Multiple sequence alignment - TraesCS7D01G029100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G029100 chr7D 100.000 6130 0 0 1 6130 14553009 14546880 0.000000e+00 11321.0
1 TraesCS7D01G029100 chr7D 94.823 734 34 3 5398 6130 14167507 14166777 0.000000e+00 1142.0
2 TraesCS7D01G029100 chr7D 94.688 640 18 7 2787 3419 184482563 184483193 0.000000e+00 979.0
3 TraesCS7D01G029100 chr7D 76.608 171 25 6 5327 5482 194693277 194693107 5.090000e-11 80.5
4 TraesCS7D01G029100 chr1B 89.200 2213 158 35 3417 5576 45199935 45197751 0.000000e+00 2687.0
5 TraesCS7D01G029100 chr1B 95.664 738 22 3 2689 3419 143631212 143630478 0.000000e+00 1177.0
6 TraesCS7D01G029100 chr1B 84.952 1143 106 32 1024 2130 45201401 45200289 0.000000e+00 1098.0
7 TraesCS7D01G029100 chr1B 84.966 745 95 12 4874 5604 45032454 45031713 0.000000e+00 739.0
8 TraesCS7D01G029100 chr1B 84.832 745 96 10 4874 5604 44989365 44988624 0.000000e+00 734.0
9 TraesCS7D01G029100 chr1B 92.500 360 22 3 2312 2669 45200303 45199947 1.520000e-140 510.0
10 TraesCS7D01G029100 chr1B 80.183 328 36 18 956 1261 297184298 297183978 1.030000e-52 219.0
11 TraesCS7D01G029100 chr4A 93.636 1760 77 14 4401 6130 722412700 722414454 0.000000e+00 2597.0
12 TraesCS7D01G029100 chr4A 91.929 1016 56 10 3417 4408 722411000 722412013 0.000000e+00 1399.0
13 TraesCS7D01G029100 chr4A 90.059 845 62 7 1299 2122 722409811 722410654 0.000000e+00 1075.0
14 TraesCS7D01G029100 chr4A 91.633 753 22 18 2674 3419 210994358 210995076 0.000000e+00 1003.0
15 TraesCS7D01G029100 chr4A 94.915 354 16 1 2321 2674 722410653 722411004 2.500000e-153 553.0
16 TraesCS7D01G029100 chr4A 86.243 378 45 5 1 374 722376427 722376801 2.660000e-108 403.0
17 TraesCS7D01G029100 chr4A 84.104 346 29 15 747 1091 722409015 722409335 1.660000e-80 311.0
18 TraesCS7D01G029100 chr4A 94.444 198 10 1 2130 2326 114586281 114586478 2.780000e-78 303.0
19 TraesCS7D01G029100 chr7A 91.110 1451 70 21 3423 4818 13799908 13798462 0.000000e+00 1910.0
20 TraesCS7D01G029100 chr7A 94.413 716 16 13 2711 3419 53626079 53625381 0.000000e+00 1079.0
21 TraesCS7D01G029100 chr7A 92.440 754 41 9 4865 5617 13798317 13797579 0.000000e+00 1062.0
22 TraesCS7D01G029100 chr7A 90.746 778 57 10 1355 2129 13801022 13800257 0.000000e+00 1024.0
23 TraesCS7D01G029100 chr7A 95.317 363 17 0 2312 2674 13800272 13799910 1.480000e-160 577.0
24 TraesCS7D01G029100 chr7A 82.570 677 83 14 1 644 13802972 13802298 1.150000e-156 564.0
25 TraesCS7D01G029100 chr7A 89.462 446 35 4 5154 5589 13776920 13776477 2.500000e-153 553.0
26 TraesCS7D01G029100 chr7A 84.729 406 44 10 5708 6102 13797415 13797017 2.070000e-104 390.0
27 TraesCS7D01G029100 chr7A 92.093 215 10 7 2115 2323 105168793 105169006 4.650000e-76 296.0
28 TraesCS7D01G029100 chr7A 81.030 369 26 19 747 1091 13801907 13801559 2.840000e-63 254.0
29 TraesCS7D01G029100 chr6D 96.806 720 10 5 2707 3419 255020183 255019470 0.000000e+00 1190.0
30 TraesCS7D01G029100 chr3B 95.576 746 21 4 2682 3420 193616843 193617583 0.000000e+00 1184.0
31 TraesCS7D01G029100 chr3B 88.333 120 14 0 1963 2082 727476560 727476441 1.780000e-30 145.0
32 TraesCS7D01G029100 chr2B 95.219 753 22 5 2674 3419 23312288 23311543 0.000000e+00 1179.0
33 TraesCS7D01G029100 chr2B 89.189 148 14 1 2682 2829 472897511 472897656 3.770000e-42 183.0
34 TraesCS7D01G029100 chr2B 100.000 29 0 0 5706 5734 611313143 611313171 3.000000e-03 54.7
35 TraesCS7D01G029100 chr5A 93.324 734 28 9 2694 3419 533749301 533748581 0.000000e+00 1064.0
36 TraesCS7D01G029100 chr5A 95.312 192 7 2 2125 2314 664552837 664553028 2.780000e-78 303.0
37 TraesCS7D01G029100 chr5A 94.444 198 7 4 2130 2326 13889431 13889625 9.990000e-78 302.0
38 TraesCS7D01G029100 chr5A 86.425 221 26 4 1355 1573 150806564 150806346 7.940000e-59 239.0
39 TraesCS7D01G029100 chr5A 81.538 130 12 5 3625 3753 565256187 565256069 5.060000e-16 97.1
40 TraesCS7D01G029100 chr5B 92.338 757 34 6 2682 3423 294755271 294756018 0.000000e+00 1055.0
41 TraesCS7D01G029100 chr5B 94.059 202 10 2 2121 2320 660145616 660145817 7.720000e-79 305.0
42 TraesCS7D01G029100 chr5B 100.000 29 0 0 5681 5709 511619643 511619671 3.000000e-03 54.7
43 TraesCS7D01G029100 chr3A 92.035 565 15 6 2667 3228 645995351 645994814 0.000000e+00 767.0
44 TraesCS7D01G029100 chrUn 85.175 742 93 12 4874 5601 249818037 249818775 0.000000e+00 745.0
45 TraesCS7D01G029100 chr1A 84.823 481 43 14 5253 5709 29010972 29010498 2.010000e-124 457.0
46 TraesCS7D01G029100 chr1A 93.237 207 11 1 2134 2337 515551301 515551507 9.990000e-78 302.0
47 TraesCS7D01G029100 chr7B 94.872 195 8 2 2117 2310 112029616 112029423 2.780000e-78 303.0
48 TraesCS7D01G029100 chr6B 93.596 203 8 5 2119 2317 93384509 93384710 1.290000e-76 298.0
49 TraesCS7D01G029100 chr4D 90.351 228 16 6 2091 2314 478512407 478512182 1.670000e-75 294.0
50 TraesCS7D01G029100 chr1D 78.774 212 21 18 3215 3419 382763310 382763504 3.000000e-23 121.0
51 TraesCS7D01G029100 chr4B 88.889 54 2 4 3629 3680 571608205 571608154 5.130000e-06 63.9
52 TraesCS7D01G029100 chr6A 89.583 48 1 4 4562 4605 497474261 497474308 2.390000e-04 58.4
53 TraesCS7D01G029100 chr2D 100.000 29 0 0 5706 5734 519340803 519340831 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G029100 chr7D 14546880 14553009 6129 True 11321.000000 11321 100.000000 1 6130 1 chr7D.!!$R2 6129
1 TraesCS7D01G029100 chr7D 14166777 14167507 730 True 1142.000000 1142 94.823000 5398 6130 1 chr7D.!!$R1 732
2 TraesCS7D01G029100 chr7D 184482563 184483193 630 False 979.000000 979 94.688000 2787 3419 1 chr7D.!!$F1 632
3 TraesCS7D01G029100 chr1B 45197751 45201401 3650 True 1431.666667 2687 88.884000 1024 5576 3 chr1B.!!$R5 4552
4 TraesCS7D01G029100 chr1B 143630478 143631212 734 True 1177.000000 1177 95.664000 2689 3419 1 chr1B.!!$R3 730
5 TraesCS7D01G029100 chr1B 45031713 45032454 741 True 739.000000 739 84.966000 4874 5604 1 chr1B.!!$R2 730
6 TraesCS7D01G029100 chr1B 44988624 44989365 741 True 734.000000 734 84.832000 4874 5604 1 chr1B.!!$R1 730
7 TraesCS7D01G029100 chr4A 722409015 722414454 5439 False 1187.000000 2597 90.928600 747 6130 5 chr4A.!!$F4 5383
8 TraesCS7D01G029100 chr4A 210994358 210995076 718 False 1003.000000 1003 91.633000 2674 3419 1 chr4A.!!$F2 745
9 TraesCS7D01G029100 chr7A 53625381 53626079 698 True 1079.000000 1079 94.413000 2711 3419 1 chr7A.!!$R2 708
10 TraesCS7D01G029100 chr7A 13797017 13802972 5955 True 825.857143 1910 88.277429 1 6102 7 chr7A.!!$R3 6101
11 TraesCS7D01G029100 chr6D 255019470 255020183 713 True 1190.000000 1190 96.806000 2707 3419 1 chr6D.!!$R1 712
12 TraesCS7D01G029100 chr3B 193616843 193617583 740 False 1184.000000 1184 95.576000 2682 3420 1 chr3B.!!$F1 738
