Multiple sequence alignment - TraesCS7D01G027000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G027000 chr7D 100.000 3347 0 0 1 3347 13099162 13095816 0.000000e+00 6181.0
1 TraesCS7D01G027000 chr7D 83.292 2442 217 102 706 3003 13029843 13027449 0.000000e+00 2073.0
2 TraesCS7D01G027000 chr7D 88.593 1315 114 24 1353 2642 13066899 13065596 0.000000e+00 1565.0
3 TraesCS7D01G027000 chr7D 84.823 593 50 23 706 1271 13067829 13067250 8.110000e-156 560.0
4 TraesCS7D01G027000 chr7D 83.732 209 19 10 3150 3347 13027314 13027110 2.050000e-42 183.0
5 TraesCS7D01G027000 chr7A 90.932 2018 134 22 393 2395 12653338 12651355 0.000000e+00 2667.0
6 TraesCS7D01G027000 chr7A 85.375 2441 230 83 706 3072 12455648 12453261 0.000000e+00 2412.0
7 TraesCS7D01G027000 chr7A 83.890 2427 231 80 696 3006 12429974 12427592 0.000000e+00 2169.0
8 TraesCS7D01G027000 chr7A 79.586 725 89 42 2660 3347 12650780 12650078 6.540000e-127 464.0
9 TraesCS7D01G027000 chr7A 84.038 213 17 11 3148 3347 12427459 12427251 4.410000e-44 189.0
10 TraesCS7D01G027000 chr7A 88.344 163 11 4 619 775 12430093 12429933 4.410000e-44 189.0
11 TraesCS7D01G027000 chr7A 92.958 71 5 0 619 689 12457518 12457448 1.640000e-18 104.0
12 TraesCS7D01G027000 chr4A 84.542 2303 214 72 706 2925 724782335 724784578 0.000000e+00 2150.0
13 TraesCS7D01G027000 chr4A 89.876 1699 102 19 426 2118 724580656 724579022 0.000000e+00 2121.0
14 TraesCS7D01G027000 chr4A 87.137 1516 110 37 1403 2888 724399909 724398449 0.000000e+00 1640.0
15 TraesCS7D01G027000 chr4A 87.632 663 38 23 706 1353 724400544 724399911 0.000000e+00 730.0
16 TraesCS7D01G027000 chr4A 83.562 219 19 7 2226 2428 724578971 724578754 4.410000e-44 189.0
17 TraesCS7D01G027000 chr4D 82.729 2426 245 92 706 2999 506607452 506605069 0.000000e+00 1999.0
18 TraesCS7D01G027000 chr4D 84.080 201 17 10 3158 3347 506604854 506604658 2.650000e-41 180.0
19 TraesCS7D01G027000 chr2D 81.513 119 20 2 407 524 545040995 545040878 2.750000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G027000 chr7D 13095816 13099162 3346 True 6181.0 6181 100.0000 1 3347 1 chr7D.!!$R1 3346
1 TraesCS7D01G027000 chr7D 13027110 13029843 2733 True 1128.0 2073 83.5120 706 3347 2 chr7D.!!$R2 2641
2 TraesCS7D01G027000 chr7D 13065596 13067829 2233 True 1062.5 1565 86.7080 706 2642 2 chr7D.!!$R3 1936
3 TraesCS7D01G027000 chr7A 12650078 12653338 3260 True 1565.5 2667 85.2590 393 3347 2 chr7A.!!$R3 2954
4 TraesCS7D01G027000 chr7A 12453261 12457518 4257 True 1258.0 2412 89.1665 619 3072 2 chr7A.!!$R2 2453
5 TraesCS7D01G027000 chr7A 12427251 12430093 2842 True 849.0 2169 85.4240 619 3347 3 chr7A.!!$R1 2728
6 TraesCS7D01G027000 chr4A 724782335 724784578 2243 False 2150.0 2150 84.5420 706 2925 1 chr4A.!!$F1 2219
7 TraesCS7D01G027000 chr4A 724398449 724400544 2095 True 1185.0 1640 87.3845 706 2888 2 chr4A.!!$R1 2182
8 TraesCS7D01G027000 chr4A 724578754 724580656 1902 True 1155.0 2121 86.7190 426 2428 2 chr4A.!!$R2 2002
9 TraesCS7D01G027000 chr4D 506604658 506607452 2794 True 1089.5 1999 83.4045 706 3347 2 chr4D.!!$R1 2641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.036483 ATCACACACATACGCCAGCA 60.036 50.0 0.00 0.0 0.0 4.41 F
331 332 0.036483 TCACACACATACGCCAGCAT 60.036 50.0 0.00 0.0 0.0 3.79 F
1078 2959 0.037882 CGAGGAAGACAAGCTGCTGA 60.038 55.0 1.35 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 4151 0.453282 CGCCATTGTTCTTGCACTCG 60.453 55.000 0.00 0.0 0.00 4.18 R
2155 4385 3.925913 CGAGCAAAATTATTTGGGTGTGG 59.074 43.478 1.09 0.0 44.93 4.17 R
2828 5458 1.414550 TCACAAGACCAACATCGTGGA 59.585 47.619 0.00 0.0 41.65 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.753721 AAAAGTGTGGCTCTCTTAGATCT 57.246 39.130 0.00 0.00 30.91 2.75
41 42 5.337578 AAAGTGTGGCTCTCTTAGATCTC 57.662 43.478 0.00 0.00 30.91 2.75
42 43 3.974719 AGTGTGGCTCTCTTAGATCTCA 58.025 45.455 0.00 0.00 0.00 3.27
43 44 4.545678 AGTGTGGCTCTCTTAGATCTCAT 58.454 43.478 0.00 0.00 0.00 2.90
44 45 4.584325 AGTGTGGCTCTCTTAGATCTCATC 59.416 45.833 0.00 0.00 0.00 2.92
45 46 3.567585 TGTGGCTCTCTTAGATCTCATCG 59.432 47.826 0.00 0.00 0.00 3.84
46 47 3.818210 GTGGCTCTCTTAGATCTCATCGA 59.182 47.826 0.00 0.00 0.00 3.59
47 48 4.458989 GTGGCTCTCTTAGATCTCATCGAT 59.541 45.833 0.00 0.00 34.25 3.59
48 49 5.645929 GTGGCTCTCTTAGATCTCATCGATA 59.354 44.000 0.00 0.00 30.84 2.92
49 50 6.150307 GTGGCTCTCTTAGATCTCATCGATAA 59.850 42.308 0.00 0.00 30.84 1.75
50 51 6.374053 TGGCTCTCTTAGATCTCATCGATAAG 59.626 42.308 0.00 0.00 30.84 1.73
51 52 6.183360 GGCTCTCTTAGATCTCATCGATAAGG 60.183 46.154 0.00 0.00 30.84 2.69
52 53 6.597672 GCTCTCTTAGATCTCATCGATAAGGA 59.402 42.308 0.00 0.00 30.84 3.36
53 54 7.120579 GCTCTCTTAGATCTCATCGATAAGGAA 59.879 40.741 0.00 0.00 30.84 3.36
54 55 8.330466 TCTCTTAGATCTCATCGATAAGGAAC 57.670 38.462 0.00 0.00 30.84 3.62
55 56 7.939588 TCTCTTAGATCTCATCGATAAGGAACA 59.060 37.037 0.00 0.00 30.84 3.18
56 57 8.642935 TCTTAGATCTCATCGATAAGGAACAT 57.357 34.615 0.00 0.00 30.84 2.71
57 58 8.735315 TCTTAGATCTCATCGATAAGGAACATC 58.265 37.037 0.00 0.00 30.84 3.06
58 59 6.907853 AGATCTCATCGATAAGGAACATCA 57.092 37.500 0.00 0.00 30.84 3.07
59 60 7.295322 AGATCTCATCGATAAGGAACATCAA 57.705 36.000 0.00 0.00 30.84 2.57
60 61 7.730084 AGATCTCATCGATAAGGAACATCAAA 58.270 34.615 0.00 0.00 30.84 2.69
61 62 8.206867 AGATCTCATCGATAAGGAACATCAAAA 58.793 33.333 0.00 0.00 30.84 2.44
62 63 8.915057 ATCTCATCGATAAGGAACATCAAAAT 57.085 30.769 0.00 0.00 0.00 1.82
63 64 8.370493 TCTCATCGATAAGGAACATCAAAATC 57.630 34.615 0.00 0.00 0.00 2.17
64 65 7.986889 TCTCATCGATAAGGAACATCAAAATCA 59.013 33.333 0.00 0.00 0.00 2.57
65 66 8.504812 TCATCGATAAGGAACATCAAAATCAA 57.495 30.769 0.00 0.00 0.00 2.57
66 67 8.615211 TCATCGATAAGGAACATCAAAATCAAG 58.385 33.333 0.00 0.00 0.00 3.02
67 68 8.615211 CATCGATAAGGAACATCAAAATCAAGA 58.385 33.333 0.00 0.00 0.00 3.02
68 69 8.737168 TCGATAAGGAACATCAAAATCAAGAT 57.263 30.769 0.00 0.00 0.00 2.40
69 70 9.830975 TCGATAAGGAACATCAAAATCAAGATA 57.169 29.630 0.00 0.00 0.00 1.98
88 89 9.788889 TCAAGATATTCATTTAGAGCATCATGT 57.211 29.630 0.00 0.00 37.82 3.21
103 104 9.955102 AGAGCATCATGTATACAATTATGTGAT 57.045 29.630 10.14 10.24 37.83 3.06
122 123 8.682936 ATGTGATTCTCAAGTTAACTTCAACT 57.317 30.769 18.00 2.66 40.49 3.16
123 124 9.778741 ATGTGATTCTCAAGTTAACTTCAACTA 57.221 29.630 18.00 3.88 37.78 2.24
124 125 9.778741 TGTGATTCTCAAGTTAACTTCAACTAT 57.221 29.630 18.00 8.22 37.78 2.12
132 133 8.736244 TCAAGTTAACTTCAACTATATTTGGGC 58.264 33.333 18.00 0.00 37.78 5.36
133 134 7.640597 AGTTAACTTCAACTATATTTGGGCC 57.359 36.000 1.12 0.00 36.99 5.80
134 135 7.410991 AGTTAACTTCAACTATATTTGGGCCT 58.589 34.615 4.53 0.00 36.99 5.19
135 136 7.339466 AGTTAACTTCAACTATATTTGGGCCTG 59.661 37.037 4.53 0.00 36.99 4.85
136 137 5.193099 ACTTCAACTATATTTGGGCCTGT 57.807 39.130 4.53 0.00 0.00 4.00
137 138 5.580022 ACTTCAACTATATTTGGGCCTGTT 58.420 37.500 4.53 0.00 0.00 3.16
