272 2 chr7A.!!$R2 1341
6 TraesCS7D01G030300 chr7A 91294492 91295467 975 False 708.00 708 79.85800 1219 2203 1 chr7A.!!$F3 984
7 TraesCS7D01G030300 chr7A 14745624 14746246 622 False 647.00 647 85.46300 1649 2272 1 chr7A.!!$F2 623
8 TraesCS7D01G030300 chr7A 14895496 14896183 687 True 529.00 529 80.66400 1358 2045 1 chr7A.!!$R1 687
9 TraesCS7D01G030300 chr3D 584931186 584933751 2565 False 1706.00 3256 88.89200 1 2961 2 chr3D.!!$F1 2960
10 TraesCS7D01G030300 chr4A 719052465 719054665 2200 False 1596.55 3096 91.91350 927 3149 2 chr4A.!!$F2 2222
11 TraesCS7D01G030300 chr4A 719140752 719141762 1010 False 1264.00 1264 89.22900 998 2009 1 chr4A.!!$F1 1011
12 TraesCS7D01G030300 chr7B 711384386 711385651 1265 True 1507.00 1507 88.35900 604 1864 1 chr7B.!!$R1 1260
13 TraesCS7D01G030300 chr7B 711362903 711364133 1230 True 386.25 861 93.89925 1856 2964 4 chr7B.!!$R2 1108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 629 0.036306 AGGCCTTGTTTCACCGGTAG 59.964 55.0 6.87 0.0 0.0 3.18 F
1362 5584 0.934496 TTCGTTTCAGTGGTGCTTCG 59.066 50.0 0.00 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 5787 0.759346 AGAGCGTCCCACCCAATATC 59.241 55.0 0.00 0.0 0.00 1.63 R
3066 8781 0.109342 GGATGCATCTCCCATCGGTT 59.891 55.0 25.28 0.0 39.92 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 2.863137 GAGATGCAACGATTCAGAGACC 59.137 50.000 0.00 0.00 0.00 3.85
70 73 2.419297 GCAACGATTCAGAGACCATCCT 60.419 50.000 0.00 0.00 0.00 3.24
75 78 4.279671 ACGATTCAGAGACCATCCTATCAC 59.720 45.833 0.00 0.00 0.00 3.06
81 84 4.100653 CAGAGACCATCCTATCACACATGT 59.899 45.833 0.00 0.00 0.00 3.21
179 182 6.321717 TCGTGCATTGTTTCCTGAATAATTC 58.678 36.000 0.00 0.00 27.87 2.17
180 183 5.227805 CGTGCATTGTTTCCTGAATAATTCG 59.772 40.000 0.00 0.00 27.87 3.34
195 198 2.604046 ATTCGCTGTGTATCTCCACC 57.396 50.000 0.00 0.00 34.35 4.61
199 202 0.103208 GCTGTGTATCTCCACCGAGG 59.897 60.000 0.00 0.00 36.70 4.63
200 203 0.747255 CTGTGTATCTCCACCGAGGG 59.253 60.000 0.00 0.00 36.70 4.30
212 215 2.028190 CGAGGGCGCAATCGATCT 59.972 61.111 24.05 3.48 41.40 2.75
236 239 4.097135 TCTGCGTTCATTTTGTTCCTTTCA 59.903 37.500 0.00 0.00 0.00 2.69
251 254 0.758310 TTTCAATGCCACCACAGCCA 60.758 50.000 0.00 0.00 0.00 4.75
254 257 1.063792 TCAATGCCACCACAGCCATAT 60.064 47.619 0.00 0.00 0.00 1.78
625 628 0.250553 CAGGCCTTGTTTCACCGGTA 60.251 55.000 6.87 0.00 0.00 4.02
626 629 0.036306 AGGCCTTGTTTCACCGGTAG 59.964 55.000 6.87 0.00 0.00 3.18
