Multiple sequence alignment - TraesCS7D01G028100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G028100 chr7D 100.000 3968 0 0 1 3968 13678356 13674389 0.000000e+00 7328.0
1 TraesCS7D01G028100 chr7D 89.004 482 51 1 1032 1513 34996516 34996037 2.640000e-166 595.0
2 TraesCS7D01G028100 chr7D 91.026 78 6 1 788 864 160489946 160490023 1.950000e-18 104.0
3 TraesCS7D01G028100 chr7A 86.425 1989 171 39 1951 3882 13178334 13176388 0.000000e+00 2085.0
4 TraesCS7D01G028100 chr7A 89.934 1212 73 18 723 1902 13179607 13178413 0.000000e+00 1517.0
5 TraesCS7D01G028100 chr7A 86.684 383 43 2 1025 1399 465342643 465343025 6.130000e-113 418.0
6 TraesCS7D01G028100 chr7A 80.962 499 49 19 97 587 13182195 13181735 1.750000e-93 353.0
7 TraesCS7D01G028100 chr7A 96.296 189 6 1 3781 3968 13154551 13154363 3.850000e-80 309.0
8 TraesCS7D01G028100 chr7A 91.111 225 10 2 3545 3760 13154764 13154541 3.000000e-76 296.0
9 TraesCS7D01G028100 chr7A 98.611 144 2 0 3407 3550 13163605 13163462 5.090000e-64 255.0
10 TraesCS7D01G028100 chr7A 92.308 78 5 1 788 864 161297396 161297473 4.190000e-20 110.0
11 TraesCS7D01G028100 chr5A 88.830 376 34 2 1032 1399 425274699 425274324 4.670000e-124 455.0
12 TraesCS7D01G028100 chr5B 83.505 485 57 6 1029 1513 643476145 643476606 7.880000e-117 431.0
13 TraesCS7D01G028100 chr6D 92.233 206 16 0 1032 1237 324511235 324511030 3.880000e-75 292.0
14 TraesCS7D01G028100 chr7B 90.291 206 20 0 1032 1237 317847232 317847027 1.820000e-68 270.0
15 TraesCS7D01G028100 chr6B 90.291 206 20 0 1032 1237 703840986 703840781 1.820000e-68 270.0
16 TraesCS7D01G028100 chr6B 90.909 77 5 2 788 863 703146751 703146676 7.020000e-18 102.0
17 TraesCS7D01G028100 chr3D 90.291 206 20 0 1032 1237 178168102 178167897 1.820000e-68 270.0
18 TraesCS7D01G028100 chr4A 80.364 275 41 10 455 717 134057450 134057177 3.130000e-46 196.0
19 TraesCS7D01G028100 chr1D 78.277 267 46 9 1974 2237 80446040 80446297 1.140000e-35 161.0
20 TraesCS7D01G028100 chr1D 93.651 63 3 1 803 864 458827176 458827238 4.220000e-15 93.5
21 TraesCS7D01G028100 chr1B 78.277 267 46 9 1974 2237 132935948 132936205 1.140000e-35 161.0
22 TraesCS7D01G028100 chr4B 78.292 281 38 15 452 716 47645233 47644960 4.100000e-35 159.0
23 TraesCS7D01G028100 chr4B 92.105 76 4 2 790 864 47644924 47644850 5.420000e-19 106.0
24 TraesCS7D01G028100 chr2B 78.947 190 25 11 429 606 128378493 128378307 9.010000e-22 115.0
25 TraesCS7D01G028100 chr2B 91.026 78 6 1 788 864 775134278 775134355 1.950000e-18 104.0
26 TraesCS7D01G028100 chr2D 91.026 78 6 1 788 864 16143651 16143728 1.950000e-18 104.0
27 TraesCS7D01G028100 chr3B 91.781 73 5 1 788 859 63434693 63434621 2.520000e-17 100.0
28 TraesCS7D01G028100 chr3B 78.363 171 21 12 455 615 18471985 18471821 3.260000e-16 97.1
29 TraesCS7D01G028100 chr3B 80.469 128 16 5 455 573 18436647 18436520 5.460000e-14 89.8
30 TraesCS7D01G028100 chrUn 100.000 36 0 0 3447 3482 383675327 383675292 2.560000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G028100 chr7D 13674389 13678356 3967 True 7328.000000 7328 100.000000 1 3968 1 chr7D.!!$R1 3967
1 TraesCS7D01G028100 chr7A 13176388 13182195 5807 True 1318.333333 2085 85.773667 97 3882 3 chr7A.!!$R3 3785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.027324 CGTACTTCGTACCTCCTCGC 59.973 60.0 0.00 0.00 35.81 5.03 F
970 2986 0.034960 TTTTAGCTGCCGCCACCATA 60.035 50.0 0.00 0.00 36.60 2.74 F
1968 4039 0.032678 ACCAGCTGAACTCTGTCACG 59.967 55.0 17.39 0.00 0.00 4.35 F
2097 4168 0.179150 AGTCTGCGATTGAGCGTCTC 60.179 55.0 0.00 0.58 40.67 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 3989 0.032678 CGTGACAGAGTTCAGCTGGT 59.967 55.0 15.13 1.75 37.69 4.00 R
2103 4174 0.246757 CGAAAGGCGTCGATGAAACG 60.247 55.0 9.31 0.00 43.86 3.60 R
2904 5001 0.247460 CTCTGATGTTGTCGAGGCCA 59.753 55.0 5.01 0.00 0.00 5.36 R
3594 5702 0.249868 CGTGACACAAGGGCTTCTGA 60.250 55.0 6.37 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.161866 AGTTGAGGTCTCTTCTGTCTCC 58.838 50.000 0.00 0.00 0.00 3.71
22 23 1.827681 TGAGGTCTCTTCTGTCTCCG 58.172 55.000 0.00 0.00 0.00 4.63
23 24 1.074084 TGAGGTCTCTTCTGTCTCCGT 59.926 52.381 0.00 0.00 0.00 4.69
24 25 1.470890 GAGGTCTCTTCTGTCTCCGTG 59.529 57.143 0.00 0.00 0.00 4.94
25 26 0.109039 GGTCTCTTCTGTCTCCGTGC 60.109 60.000 0.00 0.00 0.00 5.34
26 27 0.455295 GTCTCTTCTGTCTCCGTGCG 60.455 60.000 0.00 0.00 0.00 5.34
27 28 1.803519 CTCTTCTGTCTCCGTGCGC 60.804 63.158 0.00 0.00 0.00 6.09
28 29 3.175240 CTTCTGTCTCCGTGCGCG 61.175 66.667 13.88 13.88 37.95 6.86
38 39 4.759893 CGTGCGCGCGAGACAAAG 62.760 66.667 37.95 15.26 0.00 2.77
39 40 3.702555 GTGCGCGCGAGACAAAGT 61.703 61.111 37.18 0.00 0.00 2.66
40 41 3.701530 TGCGCGCGAGACAAAGTG 61.702 61.111 37.18 0.00 0.00 3.16
41 42 3.403057 GCGCGCGAGACAAAGTGA 61.403 61.111 37.18 0.00 0.00 3.41
42 43 2.730672 GCGCGCGAGACAAAGTGAT 61.731 57.895 37.18 0.00 0.00 3.06
43 44 1.057822 CGCGCGAGACAAAGTGATG 59.942 57.895 28.94 0.00 0.00 3.07
44 45 1.225854 GCGCGAGACAAAGTGATGC 60.226 57.895 12.10 0.00 0.00 3.91
45 46 1.421485 CGCGAGACAAAGTGATGCC 59.579 57.895 0.00 0.00 0.00 4.40
46 47 1.421485 GCGAGACAAAGTGATGCCG 59.579 57.895 0.00 0.00 0.00 5.69
47 48 1.970917 GCGAGACAAAGTGATGCCGG 61.971 60.000 0.00 0.00 0.00 6.13
48 49 1.796796 GAGACAAAGTGATGCCGGC 59.203 57.895 22.73 22.73 0.00 6.13
49 50 0.955428 GAGACAAAGTGATGCCGGCA 60.955 55.000 34.80 34.80 0.00 5.69
50 51 0.957395 AGACAAAGTGATGCCGGCAG 60.957 55.000 35.36 21.15 0.00 4.85
51 52 0.955428 GACAAAGTGATGCCGGCAGA 60.955 55.000 35.36 21.11 0.00 4.26
52 53 0.537143 ACAAAGTGATGCCGGCAGAA 60.537 50.000 35.36 22.34 0.00 3.02
53 54 0.813184 CAAAGTGATGCCGGCAGAAT 59.187 50.000 35.36 19.23 0.00 2.40
54 55 2.016318 CAAAGTGATGCCGGCAGAATA 58.984 47.619 35.36 17.40 0.00 1.75
55 56 1.959042 AAGTGATGCCGGCAGAATAG 58.041 50.000 35.36 0.00 0.00 1.73
56 57 0.107456 AGTGATGCCGGCAGAATAGG 59.893 55.000 35.36 0.00 0.00 2.57
57 58 0.106708 GTGATGCCGGCAGAATAGGA 59.893 55.000 35.36 8.54 0.00 2.94
58 59 0.394192 TGATGCCGGCAGAATAGGAG 59.606 55.000 35.36 0.00 0.00 3.69
59 60 0.952984 GATGCCGGCAGAATAGGAGC 60.953 60.000 35.36 7.00 0.00 4.70
60 61 1.699054 ATGCCGGCAGAATAGGAGCA 61.699 55.000 35.36 6.16 0.00 4.26
61 62 1.889573 GCCGGCAGAATAGGAGCAC 60.890 63.158 24.80 0.00 0.00 4.40
62 63 1.826024 CCGGCAGAATAGGAGCACT 59.174 57.895 0.00 0.00 0.00 4.40
63 64 0.179000 CCGGCAGAATAGGAGCACTT 59.821 55.000 0.00 0.00 0.00 3.16
64 65 1.293924 CGGCAGAATAGGAGCACTTG 58.706 55.000 0.00 0.00 0.00 3.16
65 66 1.673168 GGCAGAATAGGAGCACTTGG 58.327 55.000 0.00 0.00 0.00 3.61
66 67 1.020437 GCAGAATAGGAGCACTTGGC 58.980 55.000 0.00 0.00 45.30 4.52
75 76 3.447040 GCACTTGGCTTGGCTCAA 58.553 55.556 0.00 0.00 40.25 3.02
76 77 1.741525 GCACTTGGCTTGGCTCAAA 59.258 52.632 0.00 0.00 40.25 2.69
77 78 0.104671 GCACTTGGCTTGGCTCAAAA 59.895 50.000 0.00 0.00 40.25 2.44
78 79 1.270465 GCACTTGGCTTGGCTCAAAAT 60.270 47.619 0.00 0.00 40.25 1.82
79 80 2.807837 GCACTTGGCTTGGCTCAAAATT 60.808 45.455 0.00 0.00 40.25 1.82
80 81 2.803956 CACTTGGCTTGGCTCAAAATTG 59.196 45.455 0.00 0.00 0.00 2.32
81 82 2.224354 ACTTGGCTTGGCTCAAAATTGG 60.224 45.455 0.00 0.00 0.00 3.16
82 83 1.714541 TGGCTTGGCTCAAAATTGGA 58.285 45.000 0.00 0.00 0.00 3.53
83 84 2.045524 TGGCTTGGCTCAAAATTGGAA 58.954 42.857 0.00 0.00 0.00 3.53
84 85 2.638855 TGGCTTGGCTCAAAATTGGAAT 59.361 40.909 0.00 0.00 0.00 3.01
85 86 3.004862 GGCTTGGCTCAAAATTGGAATG 58.995 45.455 0.00 0.00 0.00 2.67
86 87 3.306919 GGCTTGGCTCAAAATTGGAATGA 60.307 43.478 0.00 0.00 0.00 2.57
87 88 3.930848 GCTTGGCTCAAAATTGGAATGAG 59.069 43.478 0.00 0.00 42.70 2.90
88 89 4.322198 GCTTGGCTCAAAATTGGAATGAGA 60.322 41.667 12.42 0.00 42.48 3.27
89 90 5.626116 GCTTGGCTCAAAATTGGAATGAGAT 60.626 40.000 12.42 0.00 42.48 2.75
90 91 5.587388 TGGCTCAAAATTGGAATGAGATC 57.413 39.130 12.42 0.00 42.48 2.75
91 92 4.403432 TGGCTCAAAATTGGAATGAGATCC 59.597 41.667 12.42 7.35 42.48 3.36
92 93 4.648307 GGCTCAAAATTGGAATGAGATCCT 59.352 41.667 12.42 0.00 42.48 3.24
93 94 5.451520 GGCTCAAAATTGGAATGAGATCCTG 60.452 44.000 12.42 0.00 42.48 3.86
