Multiple sequence alignment - TraesCS7D01G029300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G029300 chr7D 100.000 4249 0 0 1 4249 14590130 14594378 0.000000e+00 7847.0
1 TraesCS7D01G029300 chr7D 80.597 1139 170 36 2329 3450 59469035 59470139 0.000000e+00 832.0
2 TraesCS7D01G029300 chr7D 82.014 884 132 13 372 1241 59466873 59467743 0.000000e+00 726.0
3 TraesCS7D01G029300 chr7D 84.814 349 49 4 1954 2301 59468691 59469036 8.740000e-92 348.0
4 TraesCS7D01G029300 chr7A 96.613 3868 114 10 1 3858 13831907 13835767 0.000000e+00 6401.0
5 TraesCS7D01G029300 chr7A 81.692 1513 224 40 1954 3450 63783730 63785205 0.000000e+00 1210.0
6 TraesCS7D01G029300 chr7A 81.385 881 138 19 372 1241 63781888 63782753 0.000000e+00 695.0
7 TraesCS7D01G029300 chr7A 88.119 202 20 3 1018 1216 20513108 20512908 1.970000e-58 237.0
8 TraesCS7D01G029300 chrUn 94.077 2600 107 25 64 2630 335449096 335446511 0.000000e+00 3904.0
9 TraesCS7D01G029300 chrUn 95.462 1278 45 5 1 1269 307992961 307991688 0.000000e+00 2026.0
10 TraesCS7D01G029300 chrUn 92.965 796 41 3 2613 3408 348216588 348217368 0.000000e+00 1146.0
11 TraesCS7D01G029300 chrUn 92.462 199 14 1 3949 4147 469696239 469696436 2.500000e-72 283.0
12 TraesCS7D01G029300 chrUn 78.281 221 35 9 1544 1760 15442220 15442009 3.450000e-26 130.0
13 TraesCS7D01G029300 chrUn 78.281 221 35 9 1544 1760 283167169 283167380 3.450000e-26 130.0
14 TraesCS7D01G029300 chrUn 78.673 211 32 9 1555 1760 358520486 358520284 1.240000e-25 128.0
15 TraesCS7D01G029300 chrUn 78.199 211 32 9 1555 1760 15722629 15722830 5.770000e-24 122.0
16 TraesCS7D01G029300 chrUn 80.769 130 22 2 1631 1760 357010893 357011019 9.720000e-17 99.0
17 TraesCS7D01G029300 chr4A 93.780 2299 80 32 64 2302 722295038 722292743 0.000000e+00 3395.0
18 TraesCS7D01G029300 chr4A 96.457 1750 53 3 2291 4040 722288449 722286709 0.000000e+00 2880.0
19 TraesCS7D01G029300 chr4A 95.540 1278 44 5 1 1269 722296454 722295181 0.000000e+00 2032.0
20 TraesCS7D01G029300 chr4A 78.765 1182 197 41 2273 3437 722331523 722330379 0.000000e+00 743.0
21 TraesCS7D01G029300 chr4A 86.695 233 30 1 1958 2190 722331796 722331565 1.520000e-64 257.0
22 TraesCS7D01G029300 chr4A 87.778 90 9 2 3251 3339 722320505 722320417 2.090000e-18 104.0
23 TraesCS7D01G029300 chr2D 79.760 1250 199 24 1959 3183 2449701 2448481 0.000000e+00 857.0
24 TraesCS7D01G029300 chr3B 79.661 826 132 20 2349 3160 22459124 22458321 2.870000e-156 562.0
25 TraesCS7D01G029300 chr3D 80.032 616 96 14 2349 2950 15342004 15341402 8.440000e-117 431.0
26 TraesCS7D01G029300 chr3D 73.646 683 131 32 518 1177 15344949 15344293 7.150000e-53 219.0
27 TraesCS7D01G029300 chr3A 73.768 690 134 31 510 1177 20936888 20937552 1.190000e-55 228.0
28 TraesCS7D01G029300 chr6A 83.871 93 15 0 1022 1114 528574214 528574306 5.850000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G029300 chr7D 14590130 14594378 4248 False 7847.000000 7847 100.0000 1 4249 1 chr7D.!!$F1 4248
1 TraesCS7D01G029300 chr7D 59466873 59470139 3266 False 635.333333 832 82.4750 372 3450 3 chr7D.!!$F2 3078
2 TraesCS7D01G029300 chr7A 13831907 13835767 3860 False 6401.000000 6401 96.6130 1 3858 1 chr7A.!!$F1 3857
3 TraesCS7D01G029300 chr7A 63781888 63785205 3317 False 952.500000 1210 81.5385 372 3450 2 chr7A.!!$F2 3078
4 TraesCS7D01G029300 chrUn 335446511 335449096 2585 True 3904.000000 3904 94.0770 64 2630 1 chrUn.!!$R3 2566
5 TraesCS7D01G029300 chrUn 307991688 307992961 1273 True 2026.000000 2026 95.4620 1 1269 1 chrUn.!!$R2 1268
6 TraesCS7D01G029300 chrUn 348216588 348217368 780 False 1146.000000 1146 92.9650 2613 3408 1 chrUn.!!$F3 795
7 TraesCS7D01G029300 chr4A 722286709 722288449 1740 True 2880.000000 2880 96.4570 2291 4040 1 chr4A.!!$R1 1749
8 TraesCS7D01G029300 chr4A 722292743 722296454 3711 True 2713.500000 3395 94.6600 1 2302 2 chr4A.!!$R3 2301
