Multiple sequence alignment - TraesCS7D01G027700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G027700 chr7D 100.000 5361 0 0 1 5361 13600339 13605699 0.000000e+00 9901.0
1 TraesCS7D01G027700 chr7D 89.350 1108 109 7 3262 4362 3823490 3824595 0.000000e+00 1384.0
2 TraesCS7D01G027700 chr7D 76.349 1835 350 57 2364 4138 8351356 8353166 0.000000e+00 907.0
3 TraesCS7D01G027700 chr7D 77.860 271 52 8 3859 4125 2544107 2544373 1.550000e-35 161.0
4 TraesCS7D01G027700 chr3D 98.964 4825 43 4 1 4825 585100956 585096139 0.000000e+00 8626.0
5 TraesCS7D01G027700 chr3D 97.588 539 10 3 4826 5361 585095735 585095197 0.000000e+00 920.0
6 TraesCS7D01G027700 chr3D 84.556 259 28 8 638 892 585104784 585104534 4.150000e-61 246.0
7 TraesCS7D01G027700 chr7A 95.105 4474 164 24 557 5011 13090362 13094799 0.000000e+00 6998.0
8 TraesCS7D01G027700 chr7A 88.893 2962 274 19 1195 4138 2809515 2812439 0.000000e+00 3596.0
9 TraesCS7D01G027700 chr7A 89.381 2712 257 15 1670 4362 2077513 2080212 0.000000e+00 3384.0
10 TraesCS7D01G027700 chr7A 90.736 2202 190 10 2172 4362 3268003 3270201 0.000000e+00 2924.0
11 TraesCS7D01G027700 chr7A 90.736 2202 190 10 2172 4362 3293900 3296098 0.000000e+00 2924.0
12 TraesCS7D01G027700 chr7A 79.279 2109 342 53 1340 3409 2700045 2697993 0.000000e+00 1386.0
13 TraesCS7D01G027700 chr7A 79.068 2059 326 62 1422 3456 13236291 13238268 0.000000e+00 1317.0
14 TraesCS7D01G027700 chr7A 85.948 306 32 9 561 861 3259033 3259332 3.120000e-82 316.0
15 TraesCS7D01G027700 chr7A 85.350 314 27 2 1195 1507 2046336 2046631 1.880000e-79 307.0
16 TraesCS7D01G027700 chr7A 85.714 259 29 5 638 892 13086443 13086697 3.180000e-67 267.0
17 TraesCS7D01G027700 chr7A 91.304 138 11 1 57 193 13089712 13089849 2.550000e-43 187.0
18 TraesCS7D01G027700 chr7A 97.059 34 1 0 4825 4858 36015167 36015134 2.090000e-04 58.4
19 TraesCS7D01G027700 chr4A 93.632 3612 192 16 1165 4738 722911134 722907523 0.000000e+00 5361.0
20 TraesCS7D01G027700 chr4A 77.107 2053 363 65 1425 3454 740767212 740765244 0.000000e+00 1088.0
21 TraesCS7D01G027700 chr4A 83.713 878 106 20 1201 2066 741575645 741576497 0.000000e+00 795.0
22 TraesCS7D01G027700 chr4A 91.784 499 24 7 675 1165 722911681 722911192 0.000000e+00 678.0
23 TraesCS7D01G027700 chr4A 90.182 275 22 3 4740 5011 722907558 722907286 2.380000e-93 353.0
24 TraesCS7D01G027700 chr4A 86.641 262 24 8 638 892 722915419 722915162 4.090000e-71 279.0
25 TraesCS7D01G027700 chr4A 85.897 234 27 4 565 794 739812264 739812495 1.490000e-60 244.0