627 630 0.958876 GGCCTTGTTTCACCGGTAGG 60.959 60.000 6.87 11.11 45.13 3.18
635 640 3.579586 TGTTTCACCGGTAGGAGTACAAT 59.420 43.478 6.87 0.00 41.02 2.71
682 687 7.778382 AGTTCATGGAGTGTTTAAAGGTTTAGT 59.222 33.333 0.00 0.00 0.00 2.24
683 688 8.410912 GTTCATGGAGTGTTTAAAGGTTTAGTT 58.589 33.333 0.00 0.00 0.00 2.24
705 710 4.095400 GGGGAGGCTGGAGGAGGA 62.095 72.222 0.00 0.00 0.00 3.71
706 711 2.445654 GGGAGGCTGGAGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
707 712 2.693017 GGAGGCTGGAGGAGGAGA 59.307 66.667 0.00 0.00 0.00 3.71
708 713 1.457455 GGAGGCTGGAGGAGGAGAG 60.457 68.421 0.00 0.00 0.00 3.20
709 714 1.457455 GAGGCTGGAGGAGGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
793 4727 7.002879 AGCAGCAATGTATTAGATGGAAATCT 58.997 34.615 0.00 0.00 34.80 2.40
794 4728 7.040617 AGCAGCAATGTATTAGATGGAAATCTG 60.041 37.037 0.00 0.00 32.36 2.90
824 4758 2.609459 CGAATCTTGCCAGTTTATCGCT 59.391 45.455 0.00 0.00 0.00 4.93
883 4842 5.602561 TCTGTGCCTATTATGTACTGGTCAT 59.397 40.000 0.00 0.00 0.00 3.06
901 4860 9.167311 ACTGGTCATTCTGTTATATTTTCTGTC 57.833 33.333 0.00 0.00 0.00 3.51
911 4870 8.196802 TGTTATATTTTCTGTCATTCAGTCCG 57.803 34.615 0.00 0.00 43.97 4.79
916 4875 5.462530 TTTCTGTCATTCAGTCCGTTCTA 57.537 39.130 0.00 0.00 43.97 2.10
917 4876 5.462530 TTCTGTCATTCAGTCCGTTCTAA 57.537 39.130 0.00 0.00 43.97 2.10
920 4879 7.348080 TCTGTCATTCAGTCCGTTCTAATAT 57.652 36.000 0.00 0.00 43.97 1.28
921 4880 7.203218 TCTGTCATTCAGTCCGTTCTAATATG 58.797 38.462 0.00 0.00 43.97 1.78
922 4881 6.873997 TGTCATTCAGTCCGTTCTAATATGT 58.126 36.000 0.00 0.00 0.00 2.29
923 4882 6.756542 TGTCATTCAGTCCGTTCTAATATGTG 59.243 38.462 0.00 0.00 0.00 3.21
924 4883 6.757010 GTCATTCAGTCCGTTCTAATATGTGT 59.243 38.462 0.00 0.00 0.00 3.72
926 4885 6.525578 TTCAGTCCGTTCTAATATGTGTCT 57.474 37.500 0.00 0.00 0.00 3.41
927 4886 6.525578 TCAGTCCGTTCTAATATGTGTCTT 57.474 37.500 0.00 0.00 0.00 3.01
928 4887 6.931838 TCAGTCCGTTCTAATATGTGTCTTT 58.068 36.000 0.00 0.00 0.00 2.52
929 4888 6.811665 TCAGTCCGTTCTAATATGTGTCTTTG 59.188 38.462 0.00 0.00 0.00 2.77
996 4972 2.226330 TGCTACATTTTTGTCACCGCT 58.774 42.857 0.00 0.00 0.00 5.52
1054 5031 2.550606 GAGGGTCTGCTGTACTCTATCG 59.449 54.545 0.00 0.00 0.00 2.92
1347 5569 4.386711 CAAGTCCTCTAAAAGGGTTTCGT 58.613 43.478 0.00 0.00 46.23 3.85
1362 5584 0.934496 TTCGTTTCAGTGGTGCTTCG 59.066 50.000 0.00 0.00 0.00 3.79
1565 5787 0.938713 TTTTGGCGTGTTGGTAGTCG 59.061 50.000 0.00 0.00 0.00 4.18
