Multiple sequence alignment - TraesCS7D01G026600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G026600 chr7D 100.000 9174 0 0 1 9174 12896777 12905950 0.000000e+00 16942.0
1 TraesCS7D01G026600 chr7D 89.171 434 41 6 6458 6887 371800879 371801310 3.770000e-148 536.0
2 TraesCS7D01G026600 chr7D 81.693 579 81 19 2920 3481 386923483 386922913 8.390000e-125 459.0
3 TraesCS7D01G026600 chr7D 81.192 537 61 14 3481 3985 386922873 386922345 6.680000e-106 396.0
4 TraesCS7D01G026600 chr7D 87.931 58 5 2 7521 7577 593932241 593932297 5.940000e-07 67.6
5 TraesCS7D01G026600 chr7B 94.936 2271 65 19 542 2797 366039870 366042105 0.000000e+00 3511.0
6 TraesCS7D01G026600 chr7B 96.600 2000 51 9 6865 8863 366052158 366054141 0.000000e+00 3301.0
7 TraesCS7D01G026600 chr7B 96.152 1689 53 7 4225 5909 366046523 366048203 0.000000e+00 2748.0
8 TraesCS7D01G026600 chr7B 91.721 773 33 9 3490 4231 366042810 366043582 0.000000e+00 1044.0
9 TraesCS7D01G026600 chr7B 95.714 560 22 2 5892 6451 366051607 366052164 0.000000e+00 900.0
10 TraesCS7D01G026600 chr7B 89.713 661 52 6 2834 3481 366042099 366042756 0.000000e+00 830.0
11 TraesCS7D01G026600 chr7B 91.718 483 28 9 64 545 366038559 366039030 0.000000e+00 660.0
12 TraesCS7D01G026600 chr7B 95.899 317 12 1 8858 9174 366054227 366054542 6.350000e-141 512.0
13 TraesCS7D01G026600 chr7B 82.540 504 75 10 2984 3481 158374422 158374918 1.830000e-116 431.0
14 TraesCS7D01G026600 chr7B 81.062 565 86 15 2921 3481 584187744 584187197 1.830000e-116 431.0
15 TraesCS7D01G026600 chr7B 83.162 487 51 9 3481 3939 584187157 584186674 5.120000e-112 416.0
16 TraesCS7D01G026600 chr7A 95.775 1988 68 9 4474 6456 409257553 409259529 0.000000e+00 3192.0
17 TraesCS7D01G026600 chr7A 96.196 1630 52 4 1181 2803 409253890 409255516 0.000000e+00 2658.0
18 TraesCS7D01G026600 chr7A 95.824 1341 48 5 7481 8820 409262666 409263999 0.000000e+00 2159.0
19 TraesCS7D01G026600 chr7A 92.174 1035 40 13 3481 4488 409256289 409257309 0.000000e+00 1424.0
20 TraesCS7D01G026600 chr7A 91.371 846 43 14 99 933 409252636 409253462 0.000000e+00 1131.0
21 TraesCS7D01G026600 chr7A 98.387 620 9 1 6875 7493 409259615 409260234 0.000000e+00 1088.0
22 TraesCS7D01G026600 chr7A 88.489 695 58 11 2805 3481 409255559 409256249 0.000000e+00 821.0
23 TraesCS7D01G026600 chr7A 96.865 319 8 2 8857 9174 409264067 409264384 4.880000e-147 532.0
24 TraesCS7D01G026600 chr7A 79.831 590 96 15 2909 3481 42799092 42799675 8.570000e-110 409.0
25 TraesCS7D01G026600 chr7A 92.000 100 7 1 7621 7719 11727558 11727459 1.240000e-28 139.0
26 TraesCS7D01G026600 chr7A 89.524 105 11 0 7615 7719 100247234 100247338 5.780000e-27 134.0
27 TraesCS7D01G026600 chr3D 91.355 1793 120 26 4313 6087 929532 927757 0.000000e+00 2420.0
28 TraesCS7D01G026600 chr3D 84.203 1342 133 31 993 2264 931741 930409 0.000000e+00 1230.0
29 TraesCS7D01G026600 chr3D 90.181 774 51 15 6872 7635 927454 926696 0.000000e+00 985.0
30 TraesCS7D01G026600 chr3D 84.151 713 62 25 7792 8500 926631 925966 2.160000e-180 643.0
31 TraesCS7D01G026600 chr3D 86.751 551 57 10 2264 2803 930363 929818 4.740000e-167 599.0
32 TraesCS7D01G026600 chr3D 80.247 567 92 11 2929 3481 343495302 343495862 8.570000e-110 409.0
33 TraesCS7D01G026600 chr3D 91.266 229 19 1 6226 6454 927683 927456 2.490000e-80 311.0
34 TraesCS7D01G026600 chr3D 87.907 215 23 2 3771 3982 477840346 477840132 5.500000e-62 250.0
35 TraesCS7D01G026600 chr3D 85.294 204 29 1 5976 6179 85882742 85882944 9.330000e-50 209.0
36 TraesCS7D01G026600 chr3D 81.275 251 43 4 5976 6223 8907527 8907278 5.620000e-47 200.0
37 TraesCS7D01G026600 chr3D 96.512 86 3 0 2804 2889 929776 929691 9.600000e-30 143.0
38 TraesCS7D01G026600 chr3A 91.061 1790 116 28 4313 6078 8590205 8591974 0.000000e+00 2379.0
39 TraesCS7D01G026600 chr3A 89.501 781 54 14 6865 7632 8592290 8593055 0.000000e+00 963.0
40 TraesCS7D01G026600 chr3A 87.032 802 63 24 7732 8500 8593042 8593835 0.000000e+00 867.0
41 TraesCS7D01G026600 chr3A 86.189 782 73 14 1083 1832 8588359 8589137 0.000000e+00 813.0
42 TraesCS7D01G026600 chr3A 94.824 425 21 1 6451 6874 365236072 365235648 0.000000e+00 662.0
43 TraesCS7D01G026600 chr3A 88.073 545 51 10 2264 2797 8589372 8589913 1.300000e-177 634.0
44 TraesCS7D01G026600 chr3A 82.800 750 86 32 8131 8863 8596716 8597439 1.680000e-176 630.0
45 TraesCS7D01G026600 chr3A 87.640 267 24 5 6191 6454 8592033 8592293 1.500000e-77 302.0
46 TraesCS7D01G026600 chr3A 90.909 165 14 1 8858 9022 8597522 8597685 4.310000e-53 220.0
47 TraesCS7D01G026600 chr3A 97.674 86 2 0 2804 2889 8589961 8590046 2.060000e-31 148.0
48 TraesCS7D01G026600 chr3B 92.809 1043 58 12 4313 5348 5582244 5583276 0.000000e+00 1495.0
49 TraesCS7D01G026600 chr3B 90.501 779 46 14 6865 7635 5584561 5585319 0.000000e+00 1003.0
50 TraesCS7D01G026600 chr3B 86.866 868 79 15 993 1832 5580435 5581295 0.000000e+00 939.0
51 TraesCS7D01G026600 chr3B 84.355 799 69 37 7732 8500 5585303 5586075 0.000000e+00 732.0
52 TraesCS7D01G026600 chr3B 87.154 615 52 20 5494 6087 5583652 5584260 0.000000e+00 673.0
53 TraesCS7D01G026600 chr3B 94.976 418 21 0 6451 6868 677604665 677604248 0.000000e+00 656.0
54 TraesCS7D01G026600 chr3B 94.952 416 19 2 6453 6868 438156735 438156322 0.000000e+00 651.0
55 TraesCS7D01G026600 chr3B 94.524 420 21 2 6450 6868 583375316 583374898 0.000000e+00 647.0
56 TraesCS7D01G026600 chr3B 85.512 635 56 14 2176 2797 5581344 5581955 1.680000e-176 630.0
57 TraesCS7D01G026600 chr3B 89.773 264 21 3 6191 6454 5584307 5584564 5.310000e-87 333.0
58 TraesCS7D01G026600 chr3B 87.195 164 19 2 8926 9088 5586465 5586627 1.570000e-42 185.0
59 TraesCS7D01G026600 chr3B 97.500 80 2 0 2804 2883 5582003 5582082 4.470000e-28 137.0
60 TraesCS7D01G026600 chr4B 82.234 1092 120 32 2937 3969 368414769 368415845 0.000000e+00 874.0
61 TraesCS7D01G026600 chr4B 94.952 416 21 0 6451 6866 300036654 300037069 0.000000e+00 652.0
62 TraesCS7D01G026600 chr4B 84.428 533 50 13 3481 3980 95705408 95704876 2.300000e-135 494.0
63 TraesCS7D01G026600 chr4B 91.250 80 5 2 6802 6880 36455292 36455370 3.500000e-19 108.0
64 TraesCS7D01G026600 chr4B 92.308 39 3 0 250 288 322691270 322691232 1.000000e-03 56.5
