Multiple sequence alignment - TraesCS7D01G026000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G026000 chr7D 100.000 6255 0 0 1 6255 12456291 12462545 0.000000e+00 11551.0
1 TraesCS7D01G026000 chr7A 87.996 3374 231 83 1 3313 12095010 12098270 0.000000e+00 3827.0
2 TraesCS7D01G026000 chr7A 90.409 2200 125 42 3434 5566 12098268 12100448 0.000000e+00 2815.0
3 TraesCS7D01G026000 chr7A 85.486 689 75 12 5556 6241 12100340 12101006 0.000000e+00 695.0
4 TraesCS7D01G026000 chr7A 85.507 207 22 6 2483 2682 12119648 12119853 6.350000e-50 209.0
5 TraesCS7D01G026000 chr4A 90.904 1770 90 37 3434 5150 725671274 725669523 0.000000e+00 2311.0
6 TraesCS7D01G026000 chr4A 82.701 1555 123 59 908 2427 725673606 725672163 0.000000e+00 1247.0
7 TraesCS7D01G026000 chr4A 85.290 707 73 19 5556 6255 725669177 725668495 0.000000e+00 701.0
8 TraesCS7D01G026000 chr4A 86.388 551 46 20 2732 3267 725671819 725671283 5.440000e-160 575.0
9 TraesCS7D01G026000 chr4A 87.668 446 39 8 5131 5566 725669507 725669068 7.240000e-139 505.0
10 TraesCS7D01G026000 chr4A 90.116 172 16 1 2537 2707 725671986 725671815 8.160000e-54 222.0
11 TraesCS7D01G026000 chr3B 74.890 227 52 5 217 441 826393259 826393482 1.440000e-16 99.0
12 TraesCS7D01G026000 chr3B 93.478 46 3 0 1820 1865 45791386 45791341 1.130000e-07 69.4
13 TraesCS7D01G026000 chr3B 93.478 46 3 0 1820 1865 45874600 45874555 1.130000e-07 69.4
14 TraesCS7D01G026000 chr3B 93.478 46 3 0 1820 1865 45888683 45888638 1.130000e-07 69.4
15 TraesCS7D01G026000 chr3B 93.478 46 3 0 1820 1865 45954864 45954819 1.130000e-07 69.4
16 TraesCS7D01G026000 chr3B 89.796 49 5 0 1820 1868 45837281 45837233 5.230000e-06 63.9
17 TraesCS7D01G026000 chr3B 89.796 49 5 0 1820 1868 45932327 45932279 5.230000e-06 63.9
18 TraesCS7D01G026000 chr2A 93.617 47 2 1 1819 1865 456493135 456493090 1.130000e-07 69.4
19 TraesCS7D01G026000 chr5D 89.796 49 5 0 1820 1868 192265971 192265923 5.230000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G026000 chr7D 12456291 12462545 6254 False 11551.000000 11551 100.000000 1 6255 1 chr7D.!!$F1 6254
1 TraesCS7D01G026000 chr7A 12095010 12101006 5996 False 2445.666667 3827 87.963667 1 6241 3 chr7A.!!$F2 6240
2 TraesCS7D01G026000 chr4A 725668495 725673606 5111 True 926.833333 2311 87.177833 908 6255 6 chr4A.!!$R1 5347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 946 0.391661 CTAGCAAAGCTCTCGGCCAA 60.392 55.000 2.24 0.00 43.05 4.52 F
1753 1805 0.114168 AACTACTTTGGGGGCATGCA 59.886 50.000 21.36 0.00 0.00 3.96 F
1756 1808 0.334335 TACTTTGGGGGCATGCATGA 59.666 50.000 30.64 5.84 0.00 3.07 F
3271 3476 0.257039 AATCCATGGCAGGACTGGAC 59.743 55.000 6.96 0.00 41.65 4.02 F
3273 3478 1.077930 CCATGGCAGGACTGGACTG 60.078 63.158 0.00 0.00 38.95 3.51 F
4323 4560 0.321021 AGGCGATCATGAGGAGCATC 59.679 55.000 17.67 2.61 34.15 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 1948 0.108585 AACACGGCCTGAACTGATGT 59.891 50.000 0.00 0.0 0.00 3.06 R
3012 3206 1.349026 TGGCCTGCTCTATGGAATAGC 59.651 52.381 3.32 0.0 46.55 2.97 R
3426 3631 3.118371 TGCAGATTCAGCATCATCACTCT 60.118 43.478 0.00 0.0 37.02 3.24 R
4097 4311 0.389296 CGGCGTTCAGGTACATGACA 60.389 55.000 10.23 0.0 0.00 3.58 R
5100 5396 1.095228 CAGTCACCGTTGGTTGCAGT 61.095 55.000 0.00 0.0 31.02 4.40 R
5480 5811 0.025001 CGATGCAAGTTACTTCGGCG 59.975 55.000 0.00 0.0 32.76 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.109393 CGGATGATTCTCTTCAGGTTTTATTTA 57.891 33.333 0.00 0.00 0.00 1.40
81 82 3.388345 AGGAGTCTTCGAGTTTGGTTC 57.612 47.619 0.00 0.00 0.00 3.62
84 85 1.684983 AGTCTTCGAGTTTGGTTCGGA 59.315 47.619 0.00 0.00 38.54 4.55
108 109 1.212751 GAGGCGGCAATGTTGTTCC 59.787 57.895 13.08 0.00 0.00 3.62
110 111 1.112315 AGGCGGCAATGTTGTTCCAA 61.112 50.000 13.08 0.00 0.00 3.53
141 142 0.763223 TATTCTCCCCGCTCCTTCCC 60.763 60.000 0.00 0.00 0.00 3.97
164 166 3.135994 GTTCCGTTGGTGTGTTATCACT 58.864 45.455 5.57 0.00 44.14 3.41
178 180 1.614241 ATCACTGGCGGAGGGTGTAC 61.614 60.000 0.00 0.00 33.30 2.90
181 183 2.527123 TGGCGGAGGGTGTACCAA 60.527 61.111 3.11 0.00 43.89 3.67
184 186 2.125673 CGGAGGGTGTACCAAGCG 60.126 66.667 3.11 0.00 43.89 4.68
201 204 2.580601 CGGGTCTTCCAAGTCCGGT 61.581 63.158 0.00 0.00 38.87 5.28
207 210 0.949105 CTTCCAAGTCCGGTCGGTTG 60.949 60.000 9.36 7.42 36.47 3.77
254 257 4.098914 TCAACTGGCTATTGTGGTCTTT 57.901 40.909 2.05 0.00 0.00 2.52
267 270 5.304686 TGTGGTCTTTGGAGTTTCTACAT 57.695 39.130 0.00 0.00 0.00 2.29
268 271 5.305585 TGTGGTCTTTGGAGTTTCTACATC 58.694 41.667 0.00 0.00 0.00 3.06
273 276 5.412904 GTCTTTGGAGTTTCTACATCCCTTG 59.587 44.000 0.00 0.00 31.73 3.61
274 277 4.993705 TTGGAGTTTCTACATCCCTTGT 57.006 40.909 0.00 0.00 42.62 3.16
275 278 4.553330 TGGAGTTTCTACATCCCTTGTC 57.447 45.455 0.00 0.00 39.87 3.18
276 279 3.056107 TGGAGTTTCTACATCCCTTGTCG 60.056 47.826 0.00 0.00 39.87 4.35
277 280 3.522553 GAGTTTCTACATCCCTTGTCGG 58.477 50.000 0.00 0.00 39.87 4.79
278 281 2.007608 GTTTCTACATCCCTTGTCGGC 58.992 52.381 0.00 0.00 39.87 5.54
279 282 1.271856 TTCTACATCCCTTGTCGGCA 58.728 50.000 0.00 0.00 39.87 5.69
283 289 1.923356 ACATCCCTTGTCGGCATTTT 58.077 45.000 0.00 0.00 30.89 1.82
291 297 3.120060 CCTTGTCGGCATTTTCTTCTCTG 60.120 47.826 0.00 0.00 0.00 3.35
297 303 1.098050 CATTTTCTTCTCTGGGGCGG 58.902 55.000 0.00 0.00 0.00 6.13
299 305 3.605749 TTTCTTCTCTGGGGCGGCG 62.606 63.158 0.51 0.51 0.00 6.46
301 307 4.521062 CTTCTCTGGGGCGGCGAG 62.521 72.222 12.98 4.32 0.00 5.03
304 310 3.458163 CTCTGGGGCGGCGAGTTA 61.458 66.667 12.98 0.00 0.00 2.24
321 327 2.806244 AGTTACTTCGCAAATCGCAGTT 59.194 40.909 0.00 0.00 41.70 3.16
322 328 2.873170 TACTTCGCAAATCGCAGTTG 57.127 45.000 0.00 0.00 41.70 3.16
323 329 0.944386 ACTTCGCAAATCGCAGTTGT 59.056 45.000 0.00 0.00 41.70 3.32
330 336 2.602217 GCAAATCGCAGTTGTCGACTTT 60.602 45.455 17.92 3.22 41.79 2.66
344 350 2.154462 CGACTTTTCCTGGTCTGCATT 58.846 47.619 0.00 0.00 0.00 3.56
356 362 3.189080 TGGTCTGCATTGATGACTTTTCG 59.811 43.478 3.40 0.00 0.00 3.46
360 366 3.145286 TGCATTGATGACTTTTCGGACA 58.855 40.909 0.00 0.00 0.00 4.02
363 369 4.391830 GCATTGATGACTTTTCGGACACTA 59.608 41.667 0.00 0.00 0.00 2.74
366 372 5.209818 TGATGACTTTTCGGACACTACTT 57.790 39.130 0.00 0.00 0.00 2.24
370 376 5.766222 TGACTTTTCGGACACTACTTCTAC 58.234 41.667 0.00 0.00 0.00 2.59
376 382 3.825014 TCGGACACTACTTCTACAAGCTT 59.175 43.478 0.00 0.00 32.09 3.74
377 383 4.082895 TCGGACACTACTTCTACAAGCTTC 60.083 45.833 0.00 0.00 32.09 3.86
379 385 5.404096 GGACACTACTTCTACAAGCTTCTC 58.596 45.833 0.00 0.00 32.09 2.87
382 388 4.080687 ACTACTTCTACAAGCTTCTCGGT 58.919 43.478 0.00 0.00 32.09 4.69