26 TraesCS7D01G027700 chr4A 85.581 215 22 4 957 1165 741575342 741575553 3.250000e-52 217.0
27 TraesCS7D01G027700 chr4A 81.183 186 33 2 4138 4322 740017266 740017082 1.200000e-31 148.0
28 TraesCS7D01G027700 chr4A 89.286 112 6 1 60 171 722911818 722911713 9.370000e-28 135.0
29 TraesCS7D01G027700 chr7B 80.691 1419 254 16 2052 3456 674132372 674133784 0.000000e+00 1085.0
30 TraesCS7D01G027700 chr7B 86.268 284 33 6 5003 5282 192018797 192018516 2.430000e-78 303.0
31 TraesCS7D01G027700 chr7B 92.857 182 11 2 5012 5191 59342419 59342238 4.120000e-66 263.0
32 TraesCS7D01G027700 chr7B 81.073 317 34 15 4998 5304 609171471 609171771 4.180000e-56 230.0
33 TraesCS7D01G027700 chr1D 86.783 628 77 3 1795 2416 4280727 4280100 0.000000e+00 695.0
34 TraesCS7D01G027700 chr1D 81.786 280 44 7 5012 5286 9388139 9387862 1.500000e-55 228.0
35 TraesCS7D01G027700 chr5A 90.935 353 27 5 5012 5361 638815031 638815381 2.260000e-128 470.0
36 TraesCS7D01G027700 chr2B 89.296 355 33 5 5011 5361 581432980 581432627 1.770000e-119 440.0
37 TraesCS7D01G027700 chr2B 94.180 189 6 5 5007 5191 581431797 581431984 3.160000e-72 283.0
38 TraesCS7D01G027700 chr6D 88.732 355 35 5 5011 5361 456405061 456404708 3.840000e-116 429.0
39 TraesCS7D01G027700 chr5B 76.185 949 149 44 1356 2293 21703762 21704644 3.840000e-116 429.0
40 TraesCS7D01G027700 chr5B 88.506 348 30 9 5011 5355 539283100 539283440 3.860000e-111 412.0
41 TraesCS7D01G027700 chr5D 75.895 950 159 41 1356 2293 29582201 29583092 6.420000e-114 422.0
42 TraesCS7D01G027700 chr4D 88.136 354 30 6 5012 5361 413035530 413035875 1.390000e-110 411.0
43 TraesCS7D01G027700 chr1B 84.419 353 30 9 5012 5361 642060429 642060099 1.860000e-84 324.0
44 TraesCS7D01G027700 chr1B 83.178 107 16 2 4770 4875 658729564 658729459 4.420000e-16 97.1
45 TraesCS7D01G027700 chr6B 83.784 259 35 6 638 892 69319971 69320226 6.940000e-59 239.0
46 TraesCS7D01G027700 chrUn 100.000 118 0 0 1 118 476789430 476789547 9.040000e-53 219.0
47 TraesCS7D01G027700 chr3B 93.478 46 3 0 4826 4871 726359737 726359782 9.630000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G027700 chr7D 13600339 13605699 5360 False 9901.0 9901 100.000000 1 5361 1 chr7D.!!$F4 5360
1 TraesCS7D01G027700 chr7D 3823490 3824595 1105 False 1384.0 1384 89.350000 3262 4362 1 chr7D.!!$F2 1100
2 TraesCS7D01G027700 chr7D 8351356 8353166 1810 False 907.0 907 76.349000 2364 4138 1 chr7D.!!$F3 1774
3 TraesCS7D01G027700 chr3D 585095197 585104784 9587 True 3264.0 8626 93.702667 1 5361 3 chr3D.!!$R1 5360
4 TraesCS7D01G027700 chr7A 2809515 2812439 2924 False 3596.0 3596 88.893000 1195 4138 1 chr7A.!!$F3 2943