13 TraesCS7D01G029100 chr2B 23311543 23312288 745 True 1179.000000 1179 95.219000 2674 3419 1 chr2B.!!$R1 745
14 TraesCS7D01G029100 chr5A 533748581 533749301 720 True 1064.000000 1064 93.324000 2694 3419 1 chr5A.!!$R2 725
15 TraesCS7D01G029100 chr5B 294755271 294756018 747 False 1055.000000 1055 92.338000 2682 3423 1 chr5B.!!$F1 741
16 TraesCS7D01G029100 chr3A 645994814 645995351 537 True 767.000000 767 92.035000 2667 3228 1 chr3A.!!$R1 561
17 TraesCS7D01G029100 chrUn 249818037 249818775 738 False 745.000000 745 85.175000 4874 5601 1 chrUn.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 702 0.108585 TGCAGAACCAGGAGAACACC 59.891 55.000 0.00 0.0 0.00 4.16 F
1482 2149 0.100325 TTTCCTGTGTTGTTGCTGCG 59.900 50.000 0.00 0.0 0.00 5.18 F
2189 2886 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.0 0.00 2.69 F
3044 3765 0.106015 TGAGAGATCCATCGCTGGGA 60.106 55.000 5.28 0.0 43.34 4.37 F
4641 6124 1.063616 CGTGAGCATCTTCAATGCCAG 59.936 52.381 6.40 0.0 45.59 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 2199 0.034186 ATTTTCCCAGCTCGCCATCA 60.034 50.000 0.00 0.0 0.00 3.07 R
2283 2980 0.882042 CAGCCCGGTGCATGTATCTC 60.882 60.000 15.92 0.0 44.83 2.75 R
3106 3833 0.911525 ACCATCCACACTCCCTCCTG 60.912 60.000 0.00 0.0 0.00 3.86 R
4823 6345 0.663153 AACGAAACTGAGTTGCCAGC 59.337 50.000 0.00 0.0 37.68 4.85 R
5897 7634 2.157738 CTGCTCCCTGGAAAGTCAAAG 58.842 52.381 0.00 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 4.891168 TCTTGTAGAAAGGTTCCCAAAACC 59.109 41.667 0.00 0.00 40.58 3.27
43 45 1.037493 AGAAAGGTTCCCAAAACCGC 58.963 50.000 1.52 0.00 44.82 5.68
51 53 2.517650 TCCCAAAACCGCAAACAATC 57.482 45.000 0.00 0.00 0.00 2.67
55 60 3.243569 CCCAAAACCGCAAACAATCTACA 60.244 43.478 0.00 0.00 0.00 2.74
76 81 6.582677 ACATACATAGTCTAGTCTGATGGC 57.417 41.667 0.00 0.00 0.00 4.40
99 104 5.724328 CCTGCACTGTTATGTTTAGAGAGA 58.276 41.667 0.00 0.00 0.00 3.10
103 108 6.591448 TGCACTGTTATGTTTAGAGAGATGTG 59.409 38.462 0.00 0.00 0.00 3.21
107 112 2.672961 TGTTTAGAGAGATGTGCCCG 57.327 50.000 0.00 0.00 0.00 6.13
109 114 2.166459 TGTTTAGAGAGATGTGCCCGAG 59.834 50.000 0.00 0.00 0.00 4.63
119 124 3.612251 TGCCCGAGGTACTAGCAC 58.388 61.111 0.00 0.00 41.55 4.40
152 157 6.183360 ACGAAATCACTAGTTAAGCGATACCT 60.183 38.462 0.00 0.00 0.00 3.08
155 160 6.963083 ATCACTAGTTAAGCGATACCTCTT 57.037 37.500 0.00 0.00 0.00 2.85
177 183 2.162681 CAAAGCTTACTCCCCACCTTG 58.837 52.381 0.00 0.00 0.00 3.61
186 192 3.256704 ACTCCCCACCTTGTCTGATTTA 58.743 45.455 0.00 0.00 0.00 1.40
194 200 6.015519 CCCACCTTGTCTGATTTAACAAATGA 60.016 38.462 0.00 0.00 35.13 2.57
202 208 9.500785 TGTCTGATTTAACAAATGACATACTCA 57.499 29.630 0.00 0.00 32.28 3.41
207 213 8.915871 ATTTAACAAATGACATACTCATGTGC 57.084 30.769 1.11 0.00 45.61 4.57
208 214 4.604843 ACAAATGACATACTCATGTGCG 57.395 40.909 1.11 0.00 45.61 5.34
209 215 4.002982 ACAAATGACATACTCATGTGCGT 58.997 39.130 1.11 0.00 45.61 5.24
211 217 3.525268 ATGACATACTCATGTGCGTCA 57.475 42.857 14.03 14.03 45.58 4.35
212 218 2.606108 TGACATACTCATGTGCGTCAC 58.394 47.619 9.79 3.44 45.58 3.67
213 219 2.231235 TGACATACTCATGTGCGTCACT 59.769 45.455 10.54 0.00 45.58 3.41
214 220 3.442273 TGACATACTCATGTGCGTCACTA 59.558 43.478 10.54 0.00 45.58 2.74
215 221 4.033990 ACATACTCATGTGCGTCACTAG 57.966 45.455 10.54 0.00 43.89 2.57
216 222 2.561733 TACTCATGTGCGTCACTAGC 57.438 50.000 10.54 0.00 35.11 3.42
233 240 1.680338 AGCCGCAATATGGGAGTTTC 58.320 50.000 0.00 0.00 31.21 2.78
252 259 8.467598 GGAGTTTCCCTTTTTCCATAGATTAAC 58.532 37.037 0.00 0.00 0.00 2.01
253 260 8.362464 AGTTTCCCTTTTTCCATAGATTAACC 57.638 34.615 0.00 0.00 0.00 2.85
259 266 8.811994 CCCTTTTTCCATAGATTAACCTTTCAA 58.188 33.333 0.00 0.00 0.00 2.69
260 267 9.860898 CCTTTTTCCATAGATTAACCTTTCAAG 57.139 33.333 0.00 0.00 0.00 3.02
283 290 9.775854 CAAGATATTCTATCTCTTGAACCATGT 57.224 33.333 5.78 0.00 45.57 3.21
286 293 9.553064 GATATTCTATCTCTTGAACCATGTGTT 57.447 33.333 0.00 0.00 40.81 3.32
308 315 2.993899 CGAATACCGAACTGCTTTCACT 59.006 45.455 0.00 0.00 41.76 3.41
320 327 6.212888 ACTGCTTTCACTGTTTGATTTCTT 57.787 33.333 0.00 0.00 32.84 2.52
321 328 6.038356 ACTGCTTTCACTGTTTGATTTCTTG 58.962 36.000 0.00 0.00 32.84 3.02
324 331 7.715657 TGCTTTCACTGTTTGATTTCTTGTAT 58.284 30.769 0.00 0.00 32.84 2.29
329 336 7.151976 TCACTGTTTGATTTCTTGTATCGAGA 58.848 34.615 0.00 0.00 0.00 4.04
445 477 4.843624 AAAAAGGGAGCCCGGAAG 57.156 55.556 0.73 0.00 41.95 3.46
447 479 2.366153 AAAAAGGGAGCCCGGAAGCA 62.366 55.000 0.73 0.00 41.95 3.91
455 487 3.055719 CCCGGAAGCACGCATTGT 61.056 61.111 0.73 0.00 0.00 2.71
490 522 1.448985 TTTGGAAGCATAGGTCGTGC 58.551 50.000 0.00 0.00 42.81 5.34
541 574 6.830873 GCAAATCTATGCTCCTATTGGAAT 57.169 37.500 0.00 0.00 42.66 3.01
543 576 6.432162 GCAAATCTATGCTCCTATTGGAATCA 59.568 38.462 0.00 0.00 42.66 2.57
572 605 0.179029 CCCGGGAAGAACAACTGTGT 60.179 55.000 18.48 0.00 40.75 3.72
590 623 6.742109 ACTGTGTTTCTCATGGAAGAAAATG 58.258 36.000 10.29 5.28 44.54 2.32
593 626 5.403466 GTGTTTCTCATGGAAGAAAATGTGC 59.597 40.000 10.29 1.10 44.54 4.57
616 649 3.424962 GCTTTCACACGGAGTAAATCTGC 60.425 47.826 0.00 0.00 41.61 4.26
627 660 1.398390 GTAAATCTGCGCTTCTGGTGG 59.602 52.381 9.73 0.00 0.00 4.61
628 661 0.962356 AAATCTGCGCTTCTGGTGGG 60.962 55.000 9.73 0.00 0.00 4.61
634 667 2.431683 GCTTCTGGTGGGAGCACA 59.568 61.111 0.00 0.00 0.00 4.57
661 694 1.703411 TTTTCCCTTGCAGAACCAGG 58.297 50.000 0.00 0.00 0.00 4.45
662 695 0.850100 TTTCCCTTGCAGAACCAGGA 59.150 50.000 2.79 0.00 0.00 3.86
663 696 0.401738 TTCCCTTGCAGAACCAGGAG 59.598 55.000 2.79 0.00 0.00 3.69
664 697 0.473694 TCCCTTGCAGAACCAGGAGA 60.474 55.000 2.79 0.00 0.00 3.71
665 698 0.401738 CCCTTGCAGAACCAGGAGAA 59.598 55.000 2.79 0.00 0.00 2.87
666 699 1.528129 CCTTGCAGAACCAGGAGAAC 58.472 55.000 0.00 0.00 0.00 3.01
668 701 1.876156 CTTGCAGAACCAGGAGAACAC 59.124 52.381 0.00 0.00 0.00 3.32
669 702 0.108585 TGCAGAACCAGGAGAACACC 59.891 55.000 0.00 0.00 0.00 4.16
670 703 0.951040 GCAGAACCAGGAGAACACCG 60.951 60.000 0.00 0.00 34.73 4.94
677 734 2.171870 ACCAGGAGAACACCGAAAAAGA 59.828 45.455 0.00 0.00 34.73 2.52
683 740 3.211865 AGAACACCGAAAAAGAGGGAAC 58.788 45.455 0.00 0.00 0.00 3.62
699 756 5.745227 GAGGGAACATCCATCTAAAACTCA 58.255 41.667 3.91 0.00 43.53 3.41
709 766 8.918658 CATCCATCTAAAACTCAAAAACACATG 58.081 33.333 0.00 0.00 0.00 3.21
711 768 6.700960 CCATCTAAAACTCAAAAACACATGCA 59.299 34.615 0.00 0.00 0.00 3.96
712 769 7.385752 CCATCTAAAACTCAAAAACACATGCAT 59.614 33.333 0.00 0.00 0.00 3.96
714 771 9.979578 ATCTAAAACTCAAAAACACATGCATAA 57.020 25.926 0.00 0.00 0.00 1.90
715 772 9.809096 TCTAAAACTCAAAAACACATGCATAAA 57.191 25.926 0.00 0.00 0.00 1.40