9 TraesCS7D01G029300 chr4A 722330379 722331796 1417 True 500.000000 743 82.7300 1958 3437 2 chr4A.!!$R4 1479
10 TraesCS7D01G029300 chr2D 2448481 2449701 1220 True 857.000000 857 79.7600 1959 3183 1 chr2D.!!$R1 1224
11 TraesCS7D01G029300 chr3B 22458321 22459124 803 True 562.000000 562 79.6610 2349 3160 1 chr3B.!!$R1 811
12 TraesCS7D01G029300 chr3D 15341402 15344949 3547 True 325.000000 431 76.8390 518 2950 2 chr3D.!!$R1 2432
13 TraesCS7D01G029300 chr3A 20936888 20937552 664 False 228.000000 228 73.7680 510 1177 1 chr3A.!!$F1 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 602 0.343372 TCCCCACTAATGCCTCCTCT 59.657 55.0 0.0 0.0 0.0 3.69 F
1226 2606 0.337773 TCCTCCATCACTCAGGCTCT 59.662 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 4310 3.587797 AGCGATGTTCTTCGGAGTAAA 57.412 42.857 9.43 0.0 39.49 2.01 R
3302 6244 5.420725 TGCCTTGTACAACATCTACAGAT 57.579 39.130 3.59 0.0 34.56 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 307 6.310224 CGGTTTCAATTTTGTTGACTGTCTTT 59.690 34.615 9.51 0.00 0.00 2.52
328 332 7.523293 TTTTTGCCAGAGAATTATTGACTGA 57.477 32.000 8.70 0.00 0.00 3.41
591 602 0.343372 TCCCCACTAATGCCTCCTCT 59.657 55.000 0.00 0.00 0.00 3.69
596 607 2.122768 CACTAATGCCTCCTCTTCCCT 58.877 52.381 0.00 0.00 0.00 4.20
717 728 1.228398 TGTTGCCGCCTCATTCCAA 60.228 52.632 0.00 0.00 0.00 3.53
719 730 2.331893 TTGCCGCCTCATTCCAACG 61.332 57.895 0.00 0.00 0.00 4.10
942 953 0.882042 CAGACGTCCACAAGCTGCTT 60.882 55.000 13.01 9.53 0.00 3.91
1226 2606 0.337773 TCCTCCATCACTCAGGCTCT 59.662 55.000 0.00 0.00 0.00 4.09
1342 3012 5.529060 GCTCTTGATAATTCGTCCAAGGATT 59.471 40.000 0.00 0.00 37.27 3.01
1608 3923 1.127951 GCGCACTAATAAGTTGCACGT 59.872 47.619 0.30 0.00 35.53 4.49
1887 4309 8.584063 TCCACATATAGCCTCGTTATACATAA 57.416 34.615 0.00 0.00 0.00 1.90
1888 4310 9.197306 TCCACATATAGCCTCGTTATACATAAT 57.803 33.333 0.00 0.00 0.00 1.28
1907 4329 4.859629 AATTTACTCCGAAGAACATCGC 57.140 40.909 0.00 0.00 41.40 4.58
3288 6230 9.379791 AGTTATGTGTTCTTTACTAAGCCATAC 57.620 33.333 0.00 0.00 0.00 2.39
3302 6244 8.556213 ACTAAGCCATACGTAAAATCAAAGAA 57.444 30.769 0.00 0.00 0.00 2.52
3468 6411 8.548880 AGGTTTCTTATTAGATAGTGGTAGCA 57.451 34.615 0.00 0.00 0.00 3.49
3529 6472 6.206048 CCACAAACTACGAGGAAAAATAAGGT 59.794 38.462 0.00 0.00 0.00 3.50
3798 6741 0.731514 AGAACGCACCATACACGACG 60.732 55.000 0.00 0.00 0.00 5.12
3859 6802 8.454106 GTGTCATTAACAGCTTCAAATATCACT 58.546 33.333 0.00 0.00 38.97 3.41
3866 6809 6.426587 ACAGCTTCAAATATCACTGGGTATT 58.573 36.000 0.00 0.00 0.00 1.89
3867 6810 6.891908 ACAGCTTCAAATATCACTGGGTATTT 59.108 34.615 0.00 0.00 32.32 1.40
3875 6818 8.796475 CAAATATCACTGGGTATTTAGGAATGG 58.204 37.037 0.00 0.00 31.29 3.16
4040 6983 3.319198 GAGGTGGGTGGCGGAAGA 61.319 66.667 0.00 0.00 0.00 2.87
4041 6984 3.607370 GAGGTGGGTGGCGGAAGAC 62.607 68.421 0.00 0.00 42.12 3.01
4052 6995 3.701454 GGAAGACGACTGGGAGCT 58.299 61.111 0.00 0.00 0.00 4.09
4053 6996 1.976112 GGAAGACGACTGGGAGCTT 59.024 57.895 0.00 0.00 0.00 3.74
4054 6997 0.321996 GGAAGACGACTGGGAGCTTT 59.678 55.000 0.00 0.00 0.00 3.51
4055 6998 1.433534 GAAGACGACTGGGAGCTTTG 58.566 55.000 0.00 0.00 0.00 2.77
4056 6999 0.035458 AAGACGACTGGGAGCTTTGG 59.965 55.000 0.00 0.00 0.00 3.28
4057 7000 1.122019 AGACGACTGGGAGCTTTGGT 61.122 55.000 0.00 0.00 0.00 3.67
4058 7001 0.670854 GACGACTGGGAGCTTTGGTC 60.671 60.000 0.00 0.00 0.00 4.02
4059 7002 1.122019 ACGACTGGGAGCTTTGGTCT 61.122 55.000 0.00 0.00 0.00 3.85
4060 7003 0.895530 CGACTGGGAGCTTTGGTCTA 59.104 55.000 0.00 0.00 0.00 2.59
4061 7004 1.134965 CGACTGGGAGCTTTGGTCTAG 60.135 57.143 0.00 0.00 0.00 2.43
4062 7005 2.180276 GACTGGGAGCTTTGGTCTAGA 58.820 52.381 0.00 0.00 0.00 2.43
4063 7006 2.167487 GACTGGGAGCTTTGGTCTAGAG 59.833 54.545 0.00 0.00 0.00 2.43
4064 7007 0.905357 TGGGAGCTTTGGTCTAGAGC 59.095 55.000 15.12 15.12 36.68 4.09
4065 7008 0.179097 GGGAGCTTTGGTCTAGAGCG 60.179 60.000 16.71 4.37 41.19 5.03