5 TraesCS7D01G027700 chr7A 2077513 2080212 2699 False 3384.0 3384 89.381000 1670 4362 1 chr7A.!!$F2 2692
6 TraesCS7D01G027700 chr7A 3268003 3270201 2198 False 2924.0 2924 90.736000 2172 4362 1 chr7A.!!$F5 2190
7 TraesCS7D01G027700 chr7A 3293900 3296098 2198 False 2924.0 2924 90.736000 2172 4362 1 chr7A.!!$F6 2190
8 TraesCS7D01G027700 chr7A 13086443 13094799 8356 False 2484.0 6998 90.707667 57 5011 3 chr7A.!!$F8 4954
9 TraesCS7D01G027700 chr7A 2697993 2700045 2052 True 1386.0 1386 79.279000 1340 3409 1 chr7A.!!$R1 2069
10 TraesCS7D01G027700 chr7A 13236291 13238268 1977 False 1317.0 1317 79.068000 1422 3456 1 chr7A.!!$F7 2034
11 TraesCS7D01G027700 chr4A 722907286 722915419 8133 True 1361.2 5361 90.305000 60 5011 5 chr4A.!!$R3 4951
12 TraesCS7D01G027700 chr4A 740765244 740767212 1968 True 1088.0 1088 77.107000 1425 3454 1 chr4A.!!$R2 2029
13 TraesCS7D01G027700 chr4A 741575342 741576497 1155 False 506.0 795 84.647000 957 2066 2 chr4A.!!$F2 1109
14 TraesCS7D01G027700 chr7B 674132372 674133784 1412 False 1085.0 1085 80.691000 2052 3456 1 chr7B.!!$F2 1404
15 TraesCS7D01G027700 chr1D 4280100 4280727 627 True 695.0 695 86.783000 1795 2416 1 chr1D.!!$R1 621
16 TraesCS7D01G027700 chr5B 21703762 21704644 882 False 429.0 429 76.185000 1356 2293 1 chr5B.!!$F1 937
17 TraesCS7D01G027700 chr5D 29582201 29583092 891 False 422.0 422 75.895000 1356 2293 1 chr5D.!!$F1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.298707 CGTGAAGATTGACGATGCCG 59.701 55.000 0.00 0.0 40.22 5.69 F
797 5797 0.601558 AGACTTCTCCGCGCTAACAA 59.398 50.000 5.56 0.0 0.00 2.83 F
798 5798 1.000506 AGACTTCTCCGCGCTAACAAA 59.999 47.619 5.56 0.0 0.00 2.83 F
2244 7401 2.159179 CCCCCACAGGATTTTAAGGG 57.841 55.000 0.00 0.0 38.24 3.95 F
3902 9150 1.004044 AGATTGCTGTGAAGGGACTGG 59.996 52.381 0.00 0.0 40.86 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1198 6296 1.275010 GGAAATGGTTGCCCAAATCGT 59.725 47.619 0.00 0.0 46.04 3.73 R
2504 7704 2.414994 AAGACATGCCCTGACTGATG 57.585 50.000 0.00 0.0 30.04 3.07 R
2778 7981 3.616379 GCTCAGATTCAGTGCTTGTCTAC 59.384 47.826 0.00 0.0 0.00 2.59 R
4177 9431 5.093677 TCTCTAAGGCCTGGCATATAATCA 58.906 41.667 22.05 0.0 0.00 2.57 R
5246 10935 0.326238 GACAGGTGGACCCCCATAGA 60.326 60.000 0.00 0.0 45.68 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.083533 AGCAGTGGAGAAGAAATACAGAG 57.916 43.478 0.00 0.00 0.00 3.35
24 25 4.081198 AGCAGTGGAGAAGAAATACAGAGG 60.081 45.833 0.00 0.00 0.00 3.69
26 27 3.840666 AGTGGAGAAGAAATACAGAGGCA 59.159 43.478 0.00 0.00 0.00 4.75