1581 5803 0.878961 GTCGATATTGGGTGGGACGC 60.879 60.000 0.00 0.00 38.67 5.19
1631 7148 1.896660 TGGTCTTCAAAGGGCGTGC 60.897 57.895 0.00 0.00 0.00 5.34
1968 7487 1.435168 GAGATATGGGGAGGGAGGAGT 59.565 57.143 0.00 0.00 0.00 3.85
1998 7517 6.323266 CGTATACTGCTATAACCATGACTCC 58.677 44.000 0.56 0.00 0.00 3.85
2073 7592 7.093112 CCCACCTCCAAATTTAATCCAAACATA 60.093 37.037 0.00 0.00 0.00 2.29
2212 7739 8.321353 TGGAGCATGTTCTTCTCTAAAGATTTA 58.679 33.333 9.57 0.00 0.00 1.40
2449 8084 7.961325 ATTTTGTTAGTTAGCAACATTTGGG 57.039 32.000 0.00 0.00 35.89 4.12
2513 8148 4.697514 TCTTTTCTCAATGCTAGATCCCG 58.302 43.478 0.00 0.00 0.00 5.14
2630 8322 6.552859 TCATATGCAATGGTACCGTTTATG 57.447 37.500 21.32 21.32 0.00 1.90
2704 8398 7.656412 TGCATTTCACACATTACTTACATGTT 58.344 30.769 2.30 0.00 32.25 2.71
2743 8438 8.731605 CACTAGTGGCTTATAAATCTCTATCGA 58.268 37.037 15.49 0.00 0.00 3.59
2775 8470 0.684153 AATGGCCGGTTCAATCCAGG 60.684 55.000 1.90 0.00 31.36 4.45
2818 8513 1.738099 GCCGCACAGTCTCGTGAAT 60.738 57.895 6.61 0.00 39.34 2.57
2821 8516 1.269166 CGCACAGTCTCGTGAATACC 58.731 55.000 6.61 0.00 39.34 2.73
2999 8714 5.467399 CCAACATCAGCACACAAATTTGAAT 59.533 36.000 24.64 8.98 0.00 2.57
3020 8735 1.002868 GCTGTCACCTGCTGGATGT 60.003 57.895 17.64 0.00 37.04 3.06
3057 8772 3.367932 ACAGCGTCGTTAAGATGTTCATG 59.632 43.478 0.00 0.00 38.14 3.07
3058 8773 2.930040 AGCGTCGTTAAGATGTTCATGG 59.070 45.455 0.00 0.00 38.14 3.66
3059 8774 2.927477 GCGTCGTTAAGATGTTCATGGA 59.073 45.455 0.00 0.00 38.14 3.41
3060 8775 3.000322 GCGTCGTTAAGATGTTCATGGAG 60.000 47.826 0.00 0.00 38.14 3.86
3061 8776 3.551890 CGTCGTTAAGATGTTCATGGAGG 59.448 47.826 0.00 0.00 0.00 4.30
3062 8777 4.504858 GTCGTTAAGATGTTCATGGAGGT 58.495 43.478 0.00 0.00 0.00 3.85
3063 8778 4.330074 GTCGTTAAGATGTTCATGGAGGTG 59.670 45.833 0.00 0.00 0.00 4.00
3064 8779 3.623060 CGTTAAGATGTTCATGGAGGTGG 59.377 47.826 0.00 0.00 0.00 4.61
3065 8780 2.134789 AAGATGTTCATGGAGGTGGC 57.865 50.000 0.00 0.00 0.00 5.01
3066 8781 0.994247 AGATGTTCATGGAGGTGGCA 59.006 50.000 0.00 0.00 0.00 4.92
3067 8782 1.355381 AGATGTTCATGGAGGTGGCAA 59.645 47.619 0.00 0.00 0.00 4.52
3068 8783 1.474077 GATGTTCATGGAGGTGGCAAC 59.526 52.381 0.00 0.00 0.00 4.17
3109 8824 1.107114 CACCGCTCATGGTAGAGTCT 58.893 55.000 0.00 0.00 41.38 3.24
3110 8825 1.107114 ACCGCTCATGGTAGAGTCTG 58.893 55.000 1.86 0.00 41.55 3.51
3111 8826 1.341089 ACCGCTCATGGTAGAGTCTGA 60.341 52.381 1.86 0.00 41.55 3.27
