Multiple sequence alignment - TraesCS7D01G026900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G026900 chr7D 100.000 3617 0 0 1 3617 13068520 13064904 0.000000e+00 6680
1 TraesCS7D01G026900 chr7D 88.593 1315 114 24 1622 2925 13097810 13096521 0.000000e+00 1565
2 TraesCS7D01G026900 chr7D 85.683 1376 125 37 1604 2925 13029186 13027829 0.000000e+00 1384
3 TraesCS7D01G026900 chr7D 98.859 526 6 0 3092 3617 552301572 552302097 0.000000e+00 939
4 TraesCS7D01G026900 chr7D 92.204 667 25 10 691 1332 13029844 13029180 0.000000e+00 918
5 TraesCS7D01G026900 chr7D 97.154 527 14 1 3091 3617 604060133 604060658 0.000000e+00 889
6 TraesCS7D01G026900 chr7D 84.823 593 50 23 692 1271 13098457 13097892 8.770000e-156 560
7 TraesCS7D01G026900 chr7D 89.298 299 20 4 1 287 13030432 13030134 7.380000e-97 364
8 TraesCS7D01G026900 chr7D 82.094 363 25 10 361 698 13030113 13029766 1.280000e-69 274
9 TraesCS7D01G026900 chr7D 94.872 156 7 1 2937 3091 13027785 13027630 3.610000e-60 243
10 TraesCS7D01G026900 chr7A 88.631 1337 104 28 1610 2925 12455004 12453695 0.000000e+00 1583
11 TraesCS7D01G026900 chr7A 86.235 1373 121 30 1604 2925 12429321 12427966 0.000000e+00 1426
12 TraesCS7D01G026900 chr7A 89.395 1075 87 12 1622 2689 12652387 12651333 0.000000e+00 1328
13 TraesCS7D01G026900 chr7A 87.500 744 48 26 624 1341 12430032 12429308 0.000000e+00 817
14 TraesCS7D01G026900 chr7A 87.500 728 41 21 630 1334 12455706 12455006 0.000000e+00 795
15 TraesCS7D01G026900 chr7A 87.879 693 52 12 1 685 12430565 12429897 0.000000e+00 785
16 TraesCS7D01G026900 chr7A 83.642 593 59 25 692 1271 12653025 12652458 1.150000e-144 523
17 TraesCS7D01G026900 chr7A 92.446 278 12 4 1335 1604 20692895 20692619 4.380000e-104 388
18 TraesCS7D01G026900 chr7A 84.226 336 41 10 2762 3091 12650928 12650599 2.100000e-82 316
19 TraesCS7D01G026900 chr7A 95.270 148 6 1 2944 3090 12427915 12427768 2.170000e-57 233
20 TraesCS7D01G026900 chr7A 93.220 118 5 1 437 551 12457565 12457448 1.730000e-38 171
21 TraesCS7D01G026900 chr4A 86.052 1355 122 31 1615 2925 724782963 724784294 0.000000e+00 1393
22 TraesCS7D01G026900 chr4A 85.557 1274 117 33 1672 2925 724399909 724398683 0.000000e+00 1271
23 TraesCS7D01G026900 chr4A 89.988 809 50 16 1622 2426 724579769 724578988 0.000000e+00 1016
24 TraesCS7D01G026900 chr4A 87.883 685 37 19 655 1326 724782310 724782961 0.000000e+00 763
25 TraesCS7D01G026900 chr4A 84.921 630 46 25 655 1271 724400583 724399990 3.110000e-165 592
26 TraesCS7D01G026900 chr4A 84.335 632 42 24 109 698 724781798 724782414 1.890000e-157 566
27 TraesCS7D01G026900 chr4A 94.526 274 15 0 998 1271 724580124 724579851 1.200000e-114 424
28 TraesCS7D01G026900 chr4A 92.949 156 10 1 2937 3091 724784338 724784493 3.630000e-55 226
29 TraesCS7D01G026900 chr4A 85.354 198 7 8 506 698 724400648 724400468 6.170000e-43 185
30 TraesCS7D01G026900 chr4A 84.328 134 19 2 2927 3059 724398645 724398513 2.930000e-26 130
31 TraesCS7D01G026900 chr4A 81.437 167 21 5 2927 3091 724578581 724578423 1.050000e-25 128
32 TraesCS7D01G026900 chr4A 84.483 116 5 3 361 476 724400747 724400645 6.390000e-18 102
33 TraesCS7D01G026900 chr4D 85.133 1352 154 21 1604 2925 506606782 506605448 0.000000e+00 1339
34 TraesCS7D01G026900 chr4D 91.154 667 23 15 689 1332 506607429 506606776 0.000000e+00 872
35 TraesCS7D01G026900 chr4D 94.231 156 8 1 2937 3091 506605404 506605249 1.680000e-58 237
36 TraesCS7D01G026900 chr5D 98.864 528 6 0 3090 3617 372104929 372104402 0.000000e+00 942
37 TraesCS7D01G026900 chr5D 98.106 528 10 0 3090 3617 480019013 480019540 0.000000e+00 920
38 TraesCS7D01G026900 chr3D 98.106 528 10 0 3090 3617 94245174 94244647 0.000000e+00 920
39 TraesCS7D01G026900 chr3D 90.370 270 25 1 1335 1604 607320968 607320700 1.600000e-93 353
40 TraesCS7D01G026900 chr2B 96.774 527 17 0 3091 3617 17685016 17685542 0.000000e+00 880
41 TraesCS7D01G026900 chr6A 96.774 527 15 2 3090 3616 51469524 51469000 0.000000e+00 878
42 TraesCS7D01G026900 chr6A 96.408 529 17 2 3090 3617 599935019 599934492 0.000000e+00 870
43 TraesCS7D01G026900 chr6A 93.617 282 10 3 1333 1606 13976368 13976649 7.230000e-112 414
44 TraesCS7D01G026900 chr3A 96.591 528 18 0 3090 3617 686571209 686570682 0.000000e+00 876
45 TraesCS7D01G026900 chr5A 94.565 276 7 2 1336 1603 174262774 174262499 1.550000e-113 420
46 TraesCS7D01G026900 chr5B 93.116 276 15 3 1331 1604 697376687 697376414 5.630000e-108 401
47 TraesCS7D01G026900 chr1A 89.734 263 27 0 1336 1598 541655421 541655683 1.610000e-88 337
48 TraesCS7D01G026900 chr4B 87.591 274 32 2 1332 1604 3697177 3697449 2.100000e-82 316
49 TraesCS7D01G026900 chr4B 87.591 274 32 2 1332 1604 3708696 3708968 2.100000e-82 316
50 TraesCS7D01G026900 chr6B 87.868 272 26 6 1335 1604 43070353 43070619 2.710000e-81 313


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G026900 chr7D 13064904 13068520 3616 True 6680.000000 6680 100.000000 1 3617 1 chr7D.!!$R1 3616
1 TraesCS7D01G026900 chr7D 13096521 13098457 1936 True 1062.500000 1565 86.708000 692 2925 2 chr7D.!!$R3 2233
2 TraesCS7D01G026900 chr7D 552301572 552302097 525 False 939.000000 939 98.859000 3092 3617 1 chr7D.!!$F1 525
3 TraesCS7D01G026900 chr7D 604060133 604060658 525 False 889.000000 889 97.154000 3091 3617 1 chr7D.!!$F2 526
4 TraesCS7D01G026900 chr7D 13027630 13030432 2802 True 636.600000 1384 88.830200 1 3091 5 chr7D.!!$R2 3090
5 TraesCS7D01G026900 chr7A 12453695 12457565 3870 True 849.666667 1583 89.783667 437 2925 3 chr7A.!!$R3 2488
6 TraesCS7D01G026900 chr7A 12427768 12430565 2797 True 815.250000 1426 89.221000 1 3090 4 chr7A.!!$R2 3089
7 TraesCS7D01G026900 chr7A 12650599 12653025 2426 True 722.333333 1328 85.754333 692 3091 3 chr7A.!!$R4 2399
8 TraesCS7D01G026900 chr4A 724781798 724784493 2695 False 737.000000 1393 87.804750 109 3091 4 chr4A.!!$F1 2982
9 TraesCS7D01G026900 chr4A 724578423 724580124 1701 True 522.666667 1016 88.650333 998 3091 3 chr4A.!!$R2 2093