65 TraesCS7D01G026600 chr4B 92.308 39 3 0 250 288 322769778 322769740 1.000000e-03 56.5
66 TraesCS7D01G026600 chr1B 95.444 417 18 1 6451 6867 670857927 670858342 0.000000e+00 664.0
67 TraesCS7D01G026600 chr1B 95.215 418 20 0 6451 6868 591222240 591222657 0.000000e+00 662.0
68 TraesCS7D01G026600 chr1B 83.493 521 51 15 3482 3970 308540920 308540403 3.910000e-123 453.0
69 TraesCS7D01G026600 chr6B 95.377 411 19 0 6458 6868 491632763 491632353 0.000000e+00 654.0
70 TraesCS7D01G026600 chr6B 81.053 285 39 13 5976 6251 81064920 81064642 7.220000e-51 213.0
71 TraesCS7D01G026600 chr6B 89.796 49 5 0 249 297 686850292 686850244 7.690000e-06 63.9
72 TraesCS7D01G026600 chr4A 94.952 416 20 1 6451 6866 366924229 366923815 0.000000e+00 651.0
73 TraesCS7D01G026600 chr5D 93.580 405 23 3 6480 6882 298859419 298859822 1.320000e-167 601.0
74 TraesCS7D01G026600 chr5D 81.356 590 82 16 2908 3481 429052713 429052136 1.090000e-123 455.0
75 TraesCS7D01G026600 chr5D 82.288 542 50 25 3477 3986 429052101 429051574 2.370000e-115 427.0
76 TraesCS7D01G026600 chr5D 81.349 504 73 13 2915 3402 384345442 384344944 3.110000e-104 390.0
77 TraesCS7D01G026600 chr5D 79.649 570 92 14 2908 3459 60213830 60213267 1.120000e-103 388.0
78 TraesCS7D01G026600 chr4D 85.569 492 39 9 3481 3941 65146826 65146336 3.850000e-133 486.0
79 TraesCS7D01G026600 chr4D 92.500 40 3 0 249 288 179848281 179848320 3.580000e-04 58.4
80 TraesCS7D01G026600 chr2D 81.424 576 89 12 2921 3481 205587527 205588099 1.090000e-123 455.0
81 TraesCS7D01G026600 chr2D 80.516 426 61 14 3067 3478 53654126 53654543 3.220000e-79 307.0
82 TraesCS7D01G026600 chr2D 89.286 56 4 2 262 315 312061452 312061507 1.650000e-07 69.4
83 TraesCS7D01G026600 chr1D 83.114 533 56 18 3477 3977 400008934 400008404 1.090000e-123 455.0
84 TraesCS7D01G026600 chr1D 80.496 282 45 8 5976 6251 131289263 131288986 3.360000e-49 207.0
85 TraesCS7D01G026600 chr1D 92.500 40 3 0 249 288 240611363 240611324 3.580000e-04 58.4
86 TraesCS7D01G026600 chrUn 83.271 532 49 16 3481 3980 380790571 380791094 3.910000e-123 453.0
87 TraesCS7D01G026600 chr5A 83.271 532 49 12 3481 3980 544721287 544720764 3.910000e-123 453.0
88 TraesCS7D01G026600 chr5A 83.083 532 50 16 3481 3980 544787147 544786624 1.820000e-121 448.0
89 TraesCS7D01G026600 chr5A 77.699 704 116 21 2987 3661 489842785 489842094 8.640000e-105 392.0
90 TraesCS7D01G026600 chr5A 85.906 298 35 2 3481 3774 544743320 544743026 2.490000e-80 311.0
91 TraesCS7D01G026600 chr5A 78.986 276 50 7 5981 6251 45962826 45962554 2.030000e-41 182.0
92 TraesCS7D01G026600 chr5A 95.506 89 4 0 7631 7719 709391466 709391554 9.600000e-30 143.0
93 TraesCS7D01G026600 chr2B 80.137 584 94 11 2914 3481 83950625 83950048 5.120000e-112 416.0
94 TraesCS7D01G026600 chr6A 79.872 467 74 11 3030 3481 530990356 530990817 3.200000e-84 324.0
95 TraesCS7D01G026600 chr6A 86.667 120 14 2 7601 7719 505435841 505435959 2.080000e-26 132.0
96 TraesCS7D01G026600 chr6D 81.910 199 25 10 7526 7719 36116273 36116081 3.430000e-34 158.0
97 TraesCS7D01G026600 chr6D 92.500 40 2 1 249 288 385637192 385637230 1.000000e-03 56.5
98 TraesCS7D01G026600 chr5B 91.919 99 7 1 7621 7719 86479576 86479673 4.470000e-28 137.0
99 TraesCS7D01G026600 chr5B 82.075 106 17 2 7516 7619 637385704 637385809 1.270000e-13 89.8
100 TraesCS7D01G026600 chr2A 91.919 99 6 1 7621 7719 5637356 5637452 4.470000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G026600 chr7D 12896777 12905950 9173 False 16942.000000 16942 100.000000 1 9174 1 chr7D.!!$F1 9173
1 TraesCS7D01G026600 chr7D 386922345 386923483 1138 True 427.500000 459 81.442500 2920 3985 2 chr7D.!!$R1 1065
2 TraesCS7D01G026600 chr7B 366038559 366054542 15983 False 1688.250000 3511 94.056625 64 9174 8 chr7B.!!$F2 9110
3 TraesCS7D01G026600 chr7B 584186674 584187744 1070 True 423.500000 431 82.112000 2921 3939 2 chr7B.!!$R1 1018
4 TraesCS7D01G026600 chr7A 409252636 409264384 11748 False 1625.625000 3192 94.385125 99 9174 8 chr7A.!!$F3 9075
5 TraesCS7D01G026600 chr7A 42799092 42799675 583 False 409.000000 409 79.831000 2909 3481 1 chr7A.!!$F1 572
6 TraesCS7D01G026600 chr3D 925966 931741 5775 True 904.428571 2420 89.202714 993 8500 7 chr3D.!!$R3 7507
7 TraesCS7D01G026600 chr3D 343495302 343495862 560 False 409.000000 409 80.247000 2929 3481 1 chr3D.!!$F2 552
8 TraesCS7D01G026600 chr3A 8588359 8597685 9326 False 772.888889 2379 88.986556 1083 9022 9 chr3A.!!$F1 7939
9 TraesCS7D01G026600 chr3B 5580435 5586627 6192 False 680.777778 1495 89.073889 993 9088 9 chr3B.!!$F1 8095
10 TraesCS7D01G026600 chr4B 368414769 368415845 1076 False 874.000000 874 82.234000 2937 3969 1 chr4B.!!$F3 1032
11 TraesCS7D01G026600 chr4B 95704876 95705408 532 True 494.000000 494 84.428000 3481 3980 1 chr4B.!!$R1 499
12 TraesCS7D01G026600 chr1B 308540403 308540920 517 True 453.000000 453 83.493000 3482 3970 1 chr1B.!!$R1 488
13 TraesCS7D01G026600 chr5D 429051574 429052713 1139 True 441.000000 455 81.822000 2908 3986 2 chr5D.!!$R3 1078
14 TraesCS7D01G026600 chr5D 60213267 60213830 563 True 388.000000 388 79.649000 2908 3459 1 chr5D.!!$R1 551
15 TraesCS7D01G026600 chr2D 205587527 205588099 572 False 455.000000 455 81.424000 2921 3481 1 chr2D.!!$F2 560
16 TraesCS7D01G026600 chr1D 400008404 400008934 530 True 455.000000 455 83.114000 3477 3977 1 chr1D.!!$R3 500
17 TraesCS7D01G026600 chrUn 380790571 380791094 523 False 453.000000 453 83.271000 3481 3980 1 chrUn.!!$F1 499
18 TraesCS7D01G026600 chr5A 544720764 544721287 523 True 453.000000 453 83.271000 3481 3980 1 chr5A.!!$R3 499
19 TraesCS7D01G026600 chr5A 544786624 544787147 523 True 448.000000 448 83.083000 3481 3980 1 chr5A.!!$R5 499
20 TraesCS7D01G026600 chr5A 489842094 489842785 691 True 392.000000 392 77.699000 2987 3661 1 chr5A.!!$R2 674
21 TraesCS7D01G026600 chr2B 83950048 83950625 577 True 416.000000 416 80.137000 2914 3481 1 chr2B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 1684 0.179070 GATTCTTCCCCACGCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71 F
820 1685 0.618968 ATTCTTCCCCACGCTCTCCT 60.619 55.000 0.00 0.00 0.00 3.69 F
1927 3023 0.310543 GCAACTGCAACGTCATTGGA 59.689 50.000 0.00 0.00 41.59 3.53 F