3112 8827 1.066303 CCGCTCATGGTAGAGTCTGAC 59.934 57.143 1.86 0.00 37.94 3.51
3113 8828 1.268285 CGCTCATGGTAGAGTCTGACG 60.268 57.143 1.86 0.00 37.94 4.35
3114 8829 1.066303 GCTCATGGTAGAGTCTGACGG 59.934 57.143 1.86 0.00 37.94 4.79
3115 8830 1.066303 CTCATGGTAGAGTCTGACGGC 59.934 57.143 1.86 0.00 0.00 5.68
3116 8831 0.817654 CATGGTAGAGTCTGACGGCA 59.182 55.000 1.86 0.00 0.00 5.69
3142 8859 3.181477 TGCCTCTCCAAAAACATTGTGTG 60.181 43.478 0.00 0.00 0.00 3.82
3143 8860 3.181476 GCCTCTCCAAAAACATTGTGTGT 60.181 43.478 0.00 0.00 44.84 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 68 4.516323 TGGACAACATGTGTGATAGGATG 58.484 43.478 0.00 0.00 41.96 3.51
70 73 3.701205 AGCTGGACAACATGTGTGATA 57.299 42.857 0.00 0.00 41.96 2.15
75 78 3.922240 GCAATTTAGCTGGACAACATGTG 59.078 43.478 0.00 0.00 0.00 3.21
156 159 5.227805 CGAATTATTCAGGAAACAATGCACG 59.772 40.000 5.76 0.00 0.00 5.34
180 183 0.103208 CCTCGGTGGAGATACACAGC 59.897 60.000 0.00 0.00 43.27 4.40
195 198 1.552348 GAAGATCGATTGCGCCCTCG 61.552 60.000 19.17 19.17 37.46 4.63
199 202 1.278038 GCAGAAGATCGATTGCGCC 59.722 57.895 4.18 0.00 37.46 6.53
200 203 4.889065 GCAGAAGATCGATTGCGC 57.111 55.556 0.00 0.00 37.46 6.09
212 215 4.647424 AAGGAACAAAATGAACGCAGAA 57.353 36.364 0.00 0.00 0.00 3.02
625 628 4.726583 TCGCCTACTGATATTGTACTCCT 58.273 43.478 0.00 0.00 0.00 3.69
626 629 5.646577 ATCGCCTACTGATATTGTACTCC 57.353 43.478 0.00 0.00 0.00 3.85
627 630 5.795939 CGAATCGCCTACTGATATTGTACTC 59.204 44.000 0.00 0.00 0.00 2.59
635 640 1.534163 CGGACGAATCGCCTACTGATA 59.466 52.381 1.15 0.00 0.00 2.15
682 687 2.858476 TCCAGCCTCCCCTGCAAA 60.858 61.111 0.00 0.00 0.00 3.68
683 688 3.333219 CTCCAGCCTCCCCTGCAA 61.333 66.667 0.00 0.00 0.00 4.08
705 710 8.524487 CACAATAGTACTTCTGAAACTACCTCT 58.476 37.037 0.00 0.00 0.00 3.69
706 711 8.305317 ACACAATAGTACTTCTGAAACTACCTC 58.695 37.037 0.00 0.00 0.00 3.85
707 712 8.191534 ACACAATAGTACTTCTGAAACTACCT 57.808 34.615 0.00 0.00 0.00 3.08
708 713 8.828688 AACACAATAGTACTTCTGAAACTACC 57.171 34.615 0.00 0.00 0.00 3.18
741 747 9.897040 AATGTGTCCCCTGGATATATAAAAATT 57.103 29.630 0.00 0.00 32.73 1.82
745 751 7.238723 TGCTAATGTGTCCCCTGGATATATAAA 59.761 37.037 0.00 0.00 32.73 1.40
750 756 3.326521 TGCTAATGTGTCCCCTGGATAT 58.673 45.455 0.00 0.00 32.73 1.63
753 759 0.911769 CTGCTAATGTGTCCCCTGGA 59.088 55.000 0.00 0.00 0.00 3.86
754 760 0.749454 GCTGCTAATGTGTCCCCTGG 60.749 60.000 0.00 0.00 0.00 4.45
755 761 0.035152 TGCTGCTAATGTGTCCCCTG 60.035 55.000 0.00 0.00 0.00 4.45