94 95 5.126707 GCTCAAAATTGGAATGAGATCCTGT 59.873 40.000 12.42 0.00 42.48 4.00
95 96 6.350780 GCTCAAAATTGGAATGAGATCCTGTT 60.351 38.462 12.42 0.00 42.48 3.16
139 140 0.036022 AGCCTGAAAGCTCACTCCAC 59.964 55.000 0.00 0.00 39.48 4.02
153 154 1.134491 ACTCCACTAGCGGGCATAAAC 60.134 52.381 0.00 0.00 0.00 2.01
170 171 2.474410 AACCCCTCGAAATCACTGAC 57.526 50.000 0.00 0.00 0.00 3.51
174 175 3.195825 ACCCCTCGAAATCACTGACTAAG 59.804 47.826 0.00 0.00 0.00 2.18
175 176 3.430929 CCCCTCGAAATCACTGACTAAGG 60.431 52.174 0.00 0.00 0.00 2.69
185 186 2.999355 CACTGACTAAGGAGCTGCTTTC 59.001 50.000 26.26 18.06 0.00 2.62
186 187 2.903135 ACTGACTAAGGAGCTGCTTTCT 59.097 45.455 26.26 11.14 0.00 2.52
190 191 5.665459 TGACTAAGGAGCTGCTTTCTAATC 58.335 41.667 26.26 15.50 0.00 1.75
206 207 1.794714 AATCCAGCCTCTCACCGTAT 58.205 50.000 0.00 0.00 0.00 3.06
234 235 6.719370 TCTTGCTATTCAGGGTGTGTTTTTAT 59.281 34.615 0.00 0.00 0.00 1.40
236 237 6.007076 TGCTATTCAGGGTGTGTTTTTATCA 58.993 36.000 0.00 0.00 0.00 2.15
239 240 5.766150 TTCAGGGTGTGTTTTTATCACTG 57.234 39.130 0.00 0.00 36.83 3.66
245 246 5.286438 GGTGTGTTTTTATCACTGGGTTTC 58.714 41.667 0.00 0.00 36.83 2.78
246 247 5.286438 GTGTGTTTTTATCACTGGGTTTCC 58.714 41.667 0.00 0.00 36.83 3.13
250 251 7.013846 TGTGTTTTTATCACTGGGTTTCCTTAG 59.986 37.037 0.00 0.00 36.83 2.18
252 253 4.855298 TTATCACTGGGTTTCCTTAGGG 57.145 45.455 0.00 0.00 0.00 3.53
257 258 3.055312 CACTGGGTTTCCTTAGGGTCTAC 60.055 52.174 0.00 0.00 0.00 2.59
287 288 4.903730 CGATCGCCGTCAGAGTAG 57.096 61.111 0.26 0.00 0.00 2.57
288 289 2.308344 CGATCGCCGTCAGAGTAGA 58.692 57.895 0.26 0.00 0.00 2.59
289 290 0.042013 CGATCGCCGTCAGAGTAGAC 60.042 60.000 0.26 0.00 35.19 2.59
308 309 0.027324 CGTACTTCGTACCTCCTCGC 59.973 60.000 0.00 0.00 35.81 5.03
309 310 0.380024 GTACTTCGTACCTCCTCGCC 59.620 60.000 0.00 0.00 33.38 5.54
310 311 1.091771 TACTTCGTACCTCCTCGCCG 61.092 60.000 0.00 0.00 0.00 6.46
311 312 3.122250 CTTCGTACCTCCTCGCCGG 62.122 68.421 0.00 0.00 0.00 6.13
312 313 3.626996 TTCGTACCTCCTCGCCGGA 62.627 63.158 5.05 0.00 40.30 5.14
313 314 3.136123 CGTACCTCCTCGCCGGAA 61.136 66.667 5.05 0.00 42.53 4.30
314 315 2.487532 CGTACCTCCTCGCCGGAAT 61.488 63.158 5.05 0.00 42.53 3.01
315 316 1.821258 GTACCTCCTCGCCGGAATT 59.179 57.895 5.05 0.00 42.53 2.17
316 317 0.249363 GTACCTCCTCGCCGGAATTC 60.249 60.000 5.05 0.00 42.53 2.17
317 318 1.397390 TACCTCCTCGCCGGAATTCC 61.397 60.000 15.01 15.01 42.53 3.01
318 319 2.109181 CTCCTCGCCGGAATTCCC 59.891 66.667 19.01 4.80 42.53 3.97
319 320 3.462199 CTCCTCGCCGGAATTCCCC 62.462 68.421 19.01 9.12 42.53 4.81
320 321 3.480133 CCTCGCCGGAATTCCCCT 61.480 66.667 19.01 0.00 33.16 4.79
321 322 2.109181 CTCGCCGGAATTCCCCTC 59.891 66.667 19.01 7.02 0.00 4.30
322 323 2.685743 TCGCCGGAATTCCCCTCA 60.686 61.111 19.01 0.00 0.00 3.86
325 326 2.998097 CCGGAATTCCCCTCAGCA 59.002 61.111 19.01 0.00 0.00 4.41
327 328 1.604378 CGGAATTCCCCTCAGCAGT 59.396 57.895 19.01 0.00 0.00 4.40
331 332 2.505364 AATTCCCCTCAGCAGTGGGC 62.505 60.000 10.62 0.00 45.38 5.36
345 346 2.437281 CAGTGGGCAGTCCTCTCAATAT 59.563 50.000 0.00 0.00 37.26 1.28
405 406 2.372688 GGGGGATGGGAGGTCTGA 59.627 66.667 0.00 0.00 0.00 3.27
406 407 1.073397 GGGGGATGGGAGGTCTGAT 60.073 63.158 0.00 0.00 0.00 2.90
407 408 1.130678 GGGGGATGGGAGGTCTGATC 61.131 65.000 0.00 0.00 0.00 2.92
408 409 0.104725 GGGGATGGGAGGTCTGATCT 60.105 60.000 0.00 0.00 0.00 2.75
409 410 1.150135 GGGGATGGGAGGTCTGATCTA 59.850 57.143 0.00 0.00 0.00 1.98
410 411 2.534990 GGGATGGGAGGTCTGATCTAG 58.465 57.143 0.00 0.00 0.00 2.43
411 412 2.534990 GGATGGGAGGTCTGATCTAGG 58.465 57.143 0.00 0.00 0.00 3.02
412 413 1.899142 GATGGGAGGTCTGATCTAGGC 59.101 57.143 0.00 0.00 0.00 3.93
413 414 0.468214 TGGGAGGTCTGATCTAGGCG 60.468 60.000 0.00 0.00 0.00 5.52
414 415 1.182385 GGGAGGTCTGATCTAGGCGG 61.182 65.000 0.00 0.00 0.00 6.13
415 416 0.178987 GGAGGTCTGATCTAGGCGGA 60.179 60.000 0.00 0.00 0.00 5.54
416 417 1.243902 GAGGTCTGATCTAGGCGGAG 58.756 60.000 0.00 0.00 0.00 4.63
417 418 0.847373 AGGTCTGATCTAGGCGGAGA 59.153 55.000 0.00 0.00 0.00 3.71
418 419 1.427368 AGGTCTGATCTAGGCGGAGAT 59.573 52.381 4.83 4.83 38.94 2.75
419 420 1.543802 GGTCTGATCTAGGCGGAGATG 59.456 57.143 9.34 0.00 36.27 2.90
431 432 0.473886 CGGAGATGGGGGTAGGGAAT 60.474 60.000 0.00 0.00 0.00 3.01
435 436 2.514160 GAGATGGGGGTAGGGAATGTTT 59.486 50.000 0.00 0.00 0.00 2.83
436 437 2.244769 AGATGGGGGTAGGGAATGTTTG 59.755 50.000 0.00 0.00 0.00 2.93
437 438 1.761711 TGGGGGTAGGGAATGTTTGA 58.238 50.000 0.00 0.00 0.00 2.69
448 449 6.636454 AGGGAATGTTTGAGTTGTATCCTA 57.364 37.500 0.00 0.00 0.00 2.94
450 451 6.884836 AGGGAATGTTTGAGTTGTATCCTAAC 59.115 38.462 0.00 0.00 0.00 2.34
453 454 7.361799 GGAATGTTTGAGTTGTATCCTAACACC 60.362 40.741 0.00 0.00 30.44 4.16
462 463 3.770933 TGTATCCTAACACCAGTGTACCC 59.229 47.826 3.43 0.00 44.13 3.69
482 483 4.782156 ACCCTCTATCCTCATCATCCATTC 59.218 45.833 0.00 0.00 0.00 2.67
499 500 3.853671 CCATTCTTGCATAAAGTTCGTGC 59.146 43.478 5.69 5.69 37.18 5.34
513 520 6.389622 AAGTTCGTGCAAGAAAACTTTTTC 57.610 33.333 16.80 6.36 45.22 2.29
531 538 9.817809 AACTTTTTCTCTCCCAAATAAAAGAAC 57.182 29.630 0.00 0.00 36.56 3.01
532 539 8.977412 ACTTTTTCTCTCCCAAATAAAAGAACA 58.023 29.630 0.00 0.00 36.56 3.18
533 540 9.987272 CTTTTTCTCTCCCAAATAAAAGAACAT 57.013 29.630 0.00 0.00 35.62 2.71
536 543 9.762933 TTTCTCTCCCAAATAAAAGAACATTTG 57.237 29.630 0.00 0.00 40.33 2.32
553 561 4.037923 ACATTTGGACTCGAAACTTTGCAT 59.962 37.500 0.00 0.00 0.00 3.96
573 581 5.936956 TGCATATCAACATCACACAAGTACA 59.063 36.000 0.00 0.00 0.00 2.90
574 582 6.598850 TGCATATCAACATCACACAAGTACAT 59.401 34.615 0.00 0.00 0.00 2.29
575 583 7.128331 GCATATCAACATCACACAAGTACATC 58.872 38.462 0.00 0.00 0.00 3.06
576 584 7.201635 GCATATCAACATCACACAAGTACATCA 60.202 37.037 0.00 0.00 0.00 3.07
577 585 8.833493 CATATCAACATCACACAAGTACATCAT 58.167 33.333 0.00 0.00 0.00 2.45
579 587 5.997129 TCAACATCACACAAGTACATCATGT 59.003 36.000 0.00 0.00 0.00 3.21
580 588 5.868043 ACATCACACAAGTACATCATGTG 57.132 39.130 0.00 15.26 46.88 3.21
597 605 9.598517 ACATCATGTGTACAAAAGTTTTCATTT 57.401 25.926 0.00 0.00 39.91 2.32
743 2744 5.731599 TTTTGAATTGTTTGCCACATGTC 57.268 34.783 0.00 0.00 34.43 3.06
746 2747 3.384146 TGAATTGTTTGCCACATGTCTGT 59.616 39.130 0.00 0.00 34.43 3.41
758 2759 4.867047 CCACATGTCTGTCACTTGTCTATC 59.133 45.833 0.00 0.00 40.55 2.08
762 2763 5.196341 TGTCTGTCACTTGTCTATCGTTT 57.804 39.130 0.00 0.00 0.00 3.60
768 2769 9.731819 TCTGTCACTTGTCTATCGTTTTATATC 57.268 33.333 0.00 0.00 0.00 1.63
812 2821 8.013236 TGTTTGGAAGAAACGAAAAAGAAAAG 57.987 30.769 0.00 0.00 33.05 2.27
842 2851 4.471904 AAGGATAGCACGAATCTTGACA 57.528 40.909 0.00 0.00 0.00 3.58
856 2865 5.695851 ATCTTGACACAAACTGAATGGTC 57.304 39.130 0.00 0.00 0.00 4.02
867 2876 7.063898 CACAAACTGAATGGTCTAGATAGTGTG 59.936 40.741 0.00 2.91 0.00 3.82
876 2885 3.570550 GTCTAGATAGTGTGGAGGCGATT 59.429 47.826 0.00 0.00 0.00 3.34
880 2889 1.557099 TAGTGTGGAGGCGATTCTGT 58.443 50.000 0.00 0.00 0.00 3.41
906 2915 4.629523 TGGCCCCGACGTTTGGAC 62.630 66.667 0.00 3.75 0.00 4.02
907 2916 4.324991 GGCCCCGACGTTTGGACT 62.325 66.667 9.18 0.00 0.00 3.85
916 2932 1.007387 CGTTTGGACTTGCCTTGGC 60.007 57.895 4.43 4.43 37.63 4.52
919 2935 4.659172 TGGACTTGCCTTGGCCCG 62.659 66.667 9.35 2.66 37.63 6.13
931 2947 3.053896 GGCCCGGACGTTTCAAGG 61.054 66.667 0.73 0.00 0.00 3.61
936 2952 0.872388 CCGGACGTTTCAAGGGAAAG 59.128 55.000 0.00 0.00 43.35 2.62
937 2953 1.541670 CCGGACGTTTCAAGGGAAAGA 60.542 52.381 0.00 0.00 43.35 2.52
938 2954 2.215196 CGGACGTTTCAAGGGAAAGAA 58.785 47.619 0.00 0.00 43.35 2.52
939 2955 2.614983 CGGACGTTTCAAGGGAAAGAAA 59.385 45.455 0.00 0.00 43.35 2.52
940 2956 3.065648 CGGACGTTTCAAGGGAAAGAAAA 59.934 43.478 0.00 0.00 43.35 2.29
941 2957 4.357142 GGACGTTTCAAGGGAAAGAAAAC 58.643 43.478 0.00 0.00 43.35 2.43
942 2958 4.023739 ACGTTTCAAGGGAAAGAAAACG 57.976 40.909 14.79 14.79 43.35 3.60
943 2959 3.690628 ACGTTTCAAGGGAAAGAAAACGA 59.309 39.130 21.07 0.00 43.35 3.85
965 2981 1.074072 TCCTTTTTAGCTGCCGCCA 59.926 52.632 0.00 0.00 36.60 5.69
966 2982 1.212751 CCTTTTTAGCTGCCGCCAC 59.787 57.895 0.00 0.00 36.60 5.01