138 139 6.016555 ACTTCAACTATATTTGGGCCTGTTT 58.983 36.000 4.53 0.00 0.00 2.83
139 140 5.913137 TCAACTATATTTGGGCCTGTTTG 57.087 39.130 4.53 0.00 0.00 2.93
140 141 4.709397 TCAACTATATTTGGGCCTGTTTGG 59.291 41.667 4.53 0.00 39.35 3.28
150 151 3.977244 CTGTTTGGCGGCCCACAC 61.977 66.667 17.97 10.79 41.97 3.82
151 152 4.822628 TGTTTGGCGGCCCACACA 62.823 61.111 17.97 13.37 46.64 3.72
152 153 3.302344 GTTTGGCGGCCCACACAT 61.302 61.111 17.97 0.00 41.97 3.21
153 154 2.988684 TTTGGCGGCCCACACATC 60.989 61.111 17.97 0.00 41.97 3.06
156 157 4.856801 GGCGGCCCACACATCGAT 62.857 66.667 8.12 0.00 0.00 3.59
157 158 3.272334 GCGGCCCACACATCGATC 61.272 66.667 0.00 0.00 0.00 3.69
158 159 2.588877 CGGCCCACACATCGATCC 60.589 66.667 0.00 0.00 0.00 3.36
159 160 2.588877 GGCCCACACATCGATCCG 60.589 66.667 0.00 0.00 0.00 4.18
160 161 3.272334 GCCCACACATCGATCCGC 61.272 66.667 0.00 0.00 0.00 5.54
161 162 2.186644 CCCACACATCGATCCGCA 59.813 61.111 0.00 0.00 0.00 5.69
162 163 1.884464 CCCACACATCGATCCGCAG 60.884 63.158 0.00 0.00 0.00 5.18
163 164 1.141665 CCACACATCGATCCGCAGA 59.858 57.895 0.00 0.00 0.00 4.26
164 165 0.460109 CCACACATCGATCCGCAGAA 60.460 55.000 0.00 0.00 0.00 3.02
165 166 0.647410 CACACATCGATCCGCAGAAC 59.353 55.000 0.00 0.00 0.00 3.01
166 167 0.246360 ACACATCGATCCGCAGAACA 59.754 50.000 0.00 0.00 0.00 3.18
167 168 0.647410 CACATCGATCCGCAGAACAC 59.353 55.000 0.00 0.00 0.00 3.32
168 169 0.246360 ACATCGATCCGCAGAACACA 59.754 50.000 0.00 0.00 0.00 3.72
169 170 1.337728 ACATCGATCCGCAGAACACAA 60.338 47.619 0.00 0.00 0.00 3.33
170 171 1.731709 CATCGATCCGCAGAACACAAA 59.268 47.619 0.00 0.00 0.00 2.83
171 172 1.872388 TCGATCCGCAGAACACAAAA 58.128 45.000 0.00 0.00 0.00 2.44
172 173 1.798223 TCGATCCGCAGAACACAAAAG 59.202 47.619 0.00 0.00 0.00 2.27
173 174 1.798223 CGATCCGCAGAACACAAAAGA 59.202 47.619 0.00 0.00 0.00 2.52
174 175 2.416547 CGATCCGCAGAACACAAAAGAT 59.583 45.455 0.00 0.00 0.00 2.40
175 176 3.484229 CGATCCGCAGAACACAAAAGATC 60.484 47.826 0.00 0.00 0.00 2.75
176 177 2.151202 TCCGCAGAACACAAAAGATCC 58.849 47.619 0.00 0.00 0.00 3.36
177 178 1.135972 CCGCAGAACACAAAAGATCCG 60.136 52.381 0.00 0.00 0.00 4.18
178 179 1.135972 CGCAGAACACAAAAGATCCGG 60.136 52.381 0.00 0.00 0.00 5.14
179 180 1.401539 GCAGAACACAAAAGATCCGGC 60.402 52.381 0.00 0.00 0.00 6.13
180 181 1.135972 CAGAACACAAAAGATCCGGCG 60.136 52.381 0.00 0.00 0.00 6.46
181 182 0.454452 GAACACAAAAGATCCGGCGC 60.454 55.000 0.00 0.00 0.00 6.53
182 183 2.098298 CACAAAAGATCCGGCGCG 59.902 61.111 0.00 0.00 0.00 6.86
194 195 3.577313 GGCGCGGGCTCTTTGATC 61.577 66.667 24.48 0.53 39.81 2.92
195 196 2.819595 GCGCGGGCTCTTTGATCA 60.820 61.111 18.33 0.00 35.83 2.92
196 197 2.398554 GCGCGGGCTCTTTGATCAA 61.399 57.895 18.33 3.38 35.83 2.57
197 198 1.922135 GCGCGGGCTCTTTGATCAAA 61.922 55.000 19.45 19.45 35.83 2.69
198 199 0.734889 CGCGGGCTCTTTGATCAAAT 59.265 50.000 20.76 0.00 0.00 2.32
199 200 1.939934 CGCGGGCTCTTTGATCAAATA 59.060 47.619 20.76 13.10 0.00 1.40
200 201 2.286418 CGCGGGCTCTTTGATCAAATAC 60.286 50.000 20.76 12.74 0.00 1.89
201 202 2.682856 GCGGGCTCTTTGATCAAATACA 59.317 45.455 20.76 7.71 0.00 2.29
202 203 3.316308 GCGGGCTCTTTGATCAAATACAT 59.684 43.478 20.76 0.00 0.00 2.29
203 204 4.555511 GCGGGCTCTTTGATCAAATACATC 60.556 45.833 20.76 10.20 0.00 3.06
204 205 4.818546 CGGGCTCTTTGATCAAATACATCT 59.181 41.667 20.76 0.00 0.00 2.90
205 206 5.277683 CGGGCTCTTTGATCAAATACATCTG 60.278 44.000 20.76 8.01 0.00 2.90
206 207 5.009410 GGGCTCTTTGATCAAATACATCTGG 59.991 44.000 20.76 7.32 0.00 3.86
207 208 5.009410 GGCTCTTTGATCAAATACATCTGGG 59.991 44.000 20.76 8.83 0.00 4.45
208 209 5.591877 GCTCTTTGATCAAATACATCTGGGT 59.408 40.000 20.76 0.00 0.00 4.51
209 210 6.238593 GCTCTTTGATCAAATACATCTGGGTC 60.239 42.308 20.76 1.70 0.00 4.46
210 211 6.122277 TCTTTGATCAAATACATCTGGGTCC 58.878 40.000 20.76 0.00 0.00 4.46
211 212 5.715439 TTGATCAAATACATCTGGGTCCT 57.285 39.130 5.45 0.00 0.00 3.85
212 213 5.039920 TGATCAAATACATCTGGGTCCTG 57.960 43.478 0.00 0.00 0.00 3.86
213 214 4.721274 TGATCAAATACATCTGGGTCCTGA 59.279 41.667 0.00 0.00 0.00 3.86
214 215 5.191522 TGATCAAATACATCTGGGTCCTGAA 59.808 40.000 0.00 0.00 0.00 3.02
215 216 5.715439 TCAAATACATCTGGGTCCTGAAT 57.285 39.130 0.80 0.00 0.00 2.57
216 217 6.078456 TCAAATACATCTGGGTCCTGAATT 57.922 37.500 0.80 0.00 0.00 2.17
217 218 7.206789 TCAAATACATCTGGGTCCTGAATTA 57.793 36.000 0.80 0.00 0.00 1.40
218 219 7.054124 TCAAATACATCTGGGTCCTGAATTAC 58.946 38.462 0.80 0.00 0.00 1.89
219 220 3.933861 ACATCTGGGTCCTGAATTACC 57.066 47.619 0.80 0.00 34.85 2.85
220 221 3.189606 ACATCTGGGTCCTGAATTACCA 58.810 45.455 0.80 0.00 37.51 3.25
221 222 3.591527 ACATCTGGGTCCTGAATTACCAA 59.408 43.478 0.80 0.00 37.51 3.67
222 223 4.202441 CATCTGGGTCCTGAATTACCAAG 58.798 47.826 0.80 0.00 38.06 3.61
223 224 2.026262 TCTGGGTCCTGAATTACCAAGC 60.026 50.000 0.00 0.00 36.83 4.01
224 225 1.707989 TGGGTCCTGAATTACCAAGCA 59.292 47.619 0.00 0.00 37.51 3.91
225 226 2.092323 GGGTCCTGAATTACCAAGCAC 58.908 52.381 0.00 0.00 37.51 4.40
226 227 1.737793 GGTCCTGAATTACCAAGCACG 59.262 52.381 0.00 0.00 35.73 5.34
227 228 1.130561 GTCCTGAATTACCAAGCACGC 59.869 52.381 0.00 0.00 0.00 5.34
228 229 1.164411 CCTGAATTACCAAGCACGCA 58.836 50.000 0.00 0.00 0.00 5.24
229 230 1.745087 CCTGAATTACCAAGCACGCAT 59.255 47.619 0.00 0.00 0.00 4.73
230 231 2.478370 CCTGAATTACCAAGCACGCATG 60.478 50.000 0.00 0.00 0.00 4.06
249 250 5.535043 CATGCATGCATATACACATACGT 57.465 39.130 31.73 4.16 34.91 3.57
250 251 5.553721 CATGCATGCATATACACATACGTC 58.446 41.667 31.73 0.00 34.91 4.34
251 252 4.881920 TGCATGCATATACACATACGTCT 58.118 39.130 18.46 0.00 0.00 4.18
252 253 6.019779 TGCATGCATATACACATACGTCTA 57.980 37.500 18.46 0.00 0.00 2.59
253 254 6.092748 TGCATGCATATACACATACGTCTAG 58.907 40.000 18.46 0.00 0.00 2.43
254 255 6.093404 GCATGCATATACACATACGTCTAGT 58.907 40.000 14.21 0.00 0.00 2.57
255 256 6.586463 GCATGCATATACACATACGTCTAGTT 59.414 38.462 14.21 0.00 0.00 2.24
256 257 7.410835 GCATGCATATACACATACGTCTAGTTG 60.411 40.741 14.21 0.00 0.00 3.16
257 258 7.266922 TGCATATACACATACGTCTAGTTGA 57.733 36.000 0.00 0.00 0.00 3.18
258 259 7.882179 TGCATATACACATACGTCTAGTTGAT 58.118 34.615 0.00 0.00 0.00 2.57
259 260 8.021396 TGCATATACACATACGTCTAGTTGATC 58.979 37.037 0.00 0.00 0.00 2.92
260 261 7.485277 GCATATACACATACGTCTAGTTGATCC 59.515 40.741 0.00 0.00 0.00 3.36
261 262 6.954487 ATACACATACGTCTAGTTGATCCA 57.046 37.500 0.00 0.00 0.00 3.41
262 263 5.854010 ACACATACGTCTAGTTGATCCAT 57.146 39.130 0.00 0.00 0.00 3.41
263 264 5.833082 ACACATACGTCTAGTTGATCCATC 58.167 41.667 0.00 0.00 0.00 3.51
264 265 5.221263 ACACATACGTCTAGTTGATCCATCC 60.221 44.000 0.00 0.00 0.00 3.51
265 266 4.893524 ACATACGTCTAGTTGATCCATCCA 59.106 41.667 0.00 0.00 0.00 3.41
266 267 3.802948 ACGTCTAGTTGATCCATCCAC 57.197 47.619 0.00 0.00 0.00 4.02
267 268 3.366396 ACGTCTAGTTGATCCATCCACT 58.634 45.455 0.00 0.00 36.79 4.00
268 269 3.769844 ACGTCTAGTTGATCCATCCACTT 59.230 43.478 0.00 0.00 34.91 3.16