27 28 4.472833 AGTGGAGAAGAAATACAGAGGCAT 59.527 41.667 0.00 0.00 0.00 4.40
28 29 4.813697 GTGGAGAAGAAATACAGAGGCATC 59.186 45.833 0.00 0.00 0.00 3.91
30 31 5.190528 TGGAGAAGAAATACAGAGGCATCTT 59.809 40.000 0.00 0.00 31.64 2.40
32 33 7.071698 TGGAGAAGAAATACAGAGGCATCTTAT 59.928 37.037 0.00 0.00 31.64 1.73
33 34 7.387397 GGAGAAGAAATACAGAGGCATCTTATG 59.613 40.741 0.00 0.00 31.64 1.90
35 36 8.489489 AGAAGAAATACAGAGGCATCTTATGAA 58.511 33.333 0.00 0.00 31.64 2.57
37 38 7.222872 AGAAATACAGAGGCATCTTATGAAGG 58.777 38.462 0.00 0.00 31.64 3.46
38 39 6.506538 AATACAGAGGCATCTTATGAAGGT 57.493 37.500 0.00 0.00 31.64 3.50
39 40 7.618019 AATACAGAGGCATCTTATGAAGGTA 57.382 36.000 0.00 0.00 31.64 3.08
40 41 5.283457 ACAGAGGCATCTTATGAAGGTAC 57.717 43.478 0.00 0.00 31.64 3.34
41 42 4.202161 ACAGAGGCATCTTATGAAGGTACG 60.202 45.833 0.00 0.00 31.64 3.67
43 44 4.051922 GAGGCATCTTATGAAGGTACGTG 58.948 47.826 0.00 0.00 0.00 4.49
45 46 4.161565 AGGCATCTTATGAAGGTACGTGAA 59.838 41.667 0.00 0.00 0.00 3.18
46 47 4.508124 GGCATCTTATGAAGGTACGTGAAG 59.492 45.833 0.00 0.00 0.00 3.02
47 48 5.348986 GCATCTTATGAAGGTACGTGAAGA 58.651 41.667 0.00 0.00 0.00 2.87
48 49 5.986135 GCATCTTATGAAGGTACGTGAAGAT 59.014 40.000 0.00 8.38 33.54 2.40
49 50 6.480320 GCATCTTATGAAGGTACGTGAAGATT 59.520 38.462 0.00 0.00 31.49 2.40
51 52 7.165460 TCTTATGAAGGTACGTGAAGATTGA 57.835 36.000 0.00 0.00 0.00 2.57
52 53 7.033791 TCTTATGAAGGTACGTGAAGATTGAC 58.966 38.462 0.00 0.00 0.00 3.18
55 56 4.082408 TGAAGGTACGTGAAGATTGACGAT 60.082 41.667 11.44 0.00 40.22 3.73
56 57 3.770666 AGGTACGTGAAGATTGACGATG 58.229 45.455 11.44 0.00 40.22 3.84
57 58 2.281762 GGTACGTGAAGATTGACGATGC 59.718 50.000 11.44 1.48 40.22 3.91
59 60 0.298707 CGTGAAGATTGACGATGCCG 59.701 55.000 0.00 0.00 40.22 5.69
60 61 0.652592 GTGAAGATTGACGATGCCGG 59.347 55.000 0.00 0.00 40.78 6.13
61 62 1.089481 TGAAGATTGACGATGCCGGC 61.089 55.000 22.73 22.73 46.00 6.13
62 63 1.776034 GAAGATTGACGATGCCGGCC 61.776 60.000 26.77 8.57 44.97 6.13
63 64 3.640000 GATTGACGATGCCGGCCG 61.640 66.667 26.77 23.68 44.97 6.13
171 5004 6.627087 TCTAGAGTGACAGGATTGGAAAAT 57.373 37.500 0.00 0.00 0.00 1.82
287 5121 1.396653 CATGGATGGGAAACAGAGCC 58.603 55.000 0.00 0.00 0.00 4.70
409 5356 2.350057 AATGGAGATCGAGACGAGGA 57.650 50.000 0.00 0.00 39.91 3.71
432 5379 2.966516 ACCGGAAAGGCTAGGATAAGAG 59.033 50.000 9.46 0.00 46.52 2.85
797 5797 0.601558 AGACTTCTCCGCGCTAACAA 59.398 50.000 5.56 0.00 0.00 2.83
798 5798 1.000506 AGACTTCTCCGCGCTAACAAA 59.999 47.619 5.56 0.00 0.00 2.83