4066 7009 0.818296 GGAGCTTTGGTCTAGAGCGA 59.182 55.000 16.71 12.52 41.19 4.93
4067 7010 1.202359 GGAGCTTTGGTCTAGAGCGAG 60.202 57.143 16.71 16.60 41.19 5.03
4068 7011 0.820871 AGCTTTGGTCTAGAGCGAGG 59.179 55.000 16.71 15.91 41.19 4.63
4069 7012 0.179097 GCTTTGGTCTAGAGCGAGGG 60.179 60.000 19.58 13.87 0.00 4.30
4070 7013 0.179097 CTTTGGTCTAGAGCGAGGGC 60.179 60.000 16.71 0.00 40.37 5.19
4071 7014 0.902984 TTTGGTCTAGAGCGAGGGCA 60.903 55.000 16.71 0.00 43.41 5.36
4072 7015 1.323271 TTGGTCTAGAGCGAGGGCAG 61.323 60.000 16.71 0.00 43.41 4.85
4073 7016 1.755008 GGTCTAGAGCGAGGGCAGT 60.755 63.158 6.12 0.00 43.41 4.40
4074 7017 1.435515 GTCTAGAGCGAGGGCAGTG 59.564 63.158 0.00 0.00 43.41 3.66
4075 7018 1.032657 GTCTAGAGCGAGGGCAGTGA 61.033 60.000 0.00 0.00 43.41 3.41
4076 7019 1.032657 TCTAGAGCGAGGGCAGTGAC 61.033 60.000 0.00 0.00 43.41 3.67
4077 7020 2.329678 CTAGAGCGAGGGCAGTGACG 62.330 65.000 0.00 0.00 43.41 4.35
4078 7021 4.057428 GAGCGAGGGCAGTGACGT 62.057 66.667 0.00 0.00 43.41 4.34
4079 7022 4.363990 AGCGAGGGCAGTGACGTG 62.364 66.667 0.00 0.00 43.41 4.49
4080 7023 4.357947 GCGAGGGCAGTGACGTGA 62.358 66.667 0.00 0.00 39.62 4.35
4081 7024 2.338620 CGAGGGCAGTGACGTGAA 59.661 61.111 0.00 0.00 0.00 3.18
4082 7025 1.734477 CGAGGGCAGTGACGTGAAG 60.734 63.158 0.00 0.00 0.00 3.02
4083 7026 2.029844 GAGGGCAGTGACGTGAAGC 61.030 63.158 0.00 0.00 0.00 3.86
4085 7028 2.355837 GGCAGTGACGTGAAGCGA 60.356 61.111 0.00 0.00 44.77 4.93
4086 7029 2.658707 GGCAGTGACGTGAAGCGAC 61.659 63.158 0.00 0.00 44.77 5.19
4087 7030 1.949133 GCAGTGACGTGAAGCGACA 60.949 57.895 0.00 0.00 44.77 4.35
4088 7031 1.487452 GCAGTGACGTGAAGCGACAA 61.487 55.000 0.00 0.00 45.43 3.18
4089 7032 1.139989 CAGTGACGTGAAGCGACAAT 58.860 50.000 0.00 0.00 45.43 2.71
4090 7033 1.526887 CAGTGACGTGAAGCGACAATT 59.473 47.619 0.00 0.00 45.43 2.32
4091 7034 2.032894 CAGTGACGTGAAGCGACAATTT 60.033 45.455 0.00 0.00 45.43 1.82
4092 7035 2.032894 AGTGACGTGAAGCGACAATTTG 60.033 45.455 0.00 0.00 45.43 2.32
4093 7036 1.262950 TGACGTGAAGCGACAATTTGG 59.737 47.619 0.00 0.00 41.66 3.28
4094 7037 1.529438 GACGTGAAGCGACAATTTGGA 59.471 47.619 0.00 0.00 44.77 3.53
4095 7038 1.531149 ACGTGAAGCGACAATTTGGAG 59.469 47.619 0.78 0.00 44.77 3.86
4096 7039 1.725931 CGTGAAGCGACAATTTGGAGC 60.726 52.381 9.42 9.42 44.77 4.70
4097 7040 1.266718 GTGAAGCGACAATTTGGAGCA 59.733 47.619 16.75 0.00 0.00 4.26
4098 7041 1.536766 TGAAGCGACAATTTGGAGCAG 59.463 47.619 16.75 0.00 0.00 4.24
4099 7042 0.883833 AAGCGACAATTTGGAGCAGG 59.116 50.000 16.75 0.00 0.00 4.85
4100 7043 1.153958 GCGACAATTTGGAGCAGGC 60.154 57.895 11.71 0.00 0.00 4.85
4101 7044 1.865788 GCGACAATTTGGAGCAGGCA 61.866 55.000 11.71 0.00 0.00 4.75
4102 7045 0.109597 CGACAATTTGGAGCAGGCAC 60.110 55.000 0.78 0.00 0.00 5.01
4103 7046 0.109597 GACAATTTGGAGCAGGCACG 60.110 55.000 0.78 0.00 0.00 5.34
4104 7047 0.537143 ACAATTTGGAGCAGGCACGA 60.537 50.000 0.78 0.00 0.00 4.35
4105 7048 0.109597 CAATTTGGAGCAGGCACGAC 60.110 55.000 0.00 0.00 0.00 4.34
4106 7049 0.537143 AATTTGGAGCAGGCACGACA 60.537 50.000 0.00 0.00 0.00 4.35
4107 7050 0.537143 ATTTGGAGCAGGCACGACAA 60.537 50.000 0.00 0.00 0.00 3.18
4108 7051 1.444119 TTTGGAGCAGGCACGACAAC 61.444 55.000 0.00 0.00 0.00 3.32
4109 7052 3.050275 GGAGCAGGCACGACAACC 61.050 66.667 0.00 0.00 0.00 3.77
4110 7053 2.031163 GAGCAGGCACGACAACCT 59.969 61.111 0.00 0.00 36.45 3.50
4114 7057 4.701663 AGGCACGACAACCTGATG 57.298 55.556 0.00 0.00 34.07 3.07
4115 7058 1.003355 AGGCACGACAACCTGATGG 60.003 57.895 0.00 0.00 34.07 3.51
4126 7069 2.672961 ACCTGATGGTGTGTATGACG 57.327 50.000 0.00 0.00 46.51 4.35
4127 7070 2.176045 ACCTGATGGTGTGTATGACGA 58.824 47.619 0.00 0.00 46.51 4.20
4128 7071 2.094182 ACCTGATGGTGTGTATGACGAC 60.094 50.000 0.00 0.00 46.51 4.34
4129 7072 2.540515 CTGATGGTGTGTATGACGACC 58.459 52.381 0.00 0.00 0.00 4.79
4130 7073 1.135228 TGATGGTGTGTATGACGACCG 60.135 52.381 0.00 0.00 31.74 4.79