398 405 6.445357 TTCTCGGTTTAAAAAGTTTGCTCT 57.555 33.333 0.00 0.00 0.00 4.09
401 408 3.489416 CGGTTTAAAAAGTTTGCTCTGCC 59.511 43.478 0.00 0.00 0.00 4.85
416 423 2.440599 GCCAAGGAAGAGGCCCAA 59.559 61.111 0.00 0.00 45.18 4.12
418 425 0.831711 GCCAAGGAAGAGGCCCAAAA 60.832 55.000 0.00 0.00 45.18 2.44
430 437 1.966762 CCCAAAAGCGGCATTGAGT 59.033 52.632 16.89 0.00 0.00 3.41
432 439 1.543802 CCCAAAAGCGGCATTGAGTTA 59.456 47.619 16.89 0.00 0.00 2.24
433 440 2.166254 CCCAAAAGCGGCATTGAGTTAT 59.834 45.455 16.89 0.00 0.00 1.89
465 472 2.513666 GCCGGTGGATCGATGCAA 60.514 61.111 21.89 3.03 0.00 4.08
474 481 4.433615 GTGGATCGATGCAAGAGTAAGAA 58.566 43.478 21.89 0.00 0.00 2.52
481 488 4.264145 CGATGCAAGAGTAAGAAGACTTCG 59.736 45.833 9.53 0.00 37.53 3.79
487 494 1.275573 AGTAAGAAGACTTCGGCACCC 59.724 52.381 9.53 0.00 37.53 4.61
535 542 7.887996 TTTCTGTATTGATGGAAATGTTTGC 57.112 32.000 0.00 0.00 0.00 3.68
560 575 7.466725 GCAAGGACACGTGATGCTTTATAAATA 60.467 37.037 25.01 0.00 34.29 1.40
606 621 3.057596 TGAAACAAAGATTTAGCAGGGCG 60.058 43.478 0.00 0.00 0.00 6.13
621 636 1.566231 AGGGCGAAGAAAATCAGGGAT 59.434 47.619 0.00 0.00 0.00 3.85
622 637 2.777692 AGGGCGAAGAAAATCAGGGATA 59.222 45.455 0.00 0.00 0.00 2.59
627 642 6.072452 GGGCGAAGAAAATCAGGGATATTTAG 60.072 42.308 0.00 0.00 0.00 1.85
648 663 5.653255 AGTGGCAGGAGGAAATACATTAT 57.347 39.130 0.00 0.00 0.00 1.28
656 671 9.372369 GCAGGAGGAAATACATTATATCTGTAC 57.628 37.037 1.32 0.00 32.24 2.90
716 732 6.694445 ATTACTCTGGAATGGATAAGAGGG 57.306 41.667 3.80 0.00 40.41 4.30
719 735 4.902448 ACTCTGGAATGGATAAGAGGGTAC 59.098 45.833 3.80 0.00 40.41 3.34
773 790 0.801251 GACAGCAAAGAGAAGCGCAT 59.199 50.000 11.47 0.00 35.48 4.73
780 797 3.120782 GCAAAGAGAAGCGCATGAAAAAG 59.879 43.478 11.47 0.00 0.00 2.27
811 828 4.705337 TGGATTATTTTAACCACGTGCC 57.295 40.909 10.91 1.51 0.00 5.01
815 832 1.989706 ATTTTAACCACGTGCCCACT 58.010 45.000 10.91 0.00 0.00 4.00
821 838 2.880879 CACGTGCCCACTCGATCG 60.881 66.667 9.36 9.36 36.64 3.69
829 846 4.498520 CACTCGATCGGCGCTGGT 62.499 66.667 17.88 9.88 40.61 4.00
830 847 2.827190 ACTCGATCGGCGCTGGTA 60.827 61.111 17.88 0.00 40.61 3.25
831 848 2.194212 ACTCGATCGGCGCTGGTAT 61.194 57.895 17.88 2.68 40.61 2.73
832 849 0.887836 ACTCGATCGGCGCTGGTATA 60.888 55.000 17.88 0.00 40.61 1.47
833 850 0.452184 CTCGATCGGCGCTGGTATAT 59.548 55.000 17.88 1.37 40.61 0.86
834 851 1.669265 CTCGATCGGCGCTGGTATATA 59.331 52.381 17.88 0.00 40.61 0.86
835 852 2.290916 CTCGATCGGCGCTGGTATATAT 59.709 50.000 17.88 0.07 40.61 0.86
836 853 2.289820 TCGATCGGCGCTGGTATATATC 59.710 50.000 17.88 9.73 40.61 1.63
837 854 2.651701 GATCGGCGCTGGTATATATCG 58.348 52.381 17.88 2.34 0.00 2.92
859 876 1.758280 CCGGCCGCCTATATATACCAA 59.242 52.381 22.85 0.00 0.00 3.67
866 883 4.352039 CGCCTATATATACCAAGCGTCAG 58.648 47.826 11.02 0.00 37.47 3.51
887 904 0.666274 CCTCGCAGCGTCAGTACAAA 60.666 55.000 15.93 0.00 0.00 2.83
888 905 0.710567 CTCGCAGCGTCAGTACAAAG 59.289 55.000 15.93 0.00 0.00 2.77
891 908 0.790814 GCAGCGTCAGTACAAAGACC 59.209 55.000 0.00 0.00 0.00 3.85
895 912 1.525619 GCGTCAGTACAAAGACCACAC 59.474 52.381 0.00 0.00 0.00 3.82
906 923 3.701604 GACCACACGAGGCGCTAGG 62.702 68.421 7.64 0.00 0.00 3.02
927 944 4.116878 CTAGCAAAGCTCTCGGCC 57.883 61.111 0.00 0.00 43.05 6.13
929 946 0.391661 CTAGCAAAGCTCTCGGCCAA 60.392 55.000 2.24 0.00 43.05 4.52
951 968 2.697425 GCATCACGCGTGCTGTAG 59.303 61.111 34.94 22.48 39.45 2.74
1186 1203 2.679716 GCATGTGGGCCTTCCTCT 59.320 61.111 4.53 0.00 36.20 3.69
1271 1288 3.574396 CACTCCCTTTTCCTTTCCTTTCC 59.426 47.826 0.00 0.00 0.00 3.13
1313 1331 1.316266 CTCCCTCACTCTCCCCCAT 59.684 63.158 0.00 0.00 0.00 4.00
1367 1385 1.979155 GTCTTTGGGCCTGGGCTTC 60.979 63.158 20.47 4.84 41.60 3.86
1393 1411 2.900273 CTCGGCCGAGGATTCCAA 59.100 61.111 41.47 12.32 38.51 3.53
1394 1412 1.227380 CTCGGCCGAGGATTCCAAG 60.227 63.158 41.47 18.39 38.51 3.61
1395 1413 2.897350 CGGCCGAGGATTCCAAGC 60.897 66.667 24.07 4.36 0.00 4.01
1396 1414 2.592308 GGCCGAGGATTCCAAGCT 59.408 61.111 5.29 0.00 0.00 3.74
1397 1415 1.821332 GGCCGAGGATTCCAAGCTG 60.821 63.158 5.29 0.00 0.00 4.24
1424 1442 4.111016 CACCGTAGACCGCGCTGA 62.111 66.667 5.61 0.00 34.38 4.26
1494 1528 2.708216 TGACTGGTGTCTTCTTGCAA 57.292 45.000 0.00 0.00 43.29 4.08
1502 1536 3.499048 GTGTCTTCTTGCAATGCATCAG 58.501 45.455 9.39 4.44 38.76 2.90
1540 1574 5.083821 GCAAGATACCCTCTCCTAGATTCT 58.916 45.833 0.00 0.00 31.03 2.40
1644 1696 1.209504 TGGTCCTGGAAAGATAAGCCG 59.790 52.381 0.00 0.00 0.00 5.52
1705 1757 3.328505 CAAAAATGCGCTTTGGAGGATT 58.671 40.909 9.73 0.00 35.21 3.01
1719 1771 4.026744 TGGAGGATTTGTTGTTGGTGAAA 58.973 39.130 0.00 0.00 0.00 2.69
1738 1790 6.115446 GTGAAAGGATGGATCACATGAACTA 58.885 40.000 0.00 0.00 42.31 2.24
1752 1804 0.817654 GAACTACTTTGGGGGCATGC 59.182 55.000 9.90 9.90 0.00 4.06
1753 1805 0.114168 AACTACTTTGGGGGCATGCA 59.886 50.000 21.36 0.00 0.00 3.96
1754 1806 0.336048 ACTACTTTGGGGGCATGCAT 59.664 50.000 21.36 0.00 0.00 3.96
1755 1807 0.748450 CTACTTTGGGGGCATGCATG 59.252 55.000 22.70 22.70 0.00 4.06
1756 1808 0.334335 TACTTTGGGGGCATGCATGA 59.666 50.000 30.64 5.84 0.00 3.07
1757 1809 1.259840 ACTTTGGGGGCATGCATGAC 61.260 55.000 30.64 28.00 34.16 3.06
1773 1825 4.314440 ACCGCCGCACACATCACT 62.314 61.111 0.00 0.00 0.00 3.41
1795 1847 0.449388 GATGCTCCTCCTTTTGTGCG 59.551 55.000 0.00 0.00 0.00 5.34
1803 1855 2.605338 CCTCCTTTTGTGCGTGTTCATG 60.605 50.000 0.00 0.00 0.00 3.07
1813 1865 2.551887 TGCGTGTTCATGCATACAAACT 59.448 40.909 14.54 0.00 35.90 2.66
1815 1867 3.361644 GCGTGTTCATGCATACAAACTTG 59.638 43.478 11.47 10.80 0.00 3.16
1865 1917 8.958119 AAGATGTTATTACGACCAATATGTGT 57.042 30.769 0.00 0.00 0.00 3.72
1868 1920 7.297229 TGTTATTACGACCAATATGTGTGTG 57.703 36.000 0.00 0.00 0.00 3.82
1940 1996 1.970917 GCAGTGGCAAAGATCCGTCG 61.971 60.000 0.00 0.00 40.72 5.12
1959 2026 5.215160 CGTCGTCATCATCAACATCTATCA 58.785 41.667 0.00 0.00 0.00 2.15
1962 2029 5.302823 TCGTCATCATCAACATCTATCACCT 59.697 40.000 0.00 0.00 0.00 4.00
2035 2105 1.942657 CCCATACCATCTGCTTGTTCG 59.057 52.381 0.00 0.00 0.00 3.95
2104 2174 9.288576 TGTTCTGAATTCTGATGTATCTGTTTT 57.711 29.630 14.89 0.00 0.00 2.43
2187 2257 2.757314 ACGATGCTCTTCAGAGATGACA 59.243 45.455 8.09 0.00 44.74 3.58
2194 2264 4.382901 GCTCTTCAGAGATGACAATCACCT 60.383 45.833 8.09 0.00 44.74 4.00
2240 2310 3.322191 AACCCCCTTTCAGTTTGCTTA 57.678 42.857 0.00 0.00 0.00 3.09
2262 2339 7.519008 GCTTAGATGTTGCAATGTACTATGGTC 60.519 40.741 0.59 0.00 0.00 4.02
2268 2345 5.172687 TGCAATGTACTATGGTCCAGAAA 57.827 39.130 0.00 0.00 0.00 2.52