10 TraesCS7D01G026900 chr4A 724398513 724400747 2234 True 456.000000 1271 84.928600 361 3059 5 chr4A.!!$R1 2698
11 TraesCS7D01G026900 chr4D 506605249 506607429 2180 True 816.000000 1339 90.172667 689 3091 3 chr4D.!!$R1 2402
12 TraesCS7D01G026900 chr5D 372104402 372104929 527 True 942.000000 942 98.864000 3090 3617 1 chr5D.!!$R1 527
13 TraesCS7D01G026900 chr5D 480019013 480019540 527 False 920.000000 920 98.106000 3090 3617 1 chr5D.!!$F1 527
14 TraesCS7D01G026900 chr3D 94244647 94245174 527 True 920.000000 920 98.106000 3090 3617 1 chr3D.!!$R1 527
15 TraesCS7D01G026900 chr2B 17685016 17685542 526 False 880.000000 880 96.774000 3091 3617 1 chr2B.!!$F1 526
16 TraesCS7D01G026900 chr6A 51469000 51469524 524 True 878.000000 878 96.774000 3090 3616 1 chr6A.!!$R1 526
17 TraesCS7D01G026900 chr6A 599934492 599935019 527 True 870.000000 870 96.408000 3090 3617 1 chr6A.!!$R2 527
18 TraesCS7D01G026900 chr3A 686570682 686571209 527 True 876.000000 876 96.591000 3090 3617 1 chr3A.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 505 1.269051 GCACCGAAAACAACAAGAGGG 60.269 52.381 0.00 0.00 0.00 4.30 F
1332 3262 0.459899 CGGTGACTGATGGATTCGGA 59.540 55.000 0.00 0.00 34.56 4.55 F
1891 3825 0.545309 AGTTCCAGCTGCTACAGGGA 60.545 55.000 8.66 1.47 31.21 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 3536 0.768622 ACCTGAACCAACCAATCCGA 59.231 50.000 0.00 0.0 0.0 4.55 R
2183 4162 1.338973 GTCGTCGGCTACCATTGGATA 59.661 52.381 10.37 0.0 0.0 2.59 R
3470 5899 0.098728 CGTCGTGGGATTTCATTGGC 59.901 55.000 0.00 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.808895 TCGTCGATTTTATTCCTCCACATG 59.191 41.667 0.00 0.00 0.00 3.21
29 32 3.004734 CGATTTTATTCCTCCACATGCCC 59.995 47.826 0.00 0.00 0.00 5.36
45 48 4.114997 CCGCCCCATTGTTGTCGC 62.115 66.667 0.00 0.00 0.00 5.19
67 71 2.282180 GCCCTTTTGCCTCCACGA 60.282 61.111 0.00 0.00 0.00 4.35
153 161 8.586744 GTTTTCCTTCTACTTTCTTCCTCTCTA 58.413 37.037 0.00 0.00 0.00 2.43
200 208 2.849964 CGCTCAGCTCCTCGGCATA 61.850 63.158 0.00 0.00 34.17 3.14
278 298 8.768019 CGACATCAAGATATTCATTTAGAGCAA 58.232 33.333 0.00 0.00 0.00 3.91
327 348 3.307782 ACCGCCGATAAACAACTAATTCG 59.692 43.478 0.00 0.00 0.00 3.34
447 505 1.269051 GCACCGAAAACAACAAGAGGG 60.269 52.381 0.00 0.00 0.00 4.30
604 2454 3.008594 AGAGAGAGAAACAGAGAGGTCGA 59.991 47.826 0.00 0.00 0.00 4.20
622 2472 4.781775 TCGATAGAGAGGGAAAGAGAGT 57.218 45.455 0.00 0.00 42.67 3.24
626 2476 5.686387 CGATAGAGAGGGAAAGAGAGTGAGA 60.686 48.000 0.00 0.00 39.76 3.27
627 2477 4.396357 AGAGAGGGAAAGAGAGTGAGAA 57.604 45.455 0.00 0.00 0.00 2.87
628 2478 4.746466 AGAGAGGGAAAGAGAGTGAGAAA 58.254 43.478 0.00 0.00 0.00 2.52
629 2479 4.526650 AGAGAGGGAAAGAGAGTGAGAAAC 59.473 45.833 0.00 0.00 0.00 2.78
630 2480 4.227197 AGAGGGAAAGAGAGTGAGAAACA 58.773 43.478 0.00 0.00 0.00 2.83
631 2481 4.283212 AGAGGGAAAGAGAGTGAGAAACAG 59.717 45.833 0.00 0.00 0.00 3.16
632 2482 4.227197 AGGGAAAGAGAGTGAGAAACAGA 58.773 43.478 0.00 0.00 0.00 3.41
633 2483 4.283212 AGGGAAAGAGAGTGAGAAACAGAG 59.717 45.833 0.00 0.00 0.00 3.35
634 2484 4.282195 GGGAAAGAGAGTGAGAAACAGAGA 59.718 45.833 0.00 0.00 0.00 3.10
635 2485 5.469479 GGAAAGAGAGTGAGAAACAGAGAG 58.531 45.833 0.00 0.00 0.00 3.20
636 2486 5.467035 AAAGAGAGTGAGAAACAGAGAGG 57.533 43.478 0.00 0.00 0.00 3.69
637 2487 4.112634 AGAGAGTGAGAAACAGAGAGGT 57.887 45.455 0.00 0.00 0.00 3.85
638 2488 4.079253 AGAGAGTGAGAAACAGAGAGGTC 58.921 47.826 0.00 0.00 0.00 3.85
639 2489 2.817258 AGAGTGAGAAACAGAGAGGTCG 59.183 50.000 0.00 0.00 0.00 4.79
640 2490 2.814919 GAGTGAGAAACAGAGAGGTCGA 59.185 50.000 0.00 0.00 0.00 4.20
641 2491 3.426615 AGTGAGAAACAGAGAGGTCGAT 58.573 45.455 0.00 0.00 0.00 3.59
642 2492 4.590918 AGTGAGAAACAGAGAGGTCGATA 58.409 43.478 0.00 0.00 0.00 2.92
643 2493 4.638421 AGTGAGAAACAGAGAGGTCGATAG 59.362 45.833 0.00 0.00 0.00 2.08
658 2508 4.781775 TCGATAGAGAGGGAAAGAGAGT 57.218 45.455 0.00 0.00 42.67 3.24
659 2509 4.456535 TCGATAGAGAGGGAAAGAGAGTG 58.543 47.826 0.00 0.00 42.67 3.51
660 2510 4.164413 TCGATAGAGAGGGAAAGAGAGTGA 59.836 45.833 0.00 0.00 42.67 3.41
661 2511 4.515191 CGATAGAGAGGGAAAGAGAGTGAG 59.485 50.000 0.00 0.00 39.76 3.51
662 2512 5.686387 CGATAGAGAGGGAAAGAGAGTGAGA 60.686 48.000 0.00 0.00 39.76 3.27
663 2513 4.396357 AGAGAGGGAAAGAGAGTGAGAA 57.604 45.455 0.00 0.00 0.00 2.87
664 2514 4.746466 AGAGAGGGAAAGAGAGTGAGAAA 58.254 43.478 0.00 0.00 0.00 2.52
665 2515 4.526650 AGAGAGGGAAAGAGAGTGAGAAAC 59.473 45.833 0.00 0.00 0.00 2.78
666 2516 4.227197 AGAGGGAAAGAGAGTGAGAAACA 58.773 43.478 0.00 0.00 0.00 2.83
667 2517 4.283212 AGAGGGAAAGAGAGTGAGAAACAG 59.717 45.833 0.00 0.00 0.00 3.16
668 2518 4.227197 AGGGAAAGAGAGTGAGAAACAGA 58.773 43.478 0.00 0.00 0.00 3.41
669 2519 4.283212 AGGGAAAGAGAGTGAGAAACAGAG 59.717 45.833 0.00 0.00 0.00 3.35
670 2520 4.282195 GGGAAAGAGAGTGAGAAACAGAGA 59.718 45.833 0.00 0.00 0.00 3.10
671 2521 5.469479 GGAAAGAGAGTGAGAAACAGAGAG 58.531 45.833 0.00 0.00 0.00 3.20
672 2522 5.467035 AAAGAGAGTGAGAAACAGAGAGG 57.533 43.478 0.00 0.00 0.00 3.69
673 2523 4.112634 AGAGAGTGAGAAACAGAGAGGT 57.887 45.455 0.00 0.00 0.00 3.85
674 2524 4.079253 AGAGAGTGAGAAACAGAGAGGTC 58.921 47.826 0.00 0.00 0.00 3.85
675 2525 2.817258 AGAGTGAGAAACAGAGAGGTCG 59.183 50.000 0.00 0.00 0.00 4.79
676 2526 2.814919 GAGTGAGAAACAGAGAGGTCGA 59.185 50.000 0.00 0.00 0.00 4.20
677 2527 3.426615 AGTGAGAAACAGAGAGGTCGAT 58.573 45.455 0.00 0.00 0.00 3.59
678 2528 4.590918 AGTGAGAAACAGAGAGGTCGATA 58.409 43.478 0.00 0.00 0.00 2.92
679 2529 4.638421 AGTGAGAAACAGAGAGGTCGATAG 59.362 45.833 0.00 0.00 0.00 2.08
694 2544 4.781775 TCGATAGAGAGGGAAAGAGAGT 57.218 45.455 0.00 0.00 42.67 3.24
695 2545 4.456535 TCGATAGAGAGGGAAAGAGAGTG 58.543 47.826 0.00 0.00 42.67 3.51
731 2589 4.034048 GTCGCTAGAGAGAGAGTGAGAAAG 59.966 50.000 0.00 0.00 33.03 2.62
882 2762 5.796928 TCTAAACCCTTCCCTATAAAACCCA 59.203 40.000 0.00 0.00 0.00 4.51
884 2764 2.584031 ACCCTTCCCTATAAAACCCACC 59.416 50.000 0.00 0.00 0.00 4.61
914 2794 2.429250 CCCCAACGAAACCTCAAAAACT 59.571 45.455 0.00 0.00 0.00 2.66