4131 7074 1.133598 GATGGTGTGTATGACGACCGA 59.866 52.381 0.00 0.00 31.74 4.69
4132 7075 1.179152 TGGTGTGTATGACGACCGAT 58.821 50.000 0.00 0.00 31.74 4.18
4133 7076 1.135228 TGGTGTGTATGACGACCGATG 60.135 52.381 0.00 0.00 31.74 3.84
4134 7077 0.921347 GTGTGTATGACGACCGATGC 59.079 55.000 0.00 0.00 0.00 3.91
4135 7078 0.528470 TGTGTATGACGACCGATGCA 59.472 50.000 0.00 0.00 0.00 3.96
4136 7079 1.200483 GTGTATGACGACCGATGCAG 58.800 55.000 0.00 0.00 0.00 4.41
4137 7080 1.099689 TGTATGACGACCGATGCAGA 58.900 50.000 0.00 0.00 0.00 4.26
4138 7081 1.202256 TGTATGACGACCGATGCAGAC 60.202 52.381 0.00 0.33 0.00 3.51
4139 7082 0.028902 TATGACGACCGATGCAGACG 59.971 55.000 8.75 8.75 0.00 4.18
4140 7083 1.934220 ATGACGACCGATGCAGACGT 61.934 55.000 13.44 8.21 39.82 4.34
4141 7084 2.126463 ACGACCGATGCAGACGTG 60.126 61.111 13.44 8.47 35.91 4.49
4176 7119 2.430367 GGGGGTGTTTGAGCTCGT 59.570 61.111 9.64 0.00 0.00 4.18
4177 7120 1.228154 GGGGGTGTTTGAGCTCGTT 60.228 57.895 9.64 0.00 0.00 3.85
4178 7121 1.235281 GGGGGTGTTTGAGCTCGTTC 61.235 60.000 9.64 2.12 0.00 3.95
4179 7122 0.534203 GGGGTGTTTGAGCTCGTTCA 60.534 55.000 9.64 4.88 0.00 3.18
4180 7123 0.868406 GGGTGTTTGAGCTCGTTCAG 59.132 55.000 9.64 0.00 0.00 3.02
4181 7124 0.868406 GGTGTTTGAGCTCGTTCAGG 59.132 55.000 9.64 0.00 0.00 3.86
4182 7125 1.540363 GGTGTTTGAGCTCGTTCAGGA 60.540 52.381 9.64 0.00 0.00 3.86
4183 7126 1.527311 GTGTTTGAGCTCGTTCAGGAC 59.473 52.381 9.64 0.62 0.00 3.85
4184 7127 1.149148 GTTTGAGCTCGTTCAGGACC 58.851 55.000 9.64 0.00 0.00 4.46
4185 7128 0.034896 TTTGAGCTCGTTCAGGACCC 59.965 55.000 9.64 0.00 0.00 4.46
4186 7129 1.827399 TTGAGCTCGTTCAGGACCCC 61.827 60.000 9.64 0.00 0.00 4.95
4187 7130 3.358076 GAGCTCGTTCAGGACCCCG 62.358 68.421 0.00 0.00 0.00 5.73
4188 7131 3.379445 GCTCGTTCAGGACCCCGA 61.379 66.667 0.00 0.00 0.00 5.14
4189 7132 2.885861 CTCGTTCAGGACCCCGAG 59.114 66.667 6.20 6.20 40.54 4.63
4190 7133 2.437449 TCGTTCAGGACCCCGAGA 59.563 61.111 0.00 0.00 0.00 4.04
4191 7134 1.000019 TCGTTCAGGACCCCGAGAT 60.000 57.895 0.00 0.00 0.00 2.75
4192 7135 0.613853 TCGTTCAGGACCCCGAGATT 60.614 55.000 0.00 0.00 0.00 2.40
4193 7136 0.249398 CGTTCAGGACCCCGAGATTT 59.751 55.000 0.00 0.00 0.00 2.17
4194 7137 1.739371 CGTTCAGGACCCCGAGATTTC 60.739 57.143 0.00 0.00 0.00 2.17
4195 7138 1.278127 GTTCAGGACCCCGAGATTTCA 59.722 52.381 0.00 0.00 0.00 2.69
4196 7139 1.651737 TCAGGACCCCGAGATTTCAA 58.348 50.000 0.00 0.00 0.00 2.69
4197 7140 1.982226 TCAGGACCCCGAGATTTCAAA 59.018 47.619 0.00 0.00 0.00 2.69
4198 7141 2.027192 TCAGGACCCCGAGATTTCAAAG 60.027 50.000 0.00 0.00 0.00 2.77
4199 7142 1.095600 GGACCCCGAGATTTCAAAGC 58.904 55.000 0.00 0.00 0.00 3.51
4200 7143 1.340114 GGACCCCGAGATTTCAAAGCT 60.340 52.381 0.00 0.00 0.00 3.74
4201 7144 1.740025 GACCCCGAGATTTCAAAGCTG 59.260 52.381 0.00 0.00 0.00 4.24
4202 7145 1.098050 CCCCGAGATTTCAAAGCTGG 58.902 55.000 0.00 0.00 0.00 4.85
4203 7146 1.098050 CCCGAGATTTCAAAGCTGGG 58.902 55.000 9.38 9.38 41.74 4.45
4204 7147 1.614317 CCCGAGATTTCAAAGCTGGGT 60.614 52.381 14.56 0.00 40.65 4.51
4205 7148 2.162681 CCGAGATTTCAAAGCTGGGTT 58.837 47.619 8.22 0.00 37.91 4.11
4206 7149 2.162408 CCGAGATTTCAAAGCTGGGTTC 59.838 50.000 8.22 0.00 37.91 3.62
4207 7150 2.159653 CGAGATTTCAAAGCTGGGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
4208 7151 2.162408 GAGATTTCAAAGCTGGGTTCGG 59.838 50.000 0.00 0.00 0.00 4.30
4209 7152 1.202348 GATTTCAAAGCTGGGTTCGGG 59.798 52.381 0.00 0.00 0.00 5.14
4210 7153 0.825840 TTTCAAAGCTGGGTTCGGGG 60.826 55.000 0.00 0.00 0.00 5.73
4211 7154 3.373565 CAAAGCTGGGTTCGGGGC 61.374 66.667 0.00 0.00 0.00 5.80
4212 7155 3.580319 AAAGCTGGGTTCGGGGCT 61.580 61.111 0.00 0.00 36.53 5.19
4213 7156 3.868200 AAAGCTGGGTTCGGGGCTG 62.868 63.158 0.00 0.00 35.08 4.85
4216 7159 3.006728 CTGGGTTCGGGGCTGGTA 61.007 66.667 0.00 0.00 0.00 3.25
4217 7160 3.006728 TGGGTTCGGGGCTGGTAG 61.007 66.667 0.00 0.00 0.00 3.18