772 1103 3.242969 CGCCATTGTAGTAGTCTAGCGAA 60.243 47.826 0.00 0.00 37.74 4.70
792 1123 1.006281 AGCAGAATGAATGGGCCTTGA 59.994 47.619 4.53 0.00 39.69 3.02
806 1137 3.115370 GCCTTGAGGACCTGAGTCAGG 62.115 61.905 33.47 33.47 45.48 3.86
922 1253 2.905260 CGAAAGCGTATAAGGAAGCG 57.095 50.000 0.00 0.00 34.34 4.68
1026 1381 2.355193 GCCGTCCTCTGAAGAGCCT 61.355 63.158 1.54 0.00 40.75 4.58
1092 1447 2.890474 GTCATAGGTGCGTGCGGG 60.890 66.667 0.00 0.00 0.00 6.13
1093 1448 4.830765 TCATAGGTGCGTGCGGGC 62.831 66.667 0.00 0.00 0.00 6.13
1114 1488 2.019272 ATCCCCTCCCTACCTCCGT 61.019 63.158 0.00 0.00 0.00 4.69
1115 1489 2.021318 ATCCCCTCCCTACCTCCGTC 62.021 65.000 0.00 0.00 0.00 4.79
1117 1491 2.518825 CCTCCCTACCTCCGTCGG 60.519 72.222 4.39 4.39 0.00 4.79
1136 1510 3.434319 GCCGCTGCTGCTTGCTTA 61.434 61.111 14.03 0.00 43.37 3.09
1137 1511 2.482374 CCGCTGCTGCTTGCTTAC 59.518 61.111 14.03 0.00 43.37 2.34
1138 1512 2.327343 CCGCTGCTGCTTGCTTACA 61.327 57.895 14.03 0.00 43.37 2.41
1139 1513 1.154338 CGCTGCTGCTTGCTTACAC 60.154 57.895 14.03 0.00 43.37 2.90
1142 1516 1.516161 CTGCTGCTTGCTTACACTGA 58.484 50.000 0.00 0.00 43.37 3.41
1143 1517 1.463831 CTGCTGCTTGCTTACACTGAG 59.536 52.381 0.00 0.00 43.37 3.35
1144 1518 1.070601 TGCTGCTTGCTTACACTGAGA 59.929 47.619 0.00 0.00 43.37 3.27
1145 1519 2.289882 TGCTGCTTGCTTACACTGAGAT 60.290 45.455 0.00 0.00 43.37 2.75
1146 1520 2.095532 GCTGCTTGCTTACACTGAGATG 59.904 50.000 0.00 0.00 38.95 2.90
1147 1521 3.332919 CTGCTTGCTTACACTGAGATGT 58.667 45.455 0.00 0.00 36.56 3.06
1148 1522 3.743521 TGCTTGCTTACACTGAGATGTT 58.256 40.909 0.00 0.00 33.85 2.71
1149 1523 3.499537 TGCTTGCTTACACTGAGATGTTG 59.500 43.478 0.00 0.00 33.85 3.33
1150 1524 3.499918 GCTTGCTTACACTGAGATGTTGT 59.500 43.478 0.00 0.00 33.85 3.32
1151 1525 4.377841 GCTTGCTTACACTGAGATGTTGTC 60.378 45.833 0.00 0.00 33.85 3.18
1152 1526 3.317150 TGCTTACACTGAGATGTTGTCG 58.683 45.455 0.00 0.00 33.85 4.35
1153 1527 3.243737 TGCTTACACTGAGATGTTGTCGT 60.244 43.478 0.00 0.00 33.85 4.34
1158 1532 2.221749 CACTGAGATGTTGTCGTTGTGG 59.778 50.000 0.00 0.00 0.00 4.17
1254 1639 0.460284 GCCGACGAATCCATGTCAGT 60.460 55.000 0.00 0.00 34.78 3.41
1255 1640 1.280982 CCGACGAATCCATGTCAGTG 58.719 55.000 0.00 0.00 34.78 3.66
1256 1641 0.647410 CGACGAATCCATGTCAGTGC 59.353 55.000 0.00 0.00 34.78 4.40
1257 1642 1.009829 GACGAATCCATGTCAGTGCC 58.990 55.000 0.00 0.00 35.20 5.01
1258 1643 0.392998 ACGAATCCATGTCAGTGCCC 60.393 55.000 0.00 0.00 0.00 5.36
1259 1644 1.097547 CGAATCCATGTCAGTGCCCC 61.098 60.000 0.00 0.00 0.00 5.80
1283 1668 2.317378 CCCCTCCCCCTTTTCCCTC 61.317 68.421 0.00 0.00 0.00 4.30
1295 1680 2.876033 TTTCCCTCCCCATCCCCCTC 62.876 65.000 0.00 0.00 0.00 4.30
1310 1960 2.310052 CCCCCTCTTGGTTCAGAATTCT 59.690 50.000 0.88 0.88 0.00 2.40
1311 1961 3.615155 CCCCTCTTGGTTCAGAATTCTC 58.385 50.000 4.57 0.00 0.00 2.87
1326 1981 6.868864 TCAGAATTCTCAACTTAGAAACGGAG 59.131 38.462 4.57 0.00 38.90 4.63
1341 2000 0.247736 CGGAGGAGCAGCTACTTGTT 59.752 55.000 9.12 0.00 0.00 2.83
1345 2004 2.935201 GAGGAGCAGCTACTTGTTGATG 59.065 50.000 9.12 0.00 0.00 3.07
1348 2007 3.070018 GAGCAGCTACTTGTTGATGTGT 58.930 45.455 0.00 0.00 0.00 3.72
1390 2056 6.132658 TGGCCATGTTGTTATGTGGTAATAT 58.867 36.000 0.00 0.00 34.23 1.28
1413 2079 4.840005 GCCCACTAGCTCGGTGCC 62.840 72.222 12.56 4.38 44.23 5.01
1414 2080 3.390521 CCCACTAGCTCGGTGCCA 61.391 66.667 12.56 0.00 44.23 4.92
1442 2109 4.641989 GCACAATACAGTGGAGATTGGATT 59.358 41.667 15.14 0.00 39.87 3.01
1443 2110 5.822519 GCACAATACAGTGGAGATTGGATTA 59.177 40.000 15.14 0.00 39.87 1.75
1482 2149 0.100325 TTTCCTGTGTTGTTGCTGCG 59.900 50.000 0.00 0.00 0.00 5.18
1524 2194 0.945743 GCATCATAGATGCGTCGCCA 60.946 55.000 15.88 3.10 35.17 5.69
1529 2199 2.138320 CATAGATGCGTCGCCAGAATT 58.862 47.619 15.88 0.00 0.00 2.17
1560 2230 3.306294 GCTGGGAAAATTTAGCAGCAGTT 60.306 43.478 0.00 0.00 36.24 3.16
1676 2360 3.748048 TCAGTTTTCTTTGGATGCTCTCG 59.252 43.478 0.00 0.00 0.00 4.04
1755 2439 0.959553 CTCGGTACCATGGCGACTAT 59.040 55.000 13.04 0.00 0.00 2.12
1773 2457 2.622064 ATAAAGGCCTCCACATCGAC 57.378 50.000 5.23 0.00 0.00 4.20
1776 2460 1.201429 AAGGCCTCCACATCGACCTT 61.201 55.000 5.23 0.00 32.73 3.50
1779 2463 0.535335 GCCTCCACATCGACCTTGTA 59.465 55.000 0.00 0.00 0.00 2.41
1816 2500 3.118738 CCCTGTGCTCGGTAAGTTCTTAT 60.119 47.826 0.00 0.00 0.00 1.73
1819 2503 4.744570 TGTGCTCGGTAAGTTCTTATCAG 58.255 43.478 4.14 2.41 0.00 2.90
1826 2510 5.361571 TCGGTAAGTTCTTATCAGTATGCCA 59.638 40.000 4.14 0.00 34.76 4.92
1877 2562 4.667573 TCTCTGTGGATCAGTGTAGTTCT 58.332 43.478 0.00 0.00 43.97 3.01
1886 2571 6.269077 TGGATCAGTGTAGTTCTGTTTTCCTA 59.731 38.462 0.00 0.00 33.44 2.94
1889 2574 7.962964 TCAGTGTAGTTCTGTTTTCCTAATG 57.037 36.000 0.00 0.00 34.86 1.90
2061 2757 3.196901 ACCTTATCATCAACGCTGGTACA 59.803 43.478 0.00 0.00 0.00 2.90
2083 2779 2.817844 GCTGGTGGTTTTAAGGTAGTGG 59.182 50.000 0.00 0.00 0.00 4.00
2126 2823 9.950680 ATTTATGCTACTGTTTGTGCATATTAC 57.049 29.630 13.75 0.00 41.03 1.89
2127 2824 8.499403 TTATGCTACTGTTTGTGCATATTACA 57.501 30.769 13.75 0.00 41.03 2.41
2128 2825 6.809630 TGCTACTGTTTGTGCATATTACAA 57.190 33.333 0.00 0.00 36.34 2.41
2129 2826 7.208225 TGCTACTGTTTGTGCATATTACAAA 57.792 32.000 9.77 9.77 43.50 2.83
2130 2827 7.652727 TGCTACTGTTTGTGCATATTACAAAA 58.347 30.769 13.71 6.75 46.10 2.44
2132 2829 7.273381 GCTACTGTTTGTGCATATTACAAAAGG 59.727 37.037 13.71 11.98 46.10 3.11
2133 2830 6.454795 ACTGTTTGTGCATATTACAAAAGGG 58.545 36.000 13.71 10.33 46.10 3.95
2136 2833 6.042093 TGTTTGTGCATATTACAAAAGGGGAA 59.958 34.615 13.71 0.00 46.10 3.97
2137 2834 5.652994 TGTGCATATTACAAAAGGGGAAC 57.347 39.130 0.00 0.00 0.00 3.62
2138 2835 5.329399 TGTGCATATTACAAAAGGGGAACT 58.671 37.500 0.00 0.00 0.00 3.01
2139 2836 5.777732 TGTGCATATTACAAAAGGGGAACTT 59.222 36.000 0.00 0.00 42.52 2.66
2146 2843 2.197324 AAGGGGAACTTTGGCGCA 59.803 55.556 10.83 0.00 35.35 6.09
2147 2844 1.903404 AAGGGGAACTTTGGCGCAG 60.903 57.895 10.83 0.00 35.35 5.18
2148 2845 2.597510 GGGGAACTTTGGCGCAGT 60.598 61.111 10.83 0.09 0.00 4.40
2149 2846 2.644992 GGGAACTTTGGCGCAGTG 59.355 61.111 10.83 0.00 0.00 3.66
2150 2847 2.644992 GGAACTTTGGCGCAGTGG 59.355 61.111 10.83 0.00 0.00 4.00
2151 2848 2.193536 GGAACTTTGGCGCAGTGGT 61.194 57.895 10.83 0.00 0.00 4.16
2152 2849 0.887387 GGAACTTTGGCGCAGTGGTA 60.887 55.000 10.83 0.00 0.00 3.25
2153 2850 0.948678 GAACTTTGGCGCAGTGGTAA 59.051 50.000 10.83 0.00 0.00 2.85
2154 2851 1.335496 GAACTTTGGCGCAGTGGTAAA 59.665 47.619 10.83 0.00 0.00 2.01
2155 2852 0.951558 ACTTTGGCGCAGTGGTAAAG 59.048 50.000 10.83 11.58 35.18 1.85
2156 2853 0.387239 CTTTGGCGCAGTGGTAAAGC 60.387 55.000 10.83 0.00 0.00 3.51