923 2803 5.582550 GAAACCTCAAAAACTCAACTCCTG 58.417 41.667 0.00 0.00 0.00 3.86
979 2885 7.205992 GGACAAAGAAAAAGAAGAAGCTCAAT 58.794 34.615 0.00 0.00 0.00 2.57
1329 3259 1.154205 CGCCGGTGACTGATGGATTC 61.154 60.000 10.20 0.00 0.00 2.52
1330 3260 1.154205 GCCGGTGACTGATGGATTCG 61.154 60.000 1.90 0.00 0.00 3.34
1331 3261 0.530650 CCGGTGACTGATGGATTCGG 60.531 60.000 0.00 0.00 36.72 4.30
1332 3262 0.459899 CGGTGACTGATGGATTCGGA 59.540 55.000 0.00 0.00 34.56 4.55
1333 3263 1.069204 CGGTGACTGATGGATTCGGAT 59.931 52.381 0.00 0.00 34.56 4.18
1334 3264 2.760374 GGTGACTGATGGATTCGGATC 58.240 52.381 0.00 0.00 34.56 3.36
1335 3265 2.103094 GGTGACTGATGGATTCGGATCA 59.897 50.000 5.94 0.00 34.56 2.92
1336 3266 3.244353 GGTGACTGATGGATTCGGATCAT 60.244 47.826 5.94 0.00 34.56 2.45
1337 3267 3.744942 GTGACTGATGGATTCGGATCATG 59.255 47.826 5.94 0.00 34.56 3.07
1338 3268 3.244318 TGACTGATGGATTCGGATCATGG 60.244 47.826 5.94 0.00 34.56 3.66
1339 3269 2.707791 ACTGATGGATTCGGATCATGGT 59.292 45.455 5.94 0.00 34.56 3.55
1340 3270 3.137176 ACTGATGGATTCGGATCATGGTT 59.863 43.478 5.94 0.00 34.56 3.67
1341 3271 4.139786 CTGATGGATTCGGATCATGGTTT 58.860 43.478 5.94 0.00 33.77 3.27
1342 3272 4.535781 TGATGGATTCGGATCATGGTTTT 58.464 39.130 5.94 0.00 33.77 2.43
1343 3273 4.580167 TGATGGATTCGGATCATGGTTTTC 59.420 41.667 5.94 0.00 33.77 2.29
1344 3274 3.961849 TGGATTCGGATCATGGTTTTCA 58.038 40.909 5.94 0.00 33.77 2.69
1345 3275 3.694072 TGGATTCGGATCATGGTTTTCAC 59.306 43.478 5.94 0.00 33.77 3.18
1346 3276 3.947834 GGATTCGGATCATGGTTTTCACT 59.052 43.478 5.94 0.00 33.77 3.41
1347 3277 4.399303 GGATTCGGATCATGGTTTTCACTT 59.601 41.667 5.94 0.00 33.77 3.16
1348 3278 5.105756 GGATTCGGATCATGGTTTTCACTTT 60.106 40.000 5.94 0.00 33.77 2.66
1349 3279 5.371115 TTCGGATCATGGTTTTCACTTTC 57.629 39.130 0.00 0.00 0.00 2.62
1350 3280 3.435327 TCGGATCATGGTTTTCACTTTCG 59.565 43.478 0.00 0.00 0.00 3.46
1351 3281 3.426159 CGGATCATGGTTTTCACTTTCGG 60.426 47.826 0.00 0.00 0.00 4.30
1352 3282 3.506067 GGATCATGGTTTTCACTTTCGGT 59.494 43.478 0.00 0.00 0.00 4.69
1353 3283 3.980646 TCATGGTTTTCACTTTCGGTG 57.019 42.857 0.00 0.00 46.60 4.94
1363 3293 2.833631 ACTTTCGGTGAGATTTCGGT 57.166 45.000 0.00 0.00 0.00 4.69
1364 3294 2.413837 ACTTTCGGTGAGATTTCGGTG 58.586 47.619 0.00 0.00 0.00 4.94
1365 3295 2.036733 ACTTTCGGTGAGATTTCGGTGA 59.963 45.455 0.00 0.00 0.00 4.02
1366 3296 2.823924 TTCGGTGAGATTTCGGTGAA 57.176 45.000 0.00 0.00 0.00 3.18
1367 3297 2.823924 TCGGTGAGATTTCGGTGAAA 57.176 45.000 0.00 0.00 35.94 2.69
1368 3298 3.328382 TCGGTGAGATTTCGGTGAAAT 57.672 42.857 4.54 4.54 43.77 2.17
1369 3299 3.670625 TCGGTGAGATTTCGGTGAAATT 58.329 40.909 6.26 0.00 41.56 1.82
1370 3300 3.682858 TCGGTGAGATTTCGGTGAAATTC 59.317 43.478 6.26 6.79 41.56 2.17
1371 3301 3.435327 CGGTGAGATTTCGGTGAAATTCA 59.565 43.478 6.26 8.76 41.56 2.57
1372 3302 4.669197 CGGTGAGATTTCGGTGAAATTCAC 60.669 45.833 17.16 17.16 46.23 3.18
1373 3303 4.455877 GGTGAGATTTCGGTGAAATTCACT 59.544 41.667 23.30 5.37 46.19 3.41
1397 3327 7.509141 TGAATTTCAGTAATTTCAGCAGACA 57.491 32.000 0.00 0.00 36.59 3.41
1398 3328 7.362662 TGAATTTCAGTAATTTCAGCAGACAC 58.637 34.615 0.00 0.00 36.59 3.67
1399 3329 7.229306 TGAATTTCAGTAATTTCAGCAGACACT 59.771 33.333 0.00 0.00 36.59 3.55
1400 3330 5.929697 TTCAGTAATTTCAGCAGACACTG 57.070 39.130 0.00 0.00 39.12 3.66
1401 3331 5.213891 TCAGTAATTTCAGCAGACACTGA 57.786 39.130 2.81 7.52 44.84 3.41
1413 3343 8.565896 TCAGCAGACACTGAAATATTATGTTT 57.434 30.769 2.81 0.00 43.59 2.83
1414 3344 8.668353 TCAGCAGACACTGAAATATTATGTTTC 58.332 33.333 7.36 7.36 43.59 2.78
1415 3345 7.637519 CAGCAGACACTGAAATATTATGTTTCG 59.362 37.037 9.28 7.13 40.25 3.46
1416 3346 6.907212 GCAGACACTGAAATATTATGTTTCGG 59.093 38.462 17.71 17.71 43.98 4.30
1417 3347 6.907212 CAGACACTGAAATATTATGTTTCGGC 59.093 38.462 18.77 7.05 42.81 5.54
1418 3348 6.038271 AGACACTGAAATATTATGTTTCGGCC 59.962 38.462 18.77 10.91 42.81 6.13
1419 3349 5.650266 ACACTGAAATATTATGTTTCGGCCA 59.350 36.000 18.77 0.00 42.81 5.36
1420 3350 6.151985 ACACTGAAATATTATGTTTCGGCCAA 59.848 34.615 18.77 0.00 42.81 4.52
1421 3351 7.032580 CACTGAAATATTATGTTTCGGCCAAA 58.967 34.615 18.77 0.00 42.81 3.28
1422 3352 7.543868 CACTGAAATATTATGTTTCGGCCAAAA 59.456 33.333 18.77 0.00 42.81 2.44
1423 3353 8.257306 ACTGAAATATTATGTTTCGGCCAAAAT 58.743 29.630 18.77 0.00 42.81 1.82
1424 3354 9.743057 CTGAAATATTATGTTTCGGCCAAAATA 57.257 29.630 2.24 0.00 38.18 1.40
1430 3360 8.647143 ATTATGTTTCGGCCAAAATATTTCAG 57.353 30.769 3.53 0.00 0.00 3.02
1431 3361 4.241681 TGTTTCGGCCAAAATATTTCAGC 58.758 39.130 2.24 11.95 0.00 4.26
1432 3362 4.241681 GTTTCGGCCAAAATATTTCAGCA 58.758 39.130 18.73 2.88 0.00 4.41
1433 3363 4.527509 TTCGGCCAAAATATTTCAGCAA 57.472 36.364 18.73 7.49 0.00 3.91
1434 3364 4.734398 TCGGCCAAAATATTTCAGCAAT 57.266 36.364 18.73 0.00 0.00 3.56
1435 3365 5.083533 TCGGCCAAAATATTTCAGCAATT 57.916 34.783 18.73 0.00 0.00 2.32
1436 3366 5.486526 TCGGCCAAAATATTTCAGCAATTT 58.513 33.333 18.73 0.00 0.00 1.82
1437 3367 5.580297 TCGGCCAAAATATTTCAGCAATTTC 59.420 36.000 18.73 5.61 0.00 2.17
1438 3368 5.350914 CGGCCAAAATATTTCAGCAATTTCA 59.649 36.000 18.73 0.00 0.00 2.69
1439 3369 6.455913 CGGCCAAAATATTTCAGCAATTTCAG 60.456 38.462 18.73 3.61 0.00 3.02
1440 3370 6.372381 GGCCAAAATATTTCAGCAATTTCAGT 59.628 34.615 18.73 0.00 0.00 3.41
1441 3371 7.548780 GGCCAAAATATTTCAGCAATTTCAGTA 59.451 33.333 18.73 0.00 0.00 2.74
1442 3372 9.101655 GCCAAAATATTTCAGCAATTTCAGTAT 57.898 29.630 14.39 0.00 0.00 2.12
1447 3377 9.956720 AATATTTCAGCAATTTCAGTATAGCAC 57.043 29.630 0.00 0.00 0.00 4.40
1448 3378 6.816134 TTTCAGCAATTTCAGTATAGCACA 57.184 33.333 0.00 0.00 0.00 4.57
1449 3379 6.816134 TTCAGCAATTTCAGTATAGCACAA 57.184 33.333 0.00 0.00 0.00 3.33
1450 3380 6.182039 TCAGCAATTTCAGTATAGCACAAC 57.818 37.500 0.00 0.00 0.00 3.32
1451 3381 5.704978 TCAGCAATTTCAGTATAGCACAACA 59.295 36.000 0.00 0.00 0.00 3.33
1452 3382 6.206438 TCAGCAATTTCAGTATAGCACAACAA 59.794 34.615 0.00 0.00 0.00 2.83