967 2983 1.212751 CTTTTTAGCTGCCGCCACC 59.787 57.895 0.00 0.00 36.60 4.61
968 2984 1.523154 CTTTTTAGCTGCCGCCACCA 61.523 55.000 0.00 0.00 36.60 4.17
969 2985 0.897863 TTTTTAGCTGCCGCCACCAT 60.898 50.000 0.00 0.00 36.60 3.55
970 2986 0.034960 TTTTAGCTGCCGCCACCATA 60.035 50.000 0.00 0.00 36.60 2.74
971 2987 0.182537 TTTAGCTGCCGCCACCATAT 59.817 50.000 0.00 0.00 36.60 1.78
974 2990 0.250467 AGCTGCCGCCACCATATAAG 60.250 55.000 0.00 0.00 36.60 1.73
976 2992 1.512926 CTGCCGCCACCATATAAGAC 58.487 55.000 0.00 0.00 0.00 3.01
977 2993 0.249699 TGCCGCCACCATATAAGACG 60.250 55.000 0.00 0.00 0.00 4.18
978 2994 0.949105 GCCGCCACCATATAAGACGG 60.949 60.000 0.00 0.00 41.97 4.79
979 2995 0.677288 CCGCCACCATATAAGACGGA 59.323 55.000 0.00 0.00 41.61 4.69
980 2996 1.069513 CCGCCACCATATAAGACGGAA 59.930 52.381 0.00 0.00 41.61 4.30
981 2997 2.484065 CCGCCACCATATAAGACGGAAA 60.484 50.000 0.00 0.00 41.61 3.13
982 2998 3.199677 CGCCACCATATAAGACGGAAAA 58.800 45.455 0.00 0.00 0.00 2.29
983 2999 3.247648 CGCCACCATATAAGACGGAAAAG 59.752 47.826 0.00 0.00 0.00 2.27
996 3012 3.676093 ACGGAAAAGGAGTCAGAATTCC 58.324 45.455 0.65 0.00 34.39 3.01
1027 3043 4.758251 CCACGATGGCAGCACCGA 62.758 66.667 2.73 0.00 43.94 4.69
1030 3046 4.794439 CGATGGCAGCACCGACGA 62.794 66.667 2.73 0.00 43.94 4.20
1424 3455 2.037144 GGGTAGGATTAAGCTCGACCA 58.963 52.381 11.43 0.00 0.00 4.02
1443 3474 1.383248 CCTCCGGGACTTCCTCCAT 60.383 63.158 0.00 0.00 41.63 3.41
1446 3477 0.931468 TCCGGGACTTCCTCCATCTA 59.069 55.000 0.00 0.00 41.63 1.98
1449 3480 1.749635 CGGGACTTCCTCCATCTACGA 60.750 57.143 0.00 0.00 41.63 3.43
1452 3483 1.334243 GACTTCCTCCATCTACGACCG 59.666 57.143 0.00 0.00 0.00 4.79
1497 3528 1.363443 GAGGATGAGGAGCGAGCTG 59.637 63.158 0.84 0.00 0.00 4.24
1533 3564 0.536006 CATTCTTCCGGGAGATGGGC 60.536 60.000 14.89 0.00 0.00 5.36
1537 3568 2.330924 CTTCCGGGAGATGGGCTTCC 62.331 65.000 2.45 0.00 39.12 3.46
1605 3636 0.741221 GCGAGATGTTCCAGGTGACC 60.741 60.000 0.00 0.00 0.00 4.02
1656 3687 2.185608 GACCTCCGGCTGAAGCTC 59.814 66.667 0.00 0.00 41.70 4.09
1657 3688 2.284258 ACCTCCGGCTGAAGCTCT 60.284 61.111 0.00 0.00 41.70 4.09
1658 3689 2.291457 GACCTCCGGCTGAAGCTCTC 62.291 65.000 0.00 0.00 41.70 3.20
1659 3690 2.103934 CTCCGGCTGAAGCTCTCG 59.896 66.667 0.00 0.00 41.70 4.04
1660 3691 3.423162 CTCCGGCTGAAGCTCTCGG 62.423 68.421 10.97 10.97 42.21 4.63
1665 3696 3.452786 CTGAAGCTCTCGGCCGGA 61.453 66.667 27.83 20.03 43.05 5.14
1680 3711 3.844090 GGAGCTCCTCGCCAGGAC 61.844 72.222 26.25 0.00 44.75 3.85
1682 3713 4.742649 AGCTCCTCGCCAGGACGA 62.743 66.667 0.00 5.94 44.75 4.20
1691 3722 1.070445 GCCAGGACGAGGATGATGG 59.930 63.158 0.00 0.00 0.00 3.51
1692 3723 1.690219 GCCAGGACGAGGATGATGGT 61.690 60.000 0.00 0.00 0.00 3.55
1693 3724 0.390860 CCAGGACGAGGATGATGGTC 59.609 60.000 0.00 0.00 0.00 4.02
1724 3764 4.369182 GGTTTCGAGAGTGACTTCTTCAA 58.631 43.478 0.00 0.00 35.39 2.69
1864 3904 1.667154 CCTCGCCGAGTTCTGGATGA 61.667 60.000 13.83 0.00 0.00 2.92
1888 3928 2.878991 CGGAGATCGCGTTCGCAA 60.879 61.111 20.03 0.00 35.26 4.85
1914 3954 6.963796 CCTGCAGGTAATCTAATCAATCAAC 58.036 40.000 25.53 0.00 0.00 3.18
1915 3955 6.543465 CCTGCAGGTAATCTAATCAATCAACA 59.457 38.462 25.53 0.00 0.00 3.33
1916 3956 7.067372 CCTGCAGGTAATCTAATCAATCAACAA 59.933 37.037 25.53 0.00 0.00 2.83
1917 3957 7.761409 TGCAGGTAATCTAATCAATCAACAAC 58.239 34.615 0.00 0.00 0.00 3.32
1918 3958 6.907212 GCAGGTAATCTAATCAATCAACAACG 59.093 38.462 0.00 0.00 0.00 4.10
1921 3961 7.280205 AGGTAATCTAATCAATCAACAACGTCC 59.720 37.037 0.00 0.00 0.00 4.79
1922 3962 7.280205 GGTAATCTAATCAATCAACAACGTCCT 59.720 37.037 0.00 0.00 0.00 3.85
1924 3964 5.175859 TCTAATCAATCAACAACGTCCTCC 58.824 41.667 0.00 0.00 0.00 4.30
1926 3966 3.040147 TCAATCAACAACGTCCTCCTC 57.960 47.619 0.00 0.00 0.00 3.71
1927 3967 2.632996 TCAATCAACAACGTCCTCCTCT 59.367 45.455 0.00 0.00 0.00 3.69
1928 3968 2.738846 CAATCAACAACGTCCTCCTCTG 59.261 50.000 0.00 0.00 0.00 3.35
1929 3969 1.410004 TCAACAACGTCCTCCTCTGT 58.590 50.000 0.00 0.00 0.00 3.41
1930 3970 2.589720 TCAACAACGTCCTCCTCTGTA 58.410 47.619 0.00 0.00 0.00 2.74
1931 3971 2.295349 TCAACAACGTCCTCCTCTGTAC 59.705 50.000 0.00 0.00 0.00 2.90
1932 3972 1.991121 ACAACGTCCTCCTCTGTACA 58.009 50.000 0.00 0.00 0.00 2.90
1933 3973 2.526432 ACAACGTCCTCCTCTGTACAT 58.474 47.619 0.00 0.00 0.00 2.29
1934 3974 2.492484 ACAACGTCCTCCTCTGTACATC 59.508 50.000 0.00 0.00 0.00 3.06
1935 3975 2.492088 CAACGTCCTCCTCTGTACATCA 59.508 50.000 0.00 0.00 0.00 3.07
1936 3976 3.019799 ACGTCCTCCTCTGTACATCAT 57.980 47.619 0.00 0.00 0.00 2.45
1938 3978 3.769844 ACGTCCTCCTCTGTACATCATTT 59.230 43.478 0.00 0.00 0.00 2.32
1939 3979 4.115516 CGTCCTCCTCTGTACATCATTTG 58.884 47.826 0.00 0.00 0.00 2.32
1940 3980 4.142160 CGTCCTCCTCTGTACATCATTTGA 60.142 45.833 0.00 0.00 0.00 2.69
1941 3981 5.355596 GTCCTCCTCTGTACATCATTTGAG 58.644 45.833 0.00 0.00 0.00 3.02
1942 3982 5.026121 TCCTCCTCTGTACATCATTTGAGT 58.974 41.667 0.00 0.00 0.00 3.41
1943 3983 5.105187 TCCTCCTCTGTACATCATTTGAGTG 60.105 44.000 0.00 0.00 0.00 3.51
1944 3984 5.105187 CCTCCTCTGTACATCATTTGAGTGA 60.105 44.000 0.00 0.00 0.00 3.41
1961 4032 3.929610 GAGTGATGTTACCAGCTGAACTC 59.070 47.826 17.39 11.78 0.00 3.01
1968 4039 0.032678 ACCAGCTGAACTCTGTCACG 59.967 55.000 17.39 0.00 0.00 4.35
2001 4072 6.725369 AGGATATCATGAACTATGCAGAGAGT 59.275 38.462 16.75 3.95 36.70 3.24
2088 4159 3.845781 ACCCATGATAAGTCTGCGATT 57.154 42.857 0.00 0.00 0.00 3.34
2097 4168 0.179150 AGTCTGCGATTGAGCGTCTC 60.179 55.000 0.00 0.58 40.67 3.36
2109 4180 1.442184 GCGTCTCGAGCTCGTTTCA 60.442 57.895 33.33 15.18 40.80 2.69
2133 4204 0.937699 CGCCTTTCGAACGTGTCTCA 60.938 55.000 0.00 0.00 41.67 3.27
2136 4207 2.344741 GCCTTTCGAACGTGTCTCATAC 59.655 50.000 0.00 0.00 0.00 2.39
2148 4219 3.664107 TGTCTCATACACAAAGGCTGTC 58.336 45.455 0.00 0.00 35.47 3.51
2151 4222 3.006430 TCTCATACACAAAGGCTGTCGAA 59.994 43.478 0.00 0.00 35.47 3.71
2154 4225 4.154015 TCATACACAAAGGCTGTCGAAATG 59.846 41.667 0.00 0.00 35.47 2.32
2159 4230 1.160137 AAGGCTGTCGAAATGCTGAC 58.840 50.000 0.00 0.00 35.67 3.51
2190 4261 2.703536 TGGTAGCAAGAAGTTCCAGACA 59.296 45.455 0.00 0.00 0.00 3.41
2193 4264 4.214332 GGTAGCAAGAAGTTCCAGACAAAG 59.786 45.833 0.00 0.00 0.00 2.77
2220 4291 1.760613 TGGGGAATCGATTTAGCGTCT 59.239 47.619 12.81 0.00 0.00 4.18
2236 4307 2.861750 GCGTCTGAGCATGAGAGGTATG 60.862 54.545 0.00 0.00 36.59 2.39
2241 4312 6.072452 CGTCTGAGCATGAGAGGTATGTATAA 60.072 42.308 0.00 0.00 29.53 0.98
2248 4319 9.881649 AGCATGAGAGGTATGTATAATTGTATG 57.118 33.333 0.00 0.00 0.00 2.39
2252 4323 7.812669 TGAGAGGTATGTATAATTGTATGCACG 59.187 37.037 0.00 0.00 35.47 5.34
2254 4325 8.799367 AGAGGTATGTATAATTGTATGCACGTA 58.201 33.333 0.00 0.00 35.47 3.57
2275 4346 5.333339 CGTATGCAGATACAGTTATTGGCAC 60.333 44.000 0.00 0.00 35.07 5.01
2295 4366 8.347004 TGGCACTGATATTTCTGTTATTTTCA 57.653 30.769 0.00 0.00 32.29 2.69
2296 4367 8.970020 TGGCACTGATATTTCTGTTATTTTCAT 58.030 29.630 0.00 0.00 32.29 2.57
2297 4368 9.241317 GGCACTGATATTTCTGTTATTTTCATG 57.759 33.333 0.00 0.00 32.29 3.07
2298 4369 9.793252 GCACTGATATTTCTGTTATTTTCATGT 57.207 29.630 0.00 0.00 32.29 3.21
2324 4395 3.878160 ATCGTTGTTTGGGTTGTTGTT 57.122 38.095 0.00 0.00 0.00 2.83
2332 4403 3.810310 TTGGGTTGTTGTTGTGATTCC 57.190 42.857 0.00 0.00 0.00 3.01
2345 4416 4.159377 TGTGATTCCGAATTTCTTGCAC 57.841 40.909 0.00 0.00 0.00 4.57
2375 4446 6.875972 AGGTACTTGACTGAGGTGATATTT 57.124 37.500 0.00 0.00 27.25 1.40
2378 4449 8.822805 AGGTACTTGACTGAGGTGATATTTAAA 58.177 33.333 0.00 0.00 27.25 1.52
2390 4461 8.000780 AGGTGATATTTAAAAAGCCTGTCATC 57.999 34.615 0.00 0.00 0.00 2.92
2453 4524 2.611518 CTCAACGATGACCAGAAGACC 58.388 52.381 0.00 0.00 0.00 3.85
2462 4533 2.743928 CAGAAGACCGTGGCTGCC 60.744 66.667 12.87 12.87 0.00 4.85
2474 4545 0.918258 TGGCTGCCATGGATGTTCTA 59.082 50.000 19.30 0.00 0.00 2.10
2486 4557 4.431378 TGGATGTTCTAGTTCCCAAGGTA 58.569 43.478 0.00 0.00 0.00 3.08
2583 4657 5.954150 ACCTTAATTGATCTTTGATGTGGCT 59.046 36.000 0.00 0.00 0.00 4.75
2585 4659 7.038799 ACCTTAATTGATCTTTGATGTGGCTTT 60.039 33.333 0.00 0.00 0.00 3.51