269 270 4.115516 CGTCTAGTTGATCCATCCACTTG 58.884 47.826 0.00 0.00 34.91 3.16
270 271 3.873952 GTCTAGTTGATCCATCCACTTGC 59.126 47.826 0.00 0.00 34.91 4.01
271 272 3.776969 TCTAGTTGATCCATCCACTTGCT 59.223 43.478 0.00 0.00 34.91 3.91
272 273 2.996631 AGTTGATCCATCCACTTGCTC 58.003 47.619 0.00 0.00 29.45 4.26
273 274 2.306805 AGTTGATCCATCCACTTGCTCA 59.693 45.455 0.00 0.00 29.45 4.26
274 275 3.053842 AGTTGATCCATCCACTTGCTCAT 60.054 43.478 0.00 0.00 29.45 2.90
275 276 2.927028 TGATCCATCCACTTGCTCATG 58.073 47.619 0.00 0.00 0.00 3.07
276 277 2.240414 TGATCCATCCACTTGCTCATGT 59.760 45.455 0.00 0.00 0.00 3.21
277 278 3.455543 TGATCCATCCACTTGCTCATGTA 59.544 43.478 0.00 0.00 0.00 2.29
278 279 3.548745 TCCATCCACTTGCTCATGTAG 57.451 47.619 0.00 0.00 0.00 2.74
279 280 2.840038 TCCATCCACTTGCTCATGTAGT 59.160 45.455 0.00 0.00 0.00 2.73
280 281 4.030216 TCCATCCACTTGCTCATGTAGTA 58.970 43.478 0.00 0.00 0.00 1.82
281 282 4.122776 CCATCCACTTGCTCATGTAGTAC 58.877 47.826 0.00 0.00 0.00 2.73
282 283 3.503827 TCCACTTGCTCATGTAGTACG 57.496 47.619 0.00 0.00 0.00 3.67
283 284 1.927174 CCACTTGCTCATGTAGTACGC 59.073 52.381 0.00 0.00 0.00 4.42
284 285 2.606108 CACTTGCTCATGTAGTACGCA 58.394 47.619 0.00 0.00 0.00 5.24
285 286 3.190079 CACTTGCTCATGTAGTACGCAT 58.810 45.455 2.07 1.01 0.00 4.73
286 287 3.000623 CACTTGCTCATGTAGTACGCATG 59.999 47.826 20.27 20.27 43.55 4.06
287 288 2.223537 TGCTCATGTAGTACGCATGG 57.776 50.000 23.53 17.75 42.72 3.66
288 289 1.754226 TGCTCATGTAGTACGCATGGA 59.246 47.619 23.53 14.30 42.72 3.41
289 290 2.167487 TGCTCATGTAGTACGCATGGAA 59.833 45.455 23.53 12.56 42.72 3.53
290 291 3.194861 GCTCATGTAGTACGCATGGAAA 58.805 45.455 23.53 11.00 42.72 3.13
291 292 3.621268 GCTCATGTAGTACGCATGGAAAA 59.379 43.478 23.53 10.75 42.72 2.29
292 293 4.494199 GCTCATGTAGTACGCATGGAAAAC 60.494 45.833 23.53 11.60 42.72 2.43
293 294 4.570930 TCATGTAGTACGCATGGAAAACA 58.429 39.130 23.53 8.81 42.72 2.83
294 295 4.998033 TCATGTAGTACGCATGGAAAACAA 59.002 37.500 23.53 8.30 42.72 2.83
295 296 4.735662 TGTAGTACGCATGGAAAACAAC 57.264 40.909 0.00 0.00 0.00 3.32
296 297 4.127907 TGTAGTACGCATGGAAAACAACA 58.872 39.130 0.00 0.00 0.00 3.33
297 298 4.575236 TGTAGTACGCATGGAAAACAACAA 59.425 37.500 0.00 0.00 0.00 2.83
298 299 4.640789 AGTACGCATGGAAAACAACAAA 57.359 36.364 0.00 0.00 0.00 2.83
299 300 5.000012 AGTACGCATGGAAAACAACAAAA 58.000 34.783 0.00 0.00 0.00 2.44
300 301 5.040635 AGTACGCATGGAAAACAACAAAAG 58.959 37.500 0.00 0.00 0.00 2.27
301 302 3.194062 ACGCATGGAAAACAACAAAAGG 58.806 40.909 0.00 0.00 0.00 3.11
302 303 2.032979 CGCATGGAAAACAACAAAAGGC 60.033 45.455 0.00 0.00 0.00 4.35
303 304 2.941720 GCATGGAAAACAACAAAAGGCA 59.058 40.909 0.00 0.00 0.00 4.75
304 305 3.376546 GCATGGAAAACAACAAAAGGCAA 59.623 39.130 0.00 0.00 0.00 4.52
305 306 4.730324 GCATGGAAAACAACAAAAGGCAAC 60.730 41.667 0.00 0.00 0.00 4.17
306 307 4.008074 TGGAAAACAACAAAAGGCAACA 57.992 36.364 0.00 0.00 41.41 3.33
307 308 4.389374 TGGAAAACAACAAAAGGCAACAA 58.611 34.783 0.00 0.00 41.41 2.83
308 309 4.453819 TGGAAAACAACAAAAGGCAACAAG 59.546 37.500 0.00 0.00 41.41 3.16
309 310 4.693095 GGAAAACAACAAAAGGCAACAAGA 59.307 37.500 0.00 0.00 41.41 3.02
310 311 5.390461 GGAAAACAACAAAAGGCAACAAGAC 60.390 40.000 0.00 0.00 41.41 3.01
311 312 3.951775 ACAACAAAAGGCAACAAGACA 57.048 38.095 0.00 0.00 41.41 3.41
312 313 4.470334 ACAACAAAAGGCAACAAGACAT 57.530 36.364 0.00 0.00 41.41 3.06
313 314 4.432712 ACAACAAAAGGCAACAAGACATC 58.567 39.130 0.00 0.00 41.41 3.06
314 315 4.081752 ACAACAAAAGGCAACAAGACATCA 60.082 37.500 0.00 0.00 41.41 3.07
315 316 4.045636 ACAAAAGGCAACAAGACATCAC 57.954 40.909 0.00 0.00 41.41 3.06
316 317 3.446873 ACAAAAGGCAACAAGACATCACA 59.553 39.130 0.00 0.00 41.41 3.58
317 318 3.715628 AAAGGCAACAAGACATCACAC 57.284 42.857 0.00 0.00 41.41 3.82
318 319 2.346766 AGGCAACAAGACATCACACA 57.653 45.000 0.00 0.00 41.41 3.72
319 320 1.949525 AGGCAACAAGACATCACACAC 59.050 47.619 0.00 0.00 41.41 3.82
320 321 1.675483 GGCAACAAGACATCACACACA 59.325 47.619 0.00 0.00 0.00 3.72
321 322 2.294233 GGCAACAAGACATCACACACAT 59.706 45.455 0.00 0.00 0.00 3.21
322 323 3.501828 GGCAACAAGACATCACACACATA 59.498 43.478 0.00 0.00 0.00 2.29
323 324 4.466828 GCAACAAGACATCACACACATAC 58.533 43.478 0.00 0.00 0.00 2.39
324 325 4.701361 CAACAAGACATCACACACATACG 58.299 43.478 0.00 0.00 0.00 3.06
325 326 2.736721 ACAAGACATCACACACATACGC 59.263 45.455 0.00 0.00 0.00 4.42
326 327 2.010145 AGACATCACACACATACGCC 57.990 50.000 0.00 0.00 0.00 5.68
327 328 1.275010 AGACATCACACACATACGCCA 59.725 47.619 0.00 0.00 0.00 5.69
328 329 1.660607 GACATCACACACATACGCCAG 59.339 52.381 0.00 0.00 0.00 4.85
329 330 0.374758 CATCACACACATACGCCAGC 59.625 55.000 0.00 0.00 0.00 4.85
330 331 0.036483 ATCACACACATACGCCAGCA 60.036 50.000 0.00 0.00 0.00 4.41
331 332 0.036483 TCACACACATACGCCAGCAT 60.036 50.000 0.00 0.00 0.00 3.79
332 333 1.205893 TCACACACATACGCCAGCATA 59.794 47.619 0.00 0.00 0.00 3.14
333 334 2.158971 TCACACACATACGCCAGCATAT 60.159 45.455 0.00 0.00 0.00 1.78
334 335 2.221749 CACACACATACGCCAGCATATC 59.778 50.000 0.00 0.00 0.00 1.63
335 336 2.103094 ACACACATACGCCAGCATATCT 59.897 45.455 0.00 0.00 0.00 1.98
336 337 3.320826 ACACACATACGCCAGCATATCTA 59.679 43.478 0.00 0.00 0.00 1.98
337 338 4.202212 ACACACATACGCCAGCATATCTAA 60.202 41.667 0.00 0.00 0.00 2.10
338 339 4.150627 CACACATACGCCAGCATATCTAAC 59.849 45.833 0.00 0.00 0.00 2.34
339 340 3.364920 CACATACGCCAGCATATCTAACG 59.635 47.826 0.00 0.00 0.00 3.18
340 341 3.254903 ACATACGCCAGCATATCTAACGA 59.745 43.478 0.00 0.00 0.00 3.85
341 342 2.882927 ACGCCAGCATATCTAACGAA 57.117 45.000 0.00 0.00 0.00 3.85
342 343 3.173668 ACGCCAGCATATCTAACGAAA 57.826 42.857 0.00 0.00 0.00 3.46
343 344 2.864343 ACGCCAGCATATCTAACGAAAC 59.136 45.455 0.00 0.00 0.00 2.78
344 345 2.863740 CGCCAGCATATCTAACGAAACA 59.136 45.455 0.00 0.00 0.00 2.83
345 346 3.308595 CGCCAGCATATCTAACGAAACAA 59.691 43.478 0.00 0.00 0.00 2.83
346 347 4.588278 GCCAGCATATCTAACGAAACAAC 58.412 43.478 0.00 0.00 0.00 3.32
347 348 4.782195 GCCAGCATATCTAACGAAACAACG 60.782 45.833 0.00 0.00 39.31 4.10
349 350 5.517411 CCAGCATATCTAACGAAACAACGTA 59.483 40.000 0.00 0.00 45.83 3.57
350 351 6.200286 CCAGCATATCTAACGAAACAACGTAT 59.800 38.462 0.00 0.00 45.83 3.06
351 352 7.254319 CCAGCATATCTAACGAAACAACGTATT 60.254 37.037 0.00 0.00 45.83 1.89
352 353 7.579093 CAGCATATCTAACGAAACAACGTATTG 59.421 37.037 0.00 0.00 45.83 1.90
353 354 6.353582 GCATATCTAACGAAACAACGTATTGC 59.646 38.462 0.00 0.00 45.83 3.56
354 355 4.296537 TCTAACGAAACAACGTATTGCG 57.703 40.909 10.51 10.51 45.83 4.85
355 356 2.303707 AACGAAACAACGTATTGCGG 57.696 45.000 15.23 1.00 45.83 5.69
356 357 0.110554 ACGAAACAACGTATTGCGGC 60.111 50.000 15.23 0.00 44.72 6.53
357 358 0.110599 CGAAACAACGTATTGCGGCA 60.111 50.000 0.00 0.00 46.52 5.69
358 359 1.660614 CGAAACAACGTATTGCGGCAA 60.661 47.619 18.85 18.85 46.52 4.52