756 762 0.698238 TTGCTGCTAATGTGTCCCCT 59.302 50.000 0.00 0.00 0.00 4.79
757 763 1.406539 CATTGCTGCTAATGTGTCCCC 59.593 52.381 0.00 0.00 34.21 4.81
758 764 2.094675 ACATTGCTGCTAATGTGTCCC 58.905 47.619 21.27 0.00 46.44 4.46
764 770 7.677454 TCCATCTAATACATTGCTGCTAATG 57.323 36.000 17.36 17.36 42.38 1.90
793 4727 3.153130 TGGCAAGATTCGGAAAACATCA 58.847 40.909 0.00 0.00 0.00 3.07
794 4728 3.191371 ACTGGCAAGATTCGGAAAACATC 59.809 43.478 0.00 0.00 0.00 3.06
800 4734 3.621268 CGATAAACTGGCAAGATTCGGAA 59.379 43.478 0.00 0.00 0.00 4.30
802 4736 2.286418 GCGATAAACTGGCAAGATTCGG 60.286 50.000 0.00 0.00 0.00 4.30
901 4860 6.980978 AGACACATATTAGAACGGACTGAATG 59.019 38.462 0.00 0.00 0.00 2.67
911 4870 9.155975 AGATCACACAAAGACACATATTAGAAC 57.844 33.333 0.00 0.00 0.00 3.01
916 4875 7.587629 CAACAGATCACACAAAGACACATATT 58.412 34.615 0.00 0.00 0.00 1.28
917 4876 6.348786 GCAACAGATCACACAAAGACACATAT 60.349 38.462 0.00 0.00 0.00 1.78
920 4879 3.065233 GCAACAGATCACACAAAGACACA 59.935 43.478 0.00 0.00 0.00 3.72
921 4880 3.065233 TGCAACAGATCACACAAAGACAC 59.935 43.478 0.00 0.00 0.00 3.67
922 4881 3.277715 TGCAACAGATCACACAAAGACA 58.722 40.909 0.00 0.00 0.00 3.41
923 4882 3.304257 CCTGCAACAGATCACACAAAGAC 60.304 47.826 0.00 0.00 32.44 3.01
924 4883 2.880268 CCTGCAACAGATCACACAAAGA 59.120 45.455 0.00 0.00 32.44 2.52
926 4885 1.955778 CCCTGCAACAGATCACACAAA 59.044 47.619 0.00 0.00 32.44 2.83
927 4886 1.142667 TCCCTGCAACAGATCACACAA 59.857 47.619 0.00 0.00 32.44 3.33
928 4887 0.764271 TCCCTGCAACAGATCACACA 59.236 50.000 0.00 0.00 32.44 3.72
929 4888 1.896220 TTCCCTGCAACAGATCACAC 58.104 50.000 0.00 0.00 32.44 3.82
996 4972 2.102420 CCCTCGCAATCTGTACATGGTA 59.898 50.000 0.00 0.00 0.00 3.25
1347 5569 2.224426 ACCATACGAAGCACCACTGAAA 60.224 45.455 0.00 0.00 0.00 2.69
1362 5584 7.550551 TGTCTTGAGAAAATGAGATGACCATAC 59.449 37.037 0.00 0.00 0.00 2.39
1565 5787 0.759346 AGAGCGTCCCACCCAATATC 59.241 55.000 0.00 0.00 0.00 1.63
1581 5803 1.186200 TTGGTCCATCGTCAGGAGAG 58.814 55.000 0.00 0.00 35.42 3.20
1631 7148 4.452114 TGATATCCGAATCGATGCCAAAAG 59.548 41.667 3.36 0.00 0.00 2.27
1704 7222 6.057533 CCTAATCATGCTTGACTCCATTACA 58.942 40.000 4.14 0.00 33.85 2.41
1707 7225 5.378230 TCCTAATCATGCTTGACTCCATT 57.622 39.130 4.14 0.00 33.85 3.16
1968 7487 8.308207 TCATGGTTATAGCAGTATACGCAATTA 58.692 33.333 17.70 6.21 0.00 1.40
1998 7517 1.411977 TCCAGTGCAACCCAATGTTTG 59.588 47.619 0.00 0.00 37.82 2.93