4218 7161 3.793888 GGGTTCGGGGCTGGTAGG 61.794 72.222 0.00 0.00 0.00 3.18
4219 7162 2.686106 GGTTCGGGGCTGGTAGGA 60.686 66.667 0.00 0.00 0.00 2.94
4220 7163 2.295602 GGTTCGGGGCTGGTAGGAA 61.296 63.158 0.00 0.00 0.00 3.36
4221 7164 1.681076 GTTCGGGGCTGGTAGGAAA 59.319 57.895 0.00 0.00 0.00 3.13
4222 7165 0.392595 GTTCGGGGCTGGTAGGAAAG 60.393 60.000 0.00 0.00 0.00 2.62
4223 7166 2.124695 CGGGGCTGGTAGGAAAGC 60.125 66.667 0.00 0.00 38.76 3.51
4224 7167 2.670148 CGGGGCTGGTAGGAAAGCT 61.670 63.158 0.00 0.00 39.46 3.74
4225 7168 1.335132 CGGGGCTGGTAGGAAAGCTA 61.335 60.000 0.00 0.00 39.46 3.32
4226 7169 0.180642 GGGGCTGGTAGGAAAGCTAC 59.819 60.000 0.00 0.00 39.46 3.58
4227 7170 1.205055 GGGCTGGTAGGAAAGCTACT 58.795 55.000 0.00 0.00 39.46 2.57
4228 7171 1.134371 GGGCTGGTAGGAAAGCTACTG 60.134 57.143 0.00 0.00 39.46 2.74
4229 7172 1.657822 GCTGGTAGGAAAGCTACTGC 58.342 55.000 0.00 0.00 36.47 4.40
4230 7173 1.744114 GCTGGTAGGAAAGCTACTGCC 60.744 57.143 11.52 11.52 40.80 4.85
4231 7174 1.555075 CTGGTAGGAAAGCTACTGCCA 59.445 52.381 17.52 17.52 45.36 4.92
4232 7175 2.171448 CTGGTAGGAAAGCTACTGCCAT 59.829 50.000 18.40 0.00 46.13 4.40
4233 7176 2.092968 TGGTAGGAAAGCTACTGCCATG 60.093 50.000 15.52 0.00 43.21 3.66
4234 7177 2.565841 GTAGGAAAGCTACTGCCATGG 58.434 52.381 7.63 7.63 40.80 3.66
4235 7178 0.995024 AGGAAAGCTACTGCCATGGT 59.005 50.000 14.67 0.00 40.80 3.55
4236 7179 2.196595 AGGAAAGCTACTGCCATGGTA 58.803 47.619 14.67 8.24 40.80 3.25
4237 7180 2.092914 AGGAAAGCTACTGCCATGGTAC 60.093 50.000 14.67 0.00 40.80 3.34
4238 7181 2.289565 GAAAGCTACTGCCATGGTACC 58.710 52.381 14.67 4.43 40.80 3.34
4239 7182 1.584724 AAGCTACTGCCATGGTACCT 58.415 50.000 14.67 0.00 40.80 3.08
4240 7183 1.584724 AGCTACTGCCATGGTACCTT 58.415 50.000 14.67 3.50 40.80 3.50
4241 7184 1.210478 AGCTACTGCCATGGTACCTTG 59.790 52.381 18.69 18.69 40.80 3.61
4242 7185 1.747206 GCTACTGCCATGGTACCTTGG 60.747 57.143 32.93 32.93 42.20 3.61
4243 7186 0.916086 TACTGCCATGGTACCTTGGG 59.084 55.000 35.67 26.16 40.38 4.12
4244 7187 1.754234 CTGCCATGGTACCTTGGGC 60.754 63.158 35.67 30.64 40.38 5.36
4245 7188 2.442087 GCCATGGTACCTTGGGCC 60.442 66.667 35.67 22.56 40.38 5.80
4246 7189 2.278738 CCATGGTACCTTGGGCCC 59.721 66.667 30.76 17.59 37.53 5.80
4247 7190 2.316586 CCATGGTACCTTGGGCCCT 61.317 63.158 30.76 4.56 37.53 5.19
4248 7191 0.991355 CCATGGTACCTTGGGCCCTA 60.991 60.000 30.76 15.88 37.53 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 187 3.726557 ATCCAGAAGTCAATCAAGGCA 57.273 42.857 0.00 0.00 0.00 4.75
855 866 1.372997 GAAGAGCGTGCCGTTCTCA 60.373 57.895 12.69 0.00 45.77 3.27
942 953 2.163509 GAGTCCTGAGCTGTCACAGTA 58.836 52.381 6.68 0.00 33.43 2.74
1226 2606 5.414454 GTGTACATAATCTTGCCTGTTGGAA 59.586 40.000 0.00 0.00 34.57 3.53
1608 3923 5.077300 TCCCATACTAGTTCATGATCCCCTA 59.923 44.000 0.00 0.00 0.00 3.53
1810 4190 9.753674 AAGAGTTATGAATTTTCAGGGACATAA 57.246 29.630 0.00 0.00 41.08 1.90
1862 4269 8.584063 TTATGTATAACGAGGCTATATGTGGA 57.416 34.615 0.00 0.00 0.00 4.02
1887 4309 4.124851 AGCGATGTTCTTCGGAGTAAAT 57.875 40.909 9.43 0.00 39.49 1.40
1888 4310 3.587797 AGCGATGTTCTTCGGAGTAAA 57.412 42.857 9.43 0.00 39.49 2.01
1907 4329 9.981114 AAAATGGAAATTAACTCCACTTTGTAG 57.019 29.630 11.93 0.00 45.67 2.74
1977 4860 4.102210 TGCTATCTCCATTCCCTGAAGAAG 59.898 45.833 0.00 0.00 0.00 2.85
3302 6244 5.420725 TGCCTTGTACAACATCTACAGAT 57.579 39.130 3.59 0.00 34.56 2.90
3468 6411 1.697432 TCGGGATGTGAACTCACCTTT 59.303 47.619 7.37 0.00 45.88 3.11
3529 6472 2.483877 CTGCGGCTTTGTCATTGTCTTA 59.516 45.455 0.00 0.00 0.00 2.10
3558 6501 3.229293 TGCATGGTGGTTTGATGAAGAA 58.771 40.909 0.00 0.00 0.00 2.52
3638 6581 2.719354 GTGGTGTTGTTGCCGTCC 59.281 61.111 0.00 0.00 0.00 4.79
3859 6802 7.064229 GGTATGTTTCCATTCCTAAATACCCA 58.936 38.462 0.00 0.00 36.04 4.51
3866 6809 3.781407 TCGGGGTATGTTTCCATTCCTAA 59.219 43.478 0.00 0.00 38.30 2.69
3867 6810 3.135167 GTCGGGGTATGTTTCCATTCCTA 59.865 47.826 0.00 0.00 38.30 2.94