359 360 2.386249 GAAACAACGTATTGCGGCAAA 58.614 42.857 20.48 6.50 46.52 3.68
360 361 2.493713 AACAACGTATTGCGGCAAAA 57.506 40.000 20.48 0.00 46.52 2.44
361 362 2.493713 ACAACGTATTGCGGCAAAAA 57.506 40.000 20.48 8.26 46.52 1.94
389 390 8.854614 AAAAGGTAATGATATATCTGGCTGAC 57.145 34.615 13.79 3.95 0.00 3.51
390 391 6.214191 AGGTAATGATATATCTGGCTGACG 57.786 41.667 13.79 0.00 0.00 4.35
391 392 5.717178 AGGTAATGATATATCTGGCTGACGT 59.283 40.000 13.79 0.00 0.00 4.34
397 398 1.385528 TATCTGGCTGACGTTCGCTA 58.614 50.000 9.41 3.44 0.00 4.26
415 416 2.356125 GCTAAGAGAGGGTGGCATTTCA 60.356 50.000 0.00 0.00 0.00 2.69
418 419 2.519013 AGAGAGGGTGGCATTTCAAAC 58.481 47.619 0.00 0.00 0.00 2.93
419 420 2.158475 AGAGAGGGTGGCATTTCAAACA 60.158 45.455 0.00 0.00 0.00 2.83
432 433 4.879104 TTTCAAACATTTTTGCTGGCAG 57.121 36.364 10.94 10.94 41.78 4.85
464 466 5.476599 TGTGATGGAGGTGGTAATTTTTCAG 59.523 40.000 0.00 0.00 0.00 3.02
475 477 6.922957 GTGGTAATTTTTCAGAAACAGCATGA 59.077 34.615 0.00 0.00 39.69 3.07
485 487 7.509141 TCAGAAACAGCATGACATTTTCTAA 57.491 32.000 10.92 0.00 39.69 2.10
524 526 5.525012 TCAGCATTCATCCTAGAAAATGTCG 59.475 40.000 0.00 0.00 32.86 4.35
532 534 4.250464 TCCTAGAAAATGTCGCGATGTTT 58.750 39.130 14.06 13.83 0.00 2.83
534 536 5.022021 CCTAGAAAATGTCGCGATGTTTTC 58.978 41.667 32.31 32.31 39.58 2.29
542 544 1.193650 TCGCGATGTTTTCAAGGAACG 59.806 47.619 3.71 0.00 0.00 3.95
545 547 1.535462 CGATGTTTTCAAGGAACGGCT 59.465 47.619 0.00 0.00 0.00 5.52
568 570 6.532365 TTAAAATTGCCATCAAAACGTTCC 57.468 33.333 0.00 0.00 35.56 3.62
575 577 4.173256 GCCATCAAAACGTTCCCAAATAG 58.827 43.478 0.00 0.00 0.00 1.73
585 587 0.618458 TCCCAAATAGCACGCCTTCT 59.382 50.000 0.00 0.00 0.00 2.85
614 617 6.378582 ACGTTCGTTAGATAAGACGGTTTAA 58.621 36.000 0.00 0.00 39.59 1.52
717 2518 6.147000 GGTGAGAGATTTTGAGAGAGAAACAC 59.853 42.308 0.00 0.00 0.00 3.32
756 2557 4.446371 AGAAACAGACAGTGAGAAACAGG 58.554 43.478 0.00 0.00 0.00 4.00
853 2685 1.381872 CATCGTCCACCTCCCTCCT 60.382 63.158 0.00 0.00 0.00 3.69
858 2690 2.184631 TCCACCTCCCTCCTTCCCT 61.185 63.158 0.00 0.00 0.00 4.20
878 2729 8.458951 TTCCCTCTAAACTCTATAAAAACCCT 57.541 34.615 0.00 0.00 0.00 4.34
1078 2959 0.037882 CGAGGAAGACAAGCTGCTGA 60.038 55.000 1.35 0.00 0.00 4.26
1188 3069 1.898154 CTGGACCAACTACCTCCGG 59.102 63.158 0.00 0.00 0.00 5.14
1294 3175 0.745486 CGTCCATGCATGCTTCCTGA 60.745 55.000 21.69 9.00 0.00 3.86
1451 3614 3.984193 GAAGCTGCTCCGCATGGGT 62.984 63.158 1.00 0.00 38.13 4.51
1491 3654 4.662961 CACGCACCGACCTCAGCA 62.663 66.667 0.00 0.00 0.00 4.41
1499 3662 2.125391 GACCTCAGCATGCTCGCA 60.125 61.111 19.68 3.59 34.76 5.10
1597 3760 1.867919 CTCAAGCTCCAGGTCGACGT 61.868 60.000 9.92 7.31 0.00 4.34
1687 3856 1.131638 GGCATGGACTACCTCATGGA 58.868 55.000 0.00 0.00 40.59 3.41
1739 3932 0.389948 GCGGAGTCGACCAGAACATT 60.390 55.000 13.01 0.00 39.00 2.71
1764 3957 2.113986 AGCAGTGCCAGTGGAACC 59.886 61.111 17.46 2.28 37.80 3.62
1830 4023 2.703798 ATGCACAACATCAGCGGCC 61.704 57.895 0.00 0.00 31.52 6.13
1923 4134 0.736325 CAAGGTGACCGTCGATCCAC 60.736 60.000 0.00 0.00 0.00 4.02
1926 4137 1.592400 GGTGACCGTCGATCCACTGA 61.592 60.000 0.00 0.00 0.00 3.41
1938 4149 2.261361 CACTGATGGCCGACGACA 59.739 61.111 0.00 0.00 0.00 4.35
1939 4150 1.153568 CACTGATGGCCGACGACAT 60.154 57.895 0.00 0.00 0.00 3.06
1940 4151 1.141881 ACTGATGGCCGACGACATC 59.858 57.895 19.23 19.23 42.86 3.06
2177 4411 3.925913 CCACACCCAAATAATTTTGCTCG 59.074 43.478 0.00 0.00 40.77 5.03
2291 4537 5.034797 CACAATGCTTAGCTGACATGATTG 58.965 41.667 5.60 7.61 0.00 2.67
2293 4539 5.416639 ACAATGCTTAGCTGACATGATTGAA 59.583 36.000 14.96 0.00 0.00 2.69
2295 4541 6.710597 ATGCTTAGCTGACATGATTGAATT 57.289 33.333 5.60 0.00 0.00 2.17
2296 4542 6.127810 TGCTTAGCTGACATGATTGAATTC 57.872 37.500 5.60 0.00 0.00 2.17
2301 4554 6.680874 AGCTGACATGATTGAATTCTCTTC 57.319 37.500 7.05 1.89 0.00 2.87
2332 4585 0.037139 GCAAATGCCATGGCTGAACA 60.037 50.000 35.53 17.28 42.51 3.18
2397 4650 7.277396 AGAATGCCAAAAATAATCAGGAATGG 58.723 34.615 0.00 0.00 0.00 3.16
2431 4697 3.055963 TGGATTGGATGCACATTTTGGTC 60.056 43.478 0.00 0.00 0.00 4.02
2434 4703 1.539388 TGGATGCACATTTTGGTCGAC 59.461 47.619 7.13 7.13 0.00 4.20
2461 4731 7.972832 ATACCGAAGATGTGAAGTTTGTTTA 57.027 32.000 0.00 0.00 0.00 2.01
2471 4741 6.919721 TGTGAAGTTTGTTTATTGATAGGGC 58.080 36.000 0.00 0.00 0.00 5.19
2472 4742 6.071616 TGTGAAGTTTGTTTATTGATAGGGCC 60.072 38.462 0.00 0.00 0.00 5.80
2491 5092 1.956477 CCAAAAGGTGGTTGAGTCCAG 59.044 52.381 0.00 0.00 43.20 3.86
2540 5147 6.598753 AAAACAGGACATATACGCATGTAC 57.401 37.500 0.00 0.46 39.25 2.90
2544 5151 4.444388 CAGGACATATACGCATGTACACAC 59.556 45.833 0.00 0.00 41.51 3.82
2560 5167 3.141398 ACACACCACTCACTGCAATTAG 58.859 45.455 0.00 0.00 0.00 1.73
2634 5244 9.535878 GAGGGTAATATATGCAATAACTAGCTC 57.464 37.037 0.00 0.00 29.06 4.09
2653 5263 6.170675 AGCTCGTGACATAAAATCACTTTC 57.829 37.500 3.85 0.00 43.60 2.62
2693 5319 2.362397 AGTAGGTGTGTGACAGTGTGAG 59.638 50.000 0.00 0.00 0.00 3.51
2694 5320 1.195115 AGGTGTGTGACAGTGTGAGT 58.805 50.000 0.00 0.00 0.00 3.41
2695 5321 1.134699 AGGTGTGTGACAGTGTGAGTG 60.135 52.381 0.00 0.00 0.00 3.51
2696 5322 0.652592 GTGTGTGACAGTGTGAGTGC 59.347 55.000 0.00 0.00 0.00 4.40
2697 5323 0.805711 TGTGTGACAGTGTGAGTGCG 60.806 55.000 0.00 0.00 0.00 5.34
2698 5324 0.527600 GTGTGACAGTGTGAGTGCGA 60.528 55.000 0.00 0.00 0.00 5.10
2796 5425 4.058817 CGTGAAGAAGCTAAACTCAGGTT 58.941 43.478 0.00 0.00 38.90 3.50
2808 5437 6.803807 GCTAAACTCAGGTTGTCATTTGATTC 59.196 38.462 0.00 0.00 35.63 2.52
2870 5501 3.006967 AGTCCGCATTAGTCTTCACTGTT 59.993 43.478 0.00 0.00 33.62 3.16
2879 5510 9.534565 GCATTAGTCTTCACTGTTATCAATCTA 57.465 33.333 0.00 0.00 33.62 1.98
2945 5605 3.052036 GCATGGTTGCTACTGTGTTTTG 58.948 45.455 0.00 0.00 45.77 2.44
2949 5609 4.930963 TGGTTGCTACTGTGTTTTGATTG 58.069 39.130 0.00 0.00 0.00 2.67
2964 5624 9.262358 GTGTTTTGATTGTCTAACTAGAGAAGT 57.738 33.333 0.00 0.00 38.71 3.01
3016 5687 7.985634 CACATTAAGGTGTGTTTATAATGGC 57.014 36.000 12.02 0.00 43.43 4.40
3020 5691 9.429359 CATTAAGGTGTGTTTATAATGGCAAAA 57.571 29.630 0.00 0.00 32.79 2.44
3106 5777 5.184892 AGGAGATTAAGGACAGTTGCATT 57.815 39.130 0.00 0.00 0.00 3.56
3107 5778 5.574188 AGGAGATTAAGGACAGTTGCATTT 58.426 37.500 0.00 0.00 0.00 2.32
3117 5791 7.264373 AGGACAGTTGCATTTATAATGTAGC 57.736 36.000 0.00 0.00 0.00 3.58
3118 5792 7.056635 AGGACAGTTGCATTTATAATGTAGCT 58.943 34.615 0.00 0.00 0.00 3.32
3119 5793 7.557719 AGGACAGTTGCATTTATAATGTAGCTT 59.442 33.333 0.00 0.00 0.00 3.74
3135 5815 8.986477 AATGTAGCTTTTATTTGACATTGGTC 57.014 30.769 6.46 0.00 44.57 4.02
3162 5914 6.582677 TGACCAGAAGATATAGCTAGCTTC 57.417 41.667 24.88 14.78 46.20 3.86
3177 5934 6.749139 AGCTAGCTTCGATAATTCATGTGTA 58.251 36.000 12.68 0.00 0.00 2.90
3178 5935 7.382110 AGCTAGCTTCGATAATTCATGTGTAT 58.618 34.615 12.68 0.00 0.00 2.29
3181 5938 5.702670 AGCTTCGATAATTCATGTGTATGGG 59.297 40.000 0.00 0.00 34.97 4.00