2157 2854 0.821711 TTTGGCGCAGTGGTAAAGCT 60.822 50.000 10.83 0.00 0.00 3.74
2158 2855 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2163 2860 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2164 2861 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2165 2862 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2166 2863 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2167 2864 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2168 2865 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2169 2866 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2170 2867 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2171 2868 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2172 2869 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2173 2870 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2174 2871 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2175 2872 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2176 2873 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2177 2874 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2187 2884 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2188 2885 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2189 2886 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2190 2887 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2191 2888 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2192 2889 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2193 2890 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2194 2891 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2195 2892 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2196 2893 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2197 2894 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2198 2895 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2199 2896 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
2200 2897 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
2201 2898 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
2217 2914 6.317789 TGGAAACAGCTTCTTACAGAATTG 57.682 37.500 0.00 0.00 32.28 2.32
2218 2915 5.827797 TGGAAACAGCTTCTTACAGAATTGT 59.172 36.000 0.00 0.00 35.09 2.71
2219 2916 6.995686 TGGAAACAGCTTCTTACAGAATTGTA 59.004 34.615 0.00 0.00 33.58 2.41
2220 2917 7.173218 TGGAAACAGCTTCTTACAGAATTGTAG 59.827 37.037 0.00 0.00 37.15 2.74
2221 2918 7.361286 GGAAACAGCTTCTTACAGAATTGTAGG 60.361 40.741 0.00 0.00 40.68 3.18
2222 2919 5.491982 ACAGCTTCTTACAGAATTGTAGGG 58.508 41.667 0.00 0.00 40.68 3.53
2223 2920 5.248477 ACAGCTTCTTACAGAATTGTAGGGA 59.752 40.000 0.00 0.00 40.68 4.20
2224 2921 6.173339 CAGCTTCTTACAGAATTGTAGGGAA 58.827 40.000 0.00 2.63 40.68 3.97
2225 2922 6.655003 CAGCTTCTTACAGAATTGTAGGGAAA 59.345 38.462 0.00 0.00 40.68 3.13
2226 2923 6.881602 AGCTTCTTACAGAATTGTAGGGAAAG 59.118 38.462 0.00 0.00 40.68 2.62
2227 2924 6.094186 GCTTCTTACAGAATTGTAGGGAAAGG 59.906 42.308 0.00 0.00 40.68 3.11
2228 2925 5.497474 TCTTACAGAATTGTAGGGAAAGGC 58.503 41.667 0.00 0.00 40.68 4.35
2229 2926 5.250774 TCTTACAGAATTGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 40.68 4.58
2230 2927 3.690460 ACAGAATTGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 35.25 4.85
2231 2928 2.424956 CAGAATTGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2232 2929 1.401905 GAATTGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2233 2930 0.328258 ATTGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2234 2931 0.978151 TTGTAGGGAAAGGCTGCGTA 59.022 50.000 0.00 0.00 0.00 4.42
2235 2932 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2236 2933 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2237 2934 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2238 2935 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2239 2936 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2240 2937 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2241 2938 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2242 2939 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2243 2940 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2244 2941 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2245 2942 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2246 2943 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2247 2944 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2248 2945 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2249 2946 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2250 2947 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2251 2948 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2252 2949 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2257 2954 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2258 2955 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2259 2956 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2260 2957 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2261 2958 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2262 2959 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2263 2960 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2264 2961 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2265 2962 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2272 2969 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2291 2988 4.758692 CGCAAGCGGGAGATACAT 57.241 55.556 6.55 0.00 35.56 2.29
2292 2989 2.229039 CGCAAGCGGGAGATACATG 58.771 57.895 6.55 0.00 35.56 3.21
2293 2990 1.835483 CGCAAGCGGGAGATACATGC 61.835 60.000 6.55 0.00 35.56 4.06
2294 2991 0.815213 GCAAGCGGGAGATACATGCA 60.815 55.000 0.00 0.00 32.80 3.96
2295 2992 0.940126 CAAGCGGGAGATACATGCAC 59.060 55.000 0.00 0.00 0.00 4.57
2296 2993 0.179045 AAGCGGGAGATACATGCACC 60.179 55.000 0.00 0.00 0.00 5.01
2297 2994 1.956170 GCGGGAGATACATGCACCG 60.956 63.158 3.93 3.93 43.81 4.94
2298 2995 1.300931 CGGGAGATACATGCACCGG 60.301 63.158 0.00 0.00 37.80 5.28
2299 2996 1.071471 GGGAGATACATGCACCGGG 59.929 63.158 6.32 0.00 0.00 5.73
2300 2997 1.598130 GGAGATACATGCACCGGGC 60.598 63.158 6.32 7.25 45.13 6.13
2301 2998 1.447643 GAGATACATGCACCGGGCT 59.552 57.895 6.32 0.00 45.15 5.19
2302 2999 0.882042 GAGATACATGCACCGGGCTG 60.882 60.000 6.32 9.21 45.15 4.85
2303 3000 2.516930 ATACATGCACCGGGCTGC 60.517 61.111 6.32 8.50 45.15 5.25
2304 3001 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2310 3007 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
2454 3151 5.778241 TCCTGTGAGTCCTGTCTTATGTTTA 59.222 40.000 0.00 0.00 0.00 2.01
2635 3332 0.980423 AGAGTTCTCTGCCCTGGTTC 59.020 55.000 1.23 0.00 0.00 3.62