3875 6818 2.083167 TTGTCGTCGGGGTATGTTTC 57.917 50.000 0.00 0.00 0.00 2.78
3883 6826 0.796312 CAATGTCTTTGTCGTCGGGG 59.204 55.000 0.00 0.00 0.00 5.73
3888 6831 6.920569 AAAGAGTTACAATGTCTTTGTCGT 57.079 33.333 7.34 0.00 45.55 4.34
3913 6856 5.028375 GCTGATTCGTTTGTATGCCTTTAC 58.972 41.667 0.00 0.00 0.00 2.01
3918 6861 1.396996 ACGCTGATTCGTTTGTATGCC 59.603 47.619 0.00 0.00 40.07 4.40
3928 6871 0.108329 AACCCTGGTACGCTGATTCG 60.108 55.000 0.00 0.00 0.00 3.34
4040 6983 1.122019 AGACCAAAGCTCCCAGTCGT 61.122 55.000 0.00 0.00 32.70 4.34
4041 6984 0.895530 TAGACCAAAGCTCCCAGTCG 59.104 55.000 0.00 0.00 32.70 4.18
4042 6985 2.167487 CTCTAGACCAAAGCTCCCAGTC 59.833 54.545 0.00 0.00 0.00 3.51
4043 6986 2.183679 CTCTAGACCAAAGCTCCCAGT 58.816 52.381 0.00 0.00 0.00 4.00
4044 6987 1.134551 GCTCTAGACCAAAGCTCCCAG 60.135 57.143 0.00 0.00 33.23 4.45
4045 6988 0.905357 GCTCTAGACCAAAGCTCCCA 59.095 55.000 0.00 0.00 33.23 4.37
4046 6989 0.179097 CGCTCTAGACCAAAGCTCCC 60.179 60.000 0.00 0.00 33.83 4.30
4047 6990 0.818296 TCGCTCTAGACCAAAGCTCC 59.182 55.000 0.00 0.00 33.83 4.70
4048 6991 1.202359 CCTCGCTCTAGACCAAAGCTC 60.202 57.143 0.00 0.00 33.83 4.09
4049 6992 0.820871 CCTCGCTCTAGACCAAAGCT 59.179 55.000 0.00 0.00 33.83 3.74
4050 6993 0.179097 CCCTCGCTCTAGACCAAAGC 60.179 60.000 0.00 0.00 0.00 3.51
4051 6994 0.179097 GCCCTCGCTCTAGACCAAAG 60.179 60.000 0.00 0.00 0.00 2.77
4052 6995 0.902984 TGCCCTCGCTCTAGACCAAA 60.903 55.000 0.00 0.00 35.36 3.28
4053 6996 1.304962 TGCCCTCGCTCTAGACCAA 60.305 57.895 0.00 0.00 35.36 3.67
4054 6997 1.754621 CTGCCCTCGCTCTAGACCA 60.755 63.158 0.00 0.00 35.36 4.02
4055 6998 1.755008 ACTGCCCTCGCTCTAGACC 60.755 63.158 0.00 0.00 35.36 3.85
4056 6999 1.032657 TCACTGCCCTCGCTCTAGAC 61.033 60.000 0.00 0.00 35.36 2.59
4057 7000 1.032657 GTCACTGCCCTCGCTCTAGA 61.033 60.000 0.00 0.00 35.36 2.43
4058 7001 1.435515 GTCACTGCCCTCGCTCTAG 59.564 63.158 0.00 0.00 35.36 2.43
4059 7002 2.407428 CGTCACTGCCCTCGCTCTA 61.407 63.158 0.00 0.00 35.36 2.43
4060 7003 3.753434 CGTCACTGCCCTCGCTCT 61.753 66.667 0.00 0.00 35.36 4.09
4061 7004 4.057428 ACGTCACTGCCCTCGCTC 62.057 66.667 0.00 0.00 35.36 5.03
4062 7005 4.363990 CACGTCACTGCCCTCGCT 62.364 66.667 0.00 0.00 35.36 4.93
4063 7006 3.858868 TTCACGTCACTGCCCTCGC 62.859 63.158 0.00 0.00 0.00 5.03
4064 7007 1.734477 CTTCACGTCACTGCCCTCG 60.734 63.158 0.00 0.00 0.00 4.63
4065 7008 2.029844 GCTTCACGTCACTGCCCTC 61.030 63.158 0.00 0.00 0.00 4.30
4066 7009 2.031163 GCTTCACGTCACTGCCCT 59.969 61.111 0.00 0.00 0.00 5.19
4067 7010 3.414700 CGCTTCACGTCACTGCCC 61.415 66.667 0.00 0.00 36.87 5.36
4068 7011 2.355837 TCGCTTCACGTCACTGCC 60.356 61.111 0.00 0.00 44.19 4.85
4069 7012 1.487452 TTGTCGCTTCACGTCACTGC 61.487 55.000 0.00 0.00 39.52 4.40
4070 7013 1.139989 ATTGTCGCTTCACGTCACTG 58.860 50.000 0.00 0.00 39.52 3.66
4071 7014 1.865865 AATTGTCGCTTCACGTCACT 58.134 45.000 0.00 0.00 39.52 3.41
4072 7015 2.298300 CAAATTGTCGCTTCACGTCAC 58.702 47.619 0.00 0.00 39.52 3.67
4073 7016 1.262950 CCAAATTGTCGCTTCACGTCA 59.737 47.619 0.00 0.00 44.19 4.35
4074 7017 1.529438 TCCAAATTGTCGCTTCACGTC 59.471 47.619 0.00 0.00 44.19 4.34
4075 7018 1.531149 CTCCAAATTGTCGCTTCACGT 59.469 47.619 0.00 0.00 44.19 4.49
4076 7019 1.725931 GCTCCAAATTGTCGCTTCACG 60.726 52.381 0.00 0.00 45.62 4.35
4077 7020 1.266718 TGCTCCAAATTGTCGCTTCAC 59.733 47.619 5.58 0.00 0.00 3.18
4078 7021 1.536766 CTGCTCCAAATTGTCGCTTCA 59.463 47.619 5.58 0.00 0.00 3.02
4079 7022 1.135575 CCTGCTCCAAATTGTCGCTTC 60.136 52.381 5.58 0.00 0.00 3.86
4080 7023 0.883833 CCTGCTCCAAATTGTCGCTT 59.116 50.000 5.58 0.00 0.00 4.68
4081 7024 1.589716 GCCTGCTCCAAATTGTCGCT 61.590 55.000 5.58 0.00 0.00 4.93
4082 7025 1.153958 GCCTGCTCCAAATTGTCGC 60.154 57.895 0.00 0.00 0.00 5.19
4083 7026 0.109597 GTGCCTGCTCCAAATTGTCG 60.110 55.000 0.00 0.00 0.00 4.35
4084 7027 0.109597 CGTGCCTGCTCCAAATTGTC 60.110 55.000 0.00 0.00 0.00 3.18