3182 5939 5.106555 GCTTCGATAATTCATGTGTATGGGG 60.107 44.000 0.00 0.00 34.97 4.96
3195 5952 3.452627 GTGTATGGGGTTCTCAGTCAGAT 59.547 47.826 0.00 0.00 0.00 2.90
3211 5968 4.523173 AGTCAGATCGAGGTTACTTGTTGA 59.477 41.667 0.00 0.00 0.00 3.18
3244 6004 1.233019 AGCAGACACACATCACTTGC 58.767 50.000 0.00 0.00 0.00 4.01
3259 6024 4.651778 TCACTTGCACTAATTAACCAGCT 58.348 39.130 0.00 0.00 0.00 4.24
3265 6030 1.063942 ACTAATTAACCAGCTGGGGGC 60.064 52.381 35.42 0.00 42.91 5.80
3267 6032 1.518431 AATTAACCAGCTGGGGGCCT 61.518 55.000 35.42 12.66 42.91 5.19
3268 6033 1.937924 ATTAACCAGCTGGGGGCCTC 61.938 60.000 35.42 0.00 42.91 4.70
3272 6037 4.517934 CAGCTGGGGGCCTCCATG 62.518 72.222 29.07 19.14 43.05 3.66
3278 6049 0.403304 TGGGGGCCTCCATGATATGT 60.403 55.000 24.63 0.00 37.22 2.29
3280 6051 2.208872 GGGGGCCTCCATGATATGTAT 58.791 52.381 20.04 0.00 37.22 2.29
3281 6052 2.092212 GGGGGCCTCCATGATATGTATG 60.092 54.545 20.04 0.00 37.22 2.39
3283 6054 3.118112 GGGGCCTCCATGATATGTATGAG 60.118 52.174 0.84 0.00 35.00 2.90
3286 6057 5.366460 GGCCTCCATGATATGTATGAGATG 58.634 45.833 0.00 0.00 0.00 2.90
3335 6108 3.611766 ATGGGTTAGTTCGAGTTGGAG 57.388 47.619 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.120507 AGATCTAAGAGAGCCACACTTTTT 57.879 37.500 0.00 0.00 29.18 1.94
18 19 5.247110 TGAGATCTAAGAGAGCCACACTTTT 59.753 40.000 0.00 0.00 29.18 2.27
19 20 4.774726 TGAGATCTAAGAGAGCCACACTTT 59.225 41.667 0.00 0.00 29.18 2.66
20 21 4.348486 TGAGATCTAAGAGAGCCACACTT 58.652 43.478 0.00 0.00 29.18 3.16
21 22 3.974719 TGAGATCTAAGAGAGCCACACT 58.025 45.455 0.00 0.00 29.18 3.55
22 23 4.556501 CGATGAGATCTAAGAGAGCCACAC 60.557 50.000 0.00 0.00 29.18 3.82
23 24 3.567585 CGATGAGATCTAAGAGAGCCACA 59.432 47.826 0.00 0.00 29.18 4.17
24 25 3.818210 TCGATGAGATCTAAGAGAGCCAC 59.182 47.826 0.00 0.00 29.18 5.01
25 26 4.092116 TCGATGAGATCTAAGAGAGCCA 57.908 45.455 0.00 0.00 29.18 4.75
26 27 6.183360 CCTTATCGATGAGATCTAAGAGAGCC 60.183 46.154 18.12 0.00 40.66 4.70
27 28 6.597672 TCCTTATCGATGAGATCTAAGAGAGC 59.402 42.308 18.12 0.00 40.66 4.09
28 29 8.450964 GTTCCTTATCGATGAGATCTAAGAGAG 58.549 40.741 18.12 0.00 40.66 3.20
29 30 7.939588 TGTTCCTTATCGATGAGATCTAAGAGA 59.060 37.037 18.12 2.09 40.66 3.10
30 31 8.105097 TGTTCCTTATCGATGAGATCTAAGAG 57.895 38.462 18.12 0.00 40.66 2.85
31 32 8.642935 ATGTTCCTTATCGATGAGATCTAAGA 57.357 34.615 18.12 3.45 40.66 2.10
32 33 8.518702 TGATGTTCCTTATCGATGAGATCTAAG 58.481 37.037 18.12 6.79 40.66 2.18
33 34 8.409358 TGATGTTCCTTATCGATGAGATCTAA 57.591 34.615 18.12 4.83 40.66 2.10
34 35 8.409358 TTGATGTTCCTTATCGATGAGATCTA 57.591 34.615 18.12 7.50 40.66 1.98
35 36 6.907853 TGATGTTCCTTATCGATGAGATCT 57.092 37.500 18.12 0.00 40.66 2.75
36 37 7.953158 TTTGATGTTCCTTATCGATGAGATC 57.047 36.000 18.12 12.70 40.66 2.75
37 38 8.915057 ATTTTGATGTTCCTTATCGATGAGAT 57.085 30.769 18.12 3.97 43.19 2.75
38 39 7.986889 TGATTTTGATGTTCCTTATCGATGAGA 59.013 33.333 18.12 4.39 0.00 3.27
39 40 8.146479 TGATTTTGATGTTCCTTATCGATGAG 57.854 34.615 8.54 9.43 0.00 2.90
40 41 8.504812 TTGATTTTGATGTTCCTTATCGATGA 57.495 30.769 8.54 0.00 0.00 2.92
41 42 8.615211 TCTTGATTTTGATGTTCCTTATCGATG 58.385 33.333 8.54 0.00 0.00 3.84
42 43 8.737168 TCTTGATTTTGATGTTCCTTATCGAT 57.263 30.769 2.16 2.16 0.00 3.59
43 44 8.737168 ATCTTGATTTTGATGTTCCTTATCGA 57.263 30.769 0.00 0.00 0.00 3.59
62 63 9.788889 ACATGATGCTCTAAATGAATATCTTGA 57.211 29.630 0.00 0.00 32.67 3.02
77 78 9.955102 ATCACATAATTGTATACATGATGCTCT 57.045 29.630 13.88 2.77 33.76 4.09
106 107 8.736244 GCCCAAATATAGTTGAAGTTAACTTGA 58.264 33.333 25.17 14.72 41.01 3.02
107 108 7.973944 GGCCCAAATATAGTTGAAGTTAACTTG 59.026 37.037 25.17 7.03 41.01 3.16
108 109 7.893833 AGGCCCAAATATAGTTGAAGTTAACTT 59.106 33.333 20.67 20.67 41.01 2.66
109 110 7.339466 CAGGCCCAAATATAGTTGAAGTTAACT 59.661 37.037 14.27 1.12 43.03 2.24
110 111 7.122204 ACAGGCCCAAATATAGTTGAAGTTAAC 59.878 37.037 14.27 0.00 0.00 2.01
111 112 7.179269 ACAGGCCCAAATATAGTTGAAGTTAA 58.821 34.615 14.27 0.00 0.00 2.01
112 113 6.727394 ACAGGCCCAAATATAGTTGAAGTTA 58.273 36.000 14.27 0.00 0.00 2.24
113 114 5.580022 ACAGGCCCAAATATAGTTGAAGTT 58.420 37.500 14.27 0.00 0.00 2.66
114 115 5.193099 ACAGGCCCAAATATAGTTGAAGT 57.807 39.130 14.27 2.94 0.00 3.01
115 116 6.332630 CAAACAGGCCCAAATATAGTTGAAG 58.667 40.000 14.27 6.53 0.00 3.02
116 117 5.186797 CCAAACAGGCCCAAATATAGTTGAA 59.813 40.000 14.27 0.00 0.00 2.69
117 118 4.709397 CCAAACAGGCCCAAATATAGTTGA 59.291 41.667 14.27 0.00 0.00 3.18
118 119 5.009854 CCAAACAGGCCCAAATATAGTTG 57.990 43.478 5.94 5.94 0.00 3.16
133 134 3.977244 GTGTGGGCCGCCAAACAG 61.977 66.667 15.75 0.00 0.00 3.16
134 135 4.822628 TGTGTGGGCCGCCAAACA 62.823 61.111 15.75 12.25 35.78 2.83
135 136 3.281359 GATGTGTGGGCCGCCAAAC 62.281 63.158 15.75 9.59 0.00 2.93
136 137 2.988684 GATGTGTGGGCCGCCAAA 60.989 61.111 15.75 0.84 0.00 3.28
139 140 4.856801 ATCGATGTGTGGGCCGCC 62.857 66.667 15.75 0.00 0.00 6.13
140 141 3.272334 GATCGATGTGTGGGCCGC 61.272 66.667 10.94 10.94 0.00 6.53
141 142 2.588877 GGATCGATGTGTGGGCCG 60.589 66.667 0.54 0.00 0.00 6.13
142 143 2.588877 CGGATCGATGTGTGGGCC 60.589 66.667 0.54 0.00 0.00 5.80
143 144 3.272334 GCGGATCGATGTGTGGGC 61.272 66.667 0.54 0.00 0.00 5.36
144 145 1.884464 CTGCGGATCGATGTGTGGG 60.884 63.158 0.54 0.00 0.00 4.61
145 146 0.460109 TTCTGCGGATCGATGTGTGG 60.460 55.000 0.54 0.00 0.00 4.17
146 147 0.647410 GTTCTGCGGATCGATGTGTG 59.353 55.000 0.54 0.00 0.00 3.82
147 148 0.246360 TGTTCTGCGGATCGATGTGT 59.754 50.000 0.54 0.00 0.00 3.72
148 149 0.647410 GTGTTCTGCGGATCGATGTG 59.353 55.000 0.54 0.00 0.00 3.21
149 150 0.246360 TGTGTTCTGCGGATCGATGT 59.754 50.000 0.54 0.00 0.00 3.06
150 151 1.358877 TTGTGTTCTGCGGATCGATG 58.641 50.000 0.54 0.00 0.00 3.84
151 152 2.093306 TTTGTGTTCTGCGGATCGAT 57.907 45.000 0.00 0.00 0.00 3.59
152 153 1.798223 CTTTTGTGTTCTGCGGATCGA 59.202 47.619 0.00 0.00 0.00 3.59
153 154 1.798223 TCTTTTGTGTTCTGCGGATCG 59.202 47.619 0.00 0.00 0.00 3.69
154 155 3.181506 GGATCTTTTGTGTTCTGCGGATC 60.182 47.826 0.00 0.00 0.00 3.36
155 156 2.749621 GGATCTTTTGTGTTCTGCGGAT 59.250 45.455 0.00 0.00 0.00 4.18
156 157 2.151202 GGATCTTTTGTGTTCTGCGGA 58.849 47.619 0.00 0.00 0.00 5.54
157 158 1.135972 CGGATCTTTTGTGTTCTGCGG 60.136 52.381 0.00 0.00 0.00 5.69
158 159 1.135972 CCGGATCTTTTGTGTTCTGCG 60.136 52.381 0.00 0.00 0.00 5.18
159 160 1.401539 GCCGGATCTTTTGTGTTCTGC 60.402 52.381 5.05 0.00 0.00 4.26
160 161 1.135972 CGCCGGATCTTTTGTGTTCTG 60.136 52.381 5.05 0.00 0.00 3.02
161 162 1.156736 CGCCGGATCTTTTGTGTTCT 58.843 50.000 5.05 0.00 0.00 3.01
162 163 0.454452 GCGCCGGATCTTTTGTGTTC 60.454 55.000 5.05 0.00 0.00 3.18
163 164 1.579429 GCGCCGGATCTTTTGTGTT 59.421 52.632 5.05 0.00 0.00 3.32
164 165 2.677003 CGCGCCGGATCTTTTGTGT 61.677 57.895 5.05 0.00 0.00 3.72
165 166 2.098298 CGCGCCGGATCTTTTGTG 59.902 61.111 5.05 0.00 0.00 3.33
177 178 3.577313 GATCAAAGAGCCCGCGCC 61.577 66.667 0.00 0.00 34.57 6.53