2665 3362 4.394920 CACGGCTAAACATGTGGAACTAAT 59.605 41.667 0.00 0.00 38.04 1.73
3042 3763 1.411977 AGTTGAGAGATCCATCGCTGG 59.588 52.381 0.00 0.00 44.64 4.85
3043 3764 0.755079 TTGAGAGATCCATCGCTGGG 59.245 55.000 5.28 0.00 43.34 4.45
3044 3765 0.106015 TGAGAGATCCATCGCTGGGA 60.106 55.000 5.28 0.00 43.34 4.37
3212 3939 1.366319 AGTGGCCCATCTCTCAGTTT 58.634 50.000 0.00 0.00 0.00 2.66
3290 4028 1.450531 GCTGTGCACTTGTGCTCCTT 61.451 55.000 23.53 0.00 35.49 3.36
3320 4058 1.071605 CTGCTGCTTAACTCACGTCC 58.928 55.000 0.00 0.00 0.00 4.79
3373 4118 2.282290 GTCTAGACTAGTCACGACGAGC 59.718 54.545 24.44 5.14 37.53 5.03
3420 4165 2.092055 TCATCGACTCGAAAACATTGCG 59.908 45.455 5.00 0.00 39.99 4.85
3660 4405 1.065782 TGGAAAGCGCTTGTATAGGCA 60.066 47.619 25.80 0.00 0.00 4.75
3685 4430 8.979574 CACTTAGAGAACAAAGTAAATCTCGTT 58.020 33.333 0.00 0.00 42.41 3.85
3728 4473 2.440409 CCTCTTGTTACAATGGCAGCT 58.560 47.619 0.00 0.00 0.00 4.24
3871 4617 1.143838 CCCAACTGCCGATCGATCA 59.856 57.895 24.40 12.91 0.00 2.92
3951 4697 4.318332 CTTCACTGGATGCTAGTTGTTGA 58.682 43.478 0.00 0.00 0.00 3.18
3955 4701 2.744202 CTGGATGCTAGTTGTTGACACC 59.256 50.000 0.00 0.00 0.00 4.16
3974 4720 3.875727 CACCTGTCAATCTGCTGGATTAG 59.124 47.826 5.45 1.62 42.20 1.73
4003 4753 5.062183 CCATACTTGACGGCATGAATATACG 59.938 44.000 11.72 0.00 0.00 3.06
4014 4764 5.492854 GCATGAATATACGTGAATATGCCG 58.507 41.667 0.00 0.00 35.03 5.69
4120 4870 4.262678 GGAACCTCTCTAAAGTTGCTCTGT 60.263 45.833 0.00 0.00 0.00 3.41
4164 4914 5.808366 AACTGTCAACTGGTGATTCTCTA 57.192 39.130 0.00 0.00 38.90 2.43
4348 5118 2.501723 GGATGCTTGTTCTCCTGTAGGA 59.498 50.000 0.00 0.00 43.08 2.94
4384 5154 1.137872 AGAGCCTTTGAGTAGGATGCG 59.862 52.381 0.00 0.00 37.50 4.73
4401 5171 3.391382 GGCTAGTCTGCACCCGGT 61.391 66.667 0.00 0.00 34.04 5.28
4418 5883 3.364565 CCCGGTTGTGAACAGTAAATTCG 60.365 47.826 0.00 0.00 0.00 3.34
4641 6124 1.063616 CGTGAGCATCTTCAATGCCAG 59.936 52.381 6.40 0.00 45.59 4.85
4828 6350 6.758254 ACCATTTATGTTAATTATGGCTGGC 58.242 36.000 0.00 0.00 39.46 4.85
4829 6351 6.326064 ACCATTTATGTTAATTATGGCTGGCA 59.674 34.615 6.31 6.31 39.46 4.92
4830 6352 7.147585 ACCATTTATGTTAATTATGGCTGGCAA 60.148 33.333 8.35 0.00 39.46 4.52
4831 6353 7.171337 CCATTTATGTTAATTATGGCTGGCAAC 59.829 37.037 8.35 0.93 30.37 4.17
4832 6354 7.416964 TTTATGTTAATTATGGCTGGCAACT 57.583 32.000 8.35 0.00 37.61 3.16
4833 6355 4.981806 TGTTAATTATGGCTGGCAACTC 57.018 40.909 8.35 0.00 37.61 3.01
4834 6356 4.339748 TGTTAATTATGGCTGGCAACTCA 58.660 39.130 8.35 0.00 37.61 3.41
4839 6361 1.251251 ATGGCTGGCAACTCAGTTTC 58.749 50.000 8.35 0.00 37.12 2.78
4852 6374 5.007385 ACTCAGTTTCGTTACTGTTCTGT 57.993 39.130 15.64 9.95 44.62 3.41
4874 6513 6.986250 TGTATCCATCTCTTGTACATGCTAG 58.014 40.000 0.00 0.00 0.00 3.42
4881 6520 6.280855 TCTCTTGTACATGCTAGCAAACTA 57.719 37.500 23.54 15.20 0.00 2.24
4967 6608 5.868043 CATATGTTGCTGACTTGTTCTCA 57.132 39.130 0.00 0.00 0.00 3.27
5134 6775 4.203226 TGTATCTCTGATCTCTGAACGCT 58.797 43.478 0.00 0.00 0.00 5.07
5197 6841 5.358160 GGGAGCCTGAATATATATTGTTGGC 59.642 44.000 22.59 22.59 34.74 4.52
5321 6965 8.988064 TTTGTAGAATTTTACAAACTGTGCAA 57.012 26.923 23.33 6.05 44.35 4.08
5334 6978 3.545703 ACTGTGCAACTTAGTGAAGCTT 58.454 40.909 0.00 0.00 38.04 3.74
5382 7027 2.951642 ACTGGAATAAATGATGGGCACG 59.048 45.455 0.00 0.00 0.00 5.34
5482 7137 6.465948 AGCAATGAATACTTTCCAAATGCAA 58.534 32.000 0.00 0.00 0.00 4.08
5496 7151 6.480763 TCCAAATGCAATGAGTAGTAAAGGA 58.519 36.000 4.54 0.00 0.00 3.36
5922 7659 2.177594 CTTTCCAGGGAGCAGCGACT 62.178 60.000 0.00 0.00 0.00 4.18
6024 7770 9.168451 TGTATAATATTTTGTGGACGTGTTCAT 57.832 29.630 0.00 0.00 0.00 2.57
6060 7807 7.044798 TGTGCTAACCTTGCAAGTAAATTTTT 58.955 30.769 24.35 8.43 42.41 1.94
6096 7843 5.850557 TGGAGTCAATGTGTGTGATTTTT 57.149 34.783 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.884280 ACCTTTCTACAAGATTTCAACCAG 57.116 37.500 0.00 0.00 0.00 4.00
41 43 7.700322 AGACTATGTATGTAGATTGTTTGCG 57.300 36.000 0.00 0.00 0.00 4.85
51 53 7.148154 GGCCATCAGACTAGACTATGTATGTAG 60.148 44.444 0.00 0.00 0.00 2.74
55 60 5.714333 CAGGCCATCAGACTAGACTATGTAT 59.286 44.000 5.01 0.00 0.00 2.29
76 81 5.724328 TCTCTCTAAACATAACAGTGCAGG 58.276 41.667 0.00 0.00 0.00 4.85
99 104 0.686441 TGCTAGTACCTCGGGCACAT 60.686 55.000 0.00 0.00 0.00 3.21
103 108 1.097547 TACGTGCTAGTACCTCGGGC 61.098 60.000 5.30 0.00 0.00 6.13
145 150 4.184629 AGTAAGCTTTGCAAGAGGTATCG 58.815 43.478 3.20 0.00 0.00 2.92
152 157 1.423541 TGGGGAGTAAGCTTTGCAAGA 59.576 47.619 3.20 0.00 0.00 3.02
155 160 0.251165 GGTGGGGAGTAAGCTTTGCA 60.251 55.000 3.20 0.00 0.00 4.08
186 192 4.455533 ACGCACATGAGTATGTCATTTGTT 59.544 37.500 0.00 0.00 44.05 2.83
201 207 3.388134 CGGCTAGTGACGCACATG 58.612 61.111 11.58 0.00 38.14 3.21
208 214 1.070134 TCCCATATTGCGGCTAGTGAC 59.930 52.381 0.00 0.00 0.00 3.67
209 215 1.344438 CTCCCATATTGCGGCTAGTGA 59.656 52.381 0.00 0.00 0.00 3.41
211 217 1.424638 ACTCCCATATTGCGGCTAGT 58.575 50.000 0.00 0.00 0.00 2.57
212 218 2.550830 AACTCCCATATTGCGGCTAG 57.449 50.000 0.00 0.00 0.00 3.42
213 219 2.486548 GGAAACTCCCATATTGCGGCTA 60.487 50.000 0.00 0.00 0.00 3.93
214 220 1.680338 GAAACTCCCATATTGCGGCT 58.320 50.000 0.00 0.00 0.00 5.52
215 221 0.668535 GGAAACTCCCATATTGCGGC 59.331 55.000 0.00 0.00 0.00 6.53
233 240 8.361169 TGAAAGGTTAATCTATGGAAAAAGGG 57.639 34.615 0.00 0.00 0.00 3.95
259 266 8.932610 ACACATGGTTCAAGAGATAGAATATCT 58.067 33.333 0.00 0.00 30.91 1.98
260 267 9.553064 AACACATGGTTCAAGAGATAGAATATC 57.447 33.333 0.00 0.00 33.35 1.63
287 294 2.993899 AGTGAAAGCAGTTCGGTATTCG 59.006 45.455 0.00 0.00 39.30 3.34
294 301 3.673746 TCAAACAGTGAAAGCAGTTCG 57.326 42.857 0.00 0.00 39.30 3.95
299 306 5.964758 ACAAGAAATCAAACAGTGAAAGCA 58.035 33.333 0.00 0.00 40.50 3.91
301 308 8.282592 TCGATACAAGAAATCAAACAGTGAAAG 58.717 33.333 0.00 0.00 40.50 2.62
373 380 8.290325 GTGAACTAGATTTTTCCAGTTTTCGAT 58.710 33.333 0.00 0.00 31.57 3.59
374 381 7.281324 TGTGAACTAGATTTTTCCAGTTTTCGA 59.719 33.333 0.00 0.00 31.57 3.71
375 382 7.414436 TGTGAACTAGATTTTTCCAGTTTTCG 58.586 34.615 0.00 0.00 31.57 3.46
445 477 1.257675 GTGAAAAACCACAATGCGTGC 59.742 47.619 0.00 0.00 44.91 5.34
447 479 3.518634 AAGTGAAAAACCACAATGCGT 57.481 38.095 0.00 0.00 39.42 5.24
473 505 1.220749 GGCACGACCTATGCTTCCA 59.779 57.895 0.00 0.00 42.93 3.53
557 590 5.506317 CCATGAGAAACACAGTTGTTCTTCC 60.506 44.000 0.00 0.00 45.69 3.46
559 592 5.192927 TCCATGAGAAACACAGTTGTTCTT 58.807 37.500 0.00 0.00 45.69 2.52
564 597 5.756195 TTCTTCCATGAGAAACACAGTTG 57.244 39.130 0.00 0.00 32.95 3.16
572 605 4.797471 CGCACATTTTCTTCCATGAGAAA 58.203 39.130 5.67 5.67 42.28 2.52
579 612 2.360483 TGAAAGCGCACATTTTCTTCCA 59.640 40.909 11.47 0.00 35.02 3.53