1453 3383 7.031372 CAGCAATTTCAGTATAGCACAACAAT 58.969 34.615 0.00 0.00 0.00 2.71
1454 3384 7.543172 CAGCAATTTCAGTATAGCACAACAATT 59.457 33.333 0.00 0.00 0.00 2.32
1455 3385 7.756722 AGCAATTTCAGTATAGCACAACAATTC 59.243 33.333 0.00 0.00 0.00 2.17
1456 3386 7.009540 GCAATTTCAGTATAGCACAACAATTCC 59.990 37.037 0.00 0.00 0.00 3.01
1457 3387 7.701539 ATTTCAGTATAGCACAACAATTCCA 57.298 32.000 0.00 0.00 0.00 3.53
1458 3388 7.517614 TTTCAGTATAGCACAACAATTCCAA 57.482 32.000 0.00 0.00 0.00 3.53
1459 3389 7.701539 TTCAGTATAGCACAACAATTCCAAT 57.298 32.000 0.00 0.00 0.00 3.16
1460 3390 8.800370 TTCAGTATAGCACAACAATTCCAATA 57.200 30.769 0.00 0.00 0.00 1.90
1461 3391 8.978874 TCAGTATAGCACAACAATTCCAATAT 57.021 30.769 0.00 0.00 0.00 1.28
1462 3392 9.407380 TCAGTATAGCACAACAATTCCAATATT 57.593 29.630 0.00 0.00 0.00 1.28
1467 3397 9.941325 ATAGCACAACAATTCCAATATTTTTCA 57.059 25.926 0.00 0.00 0.00 2.69
1468 3398 8.674263 AGCACAACAATTCCAATATTTTTCAA 57.326 26.923 0.00 0.00 0.00 2.69
1469 3399 9.118300 AGCACAACAATTCCAATATTTTTCAAA 57.882 25.926 0.00 0.00 0.00 2.69
1470 3400 9.727627 GCACAACAATTCCAATATTTTTCAAAA 57.272 25.926 0.00 0.00 0.00 2.44
1512 3442 6.624352 ATTGGATTCAAGTGAATATGTCGG 57.376 37.500 6.52 0.00 44.14 4.79
1513 3443 5.097742 TGGATTCAAGTGAATATGTCGGT 57.902 39.130 6.52 0.00 44.14 4.69
1514 3444 5.116180 TGGATTCAAGTGAATATGTCGGTC 58.884 41.667 6.52 0.00 44.14 4.79
1515 3445 5.116180 GGATTCAAGTGAATATGTCGGTCA 58.884 41.667 6.52 0.00 44.14 4.02
1516 3446 5.760253 GGATTCAAGTGAATATGTCGGTCAT 59.240 40.000 6.52 0.00 44.14 3.06
1517 3447 6.260936 GGATTCAAGTGAATATGTCGGTCATT 59.739 38.462 6.52 0.00 44.14 2.57
1518 3448 7.201732 GGATTCAAGTGAATATGTCGGTCATTT 60.202 37.037 6.52 0.00 44.14 2.32
1519 3449 6.421377 TCAAGTGAATATGTCGGTCATTTG 57.579 37.500 4.16 4.16 39.20 2.32
1520 3450 5.353956 TCAAGTGAATATGTCGGTCATTTGG 59.646 40.000 8.75 0.00 38.68 3.28
1521 3451 3.627577 AGTGAATATGTCGGTCATTTGGC 59.372 43.478 0.00 0.00 37.91 4.52
1522 3452 3.627577 GTGAATATGTCGGTCATTTGGCT 59.372 43.478 0.00 0.00 37.91 4.75
1523 3453 3.627123 TGAATATGTCGGTCATTTGGCTG 59.373 43.478 0.00 0.00 37.91 4.85
1524 3454 3.558931 ATATGTCGGTCATTTGGCTGA 57.441 42.857 0.00 0.00 37.91 4.26
1525 3455 2.198827 ATGTCGGTCATTTGGCTGAA 57.801 45.000 0.00 0.00 36.71 3.02
1526 3456 1.974265 TGTCGGTCATTTGGCTGAAA 58.026 45.000 0.00 0.00 36.71 2.69
1527 3457 2.513753 TGTCGGTCATTTGGCTGAAAT 58.486 42.857 0.00 0.00 36.71 2.17
1536 3466 3.749665 TTTGGCTGAAATGGAAACTGG 57.250 42.857 0.00 0.00 0.00 4.00
1537 3467 2.673775 TGGCTGAAATGGAAACTGGA 57.326 45.000 0.00 0.00 0.00 3.86
1538 3468 2.956132 TGGCTGAAATGGAAACTGGAA 58.044 42.857 0.00 0.00 0.00 3.53
1539 3469 3.509442 TGGCTGAAATGGAAACTGGAAT 58.491 40.909 0.00 0.00 0.00 3.01
1540 3470 3.903090 TGGCTGAAATGGAAACTGGAATT 59.097 39.130 0.00 0.00 0.00 2.17
1541 3471 4.021192 TGGCTGAAATGGAAACTGGAATTC 60.021 41.667 0.00 0.00 0.00 2.17
1542 3472 4.021192 GGCTGAAATGGAAACTGGAATTCA 60.021 41.667 7.93 0.00 0.00 2.57
1543 3473 4.925646 GCTGAAATGGAAACTGGAATTCAC 59.074 41.667 7.93 0.00 0.00 3.18
1544 3474 5.279156 GCTGAAATGGAAACTGGAATTCACT 60.279 40.000 7.93 0.00 0.00 3.41
1545 3475 6.088016 TGAAATGGAAACTGGAATTCACTG 57.912 37.500 7.93 3.86 0.00 3.66
1546 3476 5.832595 TGAAATGGAAACTGGAATTCACTGA 59.167 36.000 7.93 0.00 0.00 3.41
1547 3477 6.323482 TGAAATGGAAACTGGAATTCACTGAA 59.677 34.615 7.93 0.00 0.00 3.02
1548 3478 6.923199 AATGGAAACTGGAATTCACTGAAT 57.077 33.333 7.93 0.00 33.25 2.57
1549 3479 6.923199 ATGGAAACTGGAATTCACTGAATT 57.077 33.333 15.55 15.55 43.77 2.17
1550 3480 6.729690 TGGAAACTGGAATTCACTGAATTT 57.270 33.333 16.48 2.63 41.56 1.82
1551 3481 6.748132 TGGAAACTGGAATTCACTGAATTTC 58.252 36.000 16.48 15.20 41.56 2.17
1552 3482 6.323482 TGGAAACTGGAATTCACTGAATTTCA 59.677 34.615 20.09 20.09 42.94 2.69
1566 3496 5.119931 TGAATTTCAGTGATTTCGGTTGG 57.880 39.130 0.00 0.00 0.00 3.77
1567 3497 4.582656 TGAATTTCAGTGATTTCGGTTGGT 59.417 37.500 0.00 0.00 0.00 3.67
1568 3498 3.980646 TTTCAGTGATTTCGGTTGGTG 57.019 42.857 0.00 0.00 0.00 4.17
1569 3499 1.234821 TCAGTGATTTCGGTTGGTGC 58.765 50.000 0.00 0.00 0.00 5.01
1570 3500 1.202758 TCAGTGATTTCGGTTGGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
1571 3501 1.069022 CAGTGATTTCGGTTGGTGCTG 60.069 52.381 0.00 0.00 0.00 4.41
1572 3502 1.202758 AGTGATTTCGGTTGGTGCTGA 60.203 47.619 0.00 0.00 0.00 4.26
1573 3503 1.606668 GTGATTTCGGTTGGTGCTGAA 59.393 47.619 0.00 0.00 32.46 3.02
1574 3504 2.034053 GTGATTTCGGTTGGTGCTGAAA 59.966 45.455 3.06 3.06 44.68 2.69
1577 3507 3.810310 TTTCGGTTGGTGCTGAAATTT 57.190 38.095 0.00 0.00 38.41 1.82
1578 3508 3.810310 TTCGGTTGGTGCTGAAATTTT 57.190 38.095 0.00 0.00 31.49 1.82
1579 3509 3.810310 TCGGTTGGTGCTGAAATTTTT 57.190 38.095 0.00 0.00 0.00 1.94
1580 3510 3.712187 TCGGTTGGTGCTGAAATTTTTC 58.288 40.909 0.00 0.00 37.69 2.29
1581 3511 3.383185 TCGGTTGGTGCTGAAATTTTTCT 59.617 39.130 4.80 0.00 38.02 2.52
1582 3512 3.490526 CGGTTGGTGCTGAAATTTTTCTG 59.509 43.478 4.80 5.32 38.02 3.02
1583 3513 4.692228 GGTTGGTGCTGAAATTTTTCTGA 58.308 39.130 12.42 0.00 38.07 3.27
1584 3514 5.115480 GGTTGGTGCTGAAATTTTTCTGAA 58.885 37.500 12.42 1.18 38.07 3.02
1585 3515 5.006649 GGTTGGTGCTGAAATTTTTCTGAAC 59.993 40.000 12.42 11.63 41.41 3.18
1588 3518 5.895216 GTGCTGAAATTTTTCTGAACCTG 57.105 39.130 12.42 0.00 38.20 4.00
1589 3519 5.591099 GTGCTGAAATTTTTCTGAACCTGA 58.409 37.500 12.42 0.00 38.20 3.86
1590 3520 6.042143 GTGCTGAAATTTTTCTGAACCTGAA 58.958 36.000 12.42 0.00 38.20 3.02
1591 3521 6.534793 GTGCTGAAATTTTTCTGAACCTGAAA 59.465 34.615 12.42 0.00 38.20 2.69
1592 3522 7.225341 GTGCTGAAATTTTTCTGAACCTGAAAT 59.775 33.333 12.42 0.00 38.20 2.17
1593 3523 7.769970 TGCTGAAATTTTTCTGAACCTGAAATT 59.230 29.630 12.42 5.22 38.07 1.82
1594 3524 8.066000 GCTGAAATTTTTCTGAACCTGAAATTG 58.934 33.333 12.42 2.47 38.07 2.32
1595 3525 9.316730 CTGAAATTTTTCTGAACCTGAAATTGA 57.683 29.630 9.88 2.69 38.07 2.57
1596 3526 9.664332 TGAAATTTTTCTGAACCTGAAATTGAA 57.336 25.926 9.88 2.24 38.02 2.69