2287 2365 6.128117 CCAGAAATGCAAATGAAGGATTTTGG 60.128 38.462 0.00 0.00 37.19 3.28
2308 2386 2.343544 GCTGCAATTGCTGTCGATTTTC 59.656 45.455 30.32 13.27 42.66 2.29
2309 2387 2.583739 TGCAATTGCTGTCGATTTTCG 58.416 42.857 29.37 0.00 42.66 3.46
2311 2389 3.233578 GCAATTGCTGTCGATTTTCGAA 58.766 40.909 23.21 0.00 43.73 3.71
2344 2422 3.153369 AGGGTTGATGTACACATTGCA 57.847 42.857 0.00 0.00 36.57 4.08
2352 2430 4.705991 TGATGTACACATTGCATTGGTCAT 59.294 37.500 12.87 10.31 36.57 3.06
2355 2433 3.861276 ACACATTGCATTGGTCATCAG 57.139 42.857 12.87 0.00 0.00 2.90
2427 2505 5.185454 CAGCAAAATATCCACCACTGTCTA 58.815 41.667 0.00 0.00 0.00 2.59
2440 2518 2.735663 CACTGTCTACTCTTTGCAGCAG 59.264 50.000 0.00 0.00 0.00 4.24
2455 2629 2.288030 GCAGCAGCACAAATCTCTGTTT 60.288 45.455 0.00 0.00 41.58 2.83
2457 2631 3.252701 CAGCAGCACAAATCTCTGTTTCT 59.747 43.478 0.00 0.00 0.00 2.52
2912 3100 1.617322 ATGGCCTGCTTGCTGATATG 58.383 50.000 3.32 0.00 0.00 1.78
2936 3124 8.138365 TGTTGTTTTGTCATCTACTGTTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
3065 3261 9.884814 AATAAGTGATCTAGTGATTAGGTAGGT 57.115 33.333 0.00 0.00 32.19 3.08
3070 3266 9.134055 GTGATCTAGTGATTAGGTAGGTACTTT 57.866 37.037 0.00 0.00 34.28 2.66
3071 3267 9.132923 TGATCTAGTGATTAGGTAGGTACTTTG 57.867 37.037 0.00 0.00 34.28 2.77
3072 3268 9.352191 GATCTAGTGATTAGGTAGGTACTTTGA 57.648 37.037 0.00 0.00 34.28 2.69
3074 3270 9.132923 TCTAGTGATTAGGTAGGTACTTTGATG 57.867 37.037 0.00 0.00 41.75 3.07
3076 3272 8.554490 AGTGATTAGGTAGGTACTTTGATGAT 57.446 34.615 0.00 0.00 41.75 2.45
3077 3273 8.993424 AGTGATTAGGTAGGTACTTTGATGATT 58.007 33.333 0.00 0.00 41.75 2.57
3078 3274 9.614792 GTGATTAGGTAGGTACTTTGATGATTT 57.385 33.333 0.00 0.00 41.75 2.17
3089 3285 9.508567 GGTACTTTGATGATTTATTCTTTCAGC 57.491 33.333 0.00 0.00 0.00 4.26
3090 3286 9.508567 GTACTTTGATGATTTATTCTTTCAGCC 57.491 33.333 0.00 0.00 0.00 4.85
3269 3474 0.549950 AGAATCCATGGCAGGACTGG 59.450 55.000 6.96 0.00 41.30 4.00
3270 3475 0.548031 GAATCCATGGCAGGACTGGA 59.452 55.000 6.96 9.82 41.30 3.86
3271 3476 0.257039 AATCCATGGCAGGACTGGAC 59.743 55.000 6.96 0.00 41.65 4.02
3273 3478 1.077930 CCATGGCAGGACTGGACTG 60.078 63.158 0.00 0.00 38.95 3.51
3274 3479 1.077930 CATGGCAGGACTGGACTGG 60.078 63.158 0.00 0.00 36.48 4.00
3277 3482 1.352622 TGGCAGGACTGGACTGGTTT 61.353 55.000 1.01 0.00 36.48 3.27
3313 3518 3.987868 GTCTGACGAACAATAGCACTGAA 59.012 43.478 0.00 0.00 0.00 3.02
3314 3519 3.987868 TCTGACGAACAATAGCACTGAAC 59.012 43.478 0.00 0.00 0.00 3.18
3315 3520 3.723260 TGACGAACAATAGCACTGAACA 58.277 40.909 0.00 0.00 0.00 3.18
3316 3521 4.123506 TGACGAACAATAGCACTGAACAA 58.876 39.130 0.00 0.00 0.00 2.83
3317 3522 4.572795 TGACGAACAATAGCACTGAACAAA 59.427 37.500 0.00 0.00 0.00 2.83
3318 3523 5.095691 ACGAACAATAGCACTGAACAAAG 57.904 39.130 0.00 0.00 0.00 2.77
3319 3524 3.908382 CGAACAATAGCACTGAACAAAGC 59.092 43.478 0.00 0.00 0.00 3.51
3320 3525 4.554526 CGAACAATAGCACTGAACAAAGCA 60.555 41.667 0.00 0.00 0.00 3.91
3321 3526 4.494350 ACAATAGCACTGAACAAAGCAG 57.506 40.909 0.00 0.00 39.26 4.24
3322 3527 4.136796 ACAATAGCACTGAACAAAGCAGA 58.863 39.130 0.00 0.00 36.86 4.26
3323 3528 4.580167 ACAATAGCACTGAACAAAGCAGAA 59.420 37.500 0.00 0.00 36.86 3.02
3324 3529 5.067674 ACAATAGCACTGAACAAAGCAGAAA 59.932 36.000 0.00 0.00 36.86 2.52
3325 3530 5.772825 ATAGCACTGAACAAAGCAGAAAA 57.227 34.783 0.00 0.00 36.86 2.29
3326 3531 4.454728 AGCACTGAACAAAGCAGAAAAA 57.545 36.364 0.00 0.00 36.86 1.94
3391 3596 9.611284 TCGTTTGTATCAAAGAGAATCAAAATG 57.389 29.630 0.00 0.00 37.82 2.32
3392 3597 9.398170 CGTTTGTATCAAAGAGAATCAAAATGT 57.602 29.630 0.00 0.00 37.82 2.71
3396 3601 9.681692 TGTATCAAAGAGAATCAAAATGTGTTG 57.318 29.630 0.00 0.00 37.82 3.33
3397 3602 9.897744 GTATCAAAGAGAATCAAAATGTGTTGA 57.102 29.630 0.00 0.00 41.59 3.18
3414 3619 9.850628 AATGTGTTGATTAAAGTGATGAAGATG 57.149 29.630 0.00 0.00 0.00 2.90
3415 3620 7.819644 TGTGTTGATTAAAGTGATGAAGATGG 58.180 34.615 0.00 0.00 0.00 3.51
3416 3621 7.665145 TGTGTTGATTAAAGTGATGAAGATGGA 59.335 33.333 0.00 0.00 0.00 3.41
3417 3622 7.965107 GTGTTGATTAAAGTGATGAAGATGGAC 59.035 37.037 0.00 0.00 0.00 4.02
3418 3623 7.665145 TGTTGATTAAAGTGATGAAGATGGACA 59.335 33.333 0.00 0.00 0.00 4.02
3419 3624 8.514594 GTTGATTAAAGTGATGAAGATGGACAA 58.485 33.333 0.00 0.00 0.00 3.18
3420 3625 8.044060 TGATTAAAGTGATGAAGATGGACAAC 57.956 34.615 0.00 0.00 0.00 3.32
3421 3626 7.884877 TGATTAAAGTGATGAAGATGGACAACT 59.115 33.333 0.00 0.00 0.00 3.16
3422 3627 5.954296 AAAGTGATGAAGATGGACAACTG 57.046 39.130 0.00 0.00 0.00 3.16
3423 3628 4.897509 AGTGATGAAGATGGACAACTGA 57.102 40.909 0.00 0.00 0.00 3.41
3424 3629 5.233083 AGTGATGAAGATGGACAACTGAA 57.767 39.130 0.00 0.00 0.00 3.02
3425 3630 4.999950 AGTGATGAAGATGGACAACTGAAC 59.000 41.667 0.00 0.00 0.00 3.18
3426 3631 4.756642 GTGATGAAGATGGACAACTGAACA 59.243 41.667 0.00 0.00 0.00 3.18
3427 3632 4.999311 TGATGAAGATGGACAACTGAACAG 59.001 41.667 0.00 0.00 0.00 3.16
3428 3633 4.687901 TGAAGATGGACAACTGAACAGA 57.312 40.909 8.87 0.00 0.00 3.41
3429 3634 4.635223 TGAAGATGGACAACTGAACAGAG 58.365 43.478 8.87 3.61 0.00 3.35
3430 3635 4.101585 TGAAGATGGACAACTGAACAGAGT 59.898 41.667 8.87 6.60 0.00 3.24
3431 3636 4.000331 AGATGGACAACTGAACAGAGTG 58.000 45.455 8.87 8.37 0.00 3.51
3432 3637 3.643320 AGATGGACAACTGAACAGAGTGA 59.357 43.478 8.87 0.00 0.00 3.41
3433 3638 4.285517 AGATGGACAACTGAACAGAGTGAT 59.714 41.667 8.87 2.28 0.00 3.06
3434 3639 3.732212 TGGACAACTGAACAGAGTGATG 58.268 45.455 8.87 2.82 0.00 3.07
3435 3640 3.387699 TGGACAACTGAACAGAGTGATGA 59.612 43.478 8.87 0.00 0.00 2.92
3436 3641 4.040829 TGGACAACTGAACAGAGTGATGAT 59.959 41.667 8.87 0.00 0.00 2.45
3563 3768 2.152699 GCTCATGGACGACGACACG 61.153 63.158 0.00 0.00 39.31 4.49
3911 4122 2.828868 GCCATGGCCATCGACCTA 59.171 61.111 27.24 0.00 34.56 3.08
3914 4125 1.695114 CCATGGCCATCGACCTACCA 61.695 60.000 17.61 0.00 34.28 3.25
4010 4224 4.785453 GCCAGGGGAGCCAAGACG 62.785 72.222 0.00 0.00 0.00 4.18
4109 4323 1.726791 GACGTGCTTGTCATGTACCTG 59.273 52.381 0.00 0.00 44.52 4.00
4178 4392 2.266055 CTGCAGGAGAACCCCGAC 59.734 66.667 5.57 0.00 36.73 4.79
4231 4447 2.437180 CTGCAAGAGCGCCATGGA 60.437 61.111 18.40 0.52 46.23 3.41
4249 4465 3.942829 TGGATGGACACTTCACAAGATC 58.057 45.455 0.00 0.00 0.00 2.75
4250 4466 3.327464 TGGATGGACACTTCACAAGATCA 59.673 43.478 0.00 0.00 0.00 2.92
4251 4467 3.686726 GGATGGACACTTCACAAGATCAC 59.313 47.826 0.00 0.00 0.00 3.06
4252 4468 3.126001 TGGACACTTCACAAGATCACC 57.874 47.619 0.00 0.00 0.00 4.02
4253 4469 2.437651 TGGACACTTCACAAGATCACCA 59.562 45.455 0.00 0.00 0.00 4.17