593 626 2.993899 AGATTTACTCCGTGTGAAAGCG 59.006 45.455 0.00 0.00 0.00 4.68
616 649 2.743928 GTGCTCCCACCAGAAGCG 60.744 66.667 0.00 0.00 35.92 4.68
644 677 0.401738 CTCCTGGTTCTGCAAGGGAA 59.598 55.000 1.57 0.00 38.90 3.97
645 678 0.473694 TCTCCTGGTTCTGCAAGGGA 60.474 55.000 1.57 0.00 38.90 4.20
646 679 0.401738 TTCTCCTGGTTCTGCAAGGG 59.598 55.000 1.57 0.00 38.90 3.95
647 680 1.202806 TGTTCTCCTGGTTCTGCAAGG 60.203 52.381 0.00 0.00 39.80 3.61
648 681 1.876156 GTGTTCTCCTGGTTCTGCAAG 59.124 52.381 0.00 0.00 0.00 4.01
649 682 1.476833 GGTGTTCTCCTGGTTCTGCAA 60.477 52.381 0.00 0.00 0.00 4.08
650 683 0.108585 GGTGTTCTCCTGGTTCTGCA 59.891 55.000 0.00 0.00 0.00 4.41
651 684 0.951040 CGGTGTTCTCCTGGTTCTGC 60.951 60.000 0.00 0.00 0.00 4.26
652 685 0.679505 TCGGTGTTCTCCTGGTTCTG 59.320 55.000 0.00 0.00 0.00 3.02
654 687 2.249844 TTTCGGTGTTCTCCTGGTTC 57.750 50.000 0.00 0.00 0.00 3.62
655 688 2.721425 TTTTCGGTGTTCTCCTGGTT 57.279 45.000 0.00 0.00 0.00 3.67
657 690 2.808543 CTCTTTTTCGGTGTTCTCCTGG 59.191 50.000 0.00 0.00 0.00 4.45
658 691 2.808543 CCTCTTTTTCGGTGTTCTCCTG 59.191 50.000 0.00 0.00 0.00 3.86
659 692 2.224548 CCCTCTTTTTCGGTGTTCTCCT 60.225 50.000 0.00 0.00 0.00 3.69
660 693 2.152016 CCCTCTTTTTCGGTGTTCTCC 58.848 52.381 0.00 0.00 0.00 3.71
661 694 3.121738 TCCCTCTTTTTCGGTGTTCTC 57.878 47.619 0.00 0.00 0.00 2.87
662 695 3.211865 GTTCCCTCTTTTTCGGTGTTCT 58.788 45.455 0.00 0.00 0.00 3.01
663 696 2.946990 TGTTCCCTCTTTTTCGGTGTTC 59.053 45.455 0.00 0.00 0.00 3.18
664 697 3.007473 TGTTCCCTCTTTTTCGGTGTT 57.993 42.857 0.00 0.00 0.00 3.32
665 698 2.721425 TGTTCCCTCTTTTTCGGTGT 57.279 45.000 0.00 0.00 0.00 4.16
666 699 2.488153 GGATGTTCCCTCTTTTTCGGTG 59.512 50.000 0.00 0.00 0.00 4.94
668 701 2.790433 TGGATGTTCCCTCTTTTTCGG 58.210 47.619 0.00 0.00 35.03 4.30
669 702 4.265073 AGATGGATGTTCCCTCTTTTTCG 58.735 43.478 0.00 0.00 38.16 3.46
670 703 7.703058 TTTAGATGGATGTTCCCTCTTTTTC 57.297 36.000 6.65 0.00 38.16 2.29
677 734 5.779241 TGAGTTTTAGATGGATGTTCCCT 57.221 39.130 0.00 0.00 35.03 4.20
683 740 8.918658 CATGTGTTTTTGAGTTTTAGATGGATG 58.081 33.333 0.00 0.00 0.00 3.51
733 790 3.826524 TGGCGCCATTCTGGATATTTTA 58.173 40.909 29.03 0.00 40.96 1.52
736 793 2.559668 CAATGGCGCCATTCTGGATATT 59.440 45.455 44.03 24.07 43.92 1.28
744 801 2.544267 GACTACTACAATGGCGCCATTC 59.456 50.000 44.03 29.52 43.92 2.67
757 1088 4.879104 TTCTGCTTCGCTAGACTACTAC 57.121 45.455 0.00 0.00 0.00 2.73
758 1089 5.123936 TCATTCTGCTTCGCTAGACTACTA 58.876 41.667 0.00 0.00 0.00 1.82
759 1090 3.948473 TCATTCTGCTTCGCTAGACTACT 59.052 43.478 0.00 0.00 0.00 2.57
772 1103 1.006281 TCAAGGCCCATTCATTCTGCT 59.994 47.619 0.00 0.00 0.00 4.24
806 1137 4.735132 TACGTGCGTCTGGGCTGC 62.735 66.667 0.00 0.00 0.00 5.25
817 1148 0.460635 TTATTCGGCCCAGTACGTGC 60.461 55.000 0.00 0.00 0.00 5.34
866 1197 4.087892 ATGACTGGCGCCGCTTCT 62.088 61.111 23.90 2.98 0.00 2.85
891 1222 3.726517 CTTTCGTGCCGCACTGGG 61.727 66.667 20.87 6.26 38.63 4.45
892 1223 4.389576 GCTTTCGTGCCGCACTGG 62.390 66.667 20.87 6.99 42.50 4.00
893 1224 4.724697 CGCTTTCGTGCCGCACTG 62.725 66.667 20.87 14.13 31.34 3.66
905 1236 2.934553 GGTTCGCTTCCTTATACGCTTT 59.065 45.455 0.00 0.00 0.00 3.51
1005 1360 2.035155 TCTTCAGAGGACGGCGGA 59.965 61.111 13.24 0.00 0.00 5.54
1132 1506 3.318017 ACGACAACATCTCAGTGTAAGC 58.682 45.455 0.00 0.00 0.00 3.09
1133 1507 4.745125 ACAACGACAACATCTCAGTGTAAG 59.255 41.667 0.00 0.00 0.00 2.34
1134 1508 4.506288 CACAACGACAACATCTCAGTGTAA 59.494 41.667 0.00 0.00 0.00 2.41
1136 1510 2.866156 CACAACGACAACATCTCAGTGT 59.134 45.455 0.00 0.00 0.00 3.55
1137 1511 2.221749 CCACAACGACAACATCTCAGTG 59.778 50.000 0.00 0.00 0.00 3.66
1138 1512 2.483876 CCACAACGACAACATCTCAGT 58.516 47.619 0.00 0.00 0.00 3.41
1139 1513 1.800586 CCCACAACGACAACATCTCAG 59.199 52.381 0.00 0.00 0.00 3.35
1142 1516 0.250727 CCCCCACAACGACAACATCT 60.251 55.000 0.00 0.00 0.00 2.90
1143 1517 2.253513 CCCCCACAACGACAACATC 58.746 57.895 0.00 0.00 0.00 3.06
1144 1518 4.492604 CCCCCACAACGACAACAT 57.507 55.556 0.00 0.00 0.00 2.71
1158 1532 2.813726 GCAACCAAACCCAACCCCC 61.814 63.158 0.00 0.00 0.00 5.40
1165 1550 1.080569 CATCGCTGCAACCAAACCC 60.081 57.895 0.00 0.00 0.00 4.11
1261 1646 2.204464 AAAAGGGGGAGGGGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
1263 1648 2.204401 GGAAAAGGGGGAGGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
1264 1649 3.356212 GGGAAAAGGGGGAGGGGG 61.356 72.222 0.00 0.00 0.00 5.40
1265 1650 2.204464 AGGGAAAAGGGGGAGGGG 60.204 66.667 0.00 0.00 0.00 4.79
1266 1651 2.317378 GGAGGGAAAAGGGGGAGGG 61.317 68.421 0.00 0.00 0.00 4.30
1267 1652 2.317378 GGGAGGGAAAAGGGGGAGG 61.317 68.421 0.00 0.00 0.00 4.30
1270 1655 1.941281 ATGGGGAGGGAAAAGGGGG 60.941 63.158 0.00 0.00 0.00 5.40
1283 1668 1.935931 AACCAAGAGGGGGATGGGG 60.936 63.158 0.00 0.00 42.91 4.96
1295 1680 7.969536 TCTAAGTTGAGAATTCTGAACCAAG 57.030 36.000 27.51 23.96 40.27 3.61
1310 1960 2.631062 TGCTCCTCCGTTTCTAAGTTGA 59.369 45.455 0.00 0.00 0.00 3.18
1311 1961 2.996621 CTGCTCCTCCGTTTCTAAGTTG 59.003 50.000 0.00 0.00 0.00 3.16
1326 1981 2.417933 CACATCAACAAGTAGCTGCTCC 59.582 50.000 4.91 0.00 0.00 4.70
1341 2000 7.170393 AGTAACTAACTAGCATGACACATCA 57.830 36.000 0.00 0.00 36.36 3.07
1345 2004 5.063564 GCCAAGTAACTAACTAGCATGACAC 59.936 44.000 0.00 0.00 37.50 3.67
1348 2007 4.224147 TGGCCAAGTAACTAACTAGCATGA 59.776 41.667 0.61 0.00 38.68 3.07
1390 2056 2.771639 CGAGCTAGTGGGCTACGCA 61.772 63.158 3.96 0.00 43.20 5.24
1413 2079 2.153645 TCCACTGTATTGTGCAGCTTG 58.846 47.619 0.00 0.00 37.47 4.01
1414 2080 2.038952 TCTCCACTGTATTGTGCAGCTT 59.961 45.455 0.00 0.00 37.47 3.74
1442 2109 9.381038 AGGAAATCTATCTAGGCATACACTTTA 57.619 33.333 0.00 0.00 0.00 1.85
1443 2110 8.153550 CAGGAAATCTATCTAGGCATACACTTT 58.846 37.037 0.00 0.00 0.00 2.66
1508 2175 0.744281 TTCTGGCGACGCATCTATGA 59.256 50.000 23.09 6.85 0.00 2.15
1524 2194 0.465097 CCCAGCTCGCCATCAATTCT 60.465 55.000 0.00 0.00 0.00 2.40
1529 2199 0.034186 ATTTTCCCAGCTCGCCATCA 60.034 50.000 0.00 0.00 0.00 3.07
1560 2230 0.178975 AATCTGCCCAACGGAAACCA 60.179 50.000 0.00 0.00 37.17 3.67
1676 2360 2.159827 CGACAAAGAAAGGCGTTAGCTC 60.160 50.000 0.00 0.00 44.37 4.09
1755 2439 0.539986 GGTCGATGTGGAGGCCTTTA 59.460 55.000 6.77 0.00 0.00 1.85
1773 2457 2.755103 GTCTTTTCCAGGCCATACAAGG 59.245 50.000 5.01 0.00 0.00 3.61
1816 2500 2.104792 GCTGGGAATACTGGCATACTGA 59.895 50.000 0.00 0.00 0.00 3.41
1819 2503 2.498167 CAGCTGGGAATACTGGCATAC 58.502 52.381 5.57 0.00 0.00 2.39
1826 2510 1.225704 GCAGCCAGCTGGGAATACT 59.774 57.895 33.46 18.76 43.77 2.12
1877 2562 7.993183 ACTTCAGAGAAGTTCATTAGGAAAACA 59.007 33.333 5.50 0.00 37.23 2.83
1886 2571 4.950050 ACGACACTTCAGAGAAGTTCATT 58.050 39.130 9.53 0.00 0.00 2.57