3353 4634 1.081242 GGCGTCGTTACCTCGTTGA 60.081 57.895 0.00 0.00 0.00 3.18 F
4158 5561 0.251121 TAGCCACAACCCACCATGTG 60.251 55.000 0.00 0.00 45.06 3.21 F
4406 8757 1.145738 AGACAGGTCCTGTGCCATTTT 59.854 47.619 29.53 1.13 45.44 1.82 F
5161 9781 1.340017 GCCTGTTCTGCAATCCTGGTA 60.340 52.381 0.00 0.00 0.00 3.25 F
6120 14467 0.179029 ACCACTGCCACTGGTTGTAC 60.179 55.000 0.00 0.00 39.07 2.90 F
6851 15201 0.843984 CCGGGTGGTAGGATGGATTT 59.156 55.000 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 3023 1.629043 TCCTAACGCCACTGACTTCT 58.371 50.000 0.00 0.0 0.00 2.85 R
2250 3348 3.607422 TTCATGCAGACACACTTTTCG 57.393 42.857 0.00 0.0 0.00 3.46 R
3923 5310 0.795085 GCGATGCATACAGCCATCTC 59.205 55.000 0.00 0.0 44.83 2.75 R
5161 9781 6.869913 CACAGAAAAATAATGTCATTGGCTGT 59.130 34.615 8.39 8.9 30.73 4.40 R
5765 10678 2.647529 TCACATTCATCGCGTACAGT 57.352 45.000 5.77 0.0 0.00 3.55 R
5969 14313 5.539582 TTTGTATTGGTACAGATGCGAAC 57.460 39.130 0.00 0.0 41.56 3.95 R
6832 15182 0.843984 AAATCCATCCTACCACCCGG 59.156 55.000 0.00 0.0 38.77 5.73 R
7707 18523 0.184692 TCCATGTGGAGTTGGTTGCA 59.815 50.000 0.00 0.0 39.78 4.08 R
8366 19220 0.977395 GGTCCAGTTACACTCTGCCT 59.023 55.000 0.00 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.559148 TTTTTGTATGGCCATGGTTTTCT 57.441 34.783 29.04 1.85 0.00 2.52
38 39 4.533919 TTTGTATGGCCATGGTTTTCTG 57.466 40.909 29.04 0.00 0.00 3.02
39 40 3.448093 TGTATGGCCATGGTTTTCTGA 57.552 42.857 29.04 1.03 0.00 3.27
40 41 3.979911 TGTATGGCCATGGTTTTCTGAT 58.020 40.909 29.04 0.00 0.00 2.90
41 42 4.352009 TGTATGGCCATGGTTTTCTGATT 58.648 39.130 29.04 0.00 0.00 2.57
42 43 4.776837 TGTATGGCCATGGTTTTCTGATTT 59.223 37.500 29.04 0.00 0.00 2.17
43 44 4.914177 ATGGCCATGGTTTTCTGATTTT 57.086 36.364 20.04 0.00 0.00 1.82
44 45 4.703379 TGGCCATGGTTTTCTGATTTTT 57.297 36.364 14.67 0.00 0.00 1.94
45 46 4.640364 TGGCCATGGTTTTCTGATTTTTC 58.360 39.130 14.67 0.00 0.00 2.29
46 47 4.347583 TGGCCATGGTTTTCTGATTTTTCT 59.652 37.500 14.67 0.00 0.00 2.52
47 48 5.541868 TGGCCATGGTTTTCTGATTTTTCTA 59.458 36.000 14.67 0.00 0.00 2.10
48 49 6.101997 GGCCATGGTTTTCTGATTTTTCTAG 58.898 40.000 14.67 0.00 0.00 2.43
49 50 6.071391 GGCCATGGTTTTCTGATTTTTCTAGA 60.071 38.462 14.67 0.00 0.00 2.43
50 51 7.031975 GCCATGGTTTTCTGATTTTTCTAGAG 58.968 38.462 14.67 0.00 0.00 2.43
51 52 7.031975 CCATGGTTTTCTGATTTTTCTAGAGC 58.968 38.462 2.57 0.00 0.00 4.09
52 53 7.309377 CCATGGTTTTCTGATTTTTCTAGAGCA 60.309 37.037 2.57 0.00 0.00 4.26
53 54 7.765695 TGGTTTTCTGATTTTTCTAGAGCAT 57.234 32.000 0.00 0.00 0.00 3.79
54 55 8.181904 TGGTTTTCTGATTTTTCTAGAGCATT 57.818 30.769 0.00 0.00 0.00 3.56
55 56 8.641541 TGGTTTTCTGATTTTTCTAGAGCATTT 58.358 29.630 0.00 0.00 0.00 2.32
56 57 9.481340 GGTTTTCTGATTTTTCTAGAGCATTTT 57.519 29.630 0.00 0.00 0.00 1.82
160 162 7.872483 CCTAAGAAAAGGCATGTACAACAAAAT 59.128 33.333 0.00 0.00 0.00 1.82
215 217 1.761784 ACAATTTGCTTGCTCCACCAA 59.238 42.857 0.00 0.00 38.50 3.67
314 325 7.921786 ATCTACTTCCGTGAAATTTCATGAA 57.078 32.000 32.59 27.51 44.92 2.57
320 331 9.927668 ACTTCCGTGAAATTTCATGAATTTATT 57.072 25.926 32.59 13.24 45.54 1.40
415 427 4.002906 AGGCGTGACTGTATTTTCTTCA 57.997 40.909 0.00 0.00 0.00 3.02
420 432 5.107104 GCGTGACTGTATTTTCTTCATCACA 60.107 40.000 0.00 0.00 35.95 3.58
654 1516 4.278975 AGGATCTCGAAAAACTTCAGCT 57.721 40.909 0.00 0.00 0.00 4.24
757 1619 3.058224 GGAATCAAAACCGTTCTCTGGTG 60.058 47.826 0.00 0.00 40.35 4.17
819 1684 0.179070 GATTCTTCCCCACGCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
820 1685 0.618968 ATTCTTCCCCACGCTCTCCT 60.619 55.000 0.00 0.00 0.00 3.69
1127 1992 4.720902 CCAGATGCCACCGCCACA 62.721 66.667 0.00 0.00 0.00 4.17
1254 2305 2.057922 CCCCAGATGTATTACCAGCCT 58.942 52.381 0.00 0.00 0.00 4.58
1455 2533 1.291877 GAGCAAGGAAGAAGCGCGAA 61.292 55.000 12.10 0.00 0.00 4.70
1716 2800 4.245660 TCTGCAAGCACAAGTGAGTATAC 58.754 43.478 4.04 0.00 0.00 1.47
1785 2879 3.367395 GGAGCCCTTTCAGTGTAAAATGC 60.367 47.826 0.00 0.00 0.00 3.56
1882 2978 1.072806 ACTGCTGATTCAGGACAAGCA 59.927 47.619 15.28 5.90 38.36 3.91
1892 2988 1.670811 CAGGACAAGCAACAAACGACT 59.329 47.619 0.00 0.00 0.00 4.18
1927 3023 0.310543 GCAACTGCAACGTCATTGGA 59.689 50.000 0.00 0.00 41.59 3.53
2131 3229 4.302455 AGGATTCACGAGCTATGATTTCG 58.698 43.478 1.14 0.00 40.02 3.46
2173 3271 9.567776 TTGTTATGAAACTAGAAAGATGAACCA 57.432 29.630 0.00 0.00 36.51 3.67
2250 3348 6.808704 GCTCCATTAATTGACAGTTTCCTTTC 59.191 38.462 0.00 0.00 0.00 2.62
2271 3369 3.625313 TCGAAAAGTGTGTCTGCATGAAA 59.375 39.130 0.00 0.00 0.00 2.69
2316 3482 7.892241 AGAACTAAACTACTGTATGACCCTGTA 59.108 37.037 0.00 0.00 0.00 2.74
2551 3723 7.789341 TCGTTTCATATTTGTGATTTTTCCG 57.211 32.000 0.00 0.00 0.00 4.30
2560 3732 3.546724 TGTGATTTTTCCGTTCACCTGA 58.453 40.909 0.00 0.00 39.17 3.86
2682 3867 5.661312 TGTATTTATACCTGCTGTCAGTCCT 59.339 40.000 0.93 0.00 38.66 3.85
2854 4082 9.336462 AGAGATATCCTTGATTGACATCCTTAT 57.664 33.333 0.00 0.00 0.00 1.73
2910 4138 3.249189 AAGGAGAGCAACCGGCCA 61.249 61.111 0.00 0.00 46.50 5.36
3225 4499 1.153429 GGTAGACGTCACCCATGGC 60.153 63.158 19.50 0.00 0.00 4.40
3244 4521 2.187946 GTGCTGGATGACGGAGGG 59.812 66.667 0.00 0.00 0.00 4.30
3247 4524 3.866582 CTGGATGACGGAGGGGGC 61.867 72.222 0.00 0.00 0.00 5.80
3269 4549 2.355115 GTGTTCCGGCCAGGGATT 59.645 61.111 2.24 0.00 41.52 3.01
3271 4551 2.355115 GTTCCGGCCAGGGATTGT 59.645 61.111 2.24 0.00 41.52 2.71
3353 4634 1.081242 GGCGTCGTTACCTCGTTGA 60.081 57.895 0.00 0.00 0.00 3.18
3474 4757 2.681319 CCATGGGGGCATCATCTTTA 57.319 50.000 2.85 0.00 0.00 1.85
3504 4832 2.028130 CAGGTCTCCGTATGCTTCTCT 58.972 52.381 0.00 0.00 0.00 3.10
3643 4995 3.354678 GCTGTTTGGCGTCATGGT 58.645 55.556 0.00 0.00 0.00 3.55
3644 4996 1.081242 GCTGTTTGGCGTCATGGTG 60.081 57.895 0.00 0.00 0.00 4.17
3645 4997 1.580942 CTGTTTGGCGTCATGGTGG 59.419 57.895 0.00 0.00 0.00 4.61
3765 5120 1.118838 ATGCTGAGGGTCTGCTAGAC 58.881 55.000 0.00 7.52 44.32 2.59
3773 5154 1.881602 GTCTGCTAGACCGTTCGGT 59.118 57.895 16.91 16.91 39.28 4.69
3923 5310 6.446781 AGACCTTGTTGAATGATGCAATAG 57.553 37.500 0.00 0.00 0.00 1.73
4093 5484 3.076735 TCCTAGGCCTATCTCCCCTTTA 58.923 50.000 14.30 0.00 0.00 1.85