1270 6370 3.519510 TCCCCTTCTTGTATGGAGTCTTG 59.480 47.826 0.00 0.00 0.00 3.02
1293 6393 6.962182 TGACTTGATCTAAGGATGGTCAATT 58.038 36.000 8.95 0.00 40.84 2.32
1594 6717 6.846505 AGATGGACTCCTACCTTGATCAATTA 59.153 38.462 8.96 2.87 0.00 1.40
2244 7401 2.159179 CCCCCACAGGATTTTAAGGG 57.841 55.000 0.00 0.00 38.24 3.95
2294 7455 9.978044 AGATATATCTACGAAACAAAAGGTACC 57.022 33.333 13.76 2.73 34.85 3.34
3368 8589 5.166398 GGATTTCAGAAATGTTTCAGCTGG 58.834 41.667 15.13 0.00 39.61 4.85
3902 9150 1.004044 AGATTGCTGTGAAGGGACTGG 59.996 52.381 0.00 0.00 40.86 4.00
4177 9431 7.639039 CACATAGTACGGCATTAATCAACATT 58.361 34.615 0.00 0.00 0.00 2.71
4562 9834 6.771267 ACTTGATACACATCATCATCTGCATT 59.229 34.615 0.00 0.00 40.85 3.56
5036 10722 2.888834 ATTGCACAAAACCACCACTC 57.111 45.000 0.00 0.00 0.00 3.51
5218 10906 2.553172 ACCTCTCAGATATAACGGCGAC 59.447 50.000 16.62 0.00 0.00 5.19
5246 10935 1.580059 ACGTTATCCTCATGTGGGGT 58.420 50.000 13.71 6.26 0.00 4.95
5255 10944 0.697511 TCATGTGGGGTCTATGGGGG 60.698 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.081198 CCTCTGTATTTCTTCTCCACTGCT 60.081 45.833 0.00 0.00 0.00 4.24
2 3 4.187694 CCTCTGTATTTCTTCTCCACTGC 58.812 47.826 0.00 0.00 0.00 4.40
3 4 4.187694 GCCTCTGTATTTCTTCTCCACTG 58.812 47.826 0.00 0.00 0.00 3.66
4 5 3.840666 TGCCTCTGTATTTCTTCTCCACT 59.159 43.478 0.00 0.00 0.00 4.00
5 6 4.207891 TGCCTCTGTATTTCTTCTCCAC 57.792 45.455 0.00 0.00 0.00 4.02
7 8 5.289083 AGATGCCTCTGTATTTCTTCTCC 57.711 43.478 0.00 0.00 0.00 3.71
8 9 8.147058 TCATAAGATGCCTCTGTATTTCTTCTC 58.853 37.037 0.00 0.00 0.00 2.87
10 11 8.668510 TTCATAAGATGCCTCTGTATTTCTTC 57.331 34.615 0.00 0.00 0.00 2.87
11 12 7.718753 CCTTCATAAGATGCCTCTGTATTTCTT 59.281 37.037 0.00 0.00 0.00 2.52
14 15 6.904626 ACCTTCATAAGATGCCTCTGTATTT 58.095 36.000 0.00 0.00 0.00 1.40
15 16 6.506538 ACCTTCATAAGATGCCTCTGTATT 57.493 37.500 0.00 0.00 0.00 1.89
16 17 6.294787 CGTACCTTCATAAGATGCCTCTGTAT 60.295 42.308 0.00 0.00 0.00 2.29
17 18 5.009710 CGTACCTTCATAAGATGCCTCTGTA 59.990 44.000 0.00 0.00 0.00 2.74
19 20 4.202161 ACGTACCTTCATAAGATGCCTCTG 60.202 45.833 0.00 0.00 0.00 3.35
20 21 3.961408 ACGTACCTTCATAAGATGCCTCT 59.039 43.478 0.00 0.00 0.00 3.69
21 22 4.051922 CACGTACCTTCATAAGATGCCTC 58.948 47.826 0.00 0.00 0.00 4.70
22 23 3.704566 TCACGTACCTTCATAAGATGCCT 59.295 43.478 0.00 0.00 0.00 4.75
23 24 4.054780 TCACGTACCTTCATAAGATGCC 57.945 45.455 0.00 0.00 0.00 4.40
24 25 5.348986 TCTTCACGTACCTTCATAAGATGC 58.651 41.667 0.00 0.00 0.00 3.91
26 27 7.707035 GTCAATCTTCACGTACCTTCATAAGAT 59.293 37.037 0.00 0.00 34.55 2.40