4085 7028 0.537143 TCGTGCCTGCTCCAAATTGT 60.537 50.000 0.00 0.00 0.00 2.71
4086 7029 0.109597 GTCGTGCCTGCTCCAAATTG 60.110 55.000 0.00 0.00 0.00 2.32
4087 7030 0.537143 TGTCGTGCCTGCTCCAAATT 60.537 50.000 0.00 0.00 0.00 1.82
4088 7031 0.537143 TTGTCGTGCCTGCTCCAAAT 60.537 50.000 0.00 0.00 0.00 2.32
4089 7032 1.153066 TTGTCGTGCCTGCTCCAAA 60.153 52.632 0.00 0.00 0.00 3.28
4090 7033 1.891919 GTTGTCGTGCCTGCTCCAA 60.892 57.895 0.00 0.00 0.00 3.53
4091 7034 2.280797 GTTGTCGTGCCTGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
4092 7035 3.050275 GGTTGTCGTGCCTGCTCC 61.050 66.667 0.00 0.00 0.00 4.70
4093 7036 2.031163 AGGTTGTCGTGCCTGCTC 59.969 61.111 0.00 0.00 33.13 4.26
4094 7037 2.281070 CAGGTTGTCGTGCCTGCT 60.281 61.111 0.00 0.00 44.65 4.24
4097 7040 1.003355 CCATCAGGTTGTCGTGCCT 60.003 57.895 0.00 0.00 35.04 4.75
4098 7041 3.578456 CCATCAGGTTGTCGTGCC 58.422 61.111 0.00 0.00 0.00 5.01
4108 7051 2.540515 GTCGTCATACACACCATCAGG 58.459 52.381 0.00 0.00 42.21 3.86
4109 7052 2.540515 GGTCGTCATACACACCATCAG 58.459 52.381 0.00 0.00 0.00 2.90
4110 7053 1.135228 CGGTCGTCATACACACCATCA 60.135 52.381 0.00 0.00 0.00 3.07
4111 7054 1.133598 TCGGTCGTCATACACACCATC 59.866 52.381 0.00 0.00 0.00 3.51
4112 7055 1.179152 TCGGTCGTCATACACACCAT 58.821 50.000 0.00 0.00 0.00 3.55
4113 7056 1.135228 CATCGGTCGTCATACACACCA 60.135 52.381 0.00 0.00 0.00 4.17
4114 7057 1.556564 CATCGGTCGTCATACACACC 58.443 55.000 0.00 0.00 0.00 4.16
4115 7058 0.921347 GCATCGGTCGTCATACACAC 59.079 55.000 0.00 0.00 0.00 3.82
4116 7059 0.528470 TGCATCGGTCGTCATACACA 59.472 50.000 0.00 0.00 0.00 3.72
4117 7060 1.200483 CTGCATCGGTCGTCATACAC 58.800 55.000 0.00 0.00 0.00 2.90
4118 7061 1.099689 TCTGCATCGGTCGTCATACA 58.900 50.000 0.00 0.00 0.00 2.29
4119 7062 1.478137 GTCTGCATCGGTCGTCATAC 58.522 55.000 0.00 0.00 0.00 2.39
4120 7063 0.028902 CGTCTGCATCGGTCGTCATA 59.971 55.000 0.00 0.00 0.00 2.15
4121 7064 1.226688 CGTCTGCATCGGTCGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
4122 7065 2.178273 CGTCTGCATCGGTCGTCA 59.822 61.111 0.00 0.00 0.00 4.35
4123 7066 2.152699 CACGTCTGCATCGGTCGTC 61.153 63.158 14.18 0.00 32.47 4.20
4124 7067 2.126463 CACGTCTGCATCGGTCGT 60.126 61.111 14.18 4.06 35.12 4.34
4125 7068 3.545481 GCACGTCTGCATCGGTCG 61.545 66.667 14.18 3.48 43.62 4.79
4126 7069 3.545481 CGCACGTCTGCATCGGTC 61.545 66.667 14.18 5.99 44.50 4.79
4159 7102 1.228154 AACGAGCTCAAACACCCCC 60.228 57.895 15.40 0.00 0.00 5.40
4160 7103 0.534203 TGAACGAGCTCAAACACCCC 60.534 55.000 15.40 0.00 0.00 4.95
4161 7104 0.868406 CTGAACGAGCTCAAACACCC 59.132 55.000 15.40 0.00 0.00 4.61
4162 7105 0.868406 CCTGAACGAGCTCAAACACC 59.132 55.000 15.40 0.00 0.00 4.16
4163 7106 1.527311 GTCCTGAACGAGCTCAAACAC 59.473 52.381 15.40 0.70 0.00 3.32
4164 7107 1.540363 GGTCCTGAACGAGCTCAAACA 60.540 52.381 15.40 8.84 0.00 2.83
4165 7108 1.149148 GGTCCTGAACGAGCTCAAAC 58.851 55.000 15.40 4.36 0.00 2.93
4166 7109 0.034896 GGGTCCTGAACGAGCTCAAA 59.965 55.000 15.40 0.00 0.00 2.69
4167 7110 1.671742 GGGTCCTGAACGAGCTCAA 59.328 57.895 15.40 0.00 0.00 3.02
4168 7111 2.283529 GGGGTCCTGAACGAGCTCA 61.284 63.158 15.40 0.00 30.82 4.26
4169 7112 2.579738 GGGGTCCTGAACGAGCTC 59.420 66.667 2.73 2.73 0.00 4.09
4170 7113 3.382832 CGGGGTCCTGAACGAGCT 61.383 66.667 0.00 0.00 0.00 4.09
4171 7114 3.358076 CTCGGGGTCCTGAACGAGC 62.358 68.421 10.99 0.00 44.90 5.03
4172 7115 2.885861 CTCGGGGTCCTGAACGAG 59.114 66.667 9.97 9.97 45.34 4.18
4173 7116 0.613853 AATCTCGGGGTCCTGAACGA 60.614 55.000 0.00 0.00 0.00 3.85
4174 7117 0.249398 AAATCTCGGGGTCCTGAACG 59.751 55.000 0.00 0.00 0.00 3.95
4175 7118 1.278127 TGAAATCTCGGGGTCCTGAAC 59.722 52.381 0.00 0.00 0.00 3.18
4176 7119 1.651737 TGAAATCTCGGGGTCCTGAA 58.348 50.000 0.00 0.00 0.00 3.02
4177 7120 1.651737 TTGAAATCTCGGGGTCCTGA 58.348 50.000 0.00 0.00 0.00 3.86
4178 7121 2.359900 CTTTGAAATCTCGGGGTCCTG 58.640 52.381 0.00 0.00 0.00 3.86