4158 5561 0.251121 TAGCCACAACCCACCATGTG 60.251 55.000 0.00 0.00 45.06 3.21
4173 5576 1.475280 CATGTGACCTCCATGGCAAAG 59.525 52.381 6.96 0.00 40.22 2.77
4406 8757 1.145738 AGACAGGTCCTGTGCCATTTT 59.854 47.619 29.53 1.13 45.44 1.82
4749 9366 1.453928 GCATTTAGCCCTCCCGCTT 60.454 57.895 0.00 0.00 40.39 4.68
5080 9698 3.243771 GGGTCGTGATAATGTCCTCGAAT 60.244 47.826 0.00 0.00 35.29 3.34
5161 9781 1.340017 GCCTGTTCTGCAATCCTGGTA 60.340 52.381 0.00 0.00 0.00 3.25
5327 9949 6.164176 GGTACCCGATTTTGATAGGTATGAG 58.836 44.000 0.00 0.00 35.62 2.90
5512 10411 7.201821 CCACCAGCTATAAAATTTCAGGTTAGG 60.202 40.741 0.00 0.00 0.00 2.69
5649 10562 7.885399 GTCCTATAAGCTGGTGGATGAATTTAT 59.115 37.037 0.00 0.00 0.00 1.40
5683 10596 5.751243 TTTGCTTTTCTGTTGACCTCTAC 57.249 39.130 0.00 0.00 0.00 2.59
5765 10678 4.524714 AGCAGTACAACAAGCTAGAGAGAA 59.475 41.667 0.00 0.00 35.19 2.87
5848 10762 9.713740 GCTTTCTGATTTAGTTAATGTCATCTG 57.286 33.333 0.00 0.00 0.00 2.90
5850 10764 9.958180 TTTCTGATTTAGTTAATGTCATCTGGA 57.042 29.630 0.00 0.00 0.00 3.86
5969 14313 4.142795 ACTCATGCTCTGCGTAGATATACG 60.143 45.833 15.34 15.34 45.39 3.06
5970 14314 3.751698 TCATGCTCTGCGTAGATATACGT 59.248 43.478 19.99 0.00 44.53 3.57
6120 14467 0.179029 ACCACTGCCACTGGTTGTAC 60.179 55.000 0.00 0.00 39.07 2.90
6135 14482 7.817478 CACTGGTTGTACATACATTTAGACTCA 59.183 37.037 0.00 0.00 35.89 3.41
6190 14537 6.764379 TGATATCCTGCCAATTATCAACGTA 58.236 36.000 0.00 0.00 0.00 3.57
6408 14755 4.344102 CCACGAGGTATCCATCCTTTTCTA 59.656 45.833 0.00 0.00 35.20 2.10
6418 14768 9.535878 GTATCCATCCTTTTCTAAACTCTAGTG 57.464 37.037 0.00 0.00 0.00 2.74
6500 14850 6.759497 ATAGGACAAATGTTTCCTACAAGC 57.241 37.500 0.00 0.00 45.37 4.01
6501 14851 4.469657 AGGACAAATGTTTCCTACAAGCA 58.530 39.130 0.00 0.00 40.70 3.91
6504 14854 5.186996 ACAAATGTTTCCTACAAGCAGTG 57.813 39.130 0.00 0.00 40.89 3.66
6505 14855 4.037923 ACAAATGTTTCCTACAAGCAGTGG 59.962 41.667 0.00 0.00 40.89 4.00
6506 14856 3.508845 ATGTTTCCTACAAGCAGTGGT 57.491 42.857 0.00 0.00 40.89 4.16
6508 14858 4.002906 TGTTTCCTACAAGCAGTGGTAG 57.997 45.455 0.00 0.00 37.36 3.18
6509 14859 3.389983 TGTTTCCTACAAGCAGTGGTAGT 59.610 43.478 0.00 0.00 36.17 2.73
6510 14860 4.141574 TGTTTCCTACAAGCAGTGGTAGTT 60.142 41.667 0.00 0.00 36.17 2.24
6511 14861 5.070714 TGTTTCCTACAAGCAGTGGTAGTTA 59.929 40.000 0.00 0.00 36.17 2.24
6512 14862 4.796038 TCCTACAAGCAGTGGTAGTTAC 57.204 45.455 0.00 0.00 36.17 2.50
6513 14863 3.512724 TCCTACAAGCAGTGGTAGTTACC 59.487 47.826 0.00 1.25 46.62 2.85
6524 14874 2.968675 GGTAGTTACCATCACTTGCGT 58.031 47.619 3.45 0.00 45.73 5.24
6525 14875 3.332034 GGTAGTTACCATCACTTGCGTT 58.668 45.455 3.45 0.00 45.73 4.84
6526 14876 3.749609 GGTAGTTACCATCACTTGCGTTT 59.250 43.478 3.45 0.00 45.73 3.60
6527 14877 4.214758 GGTAGTTACCATCACTTGCGTTTT 59.785 41.667 3.45 0.00 45.73 2.43
6528 14878 4.223320 AGTTACCATCACTTGCGTTTTG 57.777 40.909 0.00 0.00 0.00 2.44
6529 14879 3.630312 AGTTACCATCACTTGCGTTTTGT 59.370 39.130 0.00 0.00 0.00 2.83
6530 14880 4.817464 AGTTACCATCACTTGCGTTTTGTA 59.183 37.500 0.00 0.00 0.00 2.41
6531 14881 5.472137 AGTTACCATCACTTGCGTTTTGTAT 59.528 36.000 0.00 0.00 0.00 2.29
6533 14883 3.568007 ACCATCACTTGCGTTTTGTATGT 59.432 39.130 0.00 0.00 0.00 2.29
6534 14884 4.037446 ACCATCACTTGCGTTTTGTATGTT 59.963 37.500 0.00 0.00 0.00 2.71
6535 14885 4.382457 CCATCACTTGCGTTTTGTATGTTG 59.618 41.667 0.00 0.00 0.00 3.33
6536 14886 4.624336 TCACTTGCGTTTTGTATGTTGT 57.376 36.364 0.00 0.00 0.00 3.32
6537 14887 5.736486 TCACTTGCGTTTTGTATGTTGTA 57.264 34.783 0.00 0.00 0.00 2.41
6538 14888 6.307031 TCACTTGCGTTTTGTATGTTGTAT 57.693 33.333 0.00 0.00 0.00 2.29
6539 14889 6.139435 TCACTTGCGTTTTGTATGTTGTATG 58.861 36.000 0.00 0.00 0.00 2.39
6540 14890 5.912396 CACTTGCGTTTTGTATGTTGTATGT 59.088 36.000 0.00 0.00 0.00 2.29
6541 14891 7.041984 TCACTTGCGTTTTGTATGTTGTATGTA 60.042 33.333 0.00 0.00 0.00 2.29
6542 14892 7.268235 CACTTGCGTTTTGTATGTTGTATGTAG 59.732 37.037 0.00 0.00 0.00 2.74
6543 14893 6.788684 TGCGTTTTGTATGTTGTATGTAGT 57.211 33.333 0.00 0.00 0.00 2.73
6544 14894 7.886405 TGCGTTTTGTATGTTGTATGTAGTA 57.114 32.000 0.00 0.00 0.00 1.82
6545 14895 8.481974 TGCGTTTTGTATGTTGTATGTAGTAT 57.518 30.769 0.00 0.00 0.00 2.12
6546 14896 8.597227 TGCGTTTTGTATGTTGTATGTAGTATC 58.403 33.333 0.00 0.00 0.00 2.24
6547 14897 8.814235 GCGTTTTGTATGTTGTATGTAGTATCT 58.186 33.333 0.00 0.00 0.00 1.98
6569 14919 8.792831 ATCTATAAAAACCGTGAGTATGTACG 57.207 34.615 0.00 0.00 39.83 3.67
6570 14920 7.761409 TCTATAAAAACCGTGAGTATGTACGT 58.239 34.615 0.00 0.00 38.56 3.57
6571 14921 4.977741 AAAAACCGTGAGTATGTACGTG 57.022 40.909 0.00 0.00 38.56 4.49
6572 14922 3.648339 AAACCGTGAGTATGTACGTGT 57.352 42.857 0.00 0.00 38.56 4.49
6573 14923 4.764679 AAACCGTGAGTATGTACGTGTA 57.235 40.909 0.00 0.00 38.56 2.90
6574 14924 4.346734 AACCGTGAGTATGTACGTGTAG 57.653 45.455 0.00 0.00 38.56 2.74
6575 14925 3.338249 ACCGTGAGTATGTACGTGTAGT 58.662 45.455 0.00 0.00 38.56 2.73
6576 14926 4.503910 ACCGTGAGTATGTACGTGTAGTA 58.496 43.478 0.00 0.00 38.56 1.82
6577 14927 5.118990 ACCGTGAGTATGTACGTGTAGTAT 58.881 41.667 0.00 0.00 38.56 2.12
6578 14928 5.007039 ACCGTGAGTATGTACGTGTAGTATG 59.993 44.000 0.00 0.00 38.56 2.39
6579 14929 5.007039 CCGTGAGTATGTACGTGTAGTATGT 59.993 44.000 0.00 0.00 38.56 2.29
6580 14930 6.200854 CCGTGAGTATGTACGTGTAGTATGTA 59.799 42.308 0.00 0.00 38.56 2.29
6581 14931 7.279342 CGTGAGTATGTACGTGTAGTATGTAG 58.721 42.308 0.00 0.00 37.69 2.74
6582 14932 7.043125 CGTGAGTATGTACGTGTAGTATGTAGT 60.043 40.741 0.00 0.00 37.69 2.73
6583 14933 9.249457 GTGAGTATGTACGTGTAGTATGTAGTA 57.751 37.037 0.00 0.00 37.69 1.82
6584 14934 9.987272 TGAGTATGTACGTGTAGTATGTAGTAT 57.013 33.333 0.00 0.00 37.69 2.12
6603 14953 9.524496 TGTAGTATATAACGATGATTGGGTAGT 57.476 33.333 0.00 0.00 0.00 2.73
6643 14993 9.661563 TTTAGGTAGTATGTACCATGTTTTGAG 57.338 33.333 8.41 0.00 39.99 3.02
6644 14994 7.253905 AGGTAGTATGTACCATGTTTTGAGT 57.746 36.000 8.41 0.00 39.99 3.41
6645 14995 8.370266 AGGTAGTATGTACCATGTTTTGAGTA 57.630 34.615 8.41 0.00 39.99 2.59
6646 14996 8.989131 AGGTAGTATGTACCATGTTTTGAGTAT 58.011 33.333 8.41 0.00 39.99 2.12
6647 14997 9.042008 GGTAGTATGTACCATGTTTTGAGTATG 57.958 37.037 0.00 0.00 37.53 2.39