1600 3530 7.841915 TTTTCTGAACCTGAAATTGAAAACC 57.158 32.000 0.00 0.00 32.91 3.27
1601 3531 6.537453 TTCTGAACCTGAAATTGAAAACCA 57.463 33.333 0.00 0.00 0.00 3.67
1602 3532 6.729690 TCTGAACCTGAAATTGAAAACCAT 57.270 33.333 0.00 0.00 0.00 3.55
1603 3533 6.514947 TCTGAACCTGAAATTGAAAACCATG 58.485 36.000 0.00 0.00 0.00 3.66
1604 3534 6.323482 TCTGAACCTGAAATTGAAAACCATGA 59.677 34.615 0.00 0.00 0.00 3.07
1605 3535 7.015487 TCTGAACCTGAAATTGAAAACCATGAT 59.985 33.333 0.00 0.00 0.00 2.45
1606 3536 7.507829 TGAACCTGAAATTGAAAACCATGATT 58.492 30.769 0.00 0.00 0.00 2.57
1607 3537 7.656948 TGAACCTGAAATTGAAAACCATGATTC 59.343 33.333 0.00 0.00 0.00 2.52
1708 3642 1.963338 ACACCTGCGCAAGAAGCTC 60.963 57.895 14.09 0.00 43.86 4.09
1861 3795 3.123620 GCGCTCAAGCTCCAGGTG 61.124 66.667 0.00 0.00 39.32 4.00
1885 3819 1.375908 CGCCAAGTTCCAGCTGCTA 60.376 57.895 8.66 0.00 0.00 3.49
1891 3825 0.545309 AGTTCCAGCTGCTACAGGGA 60.545 55.000 8.66 1.47 31.21 4.20
2032 4011 2.320587 GCAGTGCCAGTGGAACGAG 61.321 63.158 15.20 12.37 45.86 4.18
2183 4162 1.234615 CGGGAGCAACGTGACCATTT 61.235 55.000 0.00 0.00 0.00 2.32
2373 4375 6.581388 TCCCATTCCATCAACTTTCTATCT 57.419 37.500 0.00 0.00 0.00 1.98
2589 4626 9.228949 TCATGTTTATTTTTATGCAGGCAAATT 57.771 25.926 0.00 0.00 0.00 1.82
2661 4698 9.947433 AAGATCAAGAATGCCAAAAATAATCAA 57.053 25.926 0.00 0.00 0.00 2.57
2701 4745 4.771577 ACTAATTGTTGGATTGGATGCACA 59.228 37.500 0.00 0.00 0.00 4.57
2711 4755 3.834489 TTGGATGCACATTTTGGTTGT 57.166 38.095 0.00 0.00 0.00 3.32
2712 4756 3.383620 TGGATGCACATTTTGGTTGTC 57.616 42.857 0.00 0.00 0.00 3.18
2718 4762 3.236816 GCACATTTTGGTTGTCGATCAG 58.763 45.455 0.00 0.00 0.00 2.90
2733 4777 5.105351 TGTCGATCAGTACCAAAGATGTGAT 60.105 40.000 0.00 0.00 0.00 3.06
2835 5217 9.498176 ACATATACGTATGTATACAGTCACAGA 57.502 33.333 18.37 1.18 46.91 3.41
2921 5306 7.417570 GGAGTGTATGTAATAACTAGCCTGTGT 60.418 40.741 0.00 0.00 0.00 3.72
2925 5310 8.482943 TGTATGTAATAACTAGCCTGTGTCATT 58.517 33.333 0.00 0.00 0.00 2.57
2926 5311 7.792374 ATGTAATAACTAGCCTGTGTCATTG 57.208 36.000 0.00 0.00 0.00 2.82
2934 5356 1.002468 GCCTGTGTCATTGTGTGTGAC 60.002 52.381 0.00 0.00 44.77 3.67
2942 5364 3.561310 GTCATTGTGTGTGACAGTGTCAT 59.439 43.478 27.82 8.31 44.63 3.06
3162 5591 7.933577 ACTCATTCGATACAATATTCACCACAT 59.066 33.333 0.00 0.00 0.00 3.21
3287 5716 9.252962 GACAATTGAAGATTGTTGATCAACTTT 57.747 29.630 32.57 22.20 41.76 2.66
3470 5899 1.651240 CCTCCATGCTTTGACAGGCG 61.651 60.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.021723 GCGGGCATGTGGAGGAATAAA 61.022 52.381 0.00 0.00 0.00 1.40
14 15 2.124151 GCGGGCATGTGGAGGAAT 60.124 61.111 0.00 0.00 0.00 3.01
26 27 3.758931 GACAACAATGGGGCGGGC 61.759 66.667 0.00 0.00 0.00 6.13
29 32 4.114997 GGCGACAACAATGGGGCG 62.115 66.667 0.00 0.00 31.81 6.13
45 48 1.193462 TGGAGGCAAAAGGGCATTGG 61.193 55.000 0.00 0.00 46.44 3.16
153 161 3.676324 CGAATACAAGCGGAGGAAGAAGT 60.676 47.826 0.00 0.00 0.00 3.01
236 252 5.388111 TGATGTCGAATATTCCGTATCGAC 58.612 41.667 17.38 17.38 40.16 4.20
431 488 4.095782 TCTTGTTCCCTCTTGTTGTTTTCG 59.904 41.667 0.00 0.00 0.00 3.46
447 505 1.006832 ACGTGTGTGCTGTCTTGTTC 58.993 50.000 0.00 0.00 0.00 3.18
604 2454 5.725551 TCTCACTCTCTTTCCCTCTCTAT 57.274 43.478 0.00 0.00 0.00 1.98
612 2462 5.461032 TCTCTGTTTCTCACTCTCTTTCC 57.539 43.478 0.00 0.00 0.00 3.13
622 2472 4.844884 TCTATCGACCTCTCTGTTTCTCA 58.155 43.478 0.00 0.00 0.00 3.27
626 2476 4.204012 CCTCTCTATCGACCTCTCTGTTT 58.796 47.826 0.00 0.00 0.00 2.83
627 2477 3.434453 CCCTCTCTATCGACCTCTCTGTT 60.434 52.174 0.00 0.00 0.00 3.16
628 2478 2.105821 CCCTCTCTATCGACCTCTCTGT 59.894 54.545 0.00 0.00 0.00 3.41
629 2479 2.370519 TCCCTCTCTATCGACCTCTCTG 59.629 54.545 0.00 0.00 0.00 3.35
630 2480 2.696775 TCCCTCTCTATCGACCTCTCT 58.303 52.381 0.00 0.00 0.00 3.10
631 2481 3.495434 TTCCCTCTCTATCGACCTCTC 57.505 52.381 0.00 0.00 0.00 3.20
632 2482 3.460340 TCTTTCCCTCTCTATCGACCTCT 59.540 47.826 0.00 0.00 0.00 3.69
633 2483 3.818773 CTCTTTCCCTCTCTATCGACCTC 59.181 52.174 0.00 0.00 0.00 3.85
634 2484 3.460340 TCTCTTTCCCTCTCTATCGACCT 59.540 47.826 0.00 0.00 0.00 3.85
635 2485 3.818773 CTCTCTTTCCCTCTCTATCGACC 59.181 52.174 0.00 0.00 0.00 4.79
636 2486 4.274950 CACTCTCTTTCCCTCTCTATCGAC 59.725 50.000 0.00 0.00 0.00 4.20
637 2487 4.164413 TCACTCTCTTTCCCTCTCTATCGA 59.836 45.833 0.00 0.00 0.00 3.59
638 2488 4.456535 TCACTCTCTTTCCCTCTCTATCG 58.543 47.826 0.00 0.00 0.00 2.92
639 2489 5.690865 TCTCACTCTCTTTCCCTCTCTATC 58.309 45.833 0.00 0.00 0.00 2.08
640 2490 5.725551 TCTCACTCTCTTTCCCTCTCTAT 57.274 43.478 0.00 0.00 0.00 1.98
641 2491 5.522315 TTCTCACTCTCTTTCCCTCTCTA 57.478 43.478 0.00 0.00 0.00 2.43
642 2492 4.396357 TTCTCACTCTCTTTCCCTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
643 2493 4.282195 TGTTTCTCACTCTCTTTCCCTCTC 59.718 45.833 0.00 0.00 0.00 3.20
644 2494 4.227197 TGTTTCTCACTCTCTTTCCCTCT 58.773 43.478 0.00 0.00 0.00 3.69
645 2495 4.282195 TCTGTTTCTCACTCTCTTTCCCTC 59.718 45.833 0.00 0.00 0.00 4.30
646 2496 4.227197 TCTGTTTCTCACTCTCTTTCCCT 58.773 43.478 0.00 0.00 0.00 4.20
647 2497 4.282195 TCTCTGTTTCTCACTCTCTTTCCC 59.718 45.833 0.00 0.00 0.00 3.97
648 2498 5.461032 TCTCTGTTTCTCACTCTCTTTCC 57.539 43.478 0.00 0.00 0.00 3.13
649 2499 5.010617 ACCTCTCTGTTTCTCACTCTCTTTC 59.989 44.000 0.00 0.00 0.00 2.62
650 2500 4.898861 ACCTCTCTGTTTCTCACTCTCTTT 59.101 41.667 0.00 0.00 0.00 2.52
651 2501 4.479158 ACCTCTCTGTTTCTCACTCTCTT 58.521 43.478 0.00 0.00 0.00 2.85
652 2502 4.079253 GACCTCTCTGTTTCTCACTCTCT 58.921 47.826 0.00 0.00 0.00 3.10
653 2503 3.119990 CGACCTCTCTGTTTCTCACTCTC 60.120 52.174 0.00 0.00 0.00 3.20
654 2504 2.817258 CGACCTCTCTGTTTCTCACTCT 59.183 50.000 0.00 0.00 0.00 3.24
655 2505 2.814919 TCGACCTCTCTGTTTCTCACTC 59.185 50.000 0.00 0.00 0.00 3.51
656 2506 2.865079 TCGACCTCTCTGTTTCTCACT 58.135 47.619 0.00 0.00 0.00 3.41
657 2507 3.859411 ATCGACCTCTCTGTTTCTCAC 57.141 47.619 0.00 0.00 0.00 3.51