2586 4660 7.820872 CCTTAATTGATCTTTGATGTGGCTTTT 59.179 33.333 0.00 0.00 0.00 2.27
2614 4688 2.896685 GGTTGGTGAATTGATTGGTGGA 59.103 45.455 0.00 0.00 0.00 4.02
2637 4711 3.141488 GAGGGAGGAGCGCTTCGA 61.141 66.667 13.26 0.00 40.28 3.71
2659 4733 5.461078 CGATATCCTTAAACAACGGTACCAG 59.539 44.000 13.54 7.45 0.00 4.00
2661 4735 1.461897 CCTTAAACAACGGTACCAGCG 59.538 52.381 13.54 0.00 45.69 5.18
2666 4740 1.964373 CAACGGTACCAGCGCCTTT 60.964 57.895 13.54 0.00 43.79 3.11
2668 4742 1.232621 AACGGTACCAGCGCCTTTTC 61.233 55.000 13.54 0.00 43.79 2.29
2669 4743 1.375523 CGGTACCAGCGCCTTTTCT 60.376 57.895 13.54 0.00 30.39 2.52
2672 4746 2.640184 GGTACCAGCGCCTTTTCTTAT 58.360 47.619 7.15 0.00 0.00 1.73
2673 4747 3.738899 CGGTACCAGCGCCTTTTCTTATA 60.739 47.826 13.54 0.00 30.39 0.98
2675 4749 4.820173 GGTACCAGCGCCTTTTCTTATATT 59.180 41.667 7.15 0.00 0.00 1.28
2677 4751 5.248870 ACCAGCGCCTTTTCTTATATTTG 57.751 39.130 2.29 0.00 0.00 2.32
2678 4752 4.097892 ACCAGCGCCTTTTCTTATATTTGG 59.902 41.667 2.29 1.80 0.00 3.28
2679 4753 4.338118 CCAGCGCCTTTTCTTATATTTGGA 59.662 41.667 2.29 0.00 0.00 3.53
2680 4754 5.163561 CCAGCGCCTTTTCTTATATTTGGAA 60.164 40.000 2.29 0.00 0.00 3.53
2681 4755 6.329496 CAGCGCCTTTTCTTATATTTGGAAA 58.671 36.000 2.29 0.00 0.00 3.13
2682 4756 6.811170 CAGCGCCTTTTCTTATATTTGGAAAA 59.189 34.615 2.29 0.00 37.39 2.29
2683 4757 7.330700 CAGCGCCTTTTCTTATATTTGGAAAAA 59.669 33.333 2.29 0.00 38.11 1.94
2730 4827 7.928307 ACCAATCCATGTCTGCATATAATAC 57.072 36.000 0.00 0.00 33.30 1.89
2793 4890 7.201920 ACATGTTGTGTATCTAGGATACTGGAC 60.202 40.741 15.66 11.89 45.30 4.02
2874 4971 4.077184 CACAGCGGGTTCGGGCTA 62.077 66.667 0.00 0.00 37.41 3.93
2904 5001 0.034670 GGATGCTCCTCTTTGCCACT 60.035 55.000 0.00 0.00 32.53 4.00
2940 5037 0.394565 GAGATGTCATCCCCTTCCCG 59.605 60.000 9.29 0.00 0.00 5.14
2943 5040 0.031111 ATGTCATCCCCTTCCCGAGA 60.031 55.000 0.00 0.00 0.00 4.04
2984 5081 4.286549 CCTATGAAGATCTGATTGGCCTCT 59.713 45.833 3.32 0.00 0.00 3.69
2985 5082 3.555527 TGAAGATCTGATTGGCCTCTG 57.444 47.619 3.32 0.00 0.00 3.35
3020 5117 7.099764 CACAAGTTGTCCATAGTCTGATAACT 58.900 38.462 5.27 0.00 42.44 2.24
3031 5128 8.056400 CCATAGTCTGATAACTAGCTAGGGTAT 58.944 40.741 24.35 19.34 35.31 2.73
3039 5136 8.327271 TGATAACTAGCTAGGGTATAGTGGTAG 58.673 40.741 24.35 0.00 35.59 3.18
3066 5163 8.543862 AGGTGTAAAGCATAGTAAGTGTAAAC 57.456 34.615 0.00 0.00 0.00 2.01
3095 5197 6.323210 TGTCCATAACTGAGACTAGGAGTA 57.677 41.667 0.00 0.00 0.00 2.59
3103 5205 5.743117 ACTGAGACTAGGAGTAATACGTGT 58.257 41.667 0.00 0.00 0.00 4.49
3112 5214 8.459635 ACTAGGAGTAATACGTGTGCATATATG 58.540 37.037 8.45 8.45 0.00 1.78
3113 5215 7.228314 AGGAGTAATACGTGTGCATATATGT 57.772 36.000 14.14 0.00 0.00 2.29
3115 5217 8.148351 AGGAGTAATACGTGTGCATATATGTTT 58.852 33.333 14.14 0.00 0.00 2.83
3118 5220 8.547894 AGTAATACGTGTGCATATATGTTTGTG 58.452 33.333 14.14 5.03 0.00 3.33
3119 5221 7.546778 AATACGTGTGCATATATGTTTGTGA 57.453 32.000 14.14 0.00 0.00 3.58
3120 5222 5.216566 ACGTGTGCATATATGTTTGTGAC 57.783 39.130 14.14 3.27 0.00 3.67
3121 5223 4.201676 ACGTGTGCATATATGTTTGTGACG 60.202 41.667 14.14 14.38 0.00 4.35
3122 5224 4.201676 CGTGTGCATATATGTTTGTGACGT 60.202 41.667 14.14 0.00 0.00 4.34
3123 5225 5.255596 GTGTGCATATATGTTTGTGACGTC 58.744 41.667 9.11 9.11 0.00 4.34
3125 5227 5.641636 TGTGCATATATGTTTGTGACGTCTT 59.358 36.000 17.92 0.00 0.00 3.01
3126 5228 6.148645 TGTGCATATATGTTTGTGACGTCTTT 59.851 34.615 17.92 0.00 0.00 2.52
3128 5230 7.537306 GTGCATATATGTTTGTGACGTCTTTTT 59.463 33.333 17.92 0.00 0.00 1.94
3179 5286 8.514594 TGGTAGAGTTCATGTCAAATTTGAATC 58.485 33.333 22.07 11.61 39.21 2.52
3182 5289 7.088905 AGAGTTCATGTCAAATTTGAATCTGC 58.911 34.615 22.07 10.22 39.21 4.26
3185 5292 8.525316 AGTTCATGTCAAATTTGAATCTGCATA 58.475 29.630 22.07 5.07 39.21 3.14
3190 5297 9.976511 ATGTCAAATTTGAATCTGCATATAAGG 57.023 29.630 22.07 0.00 39.21 2.69
3191 5298 9.187996 TGTCAAATTTGAATCTGCATATAAGGA 57.812 29.630 22.07 0.00 39.21 3.36
3200 5307 7.547019 TGAATCTGCATATAAGGATCGATTGTC 59.453 37.037 0.00 0.00 0.00 3.18
3202 5309 4.832248 TGCATATAAGGATCGATTGTCCC 58.168 43.478 0.00 0.00 36.36 4.46
3204 5311 4.872691 GCATATAAGGATCGATTGTCCCAG 59.127 45.833 0.00 0.00 36.36 4.45
3218 5325 4.647424 TGTCCCAGTTGAATTGTTGTTC 57.353 40.909 0.00 0.00 0.00 3.18
3221 5328 4.338118 GTCCCAGTTGAATTGTTGTTCTGA 59.662 41.667 0.00 0.00 0.00 3.27
3230 5337 7.928908 TGAATTGTTGTTCTGAAGCATAAAC 57.071 32.000 0.00 0.00 0.00 2.01
3247 5354 5.519722 CATAAACGAAAAACAGACCAGCTT 58.480 37.500 0.00 0.00 0.00 3.74
3265 5372 4.862902 GCTTCTAGCTCATCCATACAGA 57.137 45.455 0.00 0.00 38.45 3.41
3266 5373 4.808558 GCTTCTAGCTCATCCATACAGAG 58.191 47.826 0.00 0.00 38.45 3.35
3300 5407 2.803030 ATCAGCTGCTCAAATCAGGT 57.197 45.000 9.47 0.00 42.32 4.00
3302 5409 2.564471 AGCTGCTCAAATCAGGTGC 58.436 52.632 0.00 0.00 40.35 5.01
3337 5444 7.500992 ACTAGAGTTGTCAACTGAATTTCTCA 58.499 34.615 22.83 2.45 43.03 3.27
3359 5466 4.782019 ATATAGCTTCTCTCTTCCAGCG 57.218 45.455 0.00 0.00 37.35 5.18
3379 5486 6.147164 CCAGCGTAATTTTGTAGAGAAAGACA 59.853 38.462 0.00 0.00 0.00 3.41
3407 5514 2.099141 TGTTTCTCTTGATCTGCCCG 57.901 50.000 0.00 0.00 0.00 6.13
3419 5526 4.641396 TGATCTGCCCGAGGTATTTTATG 58.359 43.478 0.00 0.00 0.00 1.90
3420 5527 4.102524 TGATCTGCCCGAGGTATTTTATGT 59.897 41.667 0.00 0.00 0.00 2.29
3476 5584 9.679661 TTTTGATATAGCTAACCACTCATTTCA 57.320 29.630 0.00 0.00 0.00 2.69
3489 5597 5.303971 CACTCATTTCAAGTGGTCTTCTCT 58.696 41.667 0.00 0.00 40.36 3.10
3490 5598 5.762218 CACTCATTTCAAGTGGTCTTCTCTT 59.238 40.000 0.00 0.00 40.36 2.85
3491 5599 6.931281 CACTCATTTCAAGTGGTCTTCTCTTA 59.069 38.462 0.00 0.00 40.36 2.10
3492 5600 6.931840 ACTCATTTCAAGTGGTCTTCTCTTAC 59.068 38.462 0.00 0.00 0.00 2.34
3493 5601 6.826668 TCATTTCAAGTGGTCTTCTCTTACA 58.173 36.000 0.00 0.00 0.00 2.41
3494 5602 6.931281 TCATTTCAAGTGGTCTTCTCTTACAG 59.069 38.462 0.00 0.00 0.00 2.74
3495 5603 5.871396 TTCAAGTGGTCTTCTCTTACAGT 57.129 39.130 0.00 0.00 0.00 3.55
3496 5604 5.871396 TCAAGTGGTCTTCTCTTACAGTT 57.129 39.130 0.00 0.00 0.00 3.16
3497 5605 5.844004 TCAAGTGGTCTTCTCTTACAGTTC 58.156 41.667 0.00 0.00 0.00 3.01
3498 5606 5.598830 TCAAGTGGTCTTCTCTTACAGTTCT 59.401 40.000 0.00 0.00 0.00 3.01
3499 5607 6.776116 TCAAGTGGTCTTCTCTTACAGTTCTA 59.224 38.462 0.00 0.00 0.00 2.10
3526 5634 7.173863 ACACGTAGAATTTCTAACACAACAG 57.826 36.000 7.70 0.00 29.58 3.16
3527 5635 6.202188 ACACGTAGAATTTCTAACACAACAGG 59.798 38.462 7.70 0.00 29.58 4.00
3528 5636 5.178809 ACGTAGAATTTCTAACACAACAGGC 59.821 40.000 7.70 0.00 29.58 4.85
3550 5658 1.290009 GCCTTGTCACCAACCATGC 59.710 57.895 0.00 0.00 0.00 4.06
3558 5666 2.342650 ACCAACCATGCATCCACGC 61.343 57.895 0.00 0.00 0.00 5.34
3559 5667 2.491152 CAACCATGCATCCACGCC 59.509 61.111 0.00 0.00 0.00 5.68
3598 5706 5.959618 TCTTGTGTTATCGACTTCTCAGA 57.040 39.130 0.00 0.00 0.00 3.27
3599 5707 6.327279 TCTTGTGTTATCGACTTCTCAGAA 57.673 37.500 0.00 0.00 0.00 3.02
3600 5708 6.382608 TCTTGTGTTATCGACTTCTCAGAAG 58.617 40.000 13.27 13.27 0.00 2.85
3601 5709 4.486090 TGTGTTATCGACTTCTCAGAAGC 58.514 43.478 14.81 6.56 0.00 3.86
3603 5711 3.119101 TGTTATCGACTTCTCAGAAGCCC 60.119 47.826 14.81 5.88 0.00 5.19
3604 5712 1.859302 ATCGACTTCTCAGAAGCCCT 58.141 50.000 14.81 0.00 0.00 5.19
3605 5713 1.633774 TCGACTTCTCAGAAGCCCTT 58.366 50.000 14.81 0.00 0.00 3.95
3606 5714 1.273606 TCGACTTCTCAGAAGCCCTTG 59.726 52.381 14.81 0.00 0.00 3.61
3607 5715 1.001406 CGACTTCTCAGAAGCCCTTGT 59.999 52.381 14.81 0.00 0.00 3.16
3608 5716 2.421619 GACTTCTCAGAAGCCCTTGTG 58.578 52.381 14.81 0.00 35.44 3.33
3609 5717 1.771255 ACTTCTCAGAAGCCCTTGTGT 59.229 47.619 14.81 0.00 35.60 3.72
3610 5718 2.224402 ACTTCTCAGAAGCCCTTGTGTC 60.224 50.000 14.81 0.00 35.60 3.67
3612 5720 1.070758 TCTCAGAAGCCCTTGTGTCAC 59.929 52.381 5.27 0.00 35.60 3.67
3613 5721 0.249868 TCAGAAGCCCTTGTGTCACG 60.250 55.000 5.27 0.00 35.60 4.35
3614 5722 0.249868 CAGAAGCCCTTGTGTCACGA 60.250 55.000 0.00 0.00 0.00 4.35
3615 5723 0.034059 AGAAGCCCTTGTGTCACGAG 59.966 55.000 12.73 12.73 0.00 4.18