4256 4472 4.318332 GACACTTCACAAGATCACCATGA 58.682 43.478 0.00 0.00 0.00 3.07
4257 4473 4.717877 ACACTTCACAAGATCACCATGAA 58.282 39.130 0.00 0.00 0.00 2.57
4258 4474 5.319453 ACACTTCACAAGATCACCATGAAT 58.681 37.500 0.00 0.00 0.00 2.57
4260 4476 6.942005 ACACTTCACAAGATCACCATGAATAA 59.058 34.615 0.00 0.00 0.00 1.40
4264 4498 7.943079 TCACAAGATCACCATGAATAATTGT 57.057 32.000 0.00 0.00 0.00 2.71
4283 4520 9.852091 ATAATTGTTGAATCTTCTTCTTCTTGC 57.148 29.630 0.00 0.00 0.00 4.01
4323 4560 0.321021 AGGCGATCATGAGGAGCATC 59.679 55.000 17.67 2.61 34.15 3.91
4415 4657 1.206610 CTGCATACACTCTGCCACTCT 59.793 52.381 0.00 0.00 38.89 3.24
4416 4658 1.066645 TGCATACACTCTGCCACTCTG 60.067 52.381 0.00 0.00 38.89 3.35
4417 4659 1.205655 GCATACACTCTGCCACTCTGA 59.794 52.381 0.00 0.00 33.44 3.27
4423 4665 3.817647 ACACTCTGCCACTCTGAATTTTC 59.182 43.478 0.00 0.00 0.00 2.29
4424 4666 3.070018 ACTCTGCCACTCTGAATTTTCG 58.930 45.455 0.00 0.00 0.00 3.46
4448 4703 6.216569 GTTCACTCACTCACTTATGTCTGAA 58.783 40.000 0.00 0.00 0.00 3.02
4449 4704 5.773575 TCACTCACTCACTTATGTCTGAAC 58.226 41.667 0.00 0.00 0.00 3.18
4452 4707 6.648310 CACTCACTCACTTATGTCTGAACAAT 59.352 38.462 0.00 0.00 39.30 2.71
4453 4708 6.648310 ACTCACTCACTTATGTCTGAACAATG 59.352 38.462 0.00 0.00 39.30 2.82
4460 4721 2.259266 TGTCTGAACAATGCTCTGCA 57.741 45.000 0.00 0.00 44.86 4.41
4668 4943 3.441222 TGTGTTCATCCTCAATGCATCAC 59.559 43.478 0.00 0.00 35.17 3.06
4685 4963 5.221481 TGCATCACATTTGAGTTTCATGGTT 60.221 36.000 0.00 0.00 34.35 3.67
4840 5118 2.619074 CCTTCAAGATGGGAGGTTGGTC 60.619 54.545 0.00 0.00 0.00 4.02
5005 5287 1.639298 GCAACGATCTCGCCAAGCTT 61.639 55.000 0.00 0.00 44.43 3.74
5041 5323 1.635487 CTCCACCATTTCCTCCTTGGA 59.365 52.381 0.00 0.00 44.51 3.53
5067 5354 1.071699 GTAAGCTTCCAGACCACCACA 59.928 52.381 0.00 0.00 0.00 4.17
5122 5418 1.355210 CAACCAACGGTGACTGTGC 59.645 57.895 0.00 0.00 35.34 4.57
5318 5648 2.491693 CCAGAAGCGCCAAATTTAGGAA 59.508 45.455 2.29 0.00 0.00 3.36
5326 5656 4.327087 GCGCCAAATTTAGGAAAACTCATG 59.673 41.667 0.00 0.00 0.00 3.07
5333 5663 6.824305 ATTTAGGAAAACTCATGTGTCCAG 57.176 37.500 0.03 0.00 35.04 3.86
5335 5665 3.744660 AGGAAAACTCATGTGTCCAGAC 58.255 45.455 0.03 0.00 35.04 3.51
5369 5699 2.240493 AATAGCGAGGCGTTATTGCT 57.760 45.000 7.87 4.25 40.54 3.91
5469 5800 5.553290 TTTGTGTCGAAACAGAAATGTCA 57.447 34.783 8.73 0.00 41.99 3.58
5470 5801 5.553290 TTGTGTCGAAACAGAAATGTCAA 57.447 34.783 8.73 0.00 35.87 3.18
5471 5802 5.749596 TGTGTCGAAACAGAAATGTCAAT 57.250 34.783 3.71 0.00 35.64 2.57
5472 5803 6.852858 TGTGTCGAAACAGAAATGTCAATA 57.147 33.333 3.71 0.00 35.64 1.90
5473 5804 6.887368 TGTGTCGAAACAGAAATGTCAATAG 58.113 36.000 3.71 0.00 35.64 1.73
5474 5805 6.481976 TGTGTCGAAACAGAAATGTCAATAGT 59.518 34.615 3.71 0.00 35.64 2.12
5475 5806 6.792250 GTGTCGAAACAGAAATGTCAATAGTG 59.208 38.462 0.00 0.00 35.64 2.74
5476 5807 6.481976 TGTCGAAACAGAAATGTCAATAGTGT 59.518 34.615 0.00 0.00 0.00 3.55
5477 5808 7.011950 TGTCGAAACAGAAATGTCAATAGTGTT 59.988 33.333 0.00 0.00 0.00 3.32
5478 5809 7.321271 GTCGAAACAGAAATGTCAATAGTGTTG 59.679 37.037 0.00 0.00 0.00 3.33
5479 5810 6.086765 CGAAACAGAAATGTCAATAGTGTTGC 59.913 38.462 0.00 0.00 0.00 4.17
5480 5811 5.376854 ACAGAAATGTCAATAGTGTTGCC 57.623 39.130 0.00 0.00 0.00 4.52
5481 5812 4.083324 ACAGAAATGTCAATAGTGTTGCCG 60.083 41.667 0.00 0.00 0.00 5.69
5482 5813 2.919666 AATGTCAATAGTGTTGCCGC 57.080 45.000 0.00 0.00 0.00 6.53
5483 5814 1.094785 ATGTCAATAGTGTTGCCGCC 58.905 50.000 0.00 0.00 0.00 6.13
5484 5815 1.295357 TGTCAATAGTGTTGCCGCCG 61.295 55.000 0.00 0.00 0.00 6.46
5485 5816 1.017177 GTCAATAGTGTTGCCGCCGA 61.017 55.000 0.00 0.00 0.00 5.54
5486 5817 0.320858 TCAATAGTGTTGCCGCCGAA 60.321 50.000 0.00 0.00 0.00 4.30
5487 5818 0.096976 CAATAGTGTTGCCGCCGAAG 59.903 55.000 0.00 0.00 0.00 3.79
5488 5819 0.321298 AATAGTGTTGCCGCCGAAGT 60.321 50.000 0.00 0.00 0.00 3.01
5489 5820 0.533491 ATAGTGTTGCCGCCGAAGTA 59.467 50.000 0.00 0.00 0.00 2.24
5490 5821 0.317799 TAGTGTTGCCGCCGAAGTAA 59.682 50.000 0.00 0.00 0.00 2.24
5491 5822 1.205820 GTGTTGCCGCCGAAGTAAC 59.794 57.895 0.00 0.00 0.00 2.50
5492 5823 1.070105 TGTTGCCGCCGAAGTAACT 59.930 52.632 0.00 0.00 0.00 2.24
5493 5824 0.533308 TGTTGCCGCCGAAGTAACTT 60.533 50.000 0.00 0.00 0.00 2.66
5494 5825 0.110373 GTTGCCGCCGAAGTAACTTG 60.110 55.000 0.00 0.00 0.00 3.16
5495 5826 1.847890 TTGCCGCCGAAGTAACTTGC 61.848 55.000 0.00 0.00 0.00 4.01
5496 5827 2.322081 GCCGCCGAAGTAACTTGCA 61.322 57.895 0.00 0.00 0.00 4.08
5497 5828 1.644786 GCCGCCGAAGTAACTTGCAT 61.645 55.000 0.00 0.00 0.00 3.96
5498 5829 0.373716 CCGCCGAAGTAACTTGCATC 59.626 55.000 0.00 0.00 0.00 3.91
5499 5830 0.025001 CGCCGAAGTAACTTGCATCG 59.975 55.000 0.00 0.00 0.00 3.84
5500 5831 1.355971 GCCGAAGTAACTTGCATCGA 58.644 50.000 5.25 0.00 35.65 3.59
5501 5832 1.730064 GCCGAAGTAACTTGCATCGAA 59.270 47.619 5.25 0.00 35.65 3.71
5502 5833 2.158841 GCCGAAGTAACTTGCATCGAAA 59.841 45.455 5.25 0.00 35.65 3.46
5503 5834 3.732943 CCGAAGTAACTTGCATCGAAAC 58.267 45.455 5.25 0.00 35.65 2.78
5504 5835 3.424433 CCGAAGTAACTTGCATCGAAACC 60.424 47.826 5.25 0.00 35.65 3.27
5505 5836 3.432252 CGAAGTAACTTGCATCGAAACCT 59.568 43.478 0.00 0.00 35.65 3.50
5506 5837 4.084013 CGAAGTAACTTGCATCGAAACCTT 60.084 41.667 0.00 0.00 35.65 3.50
5507 5838 4.749245 AGTAACTTGCATCGAAACCTTG 57.251 40.909 0.00 0.00 0.00 3.61
5508 5839 3.502211 AGTAACTTGCATCGAAACCTTGG 59.498 43.478 0.00 0.00 0.00 3.61
5509 5840 1.247567 ACTTGCATCGAAACCTTGGG 58.752 50.000 0.00 0.00 0.00 4.12
5510 5841 1.247567 CTTGCATCGAAACCTTGGGT 58.752 50.000 0.00 0.00 37.65 4.51
5511 5842 0.958091 TTGCATCGAAACCTTGGGTG 59.042 50.000 0.00 0.00 35.34 4.61
5512 5843 0.109532 TGCATCGAAACCTTGGGTGA 59.890 50.000 0.00 0.00 35.34 4.02
5513 5844 1.271871 TGCATCGAAACCTTGGGTGAT 60.272 47.619 0.00 0.00 35.34 3.06
5514 5845 1.818674 GCATCGAAACCTTGGGTGATT 59.181 47.619 0.00 0.00 35.34 2.57
5515 5846 2.159379 GCATCGAAACCTTGGGTGATTC 60.159 50.000 0.00 0.00 35.34 2.52
5516 5847 3.347216 CATCGAAACCTTGGGTGATTCT 58.653 45.455 0.00 0.00 35.34 2.40
5517 5848 2.778299 TCGAAACCTTGGGTGATTCTG 58.222 47.619 0.00 0.00 35.34 3.02
5518 5849 1.200020 CGAAACCTTGGGTGATTCTGC 59.800 52.381 0.00 0.00 35.34 4.26
5519 5850 2.238521 GAAACCTTGGGTGATTCTGCA 58.761 47.619 0.00 0.00 35.34 4.41
5520 5851 2.610438 AACCTTGGGTGATTCTGCAT 57.390 45.000 0.00 0.00 35.34 3.96
5521 5852 1.843368 ACCTTGGGTGATTCTGCATG 58.157 50.000 0.00 0.00 32.98 4.06
5522 5853 0.458669 CCTTGGGTGATTCTGCATGC 59.541 55.000 11.82 11.82 0.00 4.06
5523 5854 0.458669 CTTGGGTGATTCTGCATGCC 59.541 55.000 16.68 0.00 0.00 4.40