658 2508 4.844884 TCTATCGACCTCTCTGTTTCTCA 58.155 43.478 0.00 0.00 0.00 3.27
659 2509 5.120399 TCTCTATCGACCTCTCTGTTTCTC 58.880 45.833 0.00 0.00 0.00 2.87
660 2510 5.105567 TCTCTATCGACCTCTCTGTTTCT 57.894 43.478 0.00 0.00 0.00 2.52
661 2511 4.274950 CCTCTCTATCGACCTCTCTGTTTC 59.725 50.000 0.00 0.00 0.00 2.78
662 2512 4.204012 CCTCTCTATCGACCTCTCTGTTT 58.796 47.826 0.00 0.00 0.00 2.83
663 2513 3.434453 CCCTCTCTATCGACCTCTCTGTT 60.434 52.174 0.00 0.00 0.00 3.16
664 2514 2.105821 CCCTCTCTATCGACCTCTCTGT 59.894 54.545 0.00 0.00 0.00 3.41
665 2515 2.370519 TCCCTCTCTATCGACCTCTCTG 59.629 54.545 0.00 0.00 0.00 3.35
666 2516 2.696775 TCCCTCTCTATCGACCTCTCT 58.303 52.381 0.00 0.00 0.00 3.10
667 2517 3.495434 TTCCCTCTCTATCGACCTCTC 57.505 52.381 0.00 0.00 0.00 3.20
668 2518 3.460340 TCTTTCCCTCTCTATCGACCTCT 59.540 47.826 0.00 0.00 0.00 3.69
669 2519 3.818773 CTCTTTCCCTCTCTATCGACCTC 59.181 52.174 0.00 0.00 0.00 3.85
670 2520 3.460340 TCTCTTTCCCTCTCTATCGACCT 59.540 47.826 0.00 0.00 0.00 3.85
671 2521 3.818773 CTCTCTTTCCCTCTCTATCGACC 59.181 52.174 0.00 0.00 0.00 4.79
672 2522 4.274950 CACTCTCTTTCCCTCTCTATCGAC 59.725 50.000 0.00 0.00 0.00 4.20
673 2523 4.164413 TCACTCTCTTTCCCTCTCTATCGA 59.836 45.833 0.00 0.00 0.00 3.59
674 2524 4.456535 TCACTCTCTTTCCCTCTCTATCG 58.543 47.826 0.00 0.00 0.00 2.92
675 2525 5.690865 TCTCACTCTCTTTCCCTCTCTATC 58.309 45.833 0.00 0.00 0.00 2.08
676 2526 5.725551 TCTCACTCTCTTTCCCTCTCTAT 57.274 43.478 0.00 0.00 0.00 1.98
677 2527 5.522315 TTCTCACTCTCTTTCCCTCTCTA 57.478 43.478 0.00 0.00 0.00 2.43
678 2528 4.396357 TTCTCACTCTCTTTCCCTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
679 2529 4.282195 TGTTTCTCACTCTCTTTCCCTCTC 59.718 45.833 0.00 0.00 0.00 3.20
680 2530 4.227197 TGTTTCTCACTCTCTTTCCCTCT 58.773 43.478 0.00 0.00 0.00 3.69
681 2531 4.282195 TCTGTTTCTCACTCTCTTTCCCTC 59.718 45.833 0.00 0.00 0.00 4.30
682 2532 4.227197 TCTGTTTCTCACTCTCTTTCCCT 58.773 43.478 0.00 0.00 0.00 4.20
683 2533 4.282195 TCTCTGTTTCTCACTCTCTTTCCC 59.718 45.833 0.00 0.00 0.00 3.97
684 2534 5.461032 TCTCTGTTTCTCACTCTCTTTCC 57.539 43.478 0.00 0.00 0.00 3.13
685 2535 5.010617 ACCTCTCTGTTTCTCACTCTCTTTC 59.989 44.000 0.00 0.00 0.00 2.62
686 2536 4.898861 ACCTCTCTGTTTCTCACTCTCTTT 59.101 41.667 0.00 0.00 0.00 2.52
687 2537 4.479158 ACCTCTCTGTTTCTCACTCTCTT 58.521 43.478 0.00 0.00 0.00 2.85
688 2538 4.079253 GACCTCTCTGTTTCTCACTCTCT 58.921 47.826 0.00 0.00 0.00 3.10
689 2539 3.119990 CGACCTCTCTGTTTCTCACTCTC 60.120 52.174 0.00 0.00 0.00 3.20
690 2540 2.817258 CGACCTCTCTGTTTCTCACTCT 59.183 50.000 0.00 0.00 0.00 3.24
691 2541 2.669950 GCGACCTCTCTGTTTCTCACTC 60.670 54.545 0.00 0.00 0.00 3.51
692 2542 1.271102 GCGACCTCTCTGTTTCTCACT 59.729 52.381 0.00 0.00 0.00 3.41
693 2543 1.271102 AGCGACCTCTCTGTTTCTCAC 59.729 52.381 0.00 0.00 0.00 3.51
694 2544 1.621992 AGCGACCTCTCTGTTTCTCA 58.378 50.000 0.00 0.00 0.00 3.27
695 2545 3.011119 TCTAGCGACCTCTCTGTTTCTC 58.989 50.000 0.00 0.00 0.00 2.87
731 2589 2.775384 TCACCTCTCTCTACCCTCTCTC 59.225 54.545 0.00 0.00 0.00 3.20
882 2762 1.999002 CGTTGGGGTGGATAGGGGT 60.999 63.158 0.00 0.00 0.00 4.95
884 2764 0.621609 TTTCGTTGGGGTGGATAGGG 59.378 55.000 0.00 0.00 0.00 3.53
1140 3057 1.671054 GCTCTTGCCACAGCGGTTA 60.671 57.895 0.00 0.00 44.31 2.85
1176 3093 1.754234 GTCGGGGCGGAGGTAGTTA 60.754 63.158 0.00 0.00 0.00 2.24
1329 3259 3.426159 CCGAAAGTGAAAACCATGATCCG 60.426 47.826 0.00 0.00 0.00 4.18
1330 3260 3.506067 ACCGAAAGTGAAAACCATGATCC 59.494 43.478 0.00 0.00 0.00 3.36
1331 3261 4.766404 ACCGAAAGTGAAAACCATGATC 57.234 40.909 0.00 0.00 0.00 2.92
1343 3273 8.211869 ATTTCACCGAAATCTCACCGAAAGTG 62.212 42.308 0.00 0.00 41.65 3.16
1344 3274 2.036733 TCACCGAAATCTCACCGAAAGT 59.963 45.455 0.00 0.00 0.00 2.66
1345 3275 2.683968 TCACCGAAATCTCACCGAAAG 58.316 47.619 0.00 0.00 0.00 2.62
1346 3276 2.823924 TCACCGAAATCTCACCGAAA 57.176 45.000 0.00 0.00 0.00 3.46
1347 3277 2.823924 TTCACCGAAATCTCACCGAA 57.176 45.000 0.00 0.00 0.00 4.30
1348 3278 2.823924 TTTCACCGAAATCTCACCGA 57.176 45.000 0.00 0.00 0.00 4.69
1349 3279 3.435327 TGAATTTCACCGAAATCTCACCG 59.565 43.478 2.62 0.00 40.77 4.94
1350 3280 4.723248 GTGAATTTCACCGAAATCTCACC 58.277 43.478 17.07 11.23 40.77 4.02
1373 3303 7.229306 AGTGTCTGCTGAAATTACTGAAATTCA 59.771 33.333 0.00 0.00 36.76 2.57
1374 3304 7.536622 CAGTGTCTGCTGAAATTACTGAAATTC 59.463 37.037 16.51 0.00 36.76 2.17
1375 3305 7.229306 TCAGTGTCTGCTGAAATTACTGAAATT 59.771 33.333 19.37 0.00 41.93 1.82
1376 3306 6.712095 TCAGTGTCTGCTGAAATTACTGAAAT 59.288 34.615 19.37 0.00 41.93 2.17
1377 3307 6.054941 TCAGTGTCTGCTGAAATTACTGAAA 58.945 36.000 19.37 7.04 41.93 2.69
1378 3308 5.610398 TCAGTGTCTGCTGAAATTACTGAA 58.390 37.500 19.37 10.01 41.93 3.02
1379 3309 5.213891 TCAGTGTCTGCTGAAATTACTGA 57.786 39.130 18.49 18.49 41.93 3.41
1388 3318 8.565896 AAACATAATATTTCAGTGTCTGCTGA 57.434 30.769 0.00 0.00 43.03 4.26
1389 3319 7.637519 CGAAACATAATATTTCAGTGTCTGCTG 59.362 37.037 0.00 0.00 36.09 4.41
1390 3320 7.201644 CCGAAACATAATATTTCAGTGTCTGCT 60.202 37.037 0.00 0.00 36.09 4.24
1391 3321 6.907212 CCGAAACATAATATTTCAGTGTCTGC 59.093 38.462 0.00 0.00 36.09 4.26
1392 3322 6.907212 GCCGAAACATAATATTTCAGTGTCTG 59.093 38.462 0.00 0.00 36.09 3.51
1393 3323 6.038271 GGCCGAAACATAATATTTCAGTGTCT 59.962 38.462 0.00 0.00 36.09 3.41
1394 3324 6.183360 TGGCCGAAACATAATATTTCAGTGTC 60.183 38.462 0.00 0.00 36.09 3.67
1395 3325 5.650266 TGGCCGAAACATAATATTTCAGTGT 59.350 36.000 0.00 0.00 36.09 3.55
1396 3326 6.130298 TGGCCGAAACATAATATTTCAGTG 57.870 37.500 0.00 0.00 36.09 3.66
1397 3327 6.767524 TTGGCCGAAACATAATATTTCAGT 57.232 33.333 0.00 0.00 36.09 3.41
1398 3328 8.647143 ATTTTGGCCGAAACATAATATTTCAG 57.353 30.769 20.75 0.00 36.09 3.02
1404 3334 9.743057 CTGAAATATTTTGGCCGAAACATAATA 57.257 29.630 20.75 9.08 0.00 0.98
1405 3335 7.224557 GCTGAAATATTTTGGCCGAAACATAAT 59.775 33.333 20.75 7.42 0.00 1.28
1406 3336 6.533367 GCTGAAATATTTTGGCCGAAACATAA 59.467 34.615 20.75 7.15 0.00 1.90
1407 3337 6.039616 GCTGAAATATTTTGGCCGAAACATA 58.960 36.000 20.75 10.53 0.00 2.29