1889 2574 4.551024 GCAAACGACACTTCAGAGAAGTTC 60.551 45.833 9.53 9.69 0.00 3.01
2061 2757 3.497942 CCACTACCTTAAAACCACCAGCT 60.498 47.826 0.00 0.00 0.00 4.24
2124 2821 1.957877 CGCCAAAGTTCCCCTTTTGTA 59.042 47.619 0.00 0.00 41.51 2.41
2126 2823 0.599991 GCGCCAAAGTTCCCCTTTTG 60.600 55.000 0.00 0.00 41.51 2.44
2127 2824 1.045911 TGCGCCAAAGTTCCCCTTTT 61.046 50.000 4.18 0.00 41.51 2.27
2128 2825 1.456705 TGCGCCAAAGTTCCCCTTT 60.457 52.632 4.18 0.00 44.30 3.11
2129 2826 1.903404 CTGCGCCAAAGTTCCCCTT 60.903 57.895 4.18 0.00 33.79 3.95
2130 2827 2.282462 CTGCGCCAAAGTTCCCCT 60.282 61.111 4.18 0.00 0.00 4.79
2132 2829 2.644992 CACTGCGCCAAAGTTCCC 59.355 61.111 4.18 0.00 0.00 3.97
2133 2830 0.887387 TACCACTGCGCCAAAGTTCC 60.887 55.000 4.18 0.00 0.00 3.62
2136 2833 0.951558 CTTTACCACTGCGCCAAAGT 59.048 50.000 4.18 0.00 0.00 2.66
2137 2834 0.387239 GCTTTACCACTGCGCCAAAG 60.387 55.000 4.18 6.18 0.00 2.77
2138 2835 0.821711 AGCTTTACCACTGCGCCAAA 60.822 50.000 4.18 0.00 0.00 3.28
2139 2836 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2140 2837 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2141 2838 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2145 2842 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2146 2843 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2147 2844 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2148 2845 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2149 2846 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2150 2847 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2151 2848 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2152 2849 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2153 2850 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2154 2851 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2155 2852 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2156 2853 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2157 2854 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2158 2855 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2159 2856 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2160 2857 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2171 2868 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2172 2869 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2173 2870 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2174 2871 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2175 2872 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2176 2873 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2177 2874 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2178 2875 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2179 2876 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2180 2877 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
2181 2878 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2182 2879 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2183 2880 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2184 2881 2.576615 AGCTGTTTCCAGGACTTGAAC 58.423 47.619 0.00 0.00 39.22 3.18
2185 2882 3.117888 AGAAGCTGTTTCCAGGACTTGAA 60.118 43.478 0.32 0.00 39.22 2.69
2186 2883 2.439507 AGAAGCTGTTTCCAGGACTTGA 59.560 45.455 0.32 0.00 39.22 3.02
2187 2884 2.856222 AGAAGCTGTTTCCAGGACTTG 58.144 47.619 0.32 0.00 39.22 3.16
2188 2885 3.584733 AAGAAGCTGTTTCCAGGACTT 57.415 42.857 0.32 0.00 39.22 3.01
2189 2886 3.391296 TGTAAGAAGCTGTTTCCAGGACT 59.609 43.478 0.32 0.00 39.22 3.85
2190 2887 3.740115 TGTAAGAAGCTGTTTCCAGGAC 58.260 45.455 0.32 0.00 39.22 3.85
2191 2888 3.646162 TCTGTAAGAAGCTGTTTCCAGGA 59.354 43.478 0.32 0.00 42.31 3.86
2192 2889 4.008074 TCTGTAAGAAGCTGTTTCCAGG 57.992 45.455 0.32 0.00 42.31 4.45
2205 2902 5.250774 AGCCTTTCCCTACAATTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2206 2903 5.355350 CAGCCTTTCCCTACAATTCTGTAAG 59.645 44.000 0.00 0.00 37.58 2.34
2207 2904 5.253330 CAGCCTTTCCCTACAATTCTGTAA 58.747 41.667 0.00 0.00 37.58 2.41
2208 2905 4.843728 CAGCCTTTCCCTACAATTCTGTA 58.156 43.478 0.00 0.00 36.96 2.74
2209 2906 3.690460 CAGCCTTTCCCTACAATTCTGT 58.310 45.455 0.00 0.00 39.75 3.41
2210 2907 2.424956 GCAGCCTTTCCCTACAATTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2211 2908 2.728007 GCAGCCTTTCCCTACAATTCT 58.272 47.619 0.00 0.00 0.00 2.40
2212 2909 1.401905 CGCAGCCTTTCCCTACAATTC 59.598 52.381 0.00 0.00 0.00 2.17
2213 2910 1.271926 ACGCAGCCTTTCCCTACAATT 60.272 47.619 0.00 0.00 0.00 2.32
2214 2911 0.328258 ACGCAGCCTTTCCCTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2215 2912 0.978151 TACGCAGCCTTTCCCTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2216 2913 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2217 2914 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2218 2915 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2219 2916 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2220 2917 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2221 2918 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2222 2919 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2223 2920 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2224 2921 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2225 2922 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2226 2923 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2227 2924 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2228 2925 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2229 2926 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2230 2927 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2231 2928 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2241 2938 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2242 2939 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2243 2940 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2244 2941 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2245 2942 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2246 2943 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2247 2944 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2248 2945 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2255 2952 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2270 2967 3.445518 TATCTCCCGCTTGCGCAGG 62.446 63.158 16.21 16.21 34.90 4.85
2271 2968 2.106938 TATCTCCCGCTTGCGCAG 59.893 61.111 11.31 6.32 35.30 5.18
2272 2969 2.202878 GTATCTCCCGCTTGCGCA 60.203 61.111 5.66 5.66 35.30 6.09
2273 2970 1.595382 ATGTATCTCCCGCTTGCGC 60.595 57.895 9.71 0.00 0.00 6.09
2274 2971 1.835483 GCATGTATCTCCCGCTTGCG 61.835 60.000 8.14 8.14 0.00 4.85