6648 14998 7.553881 AGTATGTACCATGTTTTGAGTATGC 57.446 36.000 0.00 0.00 0.00 3.14
6649 14999 7.338710 AGTATGTACCATGTTTTGAGTATGCT 58.661 34.615 0.00 0.00 0.00 3.79
6650 15000 6.683974 ATGTACCATGTTTTGAGTATGCTC 57.316 37.500 3.51 3.51 41.97 4.26
6651 15001 5.804639 TGTACCATGTTTTGAGTATGCTCT 58.195 37.500 12.30 0.00 42.13 4.09
6652 15002 6.941857 TGTACCATGTTTTGAGTATGCTCTA 58.058 36.000 12.30 1.28 42.13 2.43
6653 15003 7.564793 TGTACCATGTTTTGAGTATGCTCTAT 58.435 34.615 12.30 0.00 42.13 1.98
6654 15004 8.046708 TGTACCATGTTTTGAGTATGCTCTATT 58.953 33.333 12.30 0.00 42.13 1.73
6655 15005 7.944729 ACCATGTTTTGAGTATGCTCTATTT 57.055 32.000 12.30 0.00 42.13 1.40
6656 15006 8.353423 ACCATGTTTTGAGTATGCTCTATTTT 57.647 30.769 12.30 0.00 42.13 1.82
6657 15007 9.461312 ACCATGTTTTGAGTATGCTCTATTTTA 57.539 29.630 12.30 0.00 42.13 1.52
6658 15008 9.722056 CCATGTTTTGAGTATGCTCTATTTTAC 57.278 33.333 12.30 3.08 42.13 2.01
6659 15009 9.425893 CATGTTTTGAGTATGCTCTATTTTACG 57.574 33.333 12.30 0.00 42.13 3.18
6660 15010 8.542497 TGTTTTGAGTATGCTCTATTTTACGT 57.458 30.769 12.30 0.00 42.13 3.57
6661 15011 9.642327 TGTTTTGAGTATGCTCTATTTTACGTA 57.358 29.630 12.30 0.00 42.13 3.57
6662 15012 9.897349 GTTTTGAGTATGCTCTATTTTACGTAC 57.103 33.333 12.30 0.00 42.13 3.67
6663 15013 9.642327 TTTTGAGTATGCTCTATTTTACGTACA 57.358 29.630 12.30 0.00 42.13 2.90
6664 15014 9.642327 TTTGAGTATGCTCTATTTTACGTACAA 57.358 29.630 12.30 0.00 42.13 2.41
6665 15015 9.642327 TTGAGTATGCTCTATTTTACGTACAAA 57.358 29.630 12.30 0.10 42.13 2.83
6666 15016 9.811995 TGAGTATGCTCTATTTTACGTACAAAT 57.188 29.630 12.30 15.27 42.13 2.32
6711 15061 5.520376 ACAAAAACTATGGGCTCATATGC 57.480 39.130 6.77 0.00 35.53 3.14
6712 15062 4.955450 ACAAAAACTATGGGCTCATATGCA 59.045 37.500 6.77 0.00 35.53 3.96
6713 15063 5.421693 ACAAAAACTATGGGCTCATATGCAA 59.578 36.000 6.77 0.00 35.53 4.08
6714 15064 6.070881 ACAAAAACTATGGGCTCATATGCAAA 60.071 34.615 6.77 0.00 35.53 3.68
6715 15065 6.736110 AAAACTATGGGCTCATATGCAAAT 57.264 33.333 6.77 0.00 35.53 2.32
6716 15066 6.736110 AAACTATGGGCTCATATGCAAATT 57.264 33.333 6.77 0.00 35.53 1.82
6717 15067 6.736110 AACTATGGGCTCATATGCAAATTT 57.264 33.333 6.77 0.00 35.53 1.82
6718 15068 6.736110 ACTATGGGCTCATATGCAAATTTT 57.264 33.333 6.77 0.00 35.53 1.82
6719 15069 7.128234 ACTATGGGCTCATATGCAAATTTTT 57.872 32.000 6.77 0.00 35.53 1.94
6720 15070 7.212274 ACTATGGGCTCATATGCAAATTTTTC 58.788 34.615 6.77 0.00 35.53 2.29
6721 15071 5.417754 TGGGCTCATATGCAAATTTTTCA 57.582 34.783 0.00 0.00 34.04 2.69
6722 15072 5.991861 TGGGCTCATATGCAAATTTTTCAT 58.008 33.333 0.00 7.57 34.04 2.57
6723 15073 7.122138 TGGGCTCATATGCAAATTTTTCATA 57.878 32.000 10.58 10.58 34.04 2.15
6724 15074 7.737869 TGGGCTCATATGCAAATTTTTCATAT 58.262 30.769 13.18 13.18 34.70 1.78
6725 15075 8.868103 TGGGCTCATATGCAAATTTTTCATATA 58.132 29.630 16.39 8.94 33.17 0.86
6726 15076 9.709495 GGGCTCATATGCAAATTTTTCATATAA 57.291 29.630 16.39 7.28 33.17 0.98
6815 15165 8.706322 AGTACCACATGATAGTATATGACACA 57.294 34.615 0.00 0.00 0.00 3.72
6816 15166 9.314133 AGTACCACATGATAGTATATGACACAT 57.686 33.333 0.00 0.00 0.00 3.21
6817 15167 9.358872 GTACCACATGATAGTATATGACACATG 57.641 37.037 0.00 0.00 39.72 3.21
6818 15168 7.966812 ACCACATGATAGTATATGACACATGT 58.033 34.615 0.00 0.00 43.49 3.21
6821 15171 7.389232 ACATGATAGTATATGACACATGTGGG 58.611 38.462 28.64 6.20 42.36 4.61
6822 15172 6.358974 TGATAGTATATGACACATGTGGGG 57.641 41.667 28.64 5.42 34.19 4.96
6823 15173 5.843969 TGATAGTATATGACACATGTGGGGT 59.156 40.000 28.64 15.87 34.19 4.95
6824 15174 7.013834 TGATAGTATATGACACATGTGGGGTA 58.986 38.462 28.64 17.37 34.19 3.69
6825 15175 7.511028 TGATAGTATATGACACATGTGGGGTAA 59.489 37.037 28.64 11.12 34.19 2.85
6826 15176 5.925509 AGTATATGACACATGTGGGGTAAC 58.074 41.667 28.64 18.02 34.19 2.50
6827 15177 5.665812 AGTATATGACACATGTGGGGTAACT 59.334 40.000 28.64 19.71 34.19 2.24
6828 15178 6.842280 AGTATATGACACATGTGGGGTAACTA 59.158 38.462 28.64 10.89 34.19 2.24
6829 15179 3.688694 TGACACATGTGGGGTAACTAC 57.311 47.619 28.64 9.29 34.19 2.73
6830 15180 2.303600 TGACACATGTGGGGTAACTACC 59.696 50.000 28.64 0.00 45.71 3.18
6849 15199 4.313523 CCGGGTGGTAGGATGGAT 57.686 61.111 0.00 0.00 0.00 3.41
6850 15200 2.539983 CCGGGTGGTAGGATGGATT 58.460 57.895 0.00 0.00 0.00 3.01
6851 15201 0.843984 CCGGGTGGTAGGATGGATTT 59.156 55.000 0.00 0.00 0.00 2.17
6852 15202 1.214424 CCGGGTGGTAGGATGGATTTT 59.786 52.381 0.00 0.00 0.00 1.82
6853 15203 2.572290 CGGGTGGTAGGATGGATTTTC 58.428 52.381 0.00 0.00 0.00 2.29
6854 15204 2.748465 CGGGTGGTAGGATGGATTTTCC 60.748 54.545 0.00 0.00 36.96 3.13
6855 15205 2.424379 GGGTGGTAGGATGGATTTTCCC 60.424 54.545 0.00 0.00 35.03 3.97
6856 15206 2.514160 GGTGGTAGGATGGATTTTCCCT 59.486 50.000 0.00 0.00 35.03 4.20
6857 15207 3.720002 GGTGGTAGGATGGATTTTCCCTA 59.280 47.826 0.00 0.00 35.03 3.53
6858 15208 4.354087 GGTGGTAGGATGGATTTTCCCTAT 59.646 45.833 0.00 0.00 35.03 2.57
6859 15209 5.550403 GGTGGTAGGATGGATTTTCCCTATA 59.450 44.000 0.00 0.00 35.03 1.31
6860 15210 6.217693 GGTGGTAGGATGGATTTTCCCTATAT 59.782 42.308 0.00 0.00 35.03 0.86
6861 15211 7.404980 GGTGGTAGGATGGATTTTCCCTATATA 59.595 40.741 0.00 0.00 35.03 0.86
6862 15212 9.004231 GTGGTAGGATGGATTTTCCCTATATAT 57.996 37.037 0.00 0.00 35.03 0.86
7061 15413 1.463444 GCTGGTGTAAAACTGCCTACG 59.537 52.381 0.00 0.00 0.00 3.51
7707 18523 5.707066 AGAGCTGAAACCCATAAGATCTT 57.293 39.130 13.56 13.56 31.64 2.40
8176 19026 7.920151 AGTGAAGAAGACTATTCTGATTGATCG 59.080 37.037 0.00 0.00 29.98 3.69
8191 19041 9.029368 TCTGATTGATCGATTAGATATGGAAGT 57.971 33.333 12.34 0.00 40.26 3.01
8300 19150 2.275466 AGTAATAGGGTGCAGGGTTGT 58.725 47.619 0.00 0.00 0.00 3.32
8318 19172 4.504097 GGTTGTTGAAAGAACATGCTTGAC 59.496 41.667 6.60 0.54 34.18 3.18
8319 19173 3.951306 TGTTGAAAGAACATGCTTGACG 58.049 40.909 6.60 0.00 0.00 4.35
8325 19179 4.836125 AAGAACATGCTTGACGACATTT 57.164 36.364 6.60 0.00 0.00 2.32
8366 19220 1.042003 TGCAGAGTGGGCAAAGCAAA 61.042 50.000 0.00 0.00 38.54 3.68
8407 19264 4.322349 CCTTAAGACTGGTCTCAGAAGTGG 60.322 50.000 3.36 0.00 43.49 4.00
8425 19282 3.634448 AGTGGTGATAGAAGGTCTCATCG 59.366 47.826 0.00 0.00 0.00 3.84
8602 19465 8.274322 TCTGGTGGAAATGATAATCAACATAGT 58.726 33.333 0.00 0.00 0.00 2.12