5524 5855 1.314534 TTGGGTGATTCTGCATGCCG 61.315 55.000 16.68 9.39 0.00 5.69
5525 5856 1.451927 GGGTGATTCTGCATGCCGA 60.452 57.895 16.68 12.12 0.00 5.54
5526 5857 1.442526 GGGTGATTCTGCATGCCGAG 61.443 60.000 16.68 7.00 0.00 4.63
5527 5858 0.745845 GGTGATTCTGCATGCCGAGT 60.746 55.000 16.68 11.40 0.00 4.18
5528 5859 0.376152 GTGATTCTGCATGCCGAGTG 59.624 55.000 16.68 0.30 0.00 3.51
5529 5860 0.745486 TGATTCTGCATGCCGAGTGG 60.745 55.000 16.68 0.00 38.77 4.00
5530 5861 0.745845 GATTCTGCATGCCGAGTGGT 60.746 55.000 16.68 1.83 37.67 4.16
5531 5862 0.745845 ATTCTGCATGCCGAGTGGTC 60.746 55.000 16.68 0.00 37.67 4.02
5532 5863 2.046988 CTGCATGCCGAGTGGTCA 60.047 61.111 16.68 0.00 37.67 4.02
5533 5864 2.358615 TGCATGCCGAGTGGTCAC 60.359 61.111 16.68 0.00 37.67 3.67
5534 5865 3.490759 GCATGCCGAGTGGTCACG 61.491 66.667 6.36 0.00 37.67 4.35
5535 5866 3.490759 CATGCCGAGTGGTCACGC 61.491 66.667 0.00 0.00 37.67 5.34
5536 5867 4.002506 ATGCCGAGTGGTCACGCA 62.003 61.111 5.76 5.37 37.67 5.24
5537 5868 3.529341 ATGCCGAGTGGTCACGCAA 62.529 57.895 5.76 0.00 37.67 4.85
5538 5869 3.712881 GCCGAGTGGTCACGCAAC 61.713 66.667 5.76 0.00 37.67 4.17
5539 5870 2.029073 CCGAGTGGTCACGCAACT 59.971 61.111 5.76 0.00 36.20 3.16
5540 5871 1.287815 CCGAGTGGTCACGCAACTA 59.712 57.895 5.76 0.00 36.20 2.24
5541 5872 0.108804 CCGAGTGGTCACGCAACTAT 60.109 55.000 5.76 0.00 36.20 2.12
5542 5873 1.671850 CCGAGTGGTCACGCAACTATT 60.672 52.381 5.76 0.00 36.20 1.73
5543 5874 2.416296 CCGAGTGGTCACGCAACTATTA 60.416 50.000 5.76 0.00 36.20 0.98
5544 5875 3.444916 CGAGTGGTCACGCAACTATTAT 58.555 45.455 5.76 0.00 36.20 1.28
5545 5876 3.863424 CGAGTGGTCACGCAACTATTATT 59.137 43.478 5.76 0.00 36.20 1.40
5546 5877 4.026804 CGAGTGGTCACGCAACTATTATTC 60.027 45.833 5.76 0.00 36.20 1.75
5547 5878 3.863424 AGTGGTCACGCAACTATTATTCG 59.137 43.478 0.00 0.00 36.20 3.34
5548 5879 3.861113 GTGGTCACGCAACTATTATTCGA 59.139 43.478 0.00 0.00 0.00 3.71
5549 5880 4.506654 GTGGTCACGCAACTATTATTCGAT 59.493 41.667 0.00 0.00 0.00 3.59
5550 5881 5.006358 GTGGTCACGCAACTATTATTCGATT 59.994 40.000 0.00 0.00 0.00 3.34
5551 5882 6.199531 GTGGTCACGCAACTATTATTCGATTA 59.800 38.462 0.00 0.00 0.00 1.75
5552 5883 6.757478 TGGTCACGCAACTATTATTCGATTAA 59.243 34.615 2.49 2.49 0.00 1.40
5553 5884 7.061634 GGTCACGCAACTATTATTCGATTAAC 58.938 38.462 2.06 0.00 0.00 2.01
5554 5885 7.042925 GGTCACGCAACTATTATTCGATTAACT 60.043 37.037 2.06 0.00 0.00 2.24
5555 5886 8.961092 GTCACGCAACTATTATTCGATTAACTA 58.039 33.333 2.06 0.00 0.00 2.24
5556 5887 9.687210 TCACGCAACTATTATTCGATTAACTAT 57.313 29.630 2.06 0.00 0.00 2.12
5590 5922 2.741517 GGCGCCAAATTAATTTGCACTT 59.258 40.909 28.17 0.00 44.32 3.16
5596 5928 6.607689 GCCAAATTAATTTGCACTTAAACCC 58.392 36.000 28.17 7.89 44.32 4.11
5615 5947 0.681887 CTGGGTGATTCTGCATGCCA 60.682 55.000 16.68 1.80 0.00 4.92
5616 5948 0.681887 TGGGTGATTCTGCATGCCAG 60.682 55.000 16.68 12.67 43.17 4.85
5626 5958 2.981560 GCATGCCAGGTGGTCGTTG 61.982 63.158 6.36 0.00 37.57 4.10
5631 5963 2.280524 CAGGTGGTCGTTGCCGAA 60.281 61.111 0.00 0.00 46.26 4.30
5694 6027 1.859302 ACTTGAGAGGCGAGAATCCT 58.141 50.000 0.00 0.00 36.46 3.24
5695 6028 2.183679 ACTTGAGAGGCGAGAATCCTT 58.816 47.619 0.00 0.00 33.24 3.36
5697 6030 0.826715 TGAGAGGCGAGAATCCTTGG 59.173 55.000 0.00 0.00 33.24 3.61
5712 6045 2.511218 TCCTTGGATGGAAGGATGGAAG 59.489 50.000 0.00 0.00 45.52 3.46
5723 6056 6.546484 TGGAAGGATGGAAGAAATGGATATC 58.454 40.000 0.00 0.00 0.00 1.63
5740 6073 0.251354 ATCCTTGCGAGCACTGATGT 59.749 50.000 0.00 0.00 0.00 3.06
5742 6075 0.671472 CCTTGCGAGCACTGATGTCA 60.671 55.000 0.00 0.00 0.00 3.58
5775 6108 1.869767 GATGGCGCTCCTGATAAGTTG 59.130 52.381 7.64 0.00 0.00 3.16
5781 6114 3.437049 GCGCTCCTGATAAGTTGACTTTT 59.563 43.478 0.00 0.00 37.40 2.27
5786 6119 7.247019 GCTCCTGATAAGTTGACTTTTCAATC 58.753 38.462 14.81 7.57 43.72 2.67
5789 6122 7.017645 CCTGATAAGTTGACTTTTCAATCACG 58.982 38.462 14.81 6.21 43.72 4.35
5791 6124 8.322906 TGATAAGTTGACTTTTCAATCACGAT 57.677 30.769 12.55 0.00 43.72 3.73
5795 6128 5.687285 AGTTGACTTTTCAATCACGATTTGC 59.313 36.000 0.00 0.00 43.72 3.68
5811 6144 7.041440 TCACGATTTGCAAGAGAACAAAATCTA 60.041 33.333 0.00 0.00 39.09 1.98
5888 6223 2.203470 TGATGCCTCAACAATCAGCA 57.797 45.000 0.00 0.00 37.94 4.41
5924 6259 4.818546 AGGCAAAGTCATATGTACTGCATC 59.181 41.667 17.30 6.90 38.94 3.91
5931 6266 9.486497 AAAGTCATATGTACTGCATCTATTCTG 57.514 33.333 1.90 0.00 38.94 3.02
5934 6269 8.084684 GTCATATGTACTGCATCTATTCTGTGA 58.915 37.037 1.90 0.00 38.94 3.58
5939 6275 5.536554 ACTGCATCTATTCTGTGAAAACG 57.463 39.130 0.00 0.00 0.00 3.60
5944 6280 6.855914 TGCATCTATTCTGTGAAAACGAAAAC 59.144 34.615 0.00 0.00 0.00 2.43
5975 6311 2.956132 TCTGCAAATGGGGAAAAGACA 58.044 42.857 0.00 0.00 0.00 3.41
5976 6312 3.509442 TCTGCAAATGGGGAAAAGACAT 58.491 40.909 0.00 0.00 0.00 3.06
6000 6337 1.321743 GATGTGCAAAGTAGACGCGAG 59.678 52.381 15.93 0.00 0.00 5.03
6089 6427 3.686726 AGAATTCATCTTGCGTGAGAACC 59.313 43.478 8.44 0.00 33.39 3.62
6129 6467 8.846943 ATAAGTTGTGAGTTGTCATTGTCATA 57.153 30.769 0.00 0.00 34.36 2.15
6130 6468 7.750229 AAGTTGTGAGTTGTCATTGTCATAT 57.250 32.000 0.00 0.00 34.36 1.78
6174 6513 1.061546 TTTGTTCCGTCCTAGGGCTT 58.938 50.000 12.53 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.953686 CGACAGGTTTGGGTTTGATGT 59.046 47.619 0.00 0.00 0.00 3.06
34 35 7.559590 AATAAAACCTGAAGAGAATCATCCG 57.440 36.000 0.00 0.00 37.82 4.18
60 61 3.729966 GAACCAAACTCGAAGACTCCTT 58.270 45.455 0.00 0.00 34.81 3.36
108 109 7.607991 AGCGGGGAGAATATTATTTCTACATTG 59.392 37.037 0.00 0.00 38.17 2.82
110 111 7.259088 AGCGGGGAGAATATTATTTCTACAT 57.741 36.000 0.00 0.00 38.17 2.29
141 142 3.059188 GTGATAACACACCAACGGAACAG 60.059 47.826 0.00 0.00 45.32 3.16
164 166 2.527123 TTGGTACACCCTCCGCCA 60.527 61.111 0.00 0.00 39.29 5.69
178 180 0.955919 GACTTGGAAGACCCGCTTGG 60.956 60.000 0.00 0.00 36.83 3.61
181 183 2.943978 CGGACTTGGAAGACCCGCT 61.944 63.158 10.36 0.00 37.53 5.52
184 186 1.295746 GACCGGACTTGGAAGACCC 59.704 63.158 9.46 0.00 37.53 4.46
192 194 1.374252 CCTCAACCGACCGGACTTG 60.374 63.158 16.07 10.10 38.96 3.16
193 195 1.405272 AACCTCAACCGACCGGACTT 61.405 55.000 16.07 0.00 38.96 3.01
207 210 4.957164 GGATCCACCGGAAACCTC 57.043 61.111 9.46 0.00 34.34 3.85
238 241 2.375174 ACTCCAAAGACCACAATAGCCA 59.625 45.455 0.00 0.00 0.00 4.75
254 257 3.056107 CGACAAGGGATGTAGAAACTCCA 60.056 47.826 0.00 0.00 44.12 3.86
268 271 2.162408 GAGAAGAAAATGCCGACAAGGG 59.838 50.000 0.00 0.00 41.48 3.95
273 276 1.740025 CCCAGAGAAGAAAATGCCGAC 59.260 52.381 0.00 0.00 0.00 4.79
274 277 1.340017 CCCCAGAGAAGAAAATGCCGA 60.340 52.381 0.00 0.00 0.00 5.54