1408 3338 4.869861 GCTGAAATATTTTGGCCGAAACAT 59.130 37.500 20.75 12.14 0.00 2.71
1409 3339 4.241681 GCTGAAATATTTTGGCCGAAACA 58.758 39.130 20.75 9.96 0.00 2.83
1410 3340 4.241681 TGCTGAAATATTTTGGCCGAAAC 58.758 39.130 20.75 8.10 0.00 2.78
1411 3341 4.527509 TGCTGAAATATTTTGGCCGAAA 57.472 36.364 20.60 20.60 0.00 3.46
1412 3342 4.527509 TTGCTGAAATATTTTGGCCGAA 57.472 36.364 17.58 0.00 0.00 4.30
1413 3343 4.734398 ATTGCTGAAATATTTTGGCCGA 57.266 36.364 17.58 0.00 0.00 5.54
1414 3344 5.350914 TGAAATTGCTGAAATATTTTGGCCG 59.649 36.000 17.58 0.24 0.00 6.13
1415 3345 6.372381 ACTGAAATTGCTGAAATATTTTGGCC 59.628 34.615 17.58 0.00 0.00 5.36
1416 3346 7.368480 ACTGAAATTGCTGAAATATTTTGGC 57.632 32.000 15.06 15.06 0.00 4.52
1421 3351 9.956720 GTGCTATACTGAAATTGCTGAAATATT 57.043 29.630 0.00 0.00 0.00 1.28
1422 3352 9.123902 TGTGCTATACTGAAATTGCTGAAATAT 57.876 29.630 0.00 0.00 0.00 1.28
1423 3353 8.504812 TGTGCTATACTGAAATTGCTGAAATA 57.495 30.769 0.00 0.00 0.00 1.40
1424 3354 7.395190 TGTGCTATACTGAAATTGCTGAAAT 57.605 32.000 0.00 0.00 0.00 2.17
1425 3355 6.816134 TGTGCTATACTGAAATTGCTGAAA 57.184 33.333 0.00 0.00 0.00 2.69
1426 3356 6.206438 TGTTGTGCTATACTGAAATTGCTGAA 59.794 34.615 0.00 0.00 0.00 3.02
1427 3357 5.704978 TGTTGTGCTATACTGAAATTGCTGA 59.295 36.000 0.00 0.00 0.00 4.26
1428 3358 5.941733 TGTTGTGCTATACTGAAATTGCTG 58.058 37.500 0.00 0.00 0.00 4.41
1429 3359 6.573664 TTGTTGTGCTATACTGAAATTGCT 57.426 33.333 0.00 0.00 0.00 3.91
1430 3360 7.009540 GGAATTGTTGTGCTATACTGAAATTGC 59.990 37.037 0.00 0.00 0.00 3.56
1431 3361 8.028354 TGGAATTGTTGTGCTATACTGAAATTG 58.972 33.333 0.00 0.00 0.00 2.32
1432 3362 8.121305 TGGAATTGTTGTGCTATACTGAAATT 57.879 30.769 0.00 0.00 0.00 1.82
1433 3363 7.701539 TGGAATTGTTGTGCTATACTGAAAT 57.298 32.000 0.00 0.00 0.00 2.17
1434 3364 7.517614 TTGGAATTGTTGTGCTATACTGAAA 57.482 32.000 0.00 0.00 0.00 2.69
1435 3365 7.701539 ATTGGAATTGTTGTGCTATACTGAA 57.298 32.000 0.00 0.00 0.00 3.02
1436 3366 8.978874 ATATTGGAATTGTTGTGCTATACTGA 57.021 30.769 0.00 0.00 0.00 3.41
1441 3371 9.941325 TGAAAAATATTGGAATTGTTGTGCTAT 57.059 25.926 0.00 0.00 0.00 2.97
1442 3372 9.770097 TTGAAAAATATTGGAATTGTTGTGCTA 57.230 25.926 0.00 0.00 0.00 3.49
1443 3373 8.674263 TTGAAAAATATTGGAATTGTTGTGCT 57.326 26.923 0.00 0.00 0.00 4.40
1444 3374 9.727627 TTTTGAAAAATATTGGAATTGTTGTGC 57.272 25.926 0.00 0.00 0.00 4.57
1486 3416 8.620416 CCGACATATTCACTTGAATCCAATTAA 58.380 33.333 7.74 0.00 43.17 1.40
1487 3417 7.773224 ACCGACATATTCACTTGAATCCAATTA 59.227 33.333 7.74 0.00 43.17 1.40
1488 3418 6.603201 ACCGACATATTCACTTGAATCCAATT 59.397 34.615 7.74 0.00 43.17 2.32
1489 3419 6.122277 ACCGACATATTCACTTGAATCCAAT 58.878 36.000 7.74 0.00 43.17 3.16
1490 3420 5.496556 ACCGACATATTCACTTGAATCCAA 58.503 37.500 7.74 0.00 43.17 3.53
1491 3421 5.097742 ACCGACATATTCACTTGAATCCA 57.902 39.130 7.74 0.00 43.17 3.41
1492 3422 5.116180 TGACCGACATATTCACTTGAATCC 58.884 41.667 7.74 0.00 43.17 3.01
1493 3423 6.851222 ATGACCGACATATTCACTTGAATC 57.149 37.500 7.74 0.00 43.17 2.52
1494 3424 7.415541 CCAAATGACCGACATATTCACTTGAAT 60.416 37.037 9.37 9.37 45.77 2.57
1495 3425 6.128035 CCAAATGACCGACATATTCACTTGAA 60.128 38.462 0.00 0.00 38.38 2.69
1496 3426 5.353956 CCAAATGACCGACATATTCACTTGA 59.646 40.000 0.00 0.00 38.38 3.02
1497 3427 5.572211 CCAAATGACCGACATATTCACTTG 58.428 41.667 0.00 0.00 38.38 3.16
1498 3428 4.096382 GCCAAATGACCGACATATTCACTT 59.904 41.667 0.00 0.00 38.38 3.16
1499 3429 3.627577 GCCAAATGACCGACATATTCACT 59.372 43.478 0.00 0.00 38.38 3.41
1500 3430 3.627577 AGCCAAATGACCGACATATTCAC 59.372 43.478 0.00 0.00 38.38 3.18
1501 3431 3.627123 CAGCCAAATGACCGACATATTCA 59.373 43.478 0.00 0.00 38.38 2.57
1502 3432 3.876914 TCAGCCAAATGACCGACATATTC 59.123 43.478 0.00 0.00 38.38 1.75
1503 3433 3.884895 TCAGCCAAATGACCGACATATT 58.115 40.909 0.00 0.00 38.38 1.28
1504 3434 3.558931 TCAGCCAAATGACCGACATAT 57.441 42.857 0.00 0.00 38.38 1.78
1505 3435 3.342377 TTCAGCCAAATGACCGACATA 57.658 42.857 0.00 0.00 38.38 2.29
1506 3436 2.198827 TTCAGCCAAATGACCGACAT 57.801 45.000 0.00 0.00 41.45 3.06
1507 3437 1.974265 TTTCAGCCAAATGACCGACA 58.026 45.000 0.00 0.00 0.00 4.35
1515 3445 3.903090 TCCAGTTTCCATTTCAGCCAAAT 59.097 39.130 0.00 0.00 34.79 2.32
1516 3446 3.303938 TCCAGTTTCCATTTCAGCCAAA 58.696 40.909 0.00 0.00 0.00 3.28
1517 3447 2.956132 TCCAGTTTCCATTTCAGCCAA 58.044 42.857 0.00 0.00 0.00 4.52
1518 3448 2.673775 TCCAGTTTCCATTTCAGCCA 57.326 45.000 0.00 0.00 0.00 4.75
1519 3449 4.021192 TGAATTCCAGTTTCCATTTCAGCC 60.021 41.667 2.27 0.00 0.00 4.85
1520 3450 4.925646 GTGAATTCCAGTTTCCATTTCAGC 59.074 41.667 2.27 0.00 0.00 4.26
1521 3451 6.016024 TCAGTGAATTCCAGTTTCCATTTCAG 60.016 38.462 2.27 0.00 0.00 3.02
1522 3452 5.832595 TCAGTGAATTCCAGTTTCCATTTCA 59.167 36.000 2.27 0.00 0.00 2.69
1523 3453 6.331369 TCAGTGAATTCCAGTTTCCATTTC 57.669 37.500 2.27 0.00 0.00 2.17
1524 3454 6.729690 TTCAGTGAATTCCAGTTTCCATTT 57.270 33.333 0.08 0.00 0.00 2.32
1525 3455 6.923199 ATTCAGTGAATTCCAGTTTCCATT 57.077 33.333 12.75 0.00 0.00 3.16
1526 3456 6.923199 AATTCAGTGAATTCCAGTTTCCAT 57.077 33.333 22.70 0.00 37.68 3.41
1527 3457 6.323482 TGAAATTCAGTGAATTCCAGTTTCCA 59.677 34.615 27.07 13.77 40.77 3.53
1528 3458 6.748132 TGAAATTCAGTGAATTCCAGTTTCC 58.252 36.000 27.07 11.94 40.77 3.13
1529 3459 7.864307 CTGAAATTCAGTGAATTCCAGTTTC 57.136 36.000 27.70 21.46 38.80 2.78
1544 3474 4.582656 ACCAACCGAAATCACTGAAATTCA 59.417 37.500 0.00 0.00 0.00 2.57
1545 3475 4.917415 CACCAACCGAAATCACTGAAATTC 59.083 41.667 0.00 0.00 0.00 2.17
1546 3476 4.795962 GCACCAACCGAAATCACTGAAATT 60.796 41.667 0.00 0.00 0.00 1.82
1547 3477 3.305335 GCACCAACCGAAATCACTGAAAT 60.305 43.478 0.00 0.00 0.00 2.17
1548 3478 2.034053 GCACCAACCGAAATCACTGAAA 59.966 45.455 0.00 0.00 0.00 2.69
1549 3479 1.606668 GCACCAACCGAAATCACTGAA 59.393 47.619 0.00 0.00 0.00 3.02
1550 3480 1.202758 AGCACCAACCGAAATCACTGA 60.203 47.619 0.00 0.00 0.00 3.41
1551 3481 1.069022 CAGCACCAACCGAAATCACTG 60.069 52.381 0.00 0.00 0.00 3.66