178 179 1.922135 TTTGATCAAAGAGCCCGCGC 61.922 55.000 16.91 0.00 0.00 6.86
179 180 0.734889 ATTTGATCAAAGAGCCCGCG 59.265 50.000 24.17 0.00 33.32 6.46
180 181 2.682856 TGTATTTGATCAAAGAGCCCGC 59.317 45.455 24.17 9.64 33.32 6.13
181 182 4.818546 AGATGTATTTGATCAAAGAGCCCG 59.181 41.667 24.17 0.00 33.32 6.13
182 183 5.009410 CCAGATGTATTTGATCAAAGAGCCC 59.991 44.000 24.17 13.67 33.32 5.19
183 184 5.009410 CCCAGATGTATTTGATCAAAGAGCC 59.991 44.000 24.17 10.95 33.32 4.70
184 185 5.591877 ACCCAGATGTATTTGATCAAAGAGC 59.408 40.000 24.17 16.58 33.32 4.09
185 186 6.261826 GGACCCAGATGTATTTGATCAAAGAG 59.738 42.308 24.17 10.01 33.32 2.85
186 187 6.069440 AGGACCCAGATGTATTTGATCAAAGA 60.069 38.462 24.17 18.23 33.32 2.52
187 188 6.039047 CAGGACCCAGATGTATTTGATCAAAG 59.961 42.308 24.17 10.98 33.32 2.77
188 189 5.887598 CAGGACCCAGATGTATTTGATCAAA 59.112 40.000 22.52 22.52 34.46 2.69
189 190 5.191522 TCAGGACCCAGATGTATTTGATCAA 59.808 40.000 3.38 3.38 0.00 2.57
190 191 4.721274 TCAGGACCCAGATGTATTTGATCA 59.279 41.667 0.00 0.00 0.00 2.92
191 192 5.296151 TCAGGACCCAGATGTATTTGATC 57.704 43.478 0.00 0.00 0.00 2.92
192 193 5.715439 TTCAGGACCCAGATGTATTTGAT 57.285 39.130 0.00 0.00 0.00 2.57
193 194 5.715439 ATTCAGGACCCAGATGTATTTGA 57.285 39.130 0.00 0.00 0.00 2.69
194 195 6.263168 GGTAATTCAGGACCCAGATGTATTTG 59.737 42.308 0.00 0.00 0.00 2.32
195 196 6.069088 TGGTAATTCAGGACCCAGATGTATTT 60.069 38.462 0.00 0.00 34.58 1.40
196 197 5.431731 TGGTAATTCAGGACCCAGATGTATT 59.568 40.000 0.00 0.00 34.58 1.89
197 198 4.975147 TGGTAATTCAGGACCCAGATGTAT 59.025 41.667 0.00 0.00 34.58 2.29
198 199 4.367166 TGGTAATTCAGGACCCAGATGTA 58.633 43.478 0.00 0.00 34.58 2.29
199 200 3.189606 TGGTAATTCAGGACCCAGATGT 58.810 45.455 0.00 0.00 34.58 3.06
200 201 3.931907 TGGTAATTCAGGACCCAGATG 57.068 47.619 0.00 0.00 34.58 2.90
201 202 3.372025 GCTTGGTAATTCAGGACCCAGAT 60.372 47.826 1.34 0.00 31.55 2.90
202 203 2.026262 GCTTGGTAATTCAGGACCCAGA 60.026 50.000 1.34 0.00 31.55 3.86
203 204 2.290896 TGCTTGGTAATTCAGGACCCAG 60.291 50.000 0.00 0.00 34.58 4.45
204 205 1.707989 TGCTTGGTAATTCAGGACCCA 59.292 47.619 0.00 0.00 34.58 4.51
205 206 2.092323 GTGCTTGGTAATTCAGGACCC 58.908 52.381 0.00 0.00 34.58 4.46
206 207 1.737793 CGTGCTTGGTAATTCAGGACC 59.262 52.381 0.00 0.00 36.17 4.46
207 208 1.130561 GCGTGCTTGGTAATTCAGGAC 59.869 52.381 0.00 0.00 0.00 3.85
208 209 1.271108 TGCGTGCTTGGTAATTCAGGA 60.271 47.619 0.00 0.00 0.00 3.86
209 210 1.164411 TGCGTGCTTGGTAATTCAGG 58.836 50.000 0.00 0.00 0.00 3.86
210 211 2.789208 CATGCGTGCTTGGTAATTCAG 58.211 47.619 0.00 0.00 0.00 3.02
211 212 2.917701 CATGCGTGCTTGGTAATTCA 57.082 45.000 0.00 0.00 0.00 2.57
227 228 5.349543 AGACGTATGTGTATATGCATGCATG 59.650 40.000 37.43 22.70 37.82 4.06
228 229 5.482006 AGACGTATGTGTATATGCATGCAT 58.518 37.500 33.92 33.92 40.19 3.96
229 230 4.881920 AGACGTATGTGTATATGCATGCA 58.118 39.130 25.04 25.04 30.38 3.96
230 231 6.093404 ACTAGACGTATGTGTATATGCATGC 58.907 40.000 11.82 11.82 30.38 4.06
231 232 7.807907 TCAACTAGACGTATGTGTATATGCATG 59.192 37.037 10.16 0.00 30.38 4.06
232 233 7.882179 TCAACTAGACGTATGTGTATATGCAT 58.118 34.615 3.79 3.79 30.38 3.96
233 234 7.266922 TCAACTAGACGTATGTGTATATGCA 57.733 36.000 0.00 0.00 30.38 3.96
234 235 7.485277 GGATCAACTAGACGTATGTGTATATGC 59.515 40.741 0.00 0.00 30.38 3.14
235 236 8.512138 TGGATCAACTAGACGTATGTGTATATG 58.488 37.037 0.00 0.00 33.00 1.78
236 237 8.631480 TGGATCAACTAGACGTATGTGTATAT 57.369 34.615 0.00 0.00 0.00 0.86
237 238 8.631480 ATGGATCAACTAGACGTATGTGTATA 57.369 34.615 0.00 0.00 0.00 1.47
238 239 6.954487 TGGATCAACTAGACGTATGTGTAT 57.046 37.500 0.00 0.00 0.00 2.29
239 240 6.016527 GGATGGATCAACTAGACGTATGTGTA 60.017 42.308 0.00 0.00 0.00 2.90
240 241 5.221263 GGATGGATCAACTAGACGTATGTGT 60.221 44.000 0.00 0.00 0.00 3.72
241 242 5.221244 TGGATGGATCAACTAGACGTATGTG 60.221 44.000 0.00 0.00 0.00 3.21
242 243 4.893524 TGGATGGATCAACTAGACGTATGT 59.106 41.667 0.00 0.00 0.00 2.29
243 244 5.010112 AGTGGATGGATCAACTAGACGTATG 59.990 44.000 0.00 0.00 39.26 2.39
244 245 5.141182 AGTGGATGGATCAACTAGACGTAT 58.859 41.667 0.00 0.00 39.26 3.06
245 246 4.533815 AGTGGATGGATCAACTAGACGTA 58.466 43.478 0.00 0.00 39.26 3.57
246 247 3.366396 AGTGGATGGATCAACTAGACGT 58.634 45.455 0.00 0.00 39.26 4.34
247 248 4.115516 CAAGTGGATGGATCAACTAGACG 58.884 47.826 0.00 0.00 40.13 4.18
248 249 3.873952 GCAAGTGGATGGATCAACTAGAC 59.126 47.826 0.00 0.00 40.13 2.59
249 250 3.776969 AGCAAGTGGATGGATCAACTAGA 59.223 43.478 0.00 0.00 40.13 2.43
250 251 4.125703 GAGCAAGTGGATGGATCAACTAG 58.874 47.826 0.00 0.00 40.13 2.57
251 252 3.519107 TGAGCAAGTGGATGGATCAACTA 59.481 43.478 0.00 0.00 40.13 2.24
252 253 2.306805 TGAGCAAGTGGATGGATCAACT 59.693 45.455 0.00 0.00 42.80 3.16
253 254 2.715046 TGAGCAAGTGGATGGATCAAC 58.285 47.619 0.00 0.00 0.00 3.18
254 255 3.284617 CATGAGCAAGTGGATGGATCAA 58.715 45.455 0.00 0.00 0.00 2.57
255 256 2.240414 ACATGAGCAAGTGGATGGATCA 59.760 45.455 0.00 0.00 0.00 2.92
256 257 2.928334 ACATGAGCAAGTGGATGGATC 58.072 47.619 0.00 0.00 0.00 3.36
257 258 3.457380 ACTACATGAGCAAGTGGATGGAT 59.543 43.478 0.00 0.00 0.00 3.41
258 259 2.840038 ACTACATGAGCAAGTGGATGGA 59.160 45.455 0.00 0.00 0.00 3.41
259 260 3.272574 ACTACATGAGCAAGTGGATGG 57.727 47.619 0.00 0.00 0.00 3.51
260 261 3.798878 CGTACTACATGAGCAAGTGGATG 59.201 47.826 0.00 0.00 0.00 3.51
261 262 3.738281 GCGTACTACATGAGCAAGTGGAT 60.738 47.826 0.00 0.00 0.00 3.41
262 263 2.416836 GCGTACTACATGAGCAAGTGGA 60.417 50.000 0.00 0.00 0.00 4.02
263 264 1.927174 GCGTACTACATGAGCAAGTGG 59.073 52.381 0.00 0.00 0.00 4.00
264 265 2.606108 TGCGTACTACATGAGCAAGTG 58.394 47.619 0.00 0.00 34.66 3.16
265 266 3.190079 CATGCGTACTACATGAGCAAGT 58.810 45.455 16.64 0.00 46.33 3.16
266 267 2.541346 CCATGCGTACTACATGAGCAAG 59.459 50.000 21.07 6.22 46.33 4.01
267 268 2.167487 TCCATGCGTACTACATGAGCAA 59.833 45.455 21.07 6.64 46.33 3.91
268 269 1.754226 TCCATGCGTACTACATGAGCA 59.246 47.619 21.07 9.05 46.33 4.26
269 270 2.509052 TCCATGCGTACTACATGAGC 57.491 50.000 21.07 3.95 46.33 4.26
270 271 4.629634 TGTTTTCCATGCGTACTACATGAG 59.370 41.667 21.07 13.70 46.33 2.90
271 272 4.570930 TGTTTTCCATGCGTACTACATGA 58.429 39.130 21.07 9.26 46.33 3.07
272 273 4.937696 TGTTTTCCATGCGTACTACATG 57.062 40.909 15.30 15.30 43.67 3.21
273 274 4.757657 TGTTGTTTTCCATGCGTACTACAT 59.242 37.500 0.00 0.00 0.00 2.29
274 275 4.127907 TGTTGTTTTCCATGCGTACTACA 58.872 39.130 0.00 0.00 0.00 2.74
275 276 4.735662 TGTTGTTTTCCATGCGTACTAC 57.264 40.909 0.00 0.00 0.00 2.73
276 277 5.752892 TTTGTTGTTTTCCATGCGTACTA 57.247 34.783 0.00 0.00 0.00 1.82
277 278 4.640789 TTTGTTGTTTTCCATGCGTACT 57.359 36.364 0.00 0.00 0.00 2.73
278 279 4.208253 CCTTTTGTTGTTTTCCATGCGTAC 59.792 41.667 0.00 0.00 0.00 3.67
279 280 4.363999 CCTTTTGTTGTTTTCCATGCGTA 58.636 39.130 0.00 0.00 0.00 4.42
280 281 3.194062 CCTTTTGTTGTTTTCCATGCGT 58.806 40.909 0.00 0.00 0.00 5.24
281 282 2.032979 GCCTTTTGTTGTTTTCCATGCG 60.033 45.455 0.00 0.00 0.00 4.73