275 278 1.098050 CCCCAGAGAAGAAAATGCCG 58.902 55.000 0.00 0.00 0.00 5.69
276 279 0.820226 GCCCCAGAGAAGAAAATGCC 59.180 55.000 0.00 0.00 0.00 4.40
277 280 0.453390 CGCCCCAGAGAAGAAAATGC 59.547 55.000 0.00 0.00 0.00 3.56
278 281 1.098050 CCGCCCCAGAGAAGAAAATG 58.902 55.000 0.00 0.00 0.00 2.32
279 282 0.681243 GCCGCCCCAGAGAAGAAAAT 60.681 55.000 0.00 0.00 0.00 1.82
291 297 2.510918 GAAGTAACTCGCCGCCCC 60.511 66.667 0.00 0.00 0.00 5.80
316 322 1.264288 CCAGGAAAAGTCGACAACTGC 59.736 52.381 19.50 6.27 38.58 4.40
321 327 1.540363 GCAGACCAGGAAAAGTCGACA 60.540 52.381 19.50 0.00 38.08 4.35
322 328 1.149148 GCAGACCAGGAAAAGTCGAC 58.851 55.000 7.70 7.70 38.08 4.20
323 329 0.756294 TGCAGACCAGGAAAAGTCGA 59.244 50.000 0.00 0.00 38.08 4.20
330 336 2.306805 AGTCATCAATGCAGACCAGGAA 59.693 45.455 0.00 0.00 32.82 3.36
344 350 4.866508 AGTAGTGTCCGAAAAGTCATCA 57.133 40.909 0.00 0.00 0.00 3.07
356 362 5.394224 AGAAGCTTGTAGAAGTAGTGTCC 57.606 43.478 2.10 0.00 0.00 4.02
360 366 4.080687 ACCGAGAAGCTTGTAGAAGTAGT 58.919 43.478 2.10 0.00 0.00 2.73
363 369 4.338379 AAACCGAGAAGCTTGTAGAAGT 57.662 40.909 2.10 0.00 0.00 3.01
366 372 6.764560 ACTTTTTAAACCGAGAAGCTTGTAGA 59.235 34.615 2.10 0.00 0.00 2.59
370 376 6.507929 GCAAACTTTTTAAACCGAGAAGCTTG 60.508 38.462 2.10 7.75 30.60 4.01
376 382 5.732247 GCAGAGCAAACTTTTTAAACCGAGA 60.732 40.000 0.00 0.00 0.00 4.04
377 383 4.441087 GCAGAGCAAACTTTTTAAACCGAG 59.559 41.667 0.00 0.00 0.00 4.63
379 385 3.489416 GGCAGAGCAAACTTTTTAAACCG 59.511 43.478 0.00 0.00 0.00 4.44
382 388 5.105146 TCCTTGGCAGAGCAAACTTTTTAAA 60.105 36.000 0.00 0.00 0.00 1.52
401 408 0.605083 GCTTTTGGGCCTCTTCCTTG 59.395 55.000 4.53 0.00 0.00 3.61
416 423 2.566952 GCATAACTCAATGCCGCTTT 57.433 45.000 0.00 0.00 45.31 3.51
430 437 4.294523 GGTGCACCGTGAGCATAA 57.705 55.556 22.49 0.00 44.79 1.90
449 456 0.877649 CTCTTGCATCGATCCACCGG 60.878 60.000 0.00 0.00 0.00 5.28
454 461 4.742659 GTCTTCTTACTCTTGCATCGATCC 59.257 45.833 0.00 0.00 0.00 3.36
455 462 5.587289 AGTCTTCTTACTCTTGCATCGATC 58.413 41.667 0.00 0.00 0.00 3.69
465 472 2.231721 GGTGCCGAAGTCTTCTTACTCT 59.768 50.000 10.81 0.00 33.64 3.24
474 481 2.750350 CTTGGGGTGCCGAAGTCT 59.250 61.111 0.00 0.00 35.17 3.24
481 488 1.207811 CATTCAAATCCTTGGGGTGCC 59.792 52.381 0.00 0.00 33.01 5.01
517 524 6.014755 TGTCCTTGCAAACATTTCCATCAATA 60.015 34.615 0.00 0.00 0.00 1.90
522 529 3.552684 CGTGTCCTTGCAAACATTTCCAT 60.553 43.478 7.20 0.00 0.00 3.41
524 531 2.223711 ACGTGTCCTTGCAAACATTTCC 60.224 45.455 7.20 0.00 0.00 3.13
525 532 2.788786 CACGTGTCCTTGCAAACATTTC 59.211 45.455 7.58 0.00 0.00 2.17
526 533 2.425312 TCACGTGTCCTTGCAAACATTT 59.575 40.909 16.51 0.00 0.00 2.32
528 535 1.674359 TCACGTGTCCTTGCAAACAT 58.326 45.000 16.51 0.00 0.00 2.71
529 536 1.333308 CATCACGTGTCCTTGCAAACA 59.667 47.619 16.51 0.00 0.00 2.83
530 537 1.925946 GCATCACGTGTCCTTGCAAAC 60.926 52.381 16.51 0.00 33.58 2.93
531 538 0.310543 GCATCACGTGTCCTTGCAAA 59.689 50.000 16.51 0.00 33.58 3.68
534 541 0.593128 AAAGCATCACGTGTCCTTGC 59.407 50.000 16.51 18.71 0.00 4.01
535 542 5.794687 TTATAAAGCATCACGTGTCCTTG 57.205 39.130 16.51 10.31 0.00 3.61
600 615 1.098050 CCCTGATTTTCTTCGCCCTG 58.902 55.000 0.00 0.00 0.00 4.45
606 621 7.285401 TGCCACTAAATATCCCTGATTTTCTTC 59.715 37.037 0.00 0.00 0.00 2.87
621 636 6.569127 TGTATTTCCTCCTGCCACTAAATA 57.431 37.500 0.00 0.00 0.00 1.40
622 637 5.450818 TGTATTTCCTCCTGCCACTAAAT 57.549 39.130 0.00 0.00 0.00 1.40
627 642 7.335422 CAGATATAATGTATTTCCTCCTGCCAC 59.665 40.741 0.00 0.00 0.00 5.01
656 671 9.108284 TCACCGTTATTATTATGCATGGATATG 57.892 33.333 10.16 0.00 37.36 1.78
700 716 4.890988 TCAGTACCCTCTTATCCATTCCA 58.109 43.478 0.00 0.00 0.00 3.53
703 719 7.317722 GGTAATCAGTACCCTCTTATCCATT 57.682 40.000 0.00 0.00 46.03 3.16
716 732 3.535561 AGCATGCAGTGGTAATCAGTAC 58.464 45.455 21.98 0.00 36.63 2.73
719 735 5.565592 TTTTAGCATGCAGTGGTAATCAG 57.434 39.130 21.98 0.00 46.70 2.90
751 768 0.165511 CGCTTCTCTTTGCTGTCAGC 59.834 55.000 18.32 18.32 42.82 4.26
773 790 5.948742 AATCCAACACTTTCCCTTTTTCA 57.051 34.783 0.00 0.00 0.00 2.69
780 797 7.601130 GTGGTTAAAATAATCCAACACTTTCCC 59.399 37.037 0.00 0.00 0.00 3.97
815 832 1.741528 TATATACCAGCGCCGATCGA 58.258 50.000 18.66 0.00 41.67 3.59
821 838 0.529992 GGCCGATATATACCAGCGCC 60.530 60.000 2.29 0.00 0.00 6.53
824 841 0.529992 GCCGGCCGATATATACCAGC 60.530 60.000 30.73 13.82 0.00 4.85
825 842 0.104304 GGCCGGCCGATATATACCAG 59.896 60.000 33.60 6.52 0.00 4.00
826 843 2.204748 GGCCGGCCGATATATACCA 58.795 57.895 33.60 0.00 0.00 3.25
852 869 1.674441 CGAGGACTGACGCTTGGTATA 59.326 52.381 0.00 0.00 0.00 1.47
866 883 1.514443 GTACTGACGCTGCGAGGAC 60.514 63.158 30.47 19.19 0.00 3.85
887 904 2.675423 TAGCGCCTCGTGTGGTCT 60.675 61.111 2.29 0.00 36.42 3.85
888 905 2.202623 CTAGCGCCTCGTGTGGTC 60.203 66.667 2.29 0.00 36.42 4.02
917 934 2.348998 CCTGTTTGGCCGAGAGCT 59.651 61.111 0.00 0.00 43.05 4.09
927 944 1.440850 CACGCGTGATGCCTGTTTG 60.441 57.895 34.93 1.26 42.08 2.93
929 946 3.726517 GCACGCGTGATGCCTGTT 61.727 61.111 41.19 0.00 42.08 3.16
1246 1263 2.108425 AGGAAAGGAAAAGGGAGTGACC 59.892 50.000 0.00 0.00 38.08 4.02
1249 1266 3.574396 GGAAAGGAAAGGAAAAGGGAGTG 59.426 47.826 0.00 0.00 0.00 3.51
1271 1288 1.996786 GACATTGCTGGTGCGGATGG 61.997 60.000 0.00 0.00 43.34 3.51
1313 1331 0.388778 CAAAGCGCATGCATTGGACA 60.389 50.000 19.57 0.00 44.00 4.02
1352 1370 4.676951 CCGAAGCCCAGGCCCAAA 62.677 66.667 4.70 0.00 43.17 3.28
1376 1394 1.227380 CTTGGAATCCTCGGCCGAG 60.227 63.158 41.90 41.90 41.63 4.63
1377 1395 2.900273 CTTGGAATCCTCGGCCGA 59.100 61.111 29.03 29.03 0.00 5.54
1379 1397 1.821332 CAGCTTGGAATCCTCGGCC 60.821 63.158 0.00 0.00 0.00 6.13
1380 1398 1.821332 CCAGCTTGGAATCCTCGGC 60.821 63.158 0.00 2.29 40.96 5.54
1381 1399 1.907739 TCCAGCTTGGAATCCTCGG 59.092 57.895 0.00 0.00 45.00 4.63
1389 1407 3.319198 GTCCGGGTCCAGCTTGGA 61.319 66.667 0.00 1.25 45.98 3.53
1390 1408 4.410400 GGTCCGGGTCCAGCTTGG 62.410 72.222 0.00 0.00 39.43 3.61
1391 1409 3.636231 TGGTCCGGGTCCAGCTTG 61.636 66.667 9.04 0.00 0.00 4.01
1392 1410 3.637273 GTGGTCCGGGTCCAGCTT 61.637 66.667 13.50 0.00 35.49 3.74
1478 1512 1.610038 TGCATTGCAAGAAGACACCAG 59.390 47.619 9.33 0.00 34.76 4.00
1494 1528 4.212143 TGCTAAGACTTGTCTGATGCAT 57.788 40.909 0.00 0.00 0.00 3.96
1502 1536 5.007136 GGTATCTTGCATGCTAAGACTTGTC 59.993 44.000 25.00 16.36 37.03 3.18
1611 1663 3.640967 TCCAGGACCAATCAAACCTTTTG 59.359 43.478 0.00 0.00 0.00 2.44
1616 1668 3.496331 TCTTTCCAGGACCAATCAAACC 58.504 45.455 0.00 0.00 0.00 3.27
1644 1696 4.279420 ACATCTCCAAAGCAAGAAAGGTTC 59.721 41.667 0.00 0.00 0.00 3.62