2275 2972 0.815213 TGCATGTATCTCCCGCTTGC 60.815 55.000 0.00 0.00 34.98 4.01
2276 2973 0.940126 GTGCATGTATCTCCCGCTTG 59.060 55.000 0.00 0.00 0.00 4.01
2277 2974 0.179045 GGTGCATGTATCTCCCGCTT 60.179 55.000 0.00 0.00 0.00 4.68
2278 2975 1.447643 GGTGCATGTATCTCCCGCT 59.552 57.895 0.00 0.00 0.00 5.52
2279 2976 1.956170 CGGTGCATGTATCTCCCGC 60.956 63.158 0.00 0.00 0.00 6.13
2280 2977 1.300931 CCGGTGCATGTATCTCCCG 60.301 63.158 3.96 3.96 35.32 5.14
2281 2978 1.071471 CCCGGTGCATGTATCTCCC 59.929 63.158 0.00 0.00 0.00 4.30
2282 2979 1.598130 GCCCGGTGCATGTATCTCC 60.598 63.158 9.72 0.00 40.77 3.71
2283 2980 0.882042 CAGCCCGGTGCATGTATCTC 60.882 60.000 15.92 0.00 44.83 2.75
2284 2981 1.146930 CAGCCCGGTGCATGTATCT 59.853 57.895 15.92 0.00 44.83 1.98
2285 2982 2.546494 GCAGCCCGGTGCATGTATC 61.546 63.158 13.70 0.00 43.41 2.24
2286 2983 2.516930 GCAGCCCGGTGCATGTAT 60.517 61.111 13.70 0.00 43.41 2.29
2287 2984 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2309 3006 9.049523 TCAGCAAAATTGTAATATGCACAAAAA 57.950 25.926 14.02 0.00 39.22 1.94
2310 3007 8.599055 TCAGCAAAATTGTAATATGCACAAAA 57.401 26.923 14.02 0.00 39.22 2.44
2311 3008 8.774890 ATCAGCAAAATTGTAATATGCACAAA 57.225 26.923 14.02 0.00 39.22 2.83
2312 3009 8.252417 AGATCAGCAAAATTGTAATATGCACAA 58.748 29.630 14.02 5.80 40.01 3.33
2313 3010 7.774134 AGATCAGCAAAATTGTAATATGCACA 58.226 30.769 14.02 0.00 39.42 4.57
2314 3011 8.638685 AAGATCAGCAAAATTGTAATATGCAC 57.361 30.769 14.02 6.18 39.42 4.57
2315 3012 8.689061 AGAAGATCAGCAAAATTGTAATATGCA 58.311 29.630 14.02 0.00 39.42 3.96
2316 3013 8.965172 CAGAAGATCAGCAAAATTGTAATATGC 58.035 33.333 0.00 7.02 37.28 3.14
2319 3016 9.453572 AGACAGAAGATCAGCAAAATTGTAATA 57.546 29.630 0.00 0.00 0.00 0.98
2320 3017 8.345724 AGACAGAAGATCAGCAAAATTGTAAT 57.654 30.769 0.00 0.00 0.00 1.89
2321 3018 7.750229 AGACAGAAGATCAGCAAAATTGTAA 57.250 32.000 0.00 0.00 0.00 2.41
2635 3332 4.212004 CCACATGTTTAGCCGTGATGATAG 59.788 45.833 0.00 0.00 0.00 2.08
2665 3362 2.256174 CGACTCGAAATCCGTAAGCAA 58.744 47.619 0.00 0.00 39.75 3.91
3042 3763 1.079438 AGTCCACCACTCCTCCTCC 59.921 63.158 0.00 0.00 0.00 4.30
3043 3764 1.261238 CCAGTCCACCACTCCTCCTC 61.261 65.000 0.00 0.00 30.26 3.71
3044 3765 1.229336 CCAGTCCACCACTCCTCCT 60.229 63.158 0.00 0.00 30.26 3.69
3106 3833 0.911525 ACCATCCACACTCCCTCCTG 60.912 60.000 0.00 0.00 0.00 3.86
3212 3939 2.034066 GCAGCAGTAACCAGGGCA 59.966 61.111 0.00 0.00 0.00 5.36
3290 4028 4.025858 GCAGCAGGCAGTCAGGGA 62.026 66.667 0.00 0.00 43.97 4.20
3320 4058 2.178273 TCGACATGGCGACGAGTG 59.822 61.111 22.34 0.00 36.88 3.51
3396 4141 4.377431 GCAATGTTTTCGAGTCGATGAGTT 60.377 41.667 17.34 5.57 35.23 3.01
3420 4165 7.420800 CCATAAAGAGATATCAAACCACAAGC 58.579 38.462 5.32 0.00 0.00 4.01
3616 4361 4.843728 TGAAGATGCCCTAACTTACCTTG 58.156 43.478 0.00 0.00 0.00 3.61
3660 4405 8.979574 CAACGAGATTTACTTTGTTCTCTAAGT 58.020 33.333 0.00 0.00 41.08 2.24
3685 4430 5.109903 GCGCTAAGTTCCTTCTCTAATTCA 58.890 41.667 0.00 0.00 0.00 2.57
3728 4473 5.171476 GCTTATTAGCATCCGAGATTAGCA 58.829 41.667 0.00 0.00 46.95 3.49
3765 4510 1.793581 CGCACAAGATAAAGCGGCA 59.206 52.632 1.45 0.00 45.83 5.69
3871 4617 1.678970 GCGCCAGGATTTGTTCCCT 60.679 57.895 0.00 0.00 46.81 4.20
3901 4647 2.045926 GCATCTCCAACGCTGGGT 60.046 61.111 4.74 0.00 43.71 4.51
3951 4697 1.059098 TCCAGCAGATTGACAGGTGT 58.941 50.000 0.00 0.00 32.88 4.16
3955 4701 4.334759 CCAACTAATCCAGCAGATTGACAG 59.665 45.833 11.18 4.80 45.11 3.51
4003 4753 2.919666 AAACAGCACGGCATATTCAC 57.080 45.000 0.00 0.00 0.00 3.18
4120 4870 2.512056 TCCCAACCTGAAACAGAGGAAA 59.488 45.455 0.00 0.00 34.37 3.13
4262 5012 2.475487 GTGAACAAACTCGGACTGTAGC 59.525 50.000 0.00 0.00 0.00 3.58
4263 5013 3.057734 GGTGAACAAACTCGGACTGTAG 58.942 50.000 0.00 0.00 0.00 2.74
4264 5014 2.224113 GGGTGAACAAACTCGGACTGTA 60.224 50.000 0.00 0.00 0.00 2.74
4265 5015 1.474498 GGGTGAACAAACTCGGACTGT 60.474 52.381 0.00 0.00 0.00 3.55
4266 5016 1.202651 AGGGTGAACAAACTCGGACTG 60.203 52.381 0.00 0.00 0.00 3.51
4268 5018 2.036862 AGTAGGGTGAACAAACTCGGAC 59.963 50.000 0.00 0.00 0.00 4.79
4269 5019 2.036733 CAGTAGGGTGAACAAACTCGGA 59.963 50.000 0.00 0.00 0.00 4.55
4270 5020 2.413837 CAGTAGGGTGAACAAACTCGG 58.586 52.381 0.00 0.00 0.00 4.63
4271 5021 1.798813 GCAGTAGGGTGAACAAACTCG 59.201 52.381 0.00 0.00 0.00 4.18
4319 5089 4.018597 AGGAGAACAAGCATCCTCTCAAAT 60.019 41.667 7.81 0.00 39.27 2.32
4329 5099 3.307762 GGTTCCTACAGGAGAACAAGCAT 60.308 47.826 5.37 0.00 46.36 3.79
4384 5154 2.955881 AACCGGGTGCAGACTAGCC 61.956 63.158 6.32 0.00 0.00 3.93
4569 6051 4.141505 TGTTTGGACATCTGAGGAGTTTGA 60.142 41.667 0.00 0.00 0.00 2.69
4686 6184 0.905337 GCCCGGGCTCATCTATACCT 60.905 60.000 38.76 0.00 38.26 3.08
4818 6340 2.584835 AACTGAGTTGCCAGCCATAA 57.415 45.000 0.00 0.00 37.68 1.90
4819 6341 2.436417 GAAACTGAGTTGCCAGCCATA 58.564 47.619 0.00 0.00 37.68 2.74
4820 6342 1.251251 GAAACTGAGTTGCCAGCCAT 58.749 50.000 0.00 0.00 37.68 4.40
4821 6343 1.165907 CGAAACTGAGTTGCCAGCCA 61.166 55.000 0.00 0.00 37.68 4.75
4822 6344 1.166531 ACGAAACTGAGTTGCCAGCC 61.167 55.000 0.00 0.00 37.68 4.85
4823 6345 0.663153 AACGAAACTGAGTTGCCAGC 59.337 50.000 0.00 0.00 37.68 4.85
4824 6346 3.131396 AGTAACGAAACTGAGTTGCCAG 58.869 45.455 0.00 0.00 39.93 4.85
4825 6347 3.188159 AGTAACGAAACTGAGTTGCCA 57.812 42.857 0.00 0.00 34.28 4.92
4831 6353 7.999500 TGGATACAGAACAGTAACGAAACTGAG 60.999 40.741 22.56 13.70 45.94 3.35
4832 6354 6.239092 TGGATACAGAACAGTAACGAAACTGA 60.239 38.462 22.56 5.44 45.94 3.41
4834 6356 6.092955 TGGATACAGAACAGTAACGAAACT 57.907 37.500 0.00 0.00 46.17 2.66
4852 6374 5.539955 TGCTAGCATGTACAAGAGATGGATA 59.460 40.000 14.93 0.00 29.33 2.59
4967 6608 2.851263 TGACAAAGATAGCGGGTGTT 57.149 45.000 0.00 0.00 0.00 3.32
5134 6775 1.672030 CAGCATGGCGGAGTGTTCA 60.672 57.895 0.00 0.00 0.00 3.18
5321 6965 6.599638 CCTTATTAAGCCAAGCTTCACTAAGT 59.400 38.462 4.87 0.00 46.77 2.24
5334 6978 5.822204 ACAATACACCACCTTATTAAGCCA 58.178 37.500 0.00 0.00 0.00 4.75
5496 7151 2.298163 CAGCTGCTCCCAAAAATGAGTT 59.702 45.455 0.00 0.00 0.00 3.01
5665 7334 3.427863 GGGAGTACAAAAGAACGAAGACG 59.572 47.826 0.00 0.00 45.75 4.18
5666 7335 4.629092 AGGGAGTACAAAAGAACGAAGAC 58.371 43.478 0.00 0.00 0.00 3.01
5671 7340 7.011669 TGTTTAAAGAGGGAGTACAAAAGAACG 59.988 37.037 0.00 0.00 0.00 3.95
5897 7634 2.157738 CTGCTCCCTGGAAAGTCAAAG 58.842 52.381 0.00 0.00 0.00 2.77
5922 7659 6.239430 GGATTTCAGATACTATCAGAGGTGCA 60.239 42.308 0.00 0.00 0.00 4.57
6024 7770 5.123820 GCAAGGTTAGCACAATGTAAGATCA 59.876 40.000 0.00 0.00 0.00 2.92
6060 7807 5.860941 TTGACTCCAAGTAATTGCCAAAA 57.139 34.783 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.