8670 19533 2.015736 AGACCAAGAGTAGCATTGCG 57.984 50.000 2.38 0.00 0.00 4.85
8983 23256 3.173953 TGCCATTGGAGATTGGAAAGT 57.826 42.857 6.95 0.00 34.81 2.66
9061 23335 4.947388 GTGGCAACCAGGTATTATTCTTCA 59.053 41.667 0.00 0.00 32.34 3.02
9122 23396 8.952278 TCTCAGACTTCAGTTAATCTCTTACTC 58.048 37.037 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.070981 TCAGAAAACCATGGCCATACAAAAA 59.929 36.000 20.30 0.00 0.00 1.94
16 17 4.590647 TCAGAAAACCATGGCCATACAAAA 59.409 37.500 20.30 0.00 0.00 2.44
17 18 4.155709 TCAGAAAACCATGGCCATACAAA 58.844 39.130 20.30 0.00 0.00 2.83
18 19 3.772387 TCAGAAAACCATGGCCATACAA 58.228 40.909 20.30 0.00 0.00 2.41
19 20 3.448093 TCAGAAAACCATGGCCATACA 57.552 42.857 20.30 0.00 0.00 2.29
20 21 5.343307 AAATCAGAAAACCATGGCCATAC 57.657 39.130 20.30 6.05 0.00 2.39
21 22 6.213195 AGAAAAATCAGAAAACCATGGCCATA 59.787 34.615 20.30 0.00 0.00 2.74
22 23 4.914177 AAAATCAGAAAACCATGGCCAT 57.086 36.364 14.09 14.09 0.00 4.40
23 24 4.347583 AGAAAAATCAGAAAACCATGGCCA 59.652 37.500 13.04 8.56 0.00 5.36
24 25 4.898320 AGAAAAATCAGAAAACCATGGCC 58.102 39.130 13.04 0.00 0.00 5.36
25 26 6.924111 TCTAGAAAAATCAGAAAACCATGGC 58.076 36.000 13.04 0.00 0.00 4.40
26 27 7.031975 GCTCTAGAAAAATCAGAAAACCATGG 58.968 38.462 11.19 11.19 0.00 3.66
27 28 7.596494 TGCTCTAGAAAAATCAGAAAACCATG 58.404 34.615 0.00 0.00 0.00 3.66
28 29 7.765695 TGCTCTAGAAAAATCAGAAAACCAT 57.234 32.000 0.00 0.00 0.00 3.55
29 30 7.765695 ATGCTCTAGAAAAATCAGAAAACCA 57.234 32.000 0.00 0.00 0.00 3.67
30 31 9.481340 AAAATGCTCTAGAAAAATCAGAAAACC 57.519 29.630 0.00 0.00 0.00 3.27
59 60 9.202273 GCAAAAATACACATCTAAAAATCACCA 57.798 29.630 0.00 0.00 0.00 4.17
60 61 8.655970 GGCAAAAATACACATCTAAAAATCACC 58.344 33.333 0.00 0.00 0.00 4.02
61 62 9.202273 TGGCAAAAATACACATCTAAAAATCAC 57.798 29.630 0.00 0.00 0.00 3.06
62 63 9.941325 ATGGCAAAAATACACATCTAAAAATCA 57.059 25.926 0.00 0.00 0.00 2.57
71 72 5.329035 AGTCCATGGCAAAAATACACATC 57.671 39.130 6.96 0.00 0.00 3.06
111 112 2.644299 CTCCAGGCCCAATCACCATATA 59.356 50.000 0.00 0.00 0.00 0.86
139 141 8.655970 GGAATATTTTGTTGTACATGCCTTTTC 58.344 33.333 0.00 0.00 0.00 2.29
143 145 5.957774 AGGGAATATTTTGTTGTACATGCCT 59.042 36.000 0.00 0.00 0.00 4.75
160 162 6.134535 ACATAAAACACCTCACAGGGAATA 57.865 37.500 0.00 0.00 40.58 1.75
360 371 8.603898 TCCAACTAGTTTTCTCCATACATAGA 57.396 34.615 5.07 0.00 0.00 1.98
364 375 6.214615 TCCATCCAACTAGTTTTCTCCATACA 59.785 38.462 5.07 0.00 0.00 2.29
369 381 7.468141 AAAATCCATCCAACTAGTTTTCTCC 57.532 36.000 5.07 0.00 0.00 3.71
380 392 3.013921 TCACGCCTAAAATCCATCCAAC 58.986 45.455 0.00 0.00 0.00 3.77
540 553 6.128138 GTGCTCCACCCCTTATAAGAATAT 57.872 41.667 14.28 0.00 0.00 1.28
542 555 4.439253 GTGCTCCACCCCTTATAAGAAT 57.561 45.455 14.28 0.00 0.00 2.40
757 1619 2.576648 AGAGGGATCCAAAAGTGGTACC 59.423 50.000 15.23 4.43 46.11 3.34
819 1684 2.477176 CGGAGCGGAGGAGACAGAG 61.477 68.421 0.00 0.00 0.00 3.35
820 1685 2.438614 CGGAGCGGAGGAGACAGA 60.439 66.667 0.00 0.00 0.00 3.41
946 1811 3.905678 CAGCTACCTCTCCCGCCG 61.906 72.222 0.00 0.00 0.00 6.46
947 1812 4.228567 GCAGCTACCTCTCCCGCC 62.229 72.222 0.00 0.00 0.00 6.13
948 1813 4.577246 CGCAGCTACCTCTCCCGC 62.577 72.222 0.00 0.00 0.00 6.13
1170 2089 1.424638 AGTTGTACTGAGGCTGGTGT 58.575 50.000 0.00 0.00 0.00 4.16
1455 2533 4.718774 TCCTCAACCTTCTGCTTCTCATAT 59.281 41.667 0.00 0.00 0.00 1.78
1561 2639 2.033757 CTGAGGCTGTGGCTGCTT 59.966 61.111 0.00 0.00 38.98 3.91
1892 2988 4.142730 GCAGTTGCACCAAAATTCAAACAA 60.143 37.500 0.00 0.00 41.59 2.83
1927 3023 1.629043 TCCTAACGCCACTGACTTCT 58.371 50.000 0.00 0.00 0.00 2.85
2041 3139 8.224389 AGCACATACAAAAACAGCATATATGA 57.776 30.769 17.10 0.00 0.00 2.15
2131 3229 7.843490 TCATAACAAGAAATAGGTAGTGCAC 57.157 36.000 9.40 9.40 0.00 4.57
2225 3323 5.904362 AGGAAACTGTCAATTAATGGAGC 57.096 39.130 0.00 0.00 41.13 4.70
2250 3348 3.607422 TTCATGCAGACACACTTTTCG 57.393 42.857 0.00 0.00 0.00 3.46
2278 3440 9.182933 CAGTAGTTTAGTTCTAGACACAGAAAC 57.817 37.037 16.82 16.82 36.34 2.78
2279 3441 8.910944 ACAGTAGTTTAGTTCTAGACACAGAAA 58.089 33.333 0.00 0.00 36.34 2.52
2281 3443 9.736414 ATACAGTAGTTTAGTTCTAGACACAGA 57.264 33.333 0.00 0.00 0.00 3.41
2282 3444 9.776158 CATACAGTAGTTTAGTTCTAGACACAG 57.224 37.037 0.00 1.25 0.00 3.66
2283 3445 9.511272 TCATACAGTAGTTTAGTTCTAGACACA 57.489 33.333 0.00 0.00 0.00 3.72
2284 3446 9.771915 GTCATACAGTAGTTTAGTTCTAGACAC 57.228 37.037 0.00 0.00 0.00 3.67
2285 3447 8.954350 GGTCATACAGTAGTTTAGTTCTAGACA 58.046 37.037 0.00 0.00 0.00 3.41
2286 3448 8.404765 GGGTCATACAGTAGTTTAGTTCTAGAC 58.595 40.741 0.00 0.00 0.00 2.59
2287 3449 8.334734 AGGGTCATACAGTAGTTTAGTTCTAGA 58.665 37.037 0.00 0.00 0.00 2.43
2288 3450 8.407064 CAGGGTCATACAGTAGTTTAGTTCTAG 58.593 40.741 0.00 0.00 0.00 2.43
2289 3451 7.892241 ACAGGGTCATACAGTAGTTTAGTTCTA 59.108 37.037 0.00 0.00 0.00 2.10
2316 3482 8.181904 TGCATTAACAAGAGAAGAAGGAAAAT 57.818 30.769 0.00 0.00 0.00 1.82
2535 3706 6.263392 TCAGGTGAACGGAAAAATCACAAATA 59.737 34.615 7.36 0.00 44.05 1.40
2551 3723 7.492352 AACGCCTAAATAATATCAGGTGAAC 57.508 36.000 16.58 0.00 40.42 3.18
2655 3840 6.947464 ACTGACAGCAGGTATAAATACAAGT 58.053 36.000 1.25 0.00 46.60 3.16
2910 4138 2.222013 GGTCGAGGAAAGGGGTGGT 61.222 63.158 0.00 0.00 0.00 4.16
3225 4499 2.202797 CTCCGTCATCCAGCACCG 60.203 66.667 0.00 0.00 0.00 4.94
3226 4500 2.187946 CCTCCGTCATCCAGCACC 59.812 66.667 0.00 0.00 0.00 5.01
3250 4527 2.764637 AATCCCTGGCCGGAACACAC 62.765 60.000 15.09 0.00 34.93 3.82
3255 4532 2.674754 GACAATCCCTGGCCGGAA 59.325 61.111 15.09 0.08 34.93 4.30
3259 4539 3.969250 TTCGCGACAATCCCTGGCC 62.969 63.158 9.15 0.00 0.00 5.36
3269 4549 1.859383 TCACTGACAAATTCGCGACA 58.141 45.000 9.15 0.49 0.00 4.35
3271 4551 2.349438 GCTTTCACTGACAAATTCGCGA 60.349 45.455 3.71 3.71 0.00 5.87
3353 4634 1.406860 AAATTGCCCCACAACGCCTT 61.407 50.000 0.00 0.00 42.27 4.35
3395 4676 2.758434 GCCCGAACCTGGGGTTTA 59.242 61.111 3.36 0.00 46.95 2.01
3419 4701 1.372683 CCTCGCCATCATCCGGATT 59.627 57.895 16.19 0.00 32.57 3.01
3421 4703 2.028125 GAACCTCGCCATCATCCGGA 62.028 60.000 6.61 6.61 0.00 5.14
3474 4757 4.021925 GAGACCTGCGCCAACCCT 62.022 66.667 4.18 0.00 0.00 4.34