2073 7592 5.877012 GCTATCACGACCCATGAATATGAAT 59.123 40.000 0.00 0.00 36.36 2.57
2119 7638 1.137086 GAACGAGAGCATGCTAGGGAA 59.863 52.381 22.74 0.00 0.00 3.97
2212 7739 9.247861 ACAACTGGCAAAATTAGAGATTCTTAT 57.752 29.630 0.00 0.00 0.00 1.73
2449 8084 3.906846 ACATCATCCCTCCTATCCAACTC 59.093 47.826 0.00 0.00 0.00 3.01
2513 8148 7.734924 TGCATTCCTCACTAATGATAACATC 57.265 36.000 0.00 0.00 36.61 3.06
2663 8356 9.230122 TGTGAAATGCAATTGTTAAGAGAGATA 57.770 29.630 7.40 0.00 36.10 1.98
2664 8357 8.025445 GTGTGAAATGCAATTGTTAAGAGAGAT 58.975 33.333 7.40 0.00 36.10 2.75
2665 8358 7.013178 TGTGTGAAATGCAATTGTTAAGAGAGA 59.987 33.333 7.40 0.00 36.10 3.10
2666 8359 7.140705 TGTGTGAAATGCAATTGTTAAGAGAG 58.859 34.615 7.40 0.00 36.10 3.20
2704 8398 3.510360 GCCACTAGTGTTCAGGAGACTAA 59.490 47.826 21.18 0.00 40.21 2.24
2743 8438 2.643551 CGGCCATTGTGAGACCTTATT 58.356 47.619 2.24 0.00 0.00 1.40
2775 8470 7.410728 GCATGTAAGTAATGTGTGAAATGCAAC 60.411 37.037 0.00 0.00 37.29 4.17
2818 8513 6.040504 CAGTAGACATGTATAAGCCACTGGTA 59.959 42.308 10.99 0.00 0.00 3.25
2821 8516 5.069119 TCCAGTAGACATGTATAAGCCACTG 59.931 44.000 11.64 11.64 0.00 3.66
2975 8690 4.370049 TCAAATTTGTGTGCTGATGTTGG 58.630 39.130 17.47 0.00 0.00 3.77
2999 8714 0.618680 ATCCAGCAGGTGACAGCCTA 60.619 55.000 0.00 0.00 45.26 3.93
3020 8735 1.455849 CTGTCCTTGGGTTGGAGCA 59.544 57.895 0.00 0.00 33.78 4.26
3057 8772 2.438434 CCATCGGTTGCCACCTCC 60.438 66.667 5.29 0.00 41.64 4.30
3058 8773 2.438434 CCCATCGGTTGCCACCTC 60.438 66.667 5.29 0.00 41.64 3.85
3059 8774 2.933287 TCCCATCGGTTGCCACCT 60.933 61.111 5.29 0.00 41.64 4.00
3060 8775 2.270874 ATCTCCCATCGGTTGCCACC 62.271 60.000 0.00 0.00 40.16 4.61
3061 8776 1.097547 CATCTCCCATCGGTTGCCAC 61.098 60.000 0.00 0.00 0.00 5.01
3062 8777 1.224315 CATCTCCCATCGGTTGCCA 59.776 57.895 0.00 0.00 0.00 4.92
3063 8778 2.189499 GCATCTCCCATCGGTTGCC 61.189 63.158 0.00 0.00 0.00 4.52
3064 8779 0.820891 ATGCATCTCCCATCGGTTGC 60.821 55.000 0.00 0.00 33.80 4.17
3065 8780 1.233019 GATGCATCTCCCATCGGTTG 58.767 55.000 19.70 0.00 30.88 3.77
3066 8781 0.109342 GGATGCATCTCCCATCGGTT 59.891 55.000 25.28 0.00 39.92 4.44
3067 8782 1.757306 GGATGCATCTCCCATCGGT 59.243 57.895 25.28 0.00 39.92 4.69
3068 8783 4.709840 GGATGCATCTCCCATCGG 57.290 61.111 25.28 0.00 39.92 4.18
3115 8830 5.047802 ACAATGTTTTTGGAGAGGCAGTATG 60.048 40.000 0.00 0.00 40.87 2.39
3116 8831 5.047802 CACAATGTTTTTGGAGAGGCAGTAT 60.048 40.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.