27 28 7.033791 GTCAATCTTCACGTACCTTCATAAGA 58.966 38.462 0.00 0.00 0.00 2.10
28 29 6.020599 CGTCAATCTTCACGTACCTTCATAAG 60.021 42.308 0.00 0.00 0.00 1.73
30 31 5.124297 TCGTCAATCTTCACGTACCTTCATA 59.876 40.000 0.00 0.00 37.30 2.15
32 33 3.253921 TCGTCAATCTTCACGTACCTTCA 59.746 43.478 0.00 0.00 37.30 3.02
33 34 3.829948 TCGTCAATCTTCACGTACCTTC 58.170 45.455 0.00 0.00 37.30 3.46
35 36 3.770666 CATCGTCAATCTTCACGTACCT 58.229 45.455 0.00 0.00 37.30 3.08
37 38 2.281762 GGCATCGTCAATCTTCACGTAC 59.718 50.000 0.00 0.00 37.30 3.67
38 39 2.536365 GGCATCGTCAATCTTCACGTA 58.464 47.619 0.00 0.00 37.30 3.57
39 40 1.359848 GGCATCGTCAATCTTCACGT 58.640 50.000 0.00 0.00 37.30 4.49
40 41 0.298707 CGGCATCGTCAATCTTCACG 59.701 55.000 0.00 0.00 37.36 4.35
41 42 0.652592 CCGGCATCGTCAATCTTCAC 59.347 55.000 0.00 0.00 33.95 3.18
43 44 1.643832 GCCGGCATCGTCAATCTTC 59.356 57.895 24.80 0.00 33.95 2.87
45 46 2.203070 GGCCGGCATCGTCAATCT 60.203 61.111 30.85 0.00 33.95 2.40
46 47 3.640000 CGGCCGGCATCGTCAATC 61.640 66.667 30.85 6.07 33.95 2.67
287 5121 2.653234 AGCAAGCCCATAGGATCAAG 57.347 50.000 0.00 0.00 33.47 3.02
409 5356 2.769602 TATCCTAGCCTTTCCGGTCT 57.230 50.000 0.00 0.00 34.25 3.85
432 5379 7.992754 ATAAGGCCAACATCTCTATGATTTC 57.007 36.000 5.01 0.00 36.54 2.17
1198 6296 1.275010 GGAAATGGTTGCCCAAATCGT 59.725 47.619 0.00 0.00 46.04 3.73
1270 6370 7.226325 CAGAATTGACCATCCTTAGATCAAGTC 59.774 40.741 4.96 4.96 32.91 3.01
1594 6717 1.388531 AGGGTCGTCCACCTCTGAT 59.611 57.895 0.04 0.00 45.95 2.90
2294 7455 8.471457 CGACATTTTGTATGAAGAAAAACAGTG 58.529 33.333 0.00 0.00 32.27 3.66
2504 7704 2.414994 AAGACATGCCCTGACTGATG 57.585 50.000 0.00 0.00 30.04 3.07
2778 7981 3.616379 GCTCAGATTCAGTGCTTGTCTAC 59.384 47.826 0.00 0.00 0.00 2.59
3085 8303 7.342581 TGTAGTCTATTGCCACCATGAAATTA 58.657 34.615 0.00 0.00 0.00 1.40
3368 8589 5.173774 TCGCTTGCAATCTTCAAATATCC 57.826 39.130 0.00 0.00 0.00 2.59
4177 9431 5.093677 TCTCTAAGGCCTGGCATATAATCA 58.906 41.667 22.05 0.00 0.00 2.57
4562 9834 4.491234 AACAACTCACACGAACAACAAA 57.509 36.364 0.00 0.00 0.00 2.83
4886 10569 4.202172 TGCCGCTAATAGCACACTATAACA 60.202 41.667 13.15 0.00 42.58 2.41
5036 10722 1.808411 TTCGCAAACCTAGCCTTCAG 58.192 50.000 0.00 0.00 0.00 3.02
5145 10833 1.651987 CCCGTCTGTCATAAACGCAT 58.348 50.000 0.00 0.00 35.17 4.73
5234 10922 0.767375 CCCATAGACCCCACATGAGG 59.233 60.000 0.00 0.00 0.00 3.86
5246 10935 0.326238 GACAGGTGGACCCCCATAGA 60.326 60.000 0.00 0.00 45.68 1.98
5255 10944 2.859165 TCTTTGGATGACAGGTGGAC 57.141 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.