3630 5738 1.658717 CGAGGCACGATGGACGATC 60.659 63.158 0.00 0.00 45.77 3.69
3659 5767 0.805322 CAGTGAGCTCGTGATGCCTC 60.805 60.000 9.64 0.00 0.00 4.70
3680 5788 1.087501 GGATGAGTTGGCTTCCGAAC 58.912 55.000 0.00 0.00 0.00 3.95
3696 5804 2.196749 CGAACTGATGGAAGGATCACG 58.803 52.381 0.00 0.00 0.00 4.35
3706 5814 2.280186 GGATCACGGCGCCCTTAG 60.280 66.667 23.46 9.53 0.00 2.18
3713 5821 2.592861 GGCGCCCTTAGATGCAGG 60.593 66.667 18.11 0.00 0.00 4.85
3771 5879 7.510685 ACAAATGCCTCTAGAGAAGGACATATA 59.489 37.037 21.76 0.00 0.00 0.86
3774 5882 7.291411 TGCCTCTAGAGAAGGACATATAAAC 57.709 40.000 21.76 0.00 0.00 2.01
3775 5883 6.839134 TGCCTCTAGAGAAGGACATATAAACA 59.161 38.462 21.76 0.00 0.00 2.83
3776 5884 7.149307 GCCTCTAGAGAAGGACATATAAACAC 58.851 42.308 21.76 0.00 0.00 3.32
3777 5885 7.201920 GCCTCTAGAGAAGGACATATAAACACA 60.202 40.741 21.76 0.00 0.00 3.72
3778 5886 8.138712 CCTCTAGAGAAGGACATATAAACACAC 58.861 40.741 21.76 0.00 0.00 3.82
3779 5887 8.824756 TCTAGAGAAGGACATATAAACACACT 57.175 34.615 0.00 0.00 0.00 3.55
3802 5922 7.270793 CACTATGTTTCTAGATATCGCGTAACC 59.729 40.741 5.77 0.00 0.00 2.85
3807 5927 2.682952 AGATATCGCGTAACCGACTG 57.317 50.000 5.77 0.00 40.40 3.51
3811 5931 0.731514 ATCGCGTAACCGACTGTGTG 60.732 55.000 5.77 0.00 40.40 3.82
3812 5932 2.851104 GCGTAACCGACTGTGTGC 59.149 61.111 0.00 0.00 35.63 4.57
3817 5937 3.761657 CGTAACCGACTGTGTGCTAATA 58.238 45.455 0.00 0.00 35.63 0.98
3818 5938 4.168014 CGTAACCGACTGTGTGCTAATAA 58.832 43.478 0.00 0.00 35.63 1.40
3819 5939 4.030977 CGTAACCGACTGTGTGCTAATAAC 59.969 45.833 0.00 0.00 35.63 1.89
3825 5945 5.392703 CCGACTGTGTGCTAATAACTGACTA 60.393 44.000 0.00 0.00 0.00 2.59
3846 5967 7.283807 TGACTAGTTCACACTTTGTACACTCTA 59.716 37.037 0.00 0.00 34.06 2.43
3868 5989 9.907576 CTCTAGAATTATCTTTTTACTTGCACG 57.092 33.333 0.00 0.00 37.10 5.34
3869 5990 9.431887 TCTAGAATTATCTTTTTACTTGCACGT 57.568 29.630 0.05 0.05 37.10 4.49
3919 6040 9.297037 ACCAACTTAATTGCTAGACAAAATACT 57.703 29.630 0.00 0.00 42.86 2.12
3920 6041 9.774742 CCAACTTAATTGCTAGACAAAATACTC 57.225 33.333 0.00 0.00 42.86 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.161866 GGAGACAGAAGAGACCTCAACT 58.838 50.000 0.00 0.00 0.00 3.16
1 2 2.094957 CGGAGACAGAAGAGACCTCAAC 60.095 54.545 0.00 0.00 0.00 3.18
2 3 2.163509 CGGAGACAGAAGAGACCTCAA 58.836 52.381 0.00 0.00 0.00 3.02
3 4 1.074084 ACGGAGACAGAAGAGACCTCA 59.926 52.381 0.00 0.00 0.00 3.86
4 5 1.470890 CACGGAGACAGAAGAGACCTC 59.529 57.143 0.00 0.00 0.00 3.85
5 6 1.540267 CACGGAGACAGAAGAGACCT 58.460 55.000 0.00 0.00 0.00 3.85
6 7 0.109039 GCACGGAGACAGAAGAGACC 60.109 60.000 0.00 0.00 0.00 3.85
7 8 0.455295 CGCACGGAGACAGAAGAGAC 60.455 60.000 0.00 0.00 0.00 3.36
8 9 1.876664 CGCACGGAGACAGAAGAGA 59.123 57.895 0.00 0.00 0.00 3.10
9 10 1.803519 GCGCACGGAGACAGAAGAG 60.804 63.158 0.30 0.00 0.00 2.85
10 11 2.258591 GCGCACGGAGACAGAAGA 59.741 61.111 0.30 0.00 0.00 2.87
11 12 3.175240 CGCGCACGGAGACAGAAG 61.175 66.667 8.75 0.00 34.97 2.85
21 22 4.759893 CTTTGTCTCGCGCGCACG 62.760 66.667 32.61 20.80 44.07 5.34
22 23 3.702555 ACTTTGTCTCGCGCGCAC 61.703 61.111 32.61 23.65 0.00 5.34
23 24 3.701530 CACTTTGTCTCGCGCGCA 61.702 61.111 32.61 15.46 0.00 6.09
24 25 2.730672 ATCACTTTGTCTCGCGCGC 61.731 57.895 27.95 23.91 0.00 6.86
25 26 1.057822 CATCACTTTGTCTCGCGCG 59.942 57.895 26.76 26.76 0.00 6.86
26 27 1.225854 GCATCACTTTGTCTCGCGC 60.226 57.895 0.00 0.00 0.00 6.86
27 28 1.421485 GGCATCACTTTGTCTCGCG 59.579 57.895 0.00 0.00 0.00 5.87
28 29 1.421485 CGGCATCACTTTGTCTCGC 59.579 57.895 0.00 0.00 0.00 5.03
29 30 1.970917 GCCGGCATCACTTTGTCTCG 61.971 60.000 24.80 0.00 0.00 4.04
30 31 0.955428 TGCCGGCATCACTTTGTCTC 60.955 55.000 29.03 0.00 0.00 3.36
31 32 0.957395 CTGCCGGCATCACTTTGTCT 60.957 55.000 32.87 0.00 0.00 3.41
32 33 0.955428 TCTGCCGGCATCACTTTGTC 60.955 55.000 32.87 0.00 0.00 3.18
33 34 0.537143 TTCTGCCGGCATCACTTTGT 60.537 50.000 32.87 0.00 0.00 2.83
34 35 0.813184 ATTCTGCCGGCATCACTTTG 59.187 50.000 32.87 16.96 0.00 2.77
35 36 2.292267 CTATTCTGCCGGCATCACTTT 58.708 47.619 32.87 14.12 0.00 2.66
36 37 1.475751 CCTATTCTGCCGGCATCACTT 60.476 52.381 32.87 15.59 0.00 3.16
37 38 0.107456 CCTATTCTGCCGGCATCACT 59.893 55.000 32.87 17.28 0.00 3.41
38 39 0.106708 TCCTATTCTGCCGGCATCAC 59.893 55.000 32.87 0.00 0.00 3.06
39 40 0.394192 CTCCTATTCTGCCGGCATCA 59.606 55.000 32.87 20.36 0.00 3.07
40 41 0.952984 GCTCCTATTCTGCCGGCATC 60.953 60.000 32.87 0.00 0.00 3.91
41 42 1.072159 GCTCCTATTCTGCCGGCAT 59.928 57.895 32.87 18.91 0.00 4.40
42 43 2.366393 TGCTCCTATTCTGCCGGCA 61.366 57.895 30.59 30.59 0.00 5.69
43 44 1.889573 GTGCTCCTATTCTGCCGGC 60.890 63.158 22.73 22.73 0.00 6.13
44 45 0.179000 AAGTGCTCCTATTCTGCCGG 59.821 55.000 0.00 0.00 0.00 6.13
45 46 1.293924 CAAGTGCTCCTATTCTGCCG 58.706 55.000 0.00 0.00 0.00 5.69
46 47 1.673168 CCAAGTGCTCCTATTCTGCC 58.327 55.000 0.00 0.00 0.00 4.85
47 48 1.020437 GCCAAGTGCTCCTATTCTGC 58.980 55.000 0.00 0.00 36.87 4.26
58 59 0.104671 TTTTGAGCCAAGCCAAGTGC 59.895 50.000 0.00 0.00 41.71 4.40
59 60 2.803956 CAATTTTGAGCCAAGCCAAGTG 59.196 45.455 0.00 0.00 0.00 3.16
60 61 2.224354 CCAATTTTGAGCCAAGCCAAGT 60.224 45.455 0.00 0.00 0.00 3.16
61 62 2.037511 TCCAATTTTGAGCCAAGCCAAG 59.962 45.455 0.00 0.00 0.00 3.61
62 63 2.045524 TCCAATTTTGAGCCAAGCCAA 58.954 42.857 0.00 0.00 0.00 4.52
63 64 1.714541 TCCAATTTTGAGCCAAGCCA 58.285 45.000 0.00 0.00 0.00 4.75
64 65 2.837532 TTCCAATTTTGAGCCAAGCC 57.162 45.000 0.00 0.00 0.00 4.35
65 66 3.929094 TCATTCCAATTTTGAGCCAAGC 58.071 40.909 0.00 0.00 0.00 4.01
66 67 5.395682 TCTCATTCCAATTTTGAGCCAAG 57.604 39.130 0.00 0.00 37.41 3.61
67 68 5.105228 GGATCTCATTCCAATTTTGAGCCAA 60.105 40.000 0.00 0.00 37.41 4.52
68 69 4.403432 GGATCTCATTCCAATTTTGAGCCA 59.597 41.667 0.00 0.00 37.41 4.75
69 70 4.648307 AGGATCTCATTCCAATTTTGAGCC 59.352 41.667 0.00 0.00 38.32 4.70
70 71 5.126707 ACAGGATCTCATTCCAATTTTGAGC 59.873 40.000 0.00 0.00 38.32 4.26
71 72 6.770746 ACAGGATCTCATTCCAATTTTGAG 57.229 37.500 0.00 0.00 38.32 3.02
72 73 7.543359 AAACAGGATCTCATTCCAATTTTGA 57.457 32.000 0.00 0.00 38.32 2.69
73 74 9.880157 ATTAAACAGGATCTCATTCCAATTTTG 57.120 29.630 0.00 0.00 38.32 2.44
77 78 9.927081 ACTAATTAAACAGGATCTCATTCCAAT 57.073 29.630 0.00 0.00 38.32 3.16
78 79 9.177608 CACTAATTAAACAGGATCTCATTCCAA 57.822 33.333 0.00 0.00 38.32 3.53
79 80 7.775093 CCACTAATTAAACAGGATCTCATTCCA 59.225 37.037 0.00 0.00 38.32 3.53
80 81 7.229506 CCCACTAATTAAACAGGATCTCATTCC 59.770 40.741 0.00 0.00 35.90 3.01
81 82 7.255277 GCCCACTAATTAAACAGGATCTCATTC 60.255 40.741 0.00 0.00 0.00 2.67
82 83 6.547510 GCCCACTAATTAAACAGGATCTCATT 59.452 38.462 0.00 0.00 0.00 2.57
83 84 6.064717 GCCCACTAATTAAACAGGATCTCAT 58.935 40.000 0.00 0.00 0.00 2.90
84 85 5.191722 AGCCCACTAATTAAACAGGATCTCA 59.808 40.000 0.00 0.00 0.00 3.27
85 86 5.685728 AGCCCACTAATTAAACAGGATCTC 58.314 41.667 0.00 0.00 0.00 2.75
86 87 5.717119 AGCCCACTAATTAAACAGGATCT 57.283 39.130 0.00 0.00 0.00 2.75
87 88 5.998363 CCTAGCCCACTAATTAAACAGGATC 59.002 44.000 0.00 0.00 0.00 3.36
88 89 5.690364 GCCTAGCCCACTAATTAAACAGGAT 60.690 44.000 0.00 0.00 0.00 3.24
89 90 4.384868 GCCTAGCCCACTAATTAAACAGGA 60.385 45.833 0.00 0.00 0.00 3.86
90 91 3.883489 GCCTAGCCCACTAATTAAACAGG 59.117 47.826 0.00 0.00 0.00 4.00
91 92 3.883489 GGCCTAGCCCACTAATTAAACAG 59.117 47.826 0.00 0.00 44.06 3.16
92 93 3.893521 GGCCTAGCCCACTAATTAAACA 58.106 45.455 0.00 0.00 44.06 2.83
153 154 3.430929 CCTTAGTCAGTGATTTCGAGGGG 60.431 52.174 0.00 0.00 0.00 4.79
155 156 4.677584 CTCCTTAGTCAGTGATTTCGAGG 58.322 47.826 0.00 1.40 0.00 4.63
157 158 3.764434 AGCTCCTTAGTCAGTGATTTCGA 59.236 43.478 0.00 0.00 0.00 3.71
170 171 5.028549 TGGATTAGAAAGCAGCTCCTTAG 57.971 43.478 0.00 0.00 0.00 2.18
174 175 1.946081 GCTGGATTAGAAAGCAGCTCC 59.054 52.381 0.00 0.00 36.91 4.70
175 176 1.946081 GGCTGGATTAGAAAGCAGCTC 59.054 52.381 0.00 0.00 38.73 4.09
185 186 1.115467 ACGGTGAGAGGCTGGATTAG 58.885 55.000 0.00 0.00 0.00 1.73
186 187 2.447408 TACGGTGAGAGGCTGGATTA 57.553 50.000 0.00 0.00 0.00 1.75
190 191 0.757188 AGGATACGGTGAGAGGCTGG 60.757 60.000 0.00 0.00 46.39 4.85
206 207 2.237143 CACACCCTGAATAGCAAGAGGA 59.763 50.000 0.00 0.00 0.00 3.71