282 283 2.941720 TGCCTTTTGTTGTTTTCCATGC 59.058 40.909 0.00 0.00 0.00 4.06
283 284 4.394300 TGTTGCCTTTTGTTGTTTTCCATG 59.606 37.500 0.00 0.00 0.00 3.66
284 285 4.583871 TGTTGCCTTTTGTTGTTTTCCAT 58.416 34.783 0.00 0.00 0.00 3.41
285 286 4.008074 TGTTGCCTTTTGTTGTTTTCCA 57.992 36.364 0.00 0.00 0.00 3.53
286 287 4.693095 TCTTGTTGCCTTTTGTTGTTTTCC 59.307 37.500 0.00 0.00 0.00 3.13
287 288 5.178438 TGTCTTGTTGCCTTTTGTTGTTTTC 59.822 36.000 0.00 0.00 0.00 2.29
288 289 5.059833 TGTCTTGTTGCCTTTTGTTGTTTT 58.940 33.333 0.00 0.00 0.00 2.43
289 290 4.636249 TGTCTTGTTGCCTTTTGTTGTTT 58.364 34.783 0.00 0.00 0.00 2.83
290 291 4.264460 TGTCTTGTTGCCTTTTGTTGTT 57.736 36.364 0.00 0.00 0.00 2.83
291 292 3.951775 TGTCTTGTTGCCTTTTGTTGT 57.048 38.095 0.00 0.00 0.00 3.32
292 293 4.268405 GTGATGTCTTGTTGCCTTTTGTTG 59.732 41.667 0.00 0.00 0.00 3.33
293 294 4.081752 TGTGATGTCTTGTTGCCTTTTGTT 60.082 37.500 0.00 0.00 0.00 2.83
294 295 3.446873 TGTGATGTCTTGTTGCCTTTTGT 59.553 39.130 0.00 0.00 0.00 2.83
295 296 3.798337 GTGTGATGTCTTGTTGCCTTTTG 59.202 43.478 0.00 0.00 0.00 2.44
296 297 3.446873 TGTGTGATGTCTTGTTGCCTTTT 59.553 39.130 0.00 0.00 0.00 2.27
297 298 3.023119 TGTGTGATGTCTTGTTGCCTTT 58.977 40.909 0.00 0.00 0.00 3.11
298 299 2.358898 GTGTGTGATGTCTTGTTGCCTT 59.641 45.455 0.00 0.00 0.00 4.35
299 300 1.949525 GTGTGTGATGTCTTGTTGCCT 59.050 47.619 0.00 0.00 0.00 4.75
300 301 1.675483 TGTGTGTGATGTCTTGTTGCC 59.325 47.619 0.00 0.00 0.00 4.52
301 302 3.631145 ATGTGTGTGATGTCTTGTTGC 57.369 42.857 0.00 0.00 0.00 4.17
302 303 4.701361 CGTATGTGTGTGATGTCTTGTTG 58.299 43.478 0.00 0.00 0.00 3.33
303 304 3.186409 GCGTATGTGTGTGATGTCTTGTT 59.814 43.478 0.00 0.00 0.00 2.83
304 305 2.736721 GCGTATGTGTGTGATGTCTTGT 59.263 45.455 0.00 0.00 0.00 3.16
305 306 2.094258 GGCGTATGTGTGTGATGTCTTG 59.906 50.000 0.00 0.00 0.00 3.02
306 307 2.289382 TGGCGTATGTGTGTGATGTCTT 60.289 45.455 0.00 0.00 0.00 3.01
307 308 1.275010 TGGCGTATGTGTGTGATGTCT 59.725 47.619 0.00 0.00 0.00 3.41
308 309 1.660607 CTGGCGTATGTGTGTGATGTC 59.339 52.381 0.00 0.00 0.00 3.06
309 310 1.725641 CTGGCGTATGTGTGTGATGT 58.274 50.000 0.00 0.00 0.00 3.06
310 311 0.374758 GCTGGCGTATGTGTGTGATG 59.625 55.000 0.00 0.00 0.00 3.07
311 312 0.036483 TGCTGGCGTATGTGTGTGAT 60.036 50.000 0.00 0.00 0.00 3.06
312 313 0.036483 ATGCTGGCGTATGTGTGTGA 60.036 50.000 0.00 0.00 0.00 3.58
313 314 1.650825 TATGCTGGCGTATGTGTGTG 58.349 50.000 0.00 0.00 0.00 3.82
314 315 2.103094 AGATATGCTGGCGTATGTGTGT 59.897 45.455 11.43 0.00 0.00 3.72
315 316 2.759191 AGATATGCTGGCGTATGTGTG 58.241 47.619 11.43 0.00 0.00 3.82
316 317 4.307432 GTTAGATATGCTGGCGTATGTGT 58.693 43.478 11.43 0.68 0.00 3.72
317 318 3.364920 CGTTAGATATGCTGGCGTATGTG 59.635 47.826 11.43 0.00 0.00 3.21
318 319 3.254903 TCGTTAGATATGCTGGCGTATGT 59.745 43.478 11.43 10.11 0.00 2.29
319 320 3.833442 TCGTTAGATATGCTGGCGTATG 58.167 45.455 11.43 0.00 0.00 2.39
320 321 4.514781 TTCGTTAGATATGCTGGCGTAT 57.485 40.909 6.98 6.98 0.00 3.06
321 322 3.994204 TTCGTTAGATATGCTGGCGTA 57.006 42.857 0.00 0.00 0.00 4.42
322 323 2.864343 GTTTCGTTAGATATGCTGGCGT 59.136 45.455 0.00 0.00 0.00 5.68
323 324 2.863740 TGTTTCGTTAGATATGCTGGCG 59.136 45.455 0.00 0.00 0.00 5.69
324 325 4.588278 GTTGTTTCGTTAGATATGCTGGC 58.412 43.478 0.00 0.00 0.00 4.85
325 326 4.328983 ACGTTGTTTCGTTAGATATGCTGG 59.671 41.667 0.00 0.00 41.37 4.85
326 327 5.450376 ACGTTGTTTCGTTAGATATGCTG 57.550 39.130 0.00 0.00 41.37 4.41
327 328 7.618442 CAATACGTTGTTTCGTTAGATATGCT 58.382 34.615 0.00 0.00 43.80 3.79
328 329 6.353582 GCAATACGTTGTTTCGTTAGATATGC 59.646 38.462 0.00 0.00 43.80 3.14
329 330 6.564984 CGCAATACGTTGTTTCGTTAGATATG 59.435 38.462 0.00 0.00 43.80 1.78
330 331 6.291955 CCGCAATACGTTGTTTCGTTAGATAT 60.292 38.462 0.00 0.00 43.80 1.63
331 332 5.004630 CCGCAATACGTTGTTTCGTTAGATA 59.995 40.000 0.00 0.00 43.80 1.98
332 333 4.201647 CCGCAATACGTTGTTTCGTTAGAT 60.202 41.667 0.00 0.00 43.80 1.98
333 334 3.121611 CCGCAATACGTTGTTTCGTTAGA 59.878 43.478 0.00 0.00 43.80 2.10
334 335 3.400995 CCGCAATACGTTGTTTCGTTAG 58.599 45.455 0.00 0.00 43.80 2.34
335 336 2.411289 GCCGCAATACGTTGTTTCGTTA 60.411 45.455 0.00 0.00 43.80 3.18
336 337 1.660896 GCCGCAATACGTTGTTTCGTT 60.661 47.619 0.00 0.00 43.80 3.85
337 338 0.110554 GCCGCAATACGTTGTTTCGT 60.111 50.000 0.00 0.00 45.97 3.85
338 339 0.110599 TGCCGCAATACGTTGTTTCG 60.111 50.000 0.00 0.00 41.42 3.46
339 340 2.039327 TTGCCGCAATACGTTGTTTC 57.961 45.000 0.38 0.00 41.42 2.78
340 341 2.493713 TTTGCCGCAATACGTTGTTT 57.506 40.000 6.64 0.00 41.42 2.83
341 342 2.493713 TTTTGCCGCAATACGTTGTT 57.506 40.000 6.64 0.00 41.42 2.83
342 343 2.493713 TTTTTGCCGCAATACGTTGT 57.506 40.000 6.64 0.00 41.42 3.32
363 364 9.289782 GTCAGCCAGATATATCATTACCTTTTT 57.710 33.333 15.08 0.00 0.00 1.94
364 365 7.604164 CGTCAGCCAGATATATCATTACCTTTT 59.396 37.037 15.08 0.00 0.00 2.27
365 366 7.099764 CGTCAGCCAGATATATCATTACCTTT 58.900 38.462 15.08 0.00 0.00 3.11
366 367 6.211584 ACGTCAGCCAGATATATCATTACCTT 59.788 38.462 15.08 0.00 0.00 3.50
367 368 5.717178 ACGTCAGCCAGATATATCATTACCT 59.283 40.000 15.08 1.40 0.00 3.08
368 369 5.967088 ACGTCAGCCAGATATATCATTACC 58.033 41.667 15.08 0.00 0.00 2.85
369 370 6.251589 CGAACGTCAGCCAGATATATCATTAC 59.748 42.308 15.08 1.82 0.00 1.89
370 371 6.322491 CGAACGTCAGCCAGATATATCATTA 58.678 40.000 15.08 0.00 0.00 1.90
371 372 5.164233 CGAACGTCAGCCAGATATATCATT 58.836 41.667 15.08 0.00 0.00 2.57
372 373 4.738124 CGAACGTCAGCCAGATATATCAT 58.262 43.478 15.08 0.00 0.00 2.45
373 374 3.611766 GCGAACGTCAGCCAGATATATCA 60.612 47.826 15.08 0.00 0.00 2.15
374 375 2.917971 GCGAACGTCAGCCAGATATATC 59.082 50.000 4.42 4.42 0.00 1.63
375 376 2.558795 AGCGAACGTCAGCCAGATATAT 59.441 45.455 10.96 0.00 0.00 0.86
376 377 1.954382 AGCGAACGTCAGCCAGATATA 59.046 47.619 10.96 0.00 0.00 0.86
377 378 0.747255 AGCGAACGTCAGCCAGATAT 59.253 50.000 10.96 0.00 0.00 1.63
378 379 1.385528 TAGCGAACGTCAGCCAGATA 58.614 50.000 10.96 0.00 0.00 1.98
379 380 0.530744 TTAGCGAACGTCAGCCAGAT 59.469 50.000 10.96 0.00 0.00 2.90
380 381 0.109272 CTTAGCGAACGTCAGCCAGA 60.109 55.000 10.96 0.00 0.00 3.86
381 382 0.109272 TCTTAGCGAACGTCAGCCAG 60.109 55.000 10.96 8.17 0.00 4.85
382 383 0.109272 CTCTTAGCGAACGTCAGCCA 60.109 55.000 10.96 0.00 0.00 4.75
383 384 0.170561 TCTCTTAGCGAACGTCAGCC 59.829 55.000 10.96 0.00 0.00 4.85
384 385 1.540407 CTCTCTTAGCGAACGTCAGC 58.460 55.000 7.06 7.06 0.00 4.26
385 386 1.202200 CCCTCTCTTAGCGAACGTCAG 60.202 57.143 0.00 0.00 0.00 3.51
386 387 0.809385 CCCTCTCTTAGCGAACGTCA 59.191 55.000 0.00 0.00 0.00 4.35
387 388 0.810016 ACCCTCTCTTAGCGAACGTC 59.190 55.000 0.00 0.00 0.00 4.34
388 389 0.526662 CACCCTCTCTTAGCGAACGT 59.473 55.000 0.00 0.00 0.00 3.99
389 390 0.179134 CCACCCTCTCTTAGCGAACG 60.179 60.000 0.00 0.00 0.00 3.95
390 391 0.460459 GCCACCCTCTCTTAGCGAAC 60.460 60.000 0.00 0.00 0.00 3.95
391 392 0.902984 TGCCACCCTCTCTTAGCGAA 60.903 55.000 0.00 0.00 0.00 4.70