3504 4832 2.203280 CCACCTTGGTCACCGCAA 60.203 61.111 0.00 0.00 31.35 4.85
3639 4991 2.671070 CTTCTGCCGTCCCACCAT 59.329 61.111 0.00 0.00 0.00 3.55
3640 4992 3.636231 CCTTCTGCCGTCCCACCA 61.636 66.667 0.00 0.00 0.00 4.17
3641 4993 4.410400 CCCTTCTGCCGTCCCACC 62.410 72.222 0.00 0.00 0.00 4.61
3642 4994 3.607370 GACCCTTCTGCCGTCCCAC 62.607 68.421 0.00 0.00 0.00 4.61
3643 4995 3.319198 GACCCTTCTGCCGTCCCA 61.319 66.667 0.00 0.00 0.00 4.37
3644 4996 3.003763 AGACCCTTCTGCCGTCCC 61.004 66.667 0.00 0.00 0.00 4.46
3645 4997 2.266055 CAGACCCTTCTGCCGTCC 59.734 66.667 0.00 0.00 42.99 4.79
3694 5046 1.807573 GCCTTCTTCCGCAGTCTCG 60.808 63.158 0.00 0.00 0.00 4.04
3765 5120 2.613506 GCCTCACCAAACCGAACGG 61.614 63.158 11.83 11.83 42.03 4.44
3766 5121 2.613506 GGCCTCACCAAACCGAACG 61.614 63.158 0.00 0.00 38.86 3.95
3767 5122 3.351450 GGCCTCACCAAACCGAAC 58.649 61.111 0.00 0.00 38.86 3.95
3923 5310 0.795085 GCGATGCATACAGCCATCTC 59.205 55.000 0.00 0.00 44.83 2.75
3971 5362 6.494842 TCAACTGACATTTTTCTTCTTTCGG 58.505 36.000 0.00 0.00 0.00 4.30
4076 5467 1.735926 GCTAAAGGGGAGATAGGCCT 58.264 55.000 11.78 11.78 0.00 5.19
4158 5561 0.743097 GCATCTTTGCCATGGAGGTC 59.257 55.000 18.40 0.00 43.38 3.85
5161 9781 6.869913 CACAGAAAAATAATGTCATTGGCTGT 59.130 34.615 8.39 8.90 30.73 4.40
5327 9949 8.345565 ACACAGAATAAAGTGTCATCTGAAAAC 58.654 33.333 7.98 0.00 45.16 2.43
5512 10411 7.778470 TCAACAACAATAAATTTTGGACACC 57.222 32.000 0.00 0.00 0.00 4.16
5542 10442 7.676683 TGGCATATACTATAAGGGAAGATCC 57.323 40.000 0.00 0.00 35.23 3.36
5612 10525 3.718956 AGCTTATAGGACTCCAAGGCAAT 59.281 43.478 0.00 0.00 0.00 3.56
5649 10562 6.808829 ACAGAAAAGCAAATTTGAGATCACA 58.191 32.000 22.31 0.00 0.00 3.58
5683 10596 9.300681 ACCATAACAAATGGATCATTATACCTG 57.699 33.333 10.90 0.00 41.64 4.00
5765 10678 2.647529 TCACATTCATCGCGTACAGT 57.352 45.000 5.77 0.00 0.00 3.55
5969 14313 5.539582 TTTGTATTGGTACAGATGCGAAC 57.460 39.130 0.00 0.00 41.56 3.95
5970 14314 6.428465 TCTTTTTGTATTGGTACAGATGCGAA 59.572 34.615 0.00 0.00 41.56 4.70
6120 14467 8.412608 AGATGACGTTTGAGTCTAAATGTATG 57.587 34.615 10.79 0.00 39.26 2.39
6135 14482 6.715464 CGGCTGATTTTATAAGATGACGTTT 58.285 36.000 0.00 0.00 0.00 3.60
6418 14768 8.986477 ACCTGTGACATTTTAAATAAAGATGC 57.014 30.769 0.00 0.00 0.00 3.91
6474 14824 9.555727 GCTTGTAGGAAACATTTGTCCTATATA 57.444 33.333 1.00 0.00 45.89 0.86
6475 14825 8.052748 TGCTTGTAGGAAACATTTGTCCTATAT 58.947 33.333 1.00 0.00 45.89 0.86
6476 14826 7.398829 TGCTTGTAGGAAACATTTGTCCTATA 58.601 34.615 1.00 0.00 45.89 1.31
6478 14828 5.626142 TGCTTGTAGGAAACATTTGTCCTA 58.374 37.500 0.00 0.00 42.68 2.94
6480 14830 4.278419 ACTGCTTGTAGGAAACATTTGTCC 59.722 41.667 0.00 0.00 38.10 4.02
6481 14831 5.215160 CACTGCTTGTAGGAAACATTTGTC 58.785 41.667 0.00 0.00 38.10 3.18
6482 14832 4.037923 CCACTGCTTGTAGGAAACATTTGT 59.962 41.667 0.00 0.00 38.10 2.83
6483 14833 4.037923 ACCACTGCTTGTAGGAAACATTTG 59.962 41.667 0.00 0.00 38.10 2.32
6484 14834 4.215109 ACCACTGCTTGTAGGAAACATTT 58.785 39.130 0.00 0.00 38.10 2.32
6485 14835 3.832527 ACCACTGCTTGTAGGAAACATT 58.167 40.909 0.00 0.00 38.10 2.71
6486 14836 3.508845 ACCACTGCTTGTAGGAAACAT 57.491 42.857 0.00 0.00 38.10 2.71
6489 14839 4.699925 AACTACCACTGCTTGTAGGAAA 57.300 40.909 0.00 0.00 38.98 3.13
6490 14840 4.020839 GGTAACTACCACTGCTTGTAGGAA 60.021 45.833 0.80 0.00 45.73 3.36
6491 14841 3.512724 GGTAACTACCACTGCTTGTAGGA 59.487 47.826 0.80 0.00 45.73 2.94
6519 14869 7.192148 ACTACATACAACATACAAAACGCAA 57.808 32.000 0.00 0.00 0.00 4.85
6521 14871 8.814235 AGATACTACATACAACATACAAAACGC 58.186 33.333 0.00 0.00 0.00 4.84
6543 14893 9.882996 CGTACATACTCACGGTTTTTATAGATA 57.117 33.333 0.00 0.00 34.57 1.98
6544 14894 8.408601 ACGTACATACTCACGGTTTTTATAGAT 58.591 33.333 0.00 0.00 42.35 1.98
6545 14895 7.697710 CACGTACATACTCACGGTTTTTATAGA 59.302 37.037 0.00 0.00 42.35 1.98
6546 14896 7.485913 ACACGTACATACTCACGGTTTTTATAG 59.514 37.037 0.00 0.00 42.35 1.31
6547 14897 7.312154 ACACGTACATACTCACGGTTTTTATA 58.688 34.615 0.00 0.00 42.35 0.98
6548 14898 6.158598 ACACGTACATACTCACGGTTTTTAT 58.841 36.000 0.00 0.00 42.35 1.40
6549 14899 5.527951 ACACGTACATACTCACGGTTTTTA 58.472 37.500 0.00 0.00 42.35 1.52
6550 14900 4.370917 ACACGTACATACTCACGGTTTTT 58.629 39.130 0.00 0.00 42.35 1.94
6551 14901 3.981211 ACACGTACATACTCACGGTTTT 58.019 40.909 0.00 0.00 42.35 2.43
6552 14902 3.648339 ACACGTACATACTCACGGTTT 57.352 42.857 0.00 0.00 42.35 3.27
6553 14903 3.753272 ACTACACGTACATACTCACGGTT 59.247 43.478 0.00 0.00 42.35 4.44
6554 14904 3.338249 ACTACACGTACATACTCACGGT 58.662 45.455 0.00 0.00 42.35 4.83
6555 14905 5.007039 ACATACTACACGTACATACTCACGG 59.993 44.000 0.00 0.00 42.35 4.94
6556 14906 6.040962 ACATACTACACGTACATACTCACG 57.959 41.667 0.00 0.00 43.63 4.35
6557 14907 8.136057 ACTACATACTACACGTACATACTCAC 57.864 38.462 0.00 0.00 0.00 3.51
6558 14908 9.987272 ATACTACATACTACACGTACATACTCA 57.013 33.333 0.00 0.00 0.00 3.41
6577 14927 9.524496 ACTACCCAATCATCGTTATATACTACA 57.476 33.333 0.00 0.00 0.00 2.74
6624 14974 7.495934 GAGCATACTCAAAACATGGTACATACT 59.504 37.037 0.00 0.00 43.10 2.12
6625 14975 7.495934 AGAGCATACTCAAAACATGGTACATAC 59.504 37.037 0.00 0.00 45.13 2.39
6626 14976 7.564793 AGAGCATACTCAAAACATGGTACATA 58.435 34.615 0.00 0.00 45.13 2.29
6627 14977 6.418101 AGAGCATACTCAAAACATGGTACAT 58.582 36.000 0.00 0.00 45.13 2.29
6628 14978 5.804639 AGAGCATACTCAAAACATGGTACA 58.195 37.500 0.00 0.00 46.09 2.90
6629 14979 8.438676 AATAGAGCATACTCAAAACATGGTAC 57.561 34.615 0.00 0.00 46.09 3.34
6630 14980 9.461312 AAAATAGAGCATACTCAAAACATGGTA 57.539 29.630 0.00 0.00 46.09 3.25
6631 14981 7.944729 AAATAGAGCATACTCAAAACATGGT 57.055 32.000 0.00 0.00 46.09 3.55
6632 14982 9.722056 GTAAAATAGAGCATACTCAAAACATGG 57.278 33.333 0.00 0.00 46.09 3.66
6633 14983 9.425893 CGTAAAATAGAGCATACTCAAAACATG 57.574 33.333 0.00 0.00 46.09 3.21
6634 14984 9.162764 ACGTAAAATAGAGCATACTCAAAACAT 57.837 29.630 0.00 0.00 46.09 2.71
6635 14985 8.542497 ACGTAAAATAGAGCATACTCAAAACA 57.458 30.769 0.00 0.00 46.09 2.83
6636 14986 9.897349 GTACGTAAAATAGAGCATACTCAAAAC 57.103 33.333 0.00 0.00 46.09 2.43
6637 14987 9.642327 TGTACGTAAAATAGAGCATACTCAAAA 57.358 29.630 0.00 0.00 46.09 2.44