1705 1757 3.636679 TCCATCCTTTCACCAACAACAA 58.363 40.909 0.00 0.00 0.00 2.83
1719 1771 5.965033 AAGTAGTTCATGTGATCCATCCT 57.035 39.130 0.00 0.00 0.00 3.24
1738 1790 1.078891 TCATGCATGCCCCCAAAGT 59.921 52.632 22.25 0.00 0.00 2.66
1752 1804 3.099619 GATGTGTGCGGCGGTCATG 62.100 63.158 9.78 0.00 0.00 3.07
1753 1805 2.819595 GATGTGTGCGGCGGTCAT 60.820 61.111 9.78 0.00 0.00 3.06
1754 1806 4.306967 TGATGTGTGCGGCGGTCA 62.307 61.111 9.78 0.00 0.00 4.02
1755 1807 2.829043 TAGTGATGTGTGCGGCGGTC 62.829 60.000 9.78 0.00 0.00 4.79
1756 1808 2.443260 TTAGTGATGTGTGCGGCGGT 62.443 55.000 9.78 0.00 0.00 5.68
1757 1809 1.695893 CTTAGTGATGTGTGCGGCGG 61.696 60.000 9.78 0.00 0.00 6.13
1758 1810 0.735978 TCTTAGTGATGTGTGCGGCG 60.736 55.000 0.51 0.51 0.00 6.46
1759 1811 1.328680 CATCTTAGTGATGTGTGCGGC 59.671 52.381 0.00 0.00 45.55 6.53
1773 1825 3.347216 GCACAAAAGGAGGAGCATCTTA 58.653 45.455 0.00 0.00 33.73 2.10
1795 1847 4.297510 TGCAAGTTTGTATGCATGAACAC 58.702 39.130 10.16 0.00 46.87 3.32
1803 1855 2.351738 GGGAGTGTGCAAGTTTGTATGC 60.352 50.000 0.00 0.00 42.86 3.14
1813 1865 0.681733 GAGACAGAGGGAGTGTGCAA 59.318 55.000 0.00 0.00 0.00 4.08
1815 1867 0.901124 ATGAGACAGAGGGAGTGTGC 59.099 55.000 0.00 0.00 0.00 4.57
1819 1871 9.253832 CATCTTATATTATGAGACAGAGGGAGT 57.746 37.037 0.62 0.00 0.00 3.85
1876 1928 9.208022 CTGATGTGTACTCACTCAAATAAAGAA 57.792 33.333 0.00 0.00 44.14 2.52
1877 1929 8.367911 ACTGATGTGTACTCACTCAAATAAAGA 58.632 33.333 0.00 0.00 44.14 2.52
1878 1930 8.539770 ACTGATGTGTACTCACTCAAATAAAG 57.460 34.615 0.00 0.00 44.14 1.85
1879 1931 8.902540 AACTGATGTGTACTCACTCAAATAAA 57.097 30.769 0.00 0.00 44.14 1.40
1880 1932 8.147704 TGAACTGATGTGTACTCACTCAAATAA 58.852 33.333 0.00 0.00 44.14 1.40
1881 1933 7.666623 TGAACTGATGTGTACTCACTCAAATA 58.333 34.615 0.00 0.00 44.14 1.40
1882 1934 6.524734 TGAACTGATGTGTACTCACTCAAAT 58.475 36.000 0.00 0.00 44.14 2.32
1883 1935 5.912892 TGAACTGATGTGTACTCACTCAAA 58.087 37.500 0.00 0.00 44.14 2.69
1884 1936 5.509670 CCTGAACTGATGTGTACTCACTCAA 60.510 44.000 0.00 0.00 44.14 3.02
1885 1937 4.021981 CCTGAACTGATGTGTACTCACTCA 60.022 45.833 0.00 5.16 44.14 3.41
1886 1938 4.489810 CCTGAACTGATGTGTACTCACTC 58.510 47.826 0.00 0.99 44.14 3.51
1889 1941 2.028112 GGCCTGAACTGATGTGTACTCA 60.028 50.000 0.00 0.00 0.00 3.41
1896 1948 0.108585 AACACGGCCTGAACTGATGT 59.891 50.000 0.00 0.00 0.00 3.06
1897 1949 0.518636 CAACACGGCCTGAACTGATG 59.481 55.000 0.00 0.00 0.00 3.07
1925 1977 0.249120 ATGACGACGGATCTTTGCCA 59.751 50.000 0.00 0.00 0.00 4.92
1940 1996 7.665690 ACTAGGTGATAGATGTTGATGATGAC 58.334 38.462 0.00 0.00 35.30 3.06
1959 2026 5.789574 AGATAGGATGCTAGCTACTAGGT 57.210 43.478 17.23 2.03 34.88 3.08
1962 2029 7.462590 TGAAGAAGATAGGATGCTAGCTACTA 58.537 38.462 17.23 14.87 0.00 1.82
2055 2125 8.546083 ACAAGACAACTCAGAATCCTATATCT 57.454 34.615 0.00 0.00 0.00 1.98
2056 2126 9.255304 GAACAAGACAACTCAGAATCCTATATC 57.745 37.037 0.00 0.00 0.00 1.63
2104 2174 6.058833 TGCCAAGTTGTGAACTAGATTACAA 58.941 36.000 6.29 6.29 41.91 2.41
2194 2264 1.607178 CATGCCTGAAGCCACCCAA 60.607 57.895 0.00 0.00 42.71 4.12
2240 2310 5.126067 GGACCATAGTACATTGCAACATCT 58.874 41.667 0.00 0.81 0.00 2.90
2262 2339 6.128117 CCAAAATCCTTCATTTGCATTTCTGG 60.128 38.462 0.00 0.00 34.69 3.86
2268 2345 4.258543 CAGCCAAAATCCTTCATTTGCAT 58.741 39.130 0.00 0.00 34.69 3.96
2287 2365 1.986698 AAATCGACAGCAATTGCAGC 58.013 45.000 30.89 18.02 45.16 5.25
2308 2386 4.941263 TCAACCCTATGAAAATGAGGTTCG 59.059 41.667 0.00 0.00 35.46 3.95
2309 2387 6.378280 ACATCAACCCTATGAAAATGAGGTTC 59.622 38.462 0.00 0.00 35.46 3.62
2311 2389 5.831103 ACATCAACCCTATGAAAATGAGGT 58.169 37.500 0.00 0.00 32.06 3.85
2344 2422 7.040617 GCATTTCATATCAGACTGATGACCAAT 60.041 37.037 25.26 15.39 37.70 3.16
2352 2430 5.238650 CAGCATGCATTTCATATCAGACTGA 59.761 40.000 21.98 7.80 33.19 3.41
2355 2433 4.795268 CCAGCATGCATTTCATATCAGAC 58.205 43.478 21.98 0.00 33.19 3.51
2440 2518 7.195839 AGAAAGTAGAAACAGAGATTTGTGC 57.804 36.000 0.00 0.00 0.00 4.57
2500 2677 4.718940 TCGATCACTGCTAGATGACAAA 57.281 40.909 0.00 0.00 0.00 2.83
2860 3047 8.782339 TCAGGTACAGTTTAATAAAAGTAGCC 57.218 34.615 17.43 12.69 34.70 3.93
2896 3084 1.747355 ACAACATATCAGCAAGCAGGC 59.253 47.619 0.00 0.00 0.00 4.85
2912 3100 7.168637 TCGACTAACAGTAGATGACAAAACAAC 59.831 37.037 0.00 0.00 0.00 3.32
2936 3124 2.250188 GATGCCGACCAAATTTGTTCG 58.750 47.619 25.81 25.81 41.85 3.95
3012 3206 1.349026 TGGCCTGCTCTATGGAATAGC 59.651 52.381 3.32 0.00 46.55 2.97
3063 3259 9.508567 GCTGAAAGAATAAATCATCAAAGTACC 57.491 33.333 0.00 0.00 34.07 3.34
3064 3260 9.508567 GGCTGAAAGAATAAATCATCAAAGTAC 57.491 33.333 0.00 0.00 34.07 2.73
3065 3261 9.466497 AGGCTGAAAGAATAAATCATCAAAGTA 57.534 29.630 0.00 0.00 34.07 2.24
3066 3262 8.358582 AGGCTGAAAGAATAAATCATCAAAGT 57.641 30.769 0.00 0.00 34.07 2.66
3070 3266 8.267183 TGTAGAGGCTGAAAGAATAAATCATCA 58.733 33.333 0.00 0.00 34.07 3.07
3071 3267 8.668510 TGTAGAGGCTGAAAGAATAAATCATC 57.331 34.615 0.00 0.00 34.07 2.92
3072 3268 9.638176 AATGTAGAGGCTGAAAGAATAAATCAT 57.362 29.630 0.00 0.00 34.07 2.45
3076 3272 9.520515 AGAAAATGTAGAGGCTGAAAGAATAAA 57.479 29.630 0.00 0.00 34.07 1.40
3077 3273 9.520515 AAGAAAATGTAGAGGCTGAAAGAATAA 57.479 29.630 0.00 0.00 34.07 1.40
3078 3274 9.167311 GAAGAAAATGTAGAGGCTGAAAGAATA 57.833 33.333 0.00 0.00 34.07 1.75
3079 3275 7.887495 AGAAGAAAATGTAGAGGCTGAAAGAAT 59.113 33.333 0.00 0.00 34.07 2.40
3080 3276 7.227156 AGAAGAAAATGTAGAGGCTGAAAGAA 58.773 34.615 0.00 0.00 34.07 2.52
3081 3277 6.773638 AGAAGAAAATGTAGAGGCTGAAAGA 58.226 36.000 0.00 0.00 34.07 2.52
3082 3278 7.173907 TGAAGAAGAAAATGTAGAGGCTGAAAG 59.826 37.037 0.00 0.00 0.00 2.62
3083 3279 6.998074 TGAAGAAGAAAATGTAGAGGCTGAAA 59.002 34.615 0.00 0.00 0.00 2.69
3084 3280 6.533730 TGAAGAAGAAAATGTAGAGGCTGAA 58.466 36.000 0.00 0.00 0.00 3.02
3085 3281 6.014242 TCTGAAGAAGAAAATGTAGAGGCTGA 60.014 38.462 0.00 0.00 29.54 4.26
3086 3282 6.091986 GTCTGAAGAAGAAAATGTAGAGGCTG 59.908 42.308 0.00 0.00 36.40 4.85
3087 3283 6.169800 GTCTGAAGAAGAAAATGTAGAGGCT 58.830 40.000 0.00 0.00 36.40 4.58
3088 3284 5.934625 TGTCTGAAGAAGAAAATGTAGAGGC 59.065 40.000 0.00 0.00 36.40 4.70
3089 3285 6.593382 CCTGTCTGAAGAAGAAAATGTAGAGG 59.407 42.308 0.00 0.00 36.40 3.69
3090 3286 6.091986 GCCTGTCTGAAGAAGAAAATGTAGAG 59.908 42.308 0.00 0.00 36.40 2.43
3217 3419 9.079833 CATCTCCATTAATTTCATGAACACAAC 57.920 33.333 7.89 0.00 0.00 3.32
3218 3420 8.252417 CCATCTCCATTAATTTCATGAACACAA 58.748 33.333 7.89 2.55 0.00 3.33
3220 3422 7.703621 CACCATCTCCATTAATTTCATGAACAC 59.296 37.037 7.89 0.00 0.00 3.32