234 235 1.982958 GACCCTAAGGAAACCCAGTGA 59.017 52.381 0.00 0.00 36.73 3.41
236 237 2.435203 AGACCCTAAGGAAACCCAGT 57.565 50.000 0.00 0.00 36.73 4.00
239 240 2.843081 AGGTAGACCCTAAGGAAACCC 58.157 52.381 0.00 0.00 43.87 4.11
245 246 4.100189 CAGATGACAAGGTAGACCCTAAGG 59.900 50.000 0.00 0.00 45.47 2.69
246 247 4.956700 TCAGATGACAAGGTAGACCCTAAG 59.043 45.833 0.00 0.00 45.47 2.18
250 251 2.159226 CGTCAGATGACAAGGTAGACCC 60.159 54.545 13.09 0.00 44.99 4.46
252 253 4.602995 GATCGTCAGATGACAAGGTAGAC 58.397 47.826 13.09 0.00 44.99 2.59
257 258 1.203928 GCGATCGTCAGATGACAAGG 58.796 55.000 17.81 0.00 44.99 3.61
291 292 1.091771 CGGCGAGGAGGTACGAAGTA 61.092 60.000 0.00 0.00 45.11 2.24
293 294 2.408022 CGGCGAGGAGGTACGAAG 59.592 66.667 0.00 0.00 0.00 3.79
295 296 4.100084 TCCGGCGAGGAGGTACGA 62.100 66.667 9.30 0.00 45.98 3.43
303 304 3.462199 GAGGGGAATTCCGGCGAGG 62.462 68.421 18.30 0.00 42.97 4.63
304 305 2.109181 GAGGGGAATTCCGGCGAG 59.891 66.667 18.30 0.00 36.71 5.03
305 306 2.685743 TGAGGGGAATTCCGGCGA 60.686 61.111 18.30 0.00 36.71 5.54
306 307 2.203070 CTGAGGGGAATTCCGGCG 60.203 66.667 18.30 0.00 36.71 6.46
307 308 2.517166 GCTGAGGGGAATTCCGGC 60.517 66.667 18.30 12.51 36.71 6.13
308 309 1.153086 CTGCTGAGGGGAATTCCGG 60.153 63.158 18.30 0.00 36.71 5.14
309 310 0.745845 CACTGCTGAGGGGAATTCCG 60.746 60.000 18.30 5.22 36.71 4.30
310 311 3.181526 CACTGCTGAGGGGAATTCC 57.818 57.895 16.74 16.74 0.00 3.01
316 317 4.421515 CTGCCCACTGCTGAGGGG 62.422 72.222 24.00 20.15 43.25 4.79
317 318 3.618780 GACTGCCCACTGCTGAGGG 62.619 68.421 19.78 19.78 45.42 4.30
318 319 2.046507 GACTGCCCACTGCTGAGG 60.047 66.667 0.00 0.00 41.11 3.86
319 320 2.046507 GGACTGCCCACTGCTGAG 60.047 66.667 0.00 0.00 41.11 3.35
320 321 2.527624 AGGACTGCCCACTGCTGA 60.528 61.111 0.00 0.00 41.11 4.26
321 322 2.046507 GAGGACTGCCCACTGCTG 60.047 66.667 0.00 0.00 43.93 4.41
322 323 2.203907 AGAGGACTGCCCACTGCT 60.204 61.111 0.00 0.00 42.00 4.24
325 326 2.254152 TATTGAGAGGACTGCCCACT 57.746 50.000 0.00 0.00 38.64 4.00
327 328 1.688735 CGATATTGAGAGGACTGCCCA 59.311 52.381 0.00 0.00 37.41 5.36
331 332 5.255710 ACTTGACGATATTGAGAGGACTG 57.744 43.478 0.00 0.00 0.00 3.51
336 337 6.017933 GCAAACAACTTGACGATATTGAGAG 58.982 40.000 0.00 0.00 37.17 3.20
345 346 2.730715 GCAAGTGCAAACAACTTGACGA 60.731 45.455 17.93 0.00 42.29 4.20
392 393 1.899142 GCCTAGATCAGACCTCCCATC 59.101 57.143 0.00 0.00 0.00 3.51
393 394 1.825242 CGCCTAGATCAGACCTCCCAT 60.825 57.143 0.00 0.00 0.00 4.00
394 395 0.468214 CGCCTAGATCAGACCTCCCA 60.468 60.000 0.00 0.00 0.00 4.37
395 396 1.182385 CCGCCTAGATCAGACCTCCC 61.182 65.000 0.00 0.00 0.00 4.30
396 397 0.178987 TCCGCCTAGATCAGACCTCC 60.179 60.000 0.00 0.00 0.00 4.30
397 398 1.202830 TCTCCGCCTAGATCAGACCTC 60.203 57.143 0.00 0.00 0.00 3.85
400 401 1.543802 CCATCTCCGCCTAGATCAGAC 59.456 57.143 0.00 0.00 33.87 3.51
401 402 1.548809 CCCATCTCCGCCTAGATCAGA 60.549 57.143 0.00 0.00 33.87 3.27
402 403 0.894141 CCCATCTCCGCCTAGATCAG 59.106 60.000 0.00 0.00 33.87 2.90
403 404 0.542938 CCCCATCTCCGCCTAGATCA 60.543 60.000 0.00 0.00 33.87 2.92
404 405 1.261238 CCCCCATCTCCGCCTAGATC 61.261 65.000 0.00 0.00 33.87 2.75
405 406 1.229336 CCCCCATCTCCGCCTAGAT 60.229 63.158 0.00 0.00 36.64 1.98
406 407 1.365894 TACCCCCATCTCCGCCTAGA 61.366 60.000 0.00 0.00 0.00 2.43
407 408 0.900647 CTACCCCCATCTCCGCCTAG 60.901 65.000 0.00 0.00 0.00 3.02
408 409 1.155390 CTACCCCCATCTCCGCCTA 59.845 63.158 0.00 0.00 0.00 3.93
409 410 2.122813 CTACCCCCATCTCCGCCT 60.123 66.667 0.00 0.00 0.00 5.52
410 411 3.242291 CCTACCCCCATCTCCGCC 61.242 72.222 0.00 0.00 0.00 6.13
411 412 3.242291 CCCTACCCCCATCTCCGC 61.242 72.222 0.00 0.00 0.00 5.54
412 413 0.473886 ATTCCCTACCCCCATCTCCG 60.474 60.000 0.00 0.00 0.00 4.63
413 414 1.068121 CATTCCCTACCCCCATCTCC 58.932 60.000 0.00 0.00 0.00 3.71
414 415 1.821088 ACATTCCCTACCCCCATCTC 58.179 55.000 0.00 0.00 0.00 2.75
415 416 2.244769 CAAACATTCCCTACCCCCATCT 59.755 50.000 0.00 0.00 0.00 2.90
416 417 2.243736 TCAAACATTCCCTACCCCCATC 59.756 50.000 0.00 0.00 0.00 3.51
417 418 2.244769 CTCAAACATTCCCTACCCCCAT 59.755 50.000 0.00 0.00 0.00 4.00
418 419 1.638589 CTCAAACATTCCCTACCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
419 420 1.639108 ACTCAAACATTCCCTACCCCC 59.361 52.381 0.00 0.00 0.00 5.40
431 432 5.931294 TGGTGTTAGGATACAACTCAAACA 58.069 37.500 0.00 0.00 36.67 2.83
435 436 4.591498 ACACTGGTGTTAGGATACAACTCA 59.409 41.667 0.01 0.00 41.83 3.41
436 437 5.148651 ACACTGGTGTTAGGATACAACTC 57.851 43.478 0.01 0.00 41.83 3.01
437 438 5.046807 GGTACACTGGTGTTAGGATACAACT 60.047 44.000 11.69 0.00 41.83 3.16
448 449 3.105283 GGATAGAGGGTACACTGGTGTT 58.895 50.000 0.00 0.00 41.83 3.32
450 451 2.959707 GAGGATAGAGGGTACACTGGTG 59.040 54.545 0.00 0.00 0.00 4.17
453 454 4.474394 TGATGAGGATAGAGGGTACACTG 58.526 47.826 0.00 0.00 0.00 3.66
462 463 5.875910 GCAAGAATGGATGATGAGGATAGAG 59.124 44.000 0.00 0.00 0.00 2.43
527 534 5.733373 GCAAAGTTTCGAGTCCAAATGTTCT 60.733 40.000 0.00 0.00 0.00 3.01
528 535 4.441087 GCAAAGTTTCGAGTCCAAATGTTC 59.559 41.667 0.00 0.00 0.00 3.18
531 538 3.963665 TGCAAAGTTTCGAGTCCAAATG 58.036 40.909 0.00 0.00 0.00 2.32
532 539 4.853924 ATGCAAAGTTTCGAGTCCAAAT 57.146 36.364 0.00 0.00 0.00 2.32
533 540 5.471797 TGATATGCAAAGTTTCGAGTCCAAA 59.528 36.000 0.00 0.00 0.00 3.28
536 543 5.106712 TGTTGATATGCAAAGTTTCGAGTCC 60.107 40.000 0.00 0.00 38.44 3.85
537 544 5.927030 TGTTGATATGCAAAGTTTCGAGTC 58.073 37.500 0.00 0.00 38.44 3.36
553 561 7.823799 ACATGATGTACTTGTGTGATGTTGATA 59.176 33.333 0.00 0.00 35.92 2.15
721 2709 5.293814 CAGACATGTGGCAAACAATTCAAAA 59.706 36.000 1.15 0.00 43.61 2.44
726 2727 3.384146 TGACAGACATGTGGCAAACAATT 59.616 39.130 1.15 0.00 43.61 2.32
731 2732 2.346766 AGTGACAGACATGTGGCAAA 57.653 45.000 1.15 0.00 37.15 3.68
734 2735 1.532868 GACAAGTGACAGACATGTGGC 59.467 52.381 1.15 0.00 40.68 5.01
735 2736 3.117491 AGACAAGTGACAGACATGTGG 57.883 47.619 1.15 0.00 40.68 4.17
743 2744 9.516314 TGATATAAAACGATAGACAAGTGACAG 57.484 33.333 0.00 0.00 41.38 3.51
758 2759 9.619316 TGACCATGAAACTTTTGATATAAAACG 57.381 29.630 0.00 0.00 0.00 3.60
768 2769 7.065563 TCCAAACATTTGACCATGAAACTTTTG 59.934 33.333 5.91 1.29 40.55 2.44
773 2774 6.279882 TCTTCCAAACATTTGACCATGAAAC 58.720 36.000 5.91 0.00 40.55 2.78
777 2778 5.175491 CGTTTCTTCCAAACATTTGACCATG 59.825 40.000 5.91 0.00 40.55 3.66
779 2780 4.399618 TCGTTTCTTCCAAACATTTGACCA 59.600 37.500 5.91 0.00 40.55 4.02
782 2783 7.815068 TCTTTTTCGTTTCTTCCAAACATTTGA 59.185 29.630 5.91 0.00 40.55 2.69
842 2851 7.099764 CACACTATCTAGACCATTCAGTTTGT 58.900 38.462 0.00 0.00 0.00 2.83
856 2865 3.823873 AGAATCGCCTCCACACTATCTAG 59.176 47.826 0.00 0.00 0.00 2.43
867 2876 1.291132 GCAACTACAGAATCGCCTCC 58.709 55.000 0.00 0.00 0.00 4.30
901 2910 2.203625 GGGCCAAGGCAAGTCCAA 60.204 61.111 13.87 0.00 44.11 3.53
916 2932 0.535553 TTTCCCTTGAAACGTCCGGG 60.536 55.000 0.00 0.00 35.58 5.73
919 2935 4.357142 GTTTTCTTTCCCTTGAAACGTCC 58.643 43.478 0.00 0.00 35.58 4.79
931 2947 5.752892 AAAAGGACTCTCGTTTTCTTTCC 57.247 39.130 0.00 0.00 39.39 3.13
936 2952 5.680893 CAGCTAAAAAGGACTCTCGTTTTC 58.319 41.667 3.79 0.00 41.72 2.29
937 2953 4.023963 GCAGCTAAAAAGGACTCTCGTTTT 60.024 41.667 0.00 0.00 43.60 2.43
938 2954 3.498777 GCAGCTAAAAAGGACTCTCGTTT 59.501 43.478 0.00 0.00 36.19 3.60
939 2955 3.067833 GCAGCTAAAAAGGACTCTCGTT 58.932 45.455 0.00 0.00 0.00 3.85
940 2956 2.613223 GGCAGCTAAAAAGGACTCTCGT 60.613 50.000 0.00 0.00 0.00 4.18
941 2957 2.003301 GGCAGCTAAAAAGGACTCTCG 58.997 52.381 0.00 0.00 0.00 4.04
942 2958 2.003301 CGGCAGCTAAAAAGGACTCTC 58.997 52.381 0.00 0.00 0.00 3.20
943 2959 1.946283 GCGGCAGCTAAAAAGGACTCT 60.946 52.381 0.00 0.00 41.01 3.24
957 2973 1.512926 GTCTTATATGGTGGCGGCAG 58.487 55.000 13.91 0.00 0.00 4.85
965 2981 5.424252 TGACTCCTTTTCCGTCTTATATGGT 59.576 40.000 0.00 0.00 35.53 3.55
966 2982 5.914033 TGACTCCTTTTCCGTCTTATATGG 58.086 41.667 0.00 0.00 35.30 2.74
967 2983 6.806751 TCTGACTCCTTTTCCGTCTTATATG 58.193 40.000 0.00 0.00 0.00 1.78
968 2984 7.419711 TTCTGACTCCTTTTCCGTCTTATAT 57.580 36.000 0.00 0.00 0.00 0.86