4179 7122 1.340114 GCTTTGAAATCTCGGGGTCCT 60.340 52.381 0.00 0.00 0.00 3.85
4180 7123 1.095600 GCTTTGAAATCTCGGGGTCC 58.904 55.000 0.00 0.00 0.00 4.46
4181 7124 1.740025 CAGCTTTGAAATCTCGGGGTC 59.260 52.381 0.00 0.00 0.00 4.46
4182 7125 1.614317 CCAGCTTTGAAATCTCGGGGT 60.614 52.381 0.00 0.00 0.00 4.95
4183 7126 1.098050 CCAGCTTTGAAATCTCGGGG 58.902 55.000 0.00 0.00 0.00 5.73
4184 7127 1.098050 CCCAGCTTTGAAATCTCGGG 58.902 55.000 0.00 3.22 0.00 5.14
4185 7128 1.826385 ACCCAGCTTTGAAATCTCGG 58.174 50.000 0.00 0.00 0.00 4.63
4186 7129 2.159653 CGAACCCAGCTTTGAAATCTCG 60.160 50.000 0.00 0.00 0.00 4.04
4187 7130 2.162408 CCGAACCCAGCTTTGAAATCTC 59.838 50.000 0.00 0.00 0.00 2.75
4188 7131 2.162681 CCGAACCCAGCTTTGAAATCT 58.837 47.619 0.00 0.00 0.00 2.40
4189 7132 1.202348 CCCGAACCCAGCTTTGAAATC 59.798 52.381 0.00 0.00 0.00 2.17
4190 7133 1.256812 CCCGAACCCAGCTTTGAAAT 58.743 50.000 0.00 0.00 0.00 2.17
4191 7134 0.825840 CCCCGAACCCAGCTTTGAAA 60.826 55.000 0.00 0.00 0.00 2.69
4192 7135 1.228429 CCCCGAACCCAGCTTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
4193 7136 2.434331 CCCCGAACCCAGCTTTGA 59.566 61.111 0.00 0.00 0.00 2.69
4194 7137 3.373565 GCCCCGAACCCAGCTTTG 61.374 66.667 0.00 0.00 0.00 2.77
4195 7138 3.580319 AGCCCCGAACCCAGCTTT 61.580 61.111 0.00 0.00 29.27 3.51
4196 7139 4.351054 CAGCCCCGAACCCAGCTT 62.351 66.667 0.00 0.00 31.93 3.74
4199 7142 3.006728 TACCAGCCCCGAACCCAG 61.007 66.667 0.00 0.00 0.00 4.45
4200 7143 3.006728 CTACCAGCCCCGAACCCA 61.007 66.667 0.00 0.00 0.00 4.51
4201 7144 3.793888 CCTACCAGCCCCGAACCC 61.794 72.222 0.00 0.00 0.00 4.11
4202 7145 1.844544 TTTCCTACCAGCCCCGAACC 61.845 60.000 0.00 0.00 0.00 3.62
4203 7146 0.392595 CTTTCCTACCAGCCCCGAAC 60.393 60.000 0.00 0.00 0.00 3.95
4204 7147 1.988015 CTTTCCTACCAGCCCCGAA 59.012 57.895 0.00 0.00 0.00 4.30
4205 7148 2.666098 GCTTTCCTACCAGCCCCGA 61.666 63.158 0.00 0.00 0.00 5.14
4206 7149 1.335132 TAGCTTTCCTACCAGCCCCG 61.335 60.000 0.00 0.00 36.62 5.73
4207 7150 0.180642 GTAGCTTTCCTACCAGCCCC 59.819 60.000 0.00 0.00 40.47 5.80
4208 7151 1.134371 CAGTAGCTTTCCTACCAGCCC 60.134 57.143 0.00 0.00 46.21 5.19
4209 7152 1.744114 GCAGTAGCTTTCCTACCAGCC 60.744 57.143 0.00 0.00 46.21 4.85
4210 7153 1.657822 GCAGTAGCTTTCCTACCAGC 58.342 55.000 0.00 0.00 46.21 4.85
4211 7154 1.555075 TGGCAGTAGCTTTCCTACCAG 59.445 52.381 0.00 0.00 46.21 4.00
4212 7155 1.651737 TGGCAGTAGCTTTCCTACCA 58.348 50.000 0.00 0.00 46.21 3.25
4213 7156 2.565841 CATGGCAGTAGCTTTCCTACC 58.434 52.381 0.00 0.00 46.21 3.18
4214 7157 2.092914 ACCATGGCAGTAGCTTTCCTAC 60.093 50.000 13.04 0.00 45.55 3.18
4215 7158 2.196595 ACCATGGCAGTAGCTTTCCTA 58.803 47.619 13.04 0.00 41.70 2.94
4216 7159 0.995024 ACCATGGCAGTAGCTTTCCT 59.005 50.000 13.04 0.00 41.70 3.36
4217 7160 2.289565 GTACCATGGCAGTAGCTTTCC 58.710 52.381 13.04 0.00 41.70 3.13
4218 7161 2.092914 AGGTACCATGGCAGTAGCTTTC 60.093 50.000 15.94 0.00 44.02 2.62
4219 7162 1.916181 AGGTACCATGGCAGTAGCTTT 59.084 47.619 15.94 0.00 44.02 3.51
4220 7163 1.584724 AGGTACCATGGCAGTAGCTT 58.415 50.000 15.94 0.00 44.02 3.74
4221 7164 3.324246 AGGTACCATGGCAGTAGCT 57.676 52.632 15.94 9.22 42.23 3.32
4222 7165 1.668419 CAAGGTACCATGGCAGTAGC 58.332 55.000 15.94 6.81 38.25 3.58
4223 7166 1.134098 CCCAAGGTACCATGGCAGTAG 60.134 57.143 27.57 12.04 34.86 2.57
4224 7167 0.916086 CCCAAGGTACCATGGCAGTA 59.084 55.000 27.57 0.00 34.86 2.74
4225 7168 1.691219 CCCAAGGTACCATGGCAGT 59.309 57.895 27.57 0.00 34.86 4.40
4226 7169 1.754234 GCCCAAGGTACCATGGCAG 60.754 63.158 27.57 17.28 34.86 4.85
4227 7170 2.358619 GCCCAAGGTACCATGGCA 59.641 61.111 27.57 0.00 34.86 4.92
4228 7171 2.442087 GGCCCAAGGTACCATGGC 60.442 66.667 27.57 25.54 34.86 4.40
4229 7172 0.991355 TAGGGCCCAAGGTACCATGG 60.991 60.000 26.31 26.31 35.82 3.66
4230 7173 2.627771 TAGGGCCCAAGGTACCATG 58.372 57.895 27.56 12.93 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.