6638 14988 9.642327 TTGTACGTAAAATAGAGCATACTCAAA 57.358 29.630 0.00 0.00 46.09 2.69
6639 14989 9.642327 TTTGTACGTAAAATAGAGCATACTCAA 57.358 29.630 0.00 0.00 46.09 3.02
6640 14990 9.811995 ATTTGTACGTAAAATAGAGCATACTCA 57.188 29.630 0.00 0.00 46.09 3.41
6685 15035 8.792633 GCATATGAGCCCATAGTTTTTGTTATA 58.207 33.333 6.97 0.00 38.53 0.98
6686 15036 7.287466 TGCATATGAGCCCATAGTTTTTGTTAT 59.713 33.333 6.97 0.00 38.53 1.89
6687 15037 6.605194 TGCATATGAGCCCATAGTTTTTGTTA 59.395 34.615 6.97 0.00 38.53 2.41
6688 15038 5.421693 TGCATATGAGCCCATAGTTTTTGTT 59.578 36.000 6.97 0.00 38.53 2.83
6689 15039 4.955450 TGCATATGAGCCCATAGTTTTTGT 59.045 37.500 6.97 0.00 38.53 2.83
6690 15040 5.518848 TGCATATGAGCCCATAGTTTTTG 57.481 39.130 6.97 0.00 38.53 2.44
6691 15041 6.543430 TTTGCATATGAGCCCATAGTTTTT 57.457 33.333 6.97 0.00 38.53 1.94
6692 15042 6.736110 ATTTGCATATGAGCCCATAGTTTT 57.264 33.333 6.97 0.00 38.53 2.43
6693 15043 6.736110 AATTTGCATATGAGCCCATAGTTT 57.264 33.333 6.97 0.00 38.53 2.66
6694 15044 6.736110 AAATTTGCATATGAGCCCATAGTT 57.264 33.333 6.97 0.00 38.53 2.24
6695 15045 6.736110 AAAATTTGCATATGAGCCCATAGT 57.264 33.333 6.97 0.00 38.53 2.12
6696 15046 7.211573 TGAAAAATTTGCATATGAGCCCATAG 58.788 34.615 6.97 0.00 38.53 2.23
6697 15047 7.122138 TGAAAAATTTGCATATGAGCCCATA 57.878 32.000 6.97 0.00 39.38 2.74
6698 15048 5.991861 TGAAAAATTTGCATATGAGCCCAT 58.008 33.333 6.97 0.00 36.81 4.00
6699 15049 5.417754 TGAAAAATTTGCATATGAGCCCA 57.582 34.783 6.97 0.00 0.00 5.36
6700 15050 9.709495 TTATATGAAAAATTTGCATATGAGCCC 57.291 29.630 23.08 0.00 36.29 5.19
6789 15139 9.802039 TGTGTCATATACTATCATGTGGTACTA 57.198 33.333 0.00 0.00 0.00 1.82
6790 15140 8.706322 TGTGTCATATACTATCATGTGGTACT 57.294 34.615 0.00 0.00 0.00 2.73
6791 15141 9.358872 CATGTGTCATATACTATCATGTGGTAC 57.641 37.037 0.00 0.00 32.85 3.34
6792 15142 9.088987 ACATGTGTCATATACTATCATGTGGTA 57.911 33.333 0.00 0.00 40.41 3.25
6793 15143 7.874528 CACATGTGTCATATACTATCATGTGGT 59.125 37.037 18.03 0.00 45.59 4.16
6794 15144 8.248117 CACATGTGTCATATACTATCATGTGG 57.752 38.462 18.03 8.16 45.59 4.17
6795 15145 7.332678 CCCACATGTGTCATATACTATCATGTG 59.667 40.741 23.79 20.93 46.80 3.21
6796 15146 7.389232 CCCACATGTGTCATATACTATCATGT 58.611 38.462 23.79 0.00 41.41 3.21
6797 15147 6.820152 CCCCACATGTGTCATATACTATCATG 59.180 42.308 23.79 3.16 37.83 3.07
6798 15148 6.501805 ACCCCACATGTGTCATATACTATCAT 59.498 38.462 23.79 0.00 0.00 2.45
6799 15149 5.843969 ACCCCACATGTGTCATATACTATCA 59.156 40.000 23.79 0.00 0.00 2.15
6800 15150 6.360370 ACCCCACATGTGTCATATACTATC 57.640 41.667 23.79 0.00 0.00 2.08
6801 15151 7.512746 AGTTACCCCACATGTGTCATATACTAT 59.487 37.037 23.79 0.00 0.00 2.12
6802 15152 6.842280 AGTTACCCCACATGTGTCATATACTA 59.158 38.462 23.79 0.13 0.00 1.82
6803 15153 5.665812 AGTTACCCCACATGTGTCATATACT 59.334 40.000 23.79 15.56 0.00 2.12
6804 15154 5.925509 AGTTACCCCACATGTGTCATATAC 58.074 41.667 23.79 13.79 0.00 1.47
6805 15155 6.042322 GGTAGTTACCCCACATGTGTCATATA 59.958 42.308 23.79 6.75 40.53 0.86
6806 15156 5.163237 GGTAGTTACCCCACATGTGTCATAT 60.163 44.000 23.79 7.67 40.53 1.78
6807 15157 4.162698 GGTAGTTACCCCACATGTGTCATA 59.837 45.833 23.79 10.09 40.53 2.15
6808 15158 3.054655 GGTAGTTACCCCACATGTGTCAT 60.055 47.826 23.79 11.05 40.53 3.06
6809 15159 2.303600 GGTAGTTACCCCACATGTGTCA 59.696 50.000 23.79 3.65 40.53 3.58
6810 15160 2.303600 TGGTAGTTACCCCACATGTGTC 59.696 50.000 23.79 7.49 45.87 3.67
6811 15161 2.340731 TGGTAGTTACCCCACATGTGT 58.659 47.619 23.79 8.80 45.87 3.72
6818 15168 1.613035 CCCGGTGGTAGTTACCCCA 60.613 63.158 0.00 0.00 45.87 4.96
6819 15169 1.613332 ACCCGGTGGTAGTTACCCC 60.613 63.158 0.00 5.97 45.45 4.95
6820 15170 1.598517 CACCCGGTGGTAGTTACCC 59.401 63.158 9.99 0.00 45.57 3.69
6832 15182 0.843984 AAATCCATCCTACCACCCGG 59.156 55.000 0.00 0.00 38.77 5.73
6833 15183 2.572290 GAAAATCCATCCTACCACCCG 58.428 52.381 0.00 0.00 0.00 5.28
6834 15184 2.424379 GGGAAAATCCATCCTACCACCC 60.424 54.545 0.00 0.00 38.64 4.61
6835 15185 2.514160 AGGGAAAATCCATCCTACCACC 59.486 50.000 0.00 0.00 38.64 4.61
6836 15186 3.953542 AGGGAAAATCCATCCTACCAC 57.046 47.619 0.00 0.00 38.64 4.16
7061 15413 6.721321 TGAATCACGAAACAAGAAAAGGTAC 58.279 36.000 0.00 0.00 0.00 3.34
7516 18321 5.961398 TTGGATCGGAGGGAGTATTAAAA 57.039 39.130 0.00 0.00 0.00 1.52
7634 18450 6.220726 AGGCTTTGTTGTTCTTGTTATTGT 57.779 33.333 0.00 0.00 0.00 2.71
7638 18454 7.399245 ACTAAAGGCTTTGTTGTTCTTGTTA 57.601 32.000 22.32 0.00 0.00 2.41
7642 18458 4.341235 GGGACTAAAGGCTTTGTTGTTCTT 59.659 41.667 22.32 0.00 0.00 2.52
7643 18459 3.889538 GGGACTAAAGGCTTTGTTGTTCT 59.110 43.478 22.32 0.00 0.00 3.01
7644 18460 3.634910 TGGGACTAAAGGCTTTGTTGTTC 59.365 43.478 22.32 15.31 0.00 3.18
7680 18496 0.548510 ATGGGTTTCAGCTCTAGCCC 59.451 55.000 9.02 9.02 43.38 5.19
7707 18523 0.184692 TCCATGTGGAGTTGGTTGCA 59.815 50.000 0.00 0.00 39.78 4.08
8191 19041 4.033932 CGATGGTGCAAGAAAATGACGATA 59.966 41.667 0.00 0.00 0.00 2.92
8300 19150 3.625313 TGTCGTCAAGCATGTTCTTTCAA 59.375 39.130 0.00 0.00 0.00 2.69
8318 19172 2.016318 TCTGCTATTGCCCAAATGTCG 58.984 47.619 0.00 0.00 38.71 4.35
8319 19173 4.660789 AATCTGCTATTGCCCAAATGTC 57.339 40.909 0.00 0.00 38.71 3.06
8325 19179 4.082081 CACTTCAAAATCTGCTATTGCCCA 60.082 41.667 0.00 0.00 38.71 5.36
8366 19220 0.977395 GGTCCAGTTACACTCTGCCT 59.023 55.000 0.00 0.00 0.00 4.75
8407 19264 4.902443 TGACGATGAGACCTTCTATCAC 57.098 45.455 0.00 0.00 0.00 3.06
8548 19409 2.574322 CAGTTACGATTGCACAACTGC 58.426 47.619 8.82 0.00 40.82 4.40
8558 19419 6.238648 CCACCAGAAAAGAAACAGTTACGATT 60.239 38.462 0.00 0.00 0.00 3.34
8602 19465 4.941263 GGTAGCACAAATACATGACCTTCA 59.059 41.667 0.00 0.00 0.00 3.02
8720 22888 7.044798 CCCAAAACAAGTTTTTCTATGGACAA 58.955 34.615 8.12 0.00 40.45 3.18
8785 22959 8.700051 CCTCTCAAGTTAGAGAAGGAATCATTA 58.300 37.037 2.47 0.00 44.93 1.90
8833 23007 7.458397 TGGAACAATACAAGAAATACCACTCT 58.542 34.615 0.00 0.00 31.92 3.24
9061 23335 9.672673 AAAGCTATTTGACAGTACTACATGATT 57.327 29.630 0.00 0.00 0.00 2.57
9100 23374 9.303116 TGAAGAGTAAGAGATTAACTGAAGTCT 57.697 33.333 0.00 0.00 0.00 3.24
9122 23396 7.493645 GGCTTAAAATCCATTGAATTCCTGAAG 59.506 37.037 2.27 1.46 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.