969 2985 6.845758 TTCTGACTCCTTTTCCGTCTTATA 57.154 37.500 0.00 0.00 0.00 0.98
970 2986 5.740290 TTCTGACTCCTTTTCCGTCTTAT 57.260 39.130 0.00 0.00 0.00 1.73
971 2987 5.740290 ATTCTGACTCCTTTTCCGTCTTA 57.260 39.130 0.00 0.00 0.00 2.10
974 2990 3.685272 GGAATTCTGACTCCTTTTCCGTC 59.315 47.826 5.23 0.00 0.00 4.79
976 2992 3.674997 TGGAATTCTGACTCCTTTTCCG 58.325 45.455 5.23 0.00 36.30 4.30
977 2993 4.827284 TGTTGGAATTCTGACTCCTTTTCC 59.173 41.667 5.23 0.00 34.54 3.13
978 2994 6.385033 CATGTTGGAATTCTGACTCCTTTTC 58.615 40.000 5.23 0.00 32.51 2.29
979 2995 5.244626 CCATGTTGGAATTCTGACTCCTTTT 59.755 40.000 5.23 0.00 40.96 2.27
980 2996 4.768968 CCATGTTGGAATTCTGACTCCTTT 59.231 41.667 5.23 0.00 40.96 3.11
981 2997 4.338879 CCATGTTGGAATTCTGACTCCTT 58.661 43.478 5.23 0.00 40.96 3.36
982 2998 3.875369 GCCATGTTGGAATTCTGACTCCT 60.875 47.826 5.23 0.00 40.96 3.69
983 2999 2.424956 GCCATGTTGGAATTCTGACTCC 59.575 50.000 5.23 0.00 40.96 3.85
996 3012 3.443045 GTGGAGGCCGCCATGTTG 61.443 66.667 32.07 0.00 40.68 3.33
1027 3043 2.989824 CTCCAGGTGGTCGGTCGT 60.990 66.667 0.00 0.00 36.34 4.34
1030 3046 4.640690 AGGCTCCAGGTGGTCGGT 62.641 66.667 0.00 0.00 36.34 4.69
1443 3474 3.725459 TCGTTGCGCGGTCGTAGA 61.725 61.111 8.83 0.98 41.72 2.59
1449 3480 4.980805 ATGGTGTCGTTGCGCGGT 62.981 61.111 8.83 0.00 41.72 5.68
1506 3537 1.084370 CCCGGAAGAATGAGTGCGTC 61.084 60.000 0.73 0.00 0.00 5.19
1509 3540 0.537188 TCTCCCGGAAGAATGAGTGC 59.463 55.000 0.73 0.00 0.00 4.40
1515 3546 0.695803 AGCCCATCTCCCGGAAGAAT 60.696 55.000 0.73 0.00 0.00 2.40
1590 3621 1.072331 AGTGTGGTCACCTGGAACATC 59.928 52.381 0.00 0.00 46.91 3.06
1605 3636 2.263741 GGCCTGGCTGAACAGTGTG 61.264 63.158 19.68 0.00 36.75 3.82
1673 3704 1.070445 CCATCATCCTCGTCCTGGC 59.930 63.158 0.00 0.00 0.00 4.85
1677 3708 0.744874 TTCGACCATCATCCTCGTCC 59.255 55.000 0.00 0.00 0.00 4.79
1680 3711 1.135139 ACAGTTCGACCATCATCCTCG 59.865 52.381 0.00 0.00 0.00 4.63
1682 3713 2.969628 GACAGTTCGACCATCATCCT 57.030 50.000 0.00 0.00 0.00 3.24
1693 3724 1.328439 CTCTCGAAACCGACAGTTCG 58.672 55.000 0.00 0.00 45.44 3.95
1713 3753 1.873903 GCCTGACGCTTGAAGAAGTCA 60.874 52.381 18.10 18.10 40.77 3.41
1818 3858 3.470567 GTGTGCGAGTTCTCGGCG 61.471 66.667 20.97 0.00 0.00 6.46
1864 3904 4.031719 CGCGATCTCCGGCTCGAT 62.032 66.667 20.41 11.61 37.05 3.59
1902 3942 5.178797 AGGAGGACGTTGTTGATTGATTAG 58.821 41.667 0.00 0.00 0.00 1.73
1904 3944 4.003648 GAGGAGGACGTTGTTGATTGATT 58.996 43.478 0.00 0.00 0.00 2.57
1905 3945 3.261897 AGAGGAGGACGTTGTTGATTGAT 59.738 43.478 0.00 0.00 0.00 2.57
1906 3946 2.632996 AGAGGAGGACGTTGTTGATTGA 59.367 45.455 0.00 0.00 0.00 2.57
1907 3947 2.738846 CAGAGGAGGACGTTGTTGATTG 59.261 50.000 0.00 0.00 0.00 2.67
1908 3948 2.368875 ACAGAGGAGGACGTTGTTGATT 59.631 45.455 0.00 0.00 0.00 2.57
1909 3949 1.971357 ACAGAGGAGGACGTTGTTGAT 59.029 47.619 0.00 0.00 0.00 2.57
1910 3950 1.410004 ACAGAGGAGGACGTTGTTGA 58.590 50.000 0.00 0.00 0.00 3.18
1914 3954 2.492088 TGATGTACAGAGGAGGACGTTG 59.508 50.000 0.33 0.00 0.00 4.10
1915 3955 2.803956 TGATGTACAGAGGAGGACGTT 58.196 47.619 0.33 0.00 0.00 3.99
1916 3956 2.509166 TGATGTACAGAGGAGGACGT 57.491 50.000 0.33 0.00 0.00 4.34
1917 3957 4.115516 CAAATGATGTACAGAGGAGGACG 58.884 47.826 0.33 0.00 0.00 4.79
1918 3958 5.105146 ACTCAAATGATGTACAGAGGAGGAC 60.105 44.000 0.33 0.00 31.51 3.85
1921 3961 5.970592 TCACTCAAATGATGTACAGAGGAG 58.029 41.667 0.33 5.15 0.00 3.69
1922 3962 6.550938 ATCACTCAAATGATGTACAGAGGA 57.449 37.500 0.33 2.21 37.93 3.71
1946 3986 3.060602 GTGACAGAGTTCAGCTGGTAAC 58.939 50.000 15.13 11.98 37.69 2.50
1947 3987 2.288213 CGTGACAGAGTTCAGCTGGTAA 60.288 50.000 15.13 0.00 37.69 2.85
1948 3988 1.269723 CGTGACAGAGTTCAGCTGGTA 59.730 52.381 15.13 0.00 37.69 3.25
1949 3989 0.032678 CGTGACAGAGTTCAGCTGGT 59.967 55.000 15.13 1.75 37.69 4.00
1951 3991 2.706555 TACGTGACAGAGTTCAGCTG 57.293 50.000 7.63 7.63 39.26 4.24
1952 3992 5.589050 TGTATATACGTGACAGAGTTCAGCT 59.411 40.000 8.33 0.00 0.00 4.24
1961 4032 8.893727 TCATGATATCCTGTATATACGTGACAG 58.106 37.037 8.33 6.54 40.26 3.51
2080 4151 1.226407 CGAGACGCTCAATCGCAGA 60.226 57.895 7.47 0.00 45.75 4.26
2097 4168 1.903929 CGTCGATGAAACGAGCTCG 59.096 57.895 33.45 33.45 42.62 5.03
2103 4174 0.246757 CGAAAGGCGTCGATGAAACG 60.247 55.000 9.31 0.00 43.86 3.60
2133 4204 3.119849 GCATTTCGACAGCCTTTGTGTAT 60.120 43.478 0.00 0.00 41.05 2.29
2136 4207 1.267806 AGCATTTCGACAGCCTTTGTG 59.732 47.619 0.00 0.00 41.05 3.33
2139 4210 1.537202 GTCAGCATTTCGACAGCCTTT 59.463 47.619 0.00 0.00 32.24 3.11
2148 4219 1.699656 CTGAGCCCGTCAGCATTTCG 61.700 60.000 0.00 0.00 46.41 3.46
2159 4230 3.315142 TTGCTACCAGCTGAGCCCG 62.315 63.158 21.08 5.27 42.97 6.13
2190 4261 3.449746 TCGATTCCCCATTCAACCTTT 57.550 42.857 0.00 0.00 0.00 3.11
2193 4264 4.261614 GCTAAATCGATTCCCCATTCAACC 60.262 45.833 11.83 0.00 0.00 3.77
2220 4291 7.966812 ACAATTATACATACCTCTCATGCTCA 58.033 34.615 0.00 0.00 0.00 4.26
2252 4323 5.760253 AGTGCCAATAACTGTATCTGCATAC 59.240 40.000 0.00 0.00 36.18 2.39
2254 4325 4.577693 CAGTGCCAATAACTGTATCTGCAT 59.422 41.667 0.00 0.00 40.17 3.96
2270 4341 8.347004 TGAAAATAACAGAAATATCAGTGCCA 57.653 30.769 0.00 0.00 0.00 4.92
2271 4342 9.241317 CATGAAAATAACAGAAATATCAGTGCC 57.759 33.333 0.00 0.00 0.00 5.01
2299 4370 6.164176 ACAACAACCCAAACAACGATAAAAA 58.836 32.000 0.00 0.00 0.00 1.94
2300 4371 5.721232 ACAACAACCCAAACAACGATAAAA 58.279 33.333 0.00 0.00 0.00 1.52
2301 4372 5.326200 ACAACAACCCAAACAACGATAAA 57.674 34.783 0.00 0.00 0.00 1.40
2302 4373 4.985538 ACAACAACCCAAACAACGATAA 57.014 36.364 0.00 0.00 0.00 1.75
2303 4374 4.158025 ACAACAACAACCCAAACAACGATA 59.842 37.500 0.00 0.00 0.00 2.92
2304 4375 3.056465 ACAACAACAACCCAAACAACGAT 60.056 39.130 0.00 0.00 0.00 3.73
2305 4376 2.296471 ACAACAACAACCCAAACAACGA 59.704 40.909 0.00 0.00 0.00 3.85
2306 4377 2.410053 CACAACAACAACCCAAACAACG 59.590 45.455 0.00 0.00 0.00 4.10
2319 4390 5.107875 GCAAGAAATTCGGAATCACAACAAC 60.108 40.000 3.28 0.00 0.00 3.32
2324 4395 3.567585 TGTGCAAGAAATTCGGAATCACA 59.432 39.130 13.48 13.48 0.00 3.58
2332 4403 3.558505 CTTCAGGTGTGCAAGAAATTCG 58.441 45.455 0.00 0.00 0.00 3.34
2375 4446 8.556213 AGTTATAAACGATGACAGGCTTTTTA 57.444 30.769 0.00 0.00 36.23 1.52
2378 4449 6.537660 GGTAGTTATAAACGATGACAGGCTTT 59.462 38.462 0.00 0.00 36.23 3.51
2390 4461 2.388121 CCTCGCGGGTAGTTATAAACG 58.612 52.381 4.71 0.00 36.23 3.60
2420 4491 6.428159 GGTCATCGTTGAGCCTCATATAAAAT 59.572 38.462 13.47 0.00 43.15 1.82
2453 4524 1.996786 GAACATCCATGGCAGCCACG 61.997 60.000 19.10 8.95 35.80 4.94
2462 4533 4.202441 CCTTGGGAACTAGAACATCCATG 58.798 47.826 0.00 0.00 34.95 3.66
2474 4545 5.800653 ACTCCCTTATATACCTTGGGAACT 58.199 41.667 11.07 1.29 45.22 3.01
2556 4630 9.066892 GCCACATCAAAGATCAATTAAGGTATA 57.933 33.333 0.00 0.00 0.00 1.47
2566 4640 5.771666 AGAGAAAAGCCACATCAAAGATCAA 59.228 36.000 0.00 0.00 0.00 2.57
2571 4645 4.082895 CCTGAGAGAAAAGCCACATCAAAG 60.083 45.833 0.00 0.00 0.00 2.77
2572 4646 3.822735 CCTGAGAGAAAAGCCACATCAAA 59.177 43.478 0.00 0.00 0.00 2.69
2574 4648 2.373169 ACCTGAGAGAAAAGCCACATCA 59.627 45.455 0.00 0.00 0.00 3.07
2583 4657 5.445069 TCAATTCACCAACCTGAGAGAAAA 58.555 37.500 0.00 0.00 0.00 2.29
2585 4659 4.705110 TCAATTCACCAACCTGAGAGAA 57.295 40.909 0.00 0.00 0.00 2.87
2586 4660 4.916041 ATCAATTCACCAACCTGAGAGA 57.084 40.909 0.00 0.00 0.00 3.10
2614 4688 2.355193 GCGCTCCTCCCTCTGACTT 61.355 63.158 0.00 0.00 0.00 3.01
2637 4711 5.121105 GCTGGTACCGTTGTTTAAGGATAT 58.879 41.667 7.57 0.00 0.00 1.63
2659 4733 7.589574 TTTTTCCAAATATAAGAAAAGGCGC 57.410 32.000 0.00 0.00 39.78 6.53
2693 4767 7.504238 AGACATGGATTGGTTGTTACAAAGTAA 59.496 33.333 0.00 0.00 0.00 2.24
2694 4768 7.001674 AGACATGGATTGGTTGTTACAAAGTA 58.998 34.615 0.00 0.00 0.00 2.24
2730 4827 5.920273 CACCACAAGTGCCTTAATTTTGTAG 59.080 40.000 0.00 0.00 40.28 2.74
2735 4832 3.320826 GTCCACCACAAGTGCCTTAATTT 59.679 43.478 0.00 0.00 45.83 1.82
2780 4877 1.693627 ACCTGCGTCCAGTATCCTAG 58.306 55.000 0.00 0.00 37.38 3.02
2805 4902 8.401894 TCCAGATAGAACTCATAGGATTCCATA 58.598 37.037 5.29 0.00 0.00 2.74
2810 4907 6.629156 AGGTCCAGATAGAACTCATAGGATT 58.371 40.000 0.00 0.00 0.00 3.01