1552 3482 1.202758 TCAGCACCAACCGAAATCACT 60.203 47.619 0.00 0.00 0.00 3.41
1553 3483 1.234821 TCAGCACCAACCGAAATCAC 58.765 50.000 0.00 0.00 0.00 3.06
1554 3484 1.974265 TTCAGCACCAACCGAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
1555 3485 3.575965 ATTTCAGCACCAACCGAAATC 57.424 42.857 0.00 0.00 33.87 2.17
1556 3486 4.335400 AAATTTCAGCACCAACCGAAAT 57.665 36.364 0.00 0.00 39.20 2.17
1557 3487 3.810310 AAATTTCAGCACCAACCGAAA 57.190 38.095 0.00 0.00 0.00 3.46
1558 3488 3.810310 AAAATTTCAGCACCAACCGAA 57.190 38.095 0.00 0.00 0.00 4.30
1559 3489 3.383185 AGAAAAATTTCAGCACCAACCGA 59.617 39.130 8.47 0.00 39.61 4.69
1560 3490 3.490526 CAGAAAAATTTCAGCACCAACCG 59.509 43.478 8.47 0.00 39.61 4.44
1561 3491 4.692228 TCAGAAAAATTTCAGCACCAACC 58.308 39.130 8.47 0.00 39.61 3.77
1562 3492 5.006649 GGTTCAGAAAAATTTCAGCACCAAC 59.993 40.000 12.69 4.55 38.90 3.77
1563 3493 5.104982 AGGTTCAGAAAAATTTCAGCACCAA 60.105 36.000 17.44 0.00 40.53 3.67
1564 3494 4.405358 AGGTTCAGAAAAATTTCAGCACCA 59.595 37.500 17.44 0.00 40.53 4.17
1565 3495 4.746611 CAGGTTCAGAAAAATTTCAGCACC 59.253 41.667 10.57 10.57 39.18 5.01
1566 3496 5.591099 TCAGGTTCAGAAAAATTTCAGCAC 58.409 37.500 8.47 1.37 39.61 4.40
1567 3497 5.850557 TCAGGTTCAGAAAAATTTCAGCA 57.149 34.783 8.47 0.00 39.61 4.41
1568 3498 7.719778 ATTTCAGGTTCAGAAAAATTTCAGC 57.280 32.000 8.47 0.00 38.36 4.26
1569 3499 9.316730 TCAATTTCAGGTTCAGAAAAATTTCAG 57.683 29.630 8.47 0.74 38.36 3.02
1570 3500 9.664332 TTCAATTTCAGGTTCAGAAAAATTTCA 57.336 25.926 8.47 0.00 38.36 2.69
1574 3504 8.892723 GGTTTTCAATTTCAGGTTCAGAAAAAT 58.107 29.630 0.00 0.00 38.36 1.82
1575 3505 7.880195 TGGTTTTCAATTTCAGGTTCAGAAAAA 59.120 29.630 0.00 0.00 38.36 1.94
1576 3506 7.390027 TGGTTTTCAATTTCAGGTTCAGAAAA 58.610 30.769 0.00 0.00 38.36 2.29
1577 3507 6.940739 TGGTTTTCAATTTCAGGTTCAGAAA 58.059 32.000 0.00 0.00 39.11 2.52
1578 3508 6.537453 TGGTTTTCAATTTCAGGTTCAGAA 57.463 33.333 0.00 0.00 0.00 3.02
1579 3509 6.323482 TCATGGTTTTCAATTTCAGGTTCAGA 59.677 34.615 0.00 0.00 0.00 3.27
1580 3510 6.514947 TCATGGTTTTCAATTTCAGGTTCAG 58.485 36.000 0.00 0.00 0.00 3.02
1581 3511 6.477053 TCATGGTTTTCAATTTCAGGTTCA 57.523 33.333 0.00 0.00 0.00 3.18
1582 3512 7.148755 CGAATCATGGTTTTCAATTTCAGGTTC 60.149 37.037 0.00 0.00 0.00 3.62
1583 3513 6.646240 CGAATCATGGTTTTCAATTTCAGGTT 59.354 34.615 0.00 0.00 0.00 3.50
1584 3514 6.158598 CGAATCATGGTTTTCAATTTCAGGT 58.841 36.000 0.00 0.00 0.00 4.00
1585 3515 5.577945 CCGAATCATGGTTTTCAATTTCAGG 59.422 40.000 0.00 0.00 0.00 3.86
1586 3516 6.389091 TCCGAATCATGGTTTTCAATTTCAG 58.611 36.000 0.00 0.00 0.00 3.02
1587 3517 6.338214 TCCGAATCATGGTTTTCAATTTCA 57.662 33.333 0.00 0.00 0.00 2.69
1588 3518 7.201548 CCAATCCGAATCATGGTTTTCAATTTC 60.202 37.037 0.00 0.00 0.00 2.17
1589 3519 6.594937 CCAATCCGAATCATGGTTTTCAATTT 59.405 34.615 0.00 0.00 0.00 1.82
1590 3520 6.108015 CCAATCCGAATCATGGTTTTCAATT 58.892 36.000 0.00 0.00 0.00 2.32
1591 3521 5.187576 ACCAATCCGAATCATGGTTTTCAAT 59.812 36.000 0.00 0.00 43.47 2.57
1592 3522 4.526262 ACCAATCCGAATCATGGTTTTCAA 59.474 37.500 0.00 0.00 43.47 2.69
1593 3523 4.085733 ACCAATCCGAATCATGGTTTTCA 58.914 39.130 0.00 0.00 43.47 2.69
1594 3524 4.718940 ACCAATCCGAATCATGGTTTTC 57.281 40.909 0.00 0.00 43.47 2.29
1599 3529 2.378038 ACCAACCAATCCGAATCATGG 58.622 47.619 0.00 0.00 38.91 3.66
1600 3530 3.443329 TGAACCAACCAATCCGAATCATG 59.557 43.478 0.00 0.00 0.00 3.07
1601 3531 3.696045 TGAACCAACCAATCCGAATCAT 58.304 40.909 0.00 0.00 0.00 2.45
1602 3532 3.081061 CTGAACCAACCAATCCGAATCA 58.919 45.455 0.00 0.00 0.00 2.57
1603 3533 2.423538 CCTGAACCAACCAATCCGAATC 59.576 50.000 0.00 0.00 0.00 2.52
1604 3534 2.225017 ACCTGAACCAACCAATCCGAAT 60.225 45.455 0.00 0.00 0.00 3.34
1605 3535 1.144093 ACCTGAACCAACCAATCCGAA 59.856 47.619 0.00 0.00 0.00 4.30
1606 3536 0.768622 ACCTGAACCAACCAATCCGA 59.231 50.000 0.00 0.00 0.00 4.55
1607 3537 0.881118 CACCTGAACCAACCAATCCG 59.119 55.000 0.00 0.00 0.00 4.18
1651 3585 1.977544 CTCGTTGTCCGTCCTCCCT 60.978 63.158 0.00 0.00 37.94 4.20
1708 3642 4.240103 TCGATGCCCATGCCGAGG 62.240 66.667 0.00 0.00 36.33 4.63
1796 3730 2.577593 GGAGCCGCCGAAGTTACT 59.422 61.111 0.00 0.00 0.00 2.24
1936 3870 1.039233 CCATGAGGTTGTCCATGCCC 61.039 60.000 0.00 0.00 38.95 5.36
2032 4011 2.877691 GCCGGCAGGTTGTTCATC 59.122 61.111 24.80 0.00 40.50 2.92
2180 4159 3.070446 TCGTCGGCTACCATTGGATAAAT 59.930 43.478 10.37 0.00 0.00 1.40
2183 4162 1.338973 GTCGTCGGCTACCATTGGATA 59.661 52.381 10.37 0.00 0.00 2.59
2194 4191 3.374402 CACTCCTGGTCGTCGGCT 61.374 66.667 0.00 0.00 0.00 5.52
2385 4390 4.060288 CATGCATGCATGTGTGTTTTTC 57.940 40.909 40.30 8.24 46.20 2.29
2562 4599 8.789825 TTTGCCTGCATAAAAATAAACATGAT 57.210 26.923 0.00 0.00 0.00 2.45
2601 4638 1.421268 ACCCATCACAGCTCACTTGAA 59.579 47.619 0.00 0.00 0.00 2.69
2661 4698 7.129425 ACAATTAGTAGTCTCCATCTCCTTCT 58.871 38.462 0.00 0.00 0.00 2.85
2701 4745 4.647611 TGGTACTGATCGACAACCAAAAT 58.352 39.130 6.57 0.00 36.72 1.82
2711 4755 5.105351 ACATCACATCTTTGGTACTGATCGA 60.105 40.000 0.00 0.00 0.00 3.59
2712 4756 5.111989 ACATCACATCTTTGGTACTGATCG 58.888 41.667 0.00 0.00 0.00 3.69
2718 4762 6.978080 ACAAACAAACATCACATCTTTGGTAC 59.022 34.615 0.00 0.00 30.52 3.34
2733 4777 4.186077 TCCCCCTATCAACAAACAAACA 57.814 40.909 0.00 0.00 0.00 2.83
2898 5283 7.262772 TGACACAGGCTAGTTATTACATACAC 58.737 38.462 0.00 0.00 0.00 2.90
2900 5285 8.765219 CAATGACACAGGCTAGTTATTACATAC 58.235 37.037 8.33 0.00 0.00 2.39
2921 5306 3.258971 TGACACTGTCACACACAATGA 57.741 42.857 7.84 0.00 33.84 2.57
2925 5310 2.677337 CACAATGACACTGTCACACACA 59.323 45.455 14.20 0.00 45.65 3.72
2926 5311 2.935849 TCACAATGACACTGTCACACAC 59.064 45.455 14.20 0.00 45.65 3.82
3162 5591 4.406326 TCTTGTAAATGATGTACCGCCCTA 59.594 41.667 0.00 0.00 0.00 3.53
3287 5716 3.701542 AGATGGAAGCGTTGAGTATCTCA 59.298 43.478 0.00 0.00 38.87 3.27
3470 5899 0.098728 CGTCGTGGGATTTCATTGGC 59.901 55.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.