397 398 2.893489 GTTTGAAATGCCACCCTCTCTT 59.107 45.455 0.00 0.00 0.00 2.85
415 416 5.879777 ACTAAAACTGCCAGCAAAAATGTTT 59.120 32.000 0.00 0.00 0.00 2.83
418 419 5.294060 ACAACTAAAACTGCCAGCAAAAATG 59.706 36.000 0.00 0.00 0.00 2.32
419 420 5.294060 CACAACTAAAACTGCCAGCAAAAAT 59.706 36.000 0.00 0.00 0.00 1.82
432 433 4.142038 ACCACCTCCATCACAACTAAAAC 58.858 43.478 0.00 0.00 0.00 2.43
464 466 7.025963 CCTCTTAGAAAATGTCATGCTGTTTC 58.974 38.462 0.00 1.09 0.00 2.78
475 477 7.486407 AAATTGCCATCCTCTTAGAAAATGT 57.514 32.000 3.78 0.00 0.00 2.71
485 487 2.811410 TGCTGAAAATTGCCATCCTCT 58.189 42.857 0.00 0.00 0.00 3.69
524 526 1.963747 CCGTTCCTTGAAAACATCGC 58.036 50.000 0.00 0.00 0.00 4.58
532 534 4.303282 GCAATTTTAAGCCGTTCCTTGAA 58.697 39.130 0.00 0.00 0.00 2.69
534 536 2.993220 GGCAATTTTAAGCCGTTCCTTG 59.007 45.455 0.00 0.00 41.70 3.61
545 547 5.467063 GGGAACGTTTTGATGGCAATTTTAA 59.533 36.000 0.46 0.00 33.25 1.52
568 570 2.030457 CGTTAGAAGGCGTGCTATTTGG 59.970 50.000 0.00 0.00 0.00 3.28
575 577 1.280206 AACGTCGTTAGAAGGCGTGC 61.280 55.000 9.30 0.00 35.88 5.34
717 2518 2.613026 TCTCTCTCTAGCGACCTCTG 57.387 55.000 0.00 0.00 0.00 3.35
756 2557 1.542547 CCTCTCTCTCTAGCGACCTCC 60.543 61.905 0.00 0.00 0.00 4.30
853 2685 8.458951 AGGGTTTTTATAGAGTTTAGAGGGAA 57.541 34.615 0.00 0.00 0.00 3.97
878 2729 1.659022 TTCGTTGGGGTGGATAGGAA 58.341 50.000 0.00 0.00 0.00 3.36
1164 3045 1.255667 GGTAGTTGGTCCAGCGGAGA 61.256 60.000 0.00 0.00 29.39 3.71
1294 3175 7.216973 AGTCGAAGAAGATTTGTAGTGTAGT 57.783 36.000 0.00 0.00 39.69 2.73
1451 3614 2.751036 TGCGTGACGGGGTCGATA 60.751 61.111 7.25 0.00 40.11 2.92
1475 3638 3.695606 ATGCTGAGGTCGGTGCGT 61.696 61.111 0.00 0.00 0.00 5.24
1597 3760 2.669569 GCAGCTGGAACTTGGCGA 60.670 61.111 17.12 0.00 0.00 5.54
1677 3846 1.109920 GCGAGGAGCTCCATGAGGTA 61.110 60.000 33.90 0.00 40.67 3.08
1764 3957 1.580942 CCGGCAGGTTGTTCATGTG 59.419 57.895 0.00 0.00 0.00 3.21
1830 4023 2.720758 CGCTGAAGCCGTCGAACAG 61.721 63.158 0.00 0.00 37.91 3.16
1899 4092 2.741092 GACGGTCACCTTGCTCCA 59.259 61.111 2.62 0.00 0.00 3.86
1907 4100 1.153823 CAGTGGATCGACGGTCACC 60.154 63.158 10.81 8.70 0.00 4.02
1923 4134 1.946156 CGATGTCGTCGGCCATCAG 60.946 63.158 19.12 11.65 46.47 2.90
1938 4149 1.470098 GCCATTGTTCTTGCACTCGAT 59.530 47.619 0.00 0.00 0.00 3.59
1939 4150 0.874390 GCCATTGTTCTTGCACTCGA 59.126 50.000 0.00 0.00 0.00 4.04
1940 4151 0.453282 CGCCATTGTTCTTGCACTCG 60.453 55.000 0.00 0.00 0.00 4.18
2150 4380 5.570439 GCAAAATTATTTGGGTGTGGATGGA 60.570 40.000 3.75 0.00 44.93 3.41
2152 4382 5.490159 AGCAAAATTATTTGGGTGTGGATG 58.510 37.500 0.00 0.00 44.93 3.51
2153 4383 5.624281 CGAGCAAAATTATTTGGGTGTGGAT 60.624 40.000 1.09 0.00 44.93 3.41
2154 4384 4.321601 CGAGCAAAATTATTTGGGTGTGGA 60.322 41.667 1.09 0.00 44.93 4.02
2155 4385 3.925913 CGAGCAAAATTATTTGGGTGTGG 59.074 43.478 1.09 0.00 44.93 4.17
2157 4387 4.864704 ACGAGCAAAATTATTTGGGTGT 57.135 36.364 1.09 0.00 44.93 4.16
2295 4541 7.538575 GCATTTGCCTACATAAAAAGAAGAGA 58.461 34.615 0.00 0.00 34.31 3.10
2296 4542 7.746526 GCATTTGCCTACATAAAAAGAAGAG 57.253 36.000 0.00 0.00 34.31 2.85
2332 4585 3.646162 TCTACCCATCACAACTCACTTGT 59.354 43.478 0.00 0.00 44.51 3.16
2397 4650 5.359576 TGCATCCAATCCAACAATTAGTACC 59.640 40.000 0.00 0.00 0.00 3.34
2431 4697 3.159353 TCACATCTTCGGTATTGGTCG 57.841 47.619 0.00 0.00 0.00 4.79
2434 4703 5.181245 ACAAACTTCACATCTTCGGTATTGG 59.819 40.000 0.00 0.00 0.00 3.16
2461 4731 2.750814 CCACCTTTTGGCCCTATCAAT 58.249 47.619 0.00 0.00 45.59 2.57
2471 4741 6.749809 AGTCTGGACTCAACCACCTTTTGG 62.750 50.000 0.00 0.00 44.60 3.28
2472 4742 2.618709 GTCTGGACTCAACCACCTTTTG 59.381 50.000 0.00 0.00 35.91 2.44
2533 5140 1.800586 CAGTGAGTGGTGTGTACATGC 59.199 52.381 0.00 0.00 0.00 4.06
2537 5144 1.948104 TTGCAGTGAGTGGTGTGTAC 58.052 50.000 0.00 0.00 0.00 2.90
2539 5146 2.057137 AATTGCAGTGAGTGGTGTGT 57.943 45.000 0.00 0.00 0.00 3.72
2540 5147 3.141398 ACTAATTGCAGTGAGTGGTGTG 58.859 45.455 0.00 0.00 0.00 3.82
2622 5232 8.817100 TGATTTTATGTCACGAGCTAGTTATTG 58.183 33.333 0.00 0.00 0.00 1.90
2754 5383 4.251268 ACGCAAGGGAAAGTTCATACTAC 58.749 43.478 0.00 0.00 46.39 2.73
2769 5398 2.808543 AGTTTAGCTTCTTCACGCAAGG 59.191 45.455 0.00 0.00 46.39 3.61
2828 5458 1.414550 TCACAAGACCAACATCGTGGA 59.585 47.619 0.00 0.00 41.65 4.02
2964 5624 5.781306 TGGAAGACCCACAGTGTAACTATAA 59.219 40.000 0.00 0.00 43.53 0.98
3084 5755 4.851639 ATGCAACTGTCCTTAATCTCCT 57.148 40.909 0.00 0.00 0.00 3.69
3085 5756 5.904362 AAATGCAACTGTCCTTAATCTCC 57.096 39.130 0.00 0.00 0.00 3.71
3091 5762 8.836413 GCTACATTATAAATGCAACTGTCCTTA 58.164 33.333 0.00 0.00 0.00 2.69
3094 5765 7.264373 AGCTACATTATAAATGCAACTGTCC 57.736 36.000 0.00 0.00 0.00 4.02
3116 5790 4.485163 AGCGACCAATGTCAAATAAAAGC 58.515 39.130 0.00 0.00 41.85 3.51
3117 5791 6.088085 GTCAAGCGACCAATGTCAAATAAAAG 59.912 38.462 0.00 0.00 41.85 2.27
3118 5792 5.918011 GTCAAGCGACCAATGTCAAATAAAA 59.082 36.000 0.00 0.00 41.85 1.52
3119 5793 5.457140 GTCAAGCGACCAATGTCAAATAAA 58.543 37.500 0.00 0.00 41.85 1.40
3133 5813 3.984633 GCTATATCTTCTGGTCAAGCGAC 59.015 47.826 0.00 0.00 41.80 5.19
3135 5815 4.250116 AGCTATATCTTCTGGTCAAGCG 57.750 45.455 0.00 0.00 34.01 4.68
3142 5822 5.888691 TCGAAGCTAGCTATATCTTCTGG 57.111 43.478 19.70 0.73 33.74 3.86
3162 5914 5.997746 AGAACCCCATACACATGAATTATCG 59.002 40.000 0.00 0.00 33.67 2.92
3171 5923 3.181329 TGACTGAGAACCCCATACACAT 58.819 45.455 0.00 0.00 0.00 3.21
3177 5934 1.759445 CGATCTGACTGAGAACCCCAT 59.241 52.381 0.00 0.00 33.12 4.00
3178 5935 1.186200 CGATCTGACTGAGAACCCCA 58.814 55.000 0.00 0.00 33.12 4.96
3181 5938 2.096248 ACCTCGATCTGACTGAGAACC 58.904 52.381 8.99 0.00 33.12 3.62
3182 5939 3.859411 AACCTCGATCTGACTGAGAAC 57.141 47.619 8.99 0.00 33.12 3.01
3195 5952 3.893200 TCTCCTTCAACAAGTAACCTCGA 59.107 43.478 0.00 0.00 0.00 4.04
3211 5968 4.284490 TGTGTCTGCTAGTCAATTCTCCTT 59.716 41.667 0.00 0.00 0.00 3.36
3244 6004 2.654863 CCCCCAGCTGGTTAATTAGTG 58.345 52.381 30.63 12.11 0.00 2.74
3259 6024 0.403304 ACATATCATGGAGGCCCCCA 60.403 55.000 9.14 9.14 41.05 4.96
3265 6030 5.985911 TGCATCTCATACATATCATGGAGG 58.014 41.667 0.00 0.00 33.60 4.30
3267 6032 5.046159 TGCTGCATCTCATACATATCATGGA 60.046 40.000 0.00 0.00 33.60 3.41
3268 6033 5.183228 TGCTGCATCTCATACATATCATGG 58.817 41.667 0.00 0.00 33.60 3.66
3269 6034 6.719365 CATGCTGCATCTCATACATATCATG 58.281 40.000 13.10 0.00 0.00 3.07
3270 6035 5.297029 GCATGCTGCATCTCATACATATCAT 59.703 40.000 13.10 0.00 44.26 2.45
3271 6036 4.634443 GCATGCTGCATCTCATACATATCA 59.366 41.667 13.10 0.00 44.26 2.15
3272 6037 5.158101 GCATGCTGCATCTCATACATATC 57.842 43.478 13.10 0.00 44.26 1.63
3286 6057 2.842208 TTATACCGTTTGCATGCTGC 57.158 45.000 20.33 7.88 45.29 5.25
3318 6091 3.257624 TCCTTCTCCAACTCGAACTAACC 59.742 47.826 0.00 0.00 0.00 2.85
3326 6099 1.215647 CCCGTCCTTCTCCAACTCG 59.784 63.158 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.