2874 4971 3.455737 GAGCATCCTCTCTAGGCCT 57.544 57.895 11.78 11.78 43.31 5.19
2904 5001 0.247460 CTCTGATGTTGTCGAGGCCA 59.753 55.000 5.01 0.00 0.00 5.36
2910 5007 3.801050 GGATGACATCTCTGATGTTGTCG 59.199 47.826 14.95 0.00 41.02 4.35
2940 5037 1.759459 CGGCCTTCCCAGGGTATCTC 61.759 65.000 5.01 0.00 41.21 2.75
2943 5040 2.070650 GTCGGCCTTCCCAGGGTAT 61.071 63.158 5.01 0.00 41.21 2.73
2964 5061 3.715315 TCAGAGGCCAATCAGATCTTCAT 59.285 43.478 5.01 0.00 0.00 2.57
2984 5081 3.253188 GGACAACTTGTGCTATTGCTTCA 59.747 43.478 6.19 0.00 35.71 3.02
2985 5082 3.253188 TGGACAACTTGTGCTATTGCTTC 59.747 43.478 13.84 0.00 39.59 3.86
3020 5117 6.013032 CACCTACTACCACTATACCCTAGCTA 60.013 46.154 0.00 0.00 0.00 3.32
3031 5128 7.121382 ACTATGCTTTACACCTACTACCACTA 58.879 38.462 0.00 0.00 0.00 2.74
3039 5136 9.643693 TTTACACTTACTATGCTTTACACCTAC 57.356 33.333 0.00 0.00 0.00 3.18
3066 5163 7.339721 TCCTAGTCTCAGTTATGGACAACTTAG 59.660 40.741 0.00 0.00 36.61 2.18
3081 5183 5.504337 GCACACGTATTACTCCTAGTCTCAG 60.504 48.000 0.00 0.00 0.00 3.35
3095 5197 7.406553 GTCACAAACATATATGCACACGTATT 58.593 34.615 12.79 0.00 30.49 1.89
3103 5205 6.735678 AAAGACGTCACAAACATATATGCA 57.264 33.333 19.50 0.00 0.00 3.96
3143 5250 8.208224 TGACATGAACTCTACCAAAAAGACTAA 58.792 33.333 0.00 0.00 0.00 2.24
3154 5261 8.734386 AGATTCAAATTTGACATGAACTCTACC 58.266 33.333 20.35 0.00 36.83 3.18
3155 5262 9.552114 CAGATTCAAATTTGACATGAACTCTAC 57.448 33.333 20.35 4.16 36.83 2.59
3157 5264 7.088905 GCAGATTCAAATTTGACATGAACTCT 58.911 34.615 20.35 10.46 36.83 3.24
3158 5265 6.864685 TGCAGATTCAAATTTGACATGAACTC 59.135 34.615 20.35 8.66 36.83 3.01
3179 5286 4.872691 GGGACAATCGATCCTTATATGCAG 59.127 45.833 0.00 0.00 36.40 4.41
3182 5289 6.042638 ACTGGGACAATCGATCCTTATATG 57.957 41.667 0.00 0.00 38.70 1.78
3185 5292 4.408921 TCAACTGGGACAATCGATCCTTAT 59.591 41.667 0.00 0.00 38.70 1.73
3190 5297 4.396166 ACAATTCAACTGGGACAATCGATC 59.604 41.667 0.00 0.00 38.70 3.69
3191 5298 4.335416 ACAATTCAACTGGGACAATCGAT 58.665 39.130 0.00 0.00 38.70 3.59
3192 5299 3.750371 ACAATTCAACTGGGACAATCGA 58.250 40.909 0.00 0.00 38.70 3.59
3193 5300 4.229096 CAACAATTCAACTGGGACAATCG 58.771 43.478 0.00 0.00 38.70 3.34
3200 5307 4.916983 TCAGAACAACAATTCAACTGGG 57.083 40.909 0.00 0.00 0.00 4.45
3202 5309 5.342433 TGCTTCAGAACAACAATTCAACTG 58.658 37.500 0.00 0.00 0.00 3.16
3204 5311 7.928908 TTATGCTTCAGAACAACAATTCAAC 57.071 32.000 0.00 0.00 0.00 3.18
3218 5325 5.625311 GGTCTGTTTTTCGTTTATGCTTCAG 59.375 40.000 0.00 0.00 0.00 3.02
3221 5328 5.508200 TGGTCTGTTTTTCGTTTATGCTT 57.492 34.783 0.00 0.00 0.00 3.91
3230 5337 3.120511 GCTAGAAGCTGGTCTGTTTTTCG 60.121 47.826 0.00 0.00 38.45 3.46
3286 5393 0.445436 GACGCACCTGATTTGAGCAG 59.555 55.000 0.00 0.00 0.00 4.24
3289 5396 2.668457 GTGTAGACGCACCTGATTTGAG 59.332 50.000 0.00 0.00 33.53 3.02
3294 5401 1.618837 AGTTGTGTAGACGCACCTGAT 59.381 47.619 0.00 0.00 38.52 2.90
3337 5444 4.586841 ACGCTGGAAGAGAGAAGCTATATT 59.413 41.667 0.00 0.00 37.13 1.28
3379 5486 7.601508 GGCAGATCAAGAGAAACAAATTTGAAT 59.398 33.333 24.64 12.14 32.21 2.57
3386 5493 2.813754 CGGGCAGATCAAGAGAAACAAA 59.186 45.455 0.00 0.00 0.00 2.83
3419 5526 8.774586 TGAACTGTAAGATAAGAGCTTTTGAAC 58.225 33.333 0.00 0.00 37.43 3.18
3420 5527 8.902540 TGAACTGTAAGATAAGAGCTTTTGAA 57.097 30.769 0.00 0.00 37.43 2.69
3475 5583 5.848406 AGAACTGTAAGAGAAGACCACTTG 58.152 41.667 0.00 0.00 37.43 3.16
3476 5584 7.784470 ATAGAACTGTAAGAGAAGACCACTT 57.216 36.000 0.00 0.00 37.43 3.16
3499 5607 9.263538 TGTTGTGTTAGAAATTCTACGTGTAAT 57.736 29.630 1.61 0.00 0.00 1.89
3526 5634 4.284550 TGGTGACAAGGCCTGGCC 62.285 66.667 30.57 30.57 42.72 5.36
3571 5679 9.140286 CTGAGAAGTCGATAACACAAGAATTAA 57.860 33.333 0.00 0.00 0.00 1.40
3573 5681 7.378966 TCTGAGAAGTCGATAACACAAGAATT 58.621 34.615 0.00 0.00 0.00 2.17
3575 5683 6.327279 TCTGAGAAGTCGATAACACAAGAA 57.673 37.500 0.00 0.00 0.00 2.52
3580 5688 3.860536 GGCTTCTGAGAAGTCGATAACAC 59.139 47.826 22.01 3.49 0.00 3.32
3581 5689 3.119101 GGGCTTCTGAGAAGTCGATAACA 60.119 47.826 22.01 0.00 0.00 2.41
3582 5690 3.131400 AGGGCTTCTGAGAAGTCGATAAC 59.869 47.826 22.01 7.84 0.00 1.89
3583 5691 3.366396 AGGGCTTCTGAGAAGTCGATAA 58.634 45.455 22.01 0.00 0.00 1.75
3585 5693 1.859302 AGGGCTTCTGAGAAGTCGAT 58.141 50.000 22.01 10.28 0.00 3.59
3588 5696 2.224402 ACACAAGGGCTTCTGAGAAGTC 60.224 50.000 22.01 20.14 0.00 3.01
3590 5698 2.224378 TGACACAAGGGCTTCTGAGAAG 60.224 50.000 17.59 17.59 0.00 2.85
3591 5699 1.768275 TGACACAAGGGCTTCTGAGAA 59.232 47.619 0.00 0.00 0.00 2.87
3593 5701 1.517242 GTGACACAAGGGCTTCTGAG 58.483 55.000 0.00 0.00 0.00 3.35
3594 5702 0.249868 CGTGACACAAGGGCTTCTGA 60.250 55.000 6.37 0.00 0.00 3.27
3595 5703 0.249868 TCGTGACACAAGGGCTTCTG 60.250 55.000 6.37 0.00 0.00 3.02
3598 5706 1.071471 CCTCGTGACACAAGGGCTT 59.929 57.895 4.49 0.00 0.00 4.35
3599 5707 2.743718 CCTCGTGACACAAGGGCT 59.256 61.111 4.49 0.00 0.00 5.19
3600 5708 3.050275 GCCTCGTGACACAAGGGC 61.050 66.667 14.46 14.59 0.00 5.19
3601 5709 1.961277 GTGCCTCGTGACACAAGGG 60.961 63.158 14.46 9.03 36.77 3.95
3603 5711 0.667487 ATCGTGCCTCGTGACACAAG 60.667 55.000 6.37 0.00 40.80 3.16
3604 5712 0.943835 CATCGTGCCTCGTGACACAA 60.944 55.000 6.37 0.00 40.80 3.33
3605 5713 1.372872 CATCGTGCCTCGTGACACA 60.373 57.895 6.37 0.00 40.80 3.72
3606 5714 2.094659 CCATCGTGCCTCGTGACAC 61.095 63.158 0.00 0.00 40.80 3.67
3607 5715 2.261361 CCATCGTGCCTCGTGACA 59.739 61.111 0.00 0.00 40.80 3.58
3608 5716 1.805945 GTCCATCGTGCCTCGTGAC 60.806 63.158 0.00 2.08 40.80 3.67
3609 5717 2.571757 GTCCATCGTGCCTCGTGA 59.428 61.111 0.00 0.00 40.80 4.35
3610 5718 2.613739 ATCGTCCATCGTGCCTCGTG 62.614 60.000 0.00 0.00 40.80 4.35
3612 5720 1.658717 GATCGTCCATCGTGCCTCG 60.659 63.158 0.00 0.00 40.80 4.63
3613 5721 4.327885 GATCGTCCATCGTGCCTC 57.672 61.111 0.00 0.00 40.80 4.70
3659 5767 0.250234 TCGGAAGCCAACTCATCCTG 59.750 55.000 0.00 0.00 0.00 3.86
3676 5784 2.196749 CGTGATCCTTCCATCAGTTCG 58.803 52.381 0.00 0.00 33.29 3.95
3680 5788 0.877649 CGCCGTGATCCTTCCATCAG 60.878 60.000 0.00 0.00 33.29 2.90
3696 5804 2.592861 CCTGCATCTAAGGGCGCC 60.593 66.667 21.18 21.18 0.00 6.53
3718 5826 5.065988 GGAACAACCATATGACATACACCAC 59.934 44.000 3.65 0.00 38.79 4.16
3752 5860 8.138712 GTGTGTTTATATGTCCTTCTCTAGAGG 58.861 40.741 19.67 5.01 0.00 3.69
3774 5882 6.143496 ACGCGATATCTAGAAACATAGTGTG 58.857 40.000 15.93 0.00 0.00 3.82
3775 5883 6.315091 ACGCGATATCTAGAAACATAGTGT 57.685 37.500 15.93 1.64 0.00 3.55
3776 5884 7.270793 GGTTACGCGATATCTAGAAACATAGTG 59.729 40.741 15.93 1.03 0.00 2.74
3777 5885 7.303998 GGTTACGCGATATCTAGAAACATAGT 58.696 38.462 15.93 0.00 0.00 2.12
3778 5886 6.465149 CGGTTACGCGATATCTAGAAACATAG 59.535 42.308 15.93 0.00 0.00 2.23
3779 5887 6.147656 TCGGTTACGCGATATCTAGAAACATA 59.852 38.462 15.93 0.00 40.69 2.29
3782 5890 4.610536 GTCGGTTACGCGATATCTAGAAAC 59.389 45.833 15.93 2.61 40.69 2.78
3784 5892 4.060900 AGTCGGTTACGCGATATCTAGAA 58.939 43.478 15.93 0.00 40.69 2.10
3785 5893 3.431233 CAGTCGGTTACGCGATATCTAGA 59.569 47.826 15.93 0.00 40.69 2.43
3786 5894 3.186001 ACAGTCGGTTACGCGATATCTAG 59.814 47.826 15.93 0.00 40.69 2.43
3787 5895 3.059393 CACAGTCGGTTACGCGATATCTA 60.059 47.826 15.93 0.00 40.69 1.98
3789 5897 2.041966 CACAGTCGGTTACGCGATATC 58.958 52.381 15.93 0.00 40.69 1.63
3796 5916 2.054687 TTAGCACACAGTCGGTTACG 57.945 50.000 0.00 0.00 42.74 3.18
3802 5922 4.486090 AGTCAGTTATTAGCACACAGTCG 58.514 43.478 0.00 0.00 0.00 4.18
3807 5927 6.866770 TGTGAACTAGTCAGTTATTAGCACAC 59.133 38.462 0.00 0.00 45.18 3.82
3811 5931 8.436200 CAAAGTGTGAACTAGTCAGTTATTAGC 58.564 37.037 0.00 0.00 45.18 3.09
3812 5932 9.477484 ACAAAGTGTGAACTAGTCAGTTATTAG 57.523 33.333 0.00 0.00 45.18 1.73
3818 5938 6.040878 GTGTACAAAGTGTGAACTAGTCAGT 58.959 40.000 0.00 0.00 36.74 3.41
3819 5939 6.273825 AGTGTACAAAGTGTGAACTAGTCAG 58.726 40.000 0.00 0.00 36.74 3.51
3825 5945 6.710597 TCTAGAGTGTACAAAGTGTGAACT 57.289 37.500 0.00 0.00 32.41 3.01
3894 6015 9.774742 GAGTATTTTGTCTAGCAATTAAGTTGG 57.225 33.333 1.30 0.00 38.29 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.