3225 3427 7.337480 TGTCACCATCTCCATTAATTTCATG 57.663 36.000 0.00 0.00 0.00 3.07
3226 3428 7.835682 TCTTGTCACCATCTCCATTAATTTCAT 59.164 33.333 0.00 0.00 0.00 2.57
3227 3429 7.174413 TCTTGTCACCATCTCCATTAATTTCA 58.826 34.615 0.00 0.00 0.00 2.69
3293 3498 3.740832 TGTTCAGTGCTATTGTTCGTCAG 59.259 43.478 0.00 0.00 0.00 3.51
3297 3502 3.908382 GCTTTGTTCAGTGCTATTGTTCG 59.092 43.478 0.00 0.00 0.00 3.95
3298 3503 4.858935 TGCTTTGTTCAGTGCTATTGTTC 58.141 39.130 0.00 0.00 0.00 3.18
3299 3504 4.580167 TCTGCTTTGTTCAGTGCTATTGTT 59.420 37.500 0.00 0.00 33.48 2.83
3365 3570 9.611284 CATTTTGATTCTCTTTGATACAAACGA 57.389 29.630 0.00 0.00 33.47 3.85
3366 3571 9.398170 ACATTTTGATTCTCTTTGATACAAACG 57.602 29.630 0.00 0.00 33.47 3.60
3370 3575 9.681692 CAACACATTTTGATTCTCTTTGATACA 57.318 29.630 0.00 0.00 0.00 2.29
3371 3576 9.897744 TCAACACATTTTGATTCTCTTTGATAC 57.102 29.630 0.00 0.00 30.29 2.24
3388 3593 9.850628 CATCTTCATCACTTTAATCAACACATT 57.149 29.630 0.00 0.00 0.00 2.71
3389 3594 8.464404 CCATCTTCATCACTTTAATCAACACAT 58.536 33.333 0.00 0.00 0.00 3.21
3390 3595 7.665145 TCCATCTTCATCACTTTAATCAACACA 59.335 33.333 0.00 0.00 0.00 3.72
3391 3596 7.965107 GTCCATCTTCATCACTTTAATCAACAC 59.035 37.037 0.00 0.00 0.00 3.32
3392 3597 7.665145 TGTCCATCTTCATCACTTTAATCAACA 59.335 33.333 0.00 0.00 0.00 3.33
3393 3598 8.044060 TGTCCATCTTCATCACTTTAATCAAC 57.956 34.615 0.00 0.00 0.00 3.18
3394 3599 8.514594 GTTGTCCATCTTCATCACTTTAATCAA 58.485 33.333 0.00 0.00 0.00 2.57
3395 3600 7.884877 AGTTGTCCATCTTCATCACTTTAATCA 59.115 33.333 0.00 0.00 0.00 2.57
3396 3601 8.180267 CAGTTGTCCATCTTCATCACTTTAATC 58.820 37.037 0.00 0.00 0.00 1.75
3397 3602 7.884877 TCAGTTGTCCATCTTCATCACTTTAAT 59.115 33.333 0.00 0.00 0.00 1.40
3398 3603 7.223584 TCAGTTGTCCATCTTCATCACTTTAA 58.776 34.615 0.00 0.00 0.00 1.52
3399 3604 6.768483 TCAGTTGTCCATCTTCATCACTTTA 58.232 36.000 0.00 0.00 0.00 1.85
3400 3605 5.624159 TCAGTTGTCCATCTTCATCACTTT 58.376 37.500 0.00 0.00 0.00 2.66
3401 3606 5.233083 TCAGTTGTCCATCTTCATCACTT 57.767 39.130 0.00 0.00 0.00 3.16
3402 3607 4.897509 TCAGTTGTCCATCTTCATCACT 57.102 40.909 0.00 0.00 0.00 3.41
3403 3608 4.756642 TGTTCAGTTGTCCATCTTCATCAC 59.243 41.667 0.00 0.00 0.00 3.06
3404 3609 4.971939 TGTTCAGTTGTCCATCTTCATCA 58.028 39.130 0.00 0.00 0.00 3.07
3405 3610 5.240891 TCTGTTCAGTTGTCCATCTTCATC 58.759 41.667 0.00 0.00 0.00 2.92
3406 3611 5.221803 ACTCTGTTCAGTTGTCCATCTTCAT 60.222 40.000 0.00 0.00 0.00 2.57
3407 3612 4.101585 ACTCTGTTCAGTTGTCCATCTTCA 59.898 41.667 0.00 0.00 0.00 3.02
3408 3613 4.450419 CACTCTGTTCAGTTGTCCATCTTC 59.550 45.833 0.00 0.00 0.00 2.87
3409 3614 4.101585 TCACTCTGTTCAGTTGTCCATCTT 59.898 41.667 0.00 0.00 0.00 2.40
3410 3615 3.643320 TCACTCTGTTCAGTTGTCCATCT 59.357 43.478 0.00 0.00 0.00 2.90
3411 3616 3.995199 TCACTCTGTTCAGTTGTCCATC 58.005 45.455 0.00 0.00 0.00 3.51
3412 3617 4.040829 TCATCACTCTGTTCAGTTGTCCAT 59.959 41.667 0.00 0.00 0.00 3.41
3413 3618 3.387699 TCATCACTCTGTTCAGTTGTCCA 59.612 43.478 0.00 0.00 0.00 4.02
3414 3619 3.995199 TCATCACTCTGTTCAGTTGTCC 58.005 45.455 0.00 0.00 0.00 4.02
3415 3620 4.142945 GCATCATCACTCTGTTCAGTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
3416 3621 3.750130 GCATCATCACTCTGTTCAGTTGT 59.250 43.478 0.00 0.00 0.00 3.32
3417 3622 4.001652 AGCATCATCACTCTGTTCAGTTG 58.998 43.478 0.00 0.00 0.00 3.16
3418 3623 4.001652 CAGCATCATCACTCTGTTCAGTT 58.998 43.478 0.00 0.00 0.00 3.16
3419 3624 3.260128 TCAGCATCATCACTCTGTTCAGT 59.740 43.478 0.00 0.00 0.00 3.41
3420 3625 3.858247 TCAGCATCATCACTCTGTTCAG 58.142 45.455 0.00 0.00 0.00 3.02
3421 3626 3.967332 TCAGCATCATCACTCTGTTCA 57.033 42.857 0.00 0.00 0.00 3.18
3422 3627 5.006844 CAGATTCAGCATCATCACTCTGTTC 59.993 44.000 0.00 0.00 33.75 3.18
3423 3628 4.876679 CAGATTCAGCATCATCACTCTGTT 59.123 41.667 0.00 0.00 33.75 3.16
3424 3629 4.443621 CAGATTCAGCATCATCACTCTGT 58.556 43.478 0.00 0.00 33.75 3.41
3425 3630 3.248841 GCAGATTCAGCATCATCACTCTG 59.751 47.826 0.00 0.00 33.75 3.35
3426 3631 3.118371 TGCAGATTCAGCATCATCACTCT 60.118 43.478 0.00 0.00 37.02 3.24
3427 3632 3.203716 TGCAGATTCAGCATCATCACTC 58.796 45.455 0.00 0.00 37.02 3.51
3428 3633 3.277142 TGCAGATTCAGCATCATCACT 57.723 42.857 0.00 0.00 37.02 3.41
3911 4122 2.203877 TGGTAGGCGAACCCTGGT 60.204 61.111 9.22 0.00 45.91 4.00
4010 4224 3.809013 ATCATGTCCACCCCGGCC 61.809 66.667 0.00 0.00 33.14 6.13
4097 4311 0.389296 CGGCGTTCAGGTACATGACA 60.389 55.000 10.23 0.00 0.00 3.58
4231 4447 3.072915 TGGTGATCTTGTGAAGTGTCCAT 59.927 43.478 0.00 0.00 0.00 3.41
4234 4450 4.318332 TCATGGTGATCTTGTGAAGTGTC 58.682 43.478 0.00 0.00 0.00 3.67
4238 4454 8.464404 ACAATTATTCATGGTGATCTTGTGAAG 58.536 33.333 0.00 0.00 32.93 3.02
4239 4455 8.352137 ACAATTATTCATGGTGATCTTGTGAA 57.648 30.769 0.00 0.43 33.82 3.18
4242 4458 8.352137 TCAACAATTATTCATGGTGATCTTGT 57.648 30.769 0.00 0.00 38.30 3.16
4245 4461 9.417561 AGATTCAACAATTATTCATGGTGATCT 57.582 29.630 0.00 0.00 42.44 2.75
4249 4465 9.865321 AAGAAGATTCAACAATTATTCATGGTG 57.135 29.630 0.00 0.00 35.56 4.17
4257 4473 9.852091 GCAAGAAGAAGAAGATTCAACAATTAT 57.148 29.630 0.00 0.00 0.00 1.28
4258 4474 9.071276 AGCAAGAAGAAGAAGATTCAACAATTA 57.929 29.630 0.00 0.00 0.00 1.40
4260 4476 7.014038 ACAGCAAGAAGAAGAAGATTCAACAAT 59.986 33.333 0.00 0.00 0.00 2.71
4264 4498 6.319658 ACAACAGCAAGAAGAAGAAGATTCAA 59.680 34.615 0.00 0.00 0.00 2.69
4279 4516 2.620112 CCGCCTGGACAACAGCAAG 61.620 63.158 0.00 0.00 46.14 4.01
4415 4657 5.116180 AGTGAGTGAGTGAACGAAAATTCA 58.884 37.500 0.00 0.00 36.23 2.57
4416 4658 5.659048 AGTGAGTGAGTGAACGAAAATTC 57.341 39.130 0.00 0.00 0.00 2.17
4417 4659 7.226720 ACATAAGTGAGTGAGTGAACGAAAATT 59.773 33.333 0.00 0.00 0.00 1.82
4423 4665 4.618912 CAGACATAAGTGAGTGAGTGAACG 59.381 45.833 0.00 0.00 0.00 3.95
4424 4666 5.773575 TCAGACATAAGTGAGTGAGTGAAC 58.226 41.667 0.00 0.00 0.00 3.18
4448 4703 1.985473 TTCAGGTTGCAGAGCATTGT 58.015 45.000 0.00 0.00 38.76 2.71
4449 4704 3.057104 TGATTTCAGGTTGCAGAGCATTG 60.057 43.478 0.00 0.00 38.76 2.82
4452 4707 2.275134 TGATTTCAGGTTGCAGAGCA 57.725 45.000 0.00 0.00 36.47 4.26
4453 4708 3.648339 TTTGATTTCAGGTTGCAGAGC 57.352 42.857 0.00 0.00 0.00 4.09
4516 4785 2.596338 TCTCGTCGACCACCTGCA 60.596 61.111 10.58 0.00 0.00 4.41
4591 4862 1.515519 GAGCGCATACCGTTGACGA 60.516 57.895 11.47 0.00 43.02 4.20
4601 4872 7.227711 GGATTGATCTATAGAGTAGAGCGCATA 59.772 40.741 11.47 0.00 33.06 3.14
4602 4873 6.039270 GGATTGATCTATAGAGTAGAGCGCAT 59.961 42.308 11.47 0.00 33.06 4.73
4668 4943 6.075762 TCAGTCAACCATGAAACTCAAATG 57.924 37.500 0.00 0.00 37.30 2.32
4685 4963 3.574396 CAGGTTACAGAGAGGTTCAGTCA 59.426 47.826 0.00 0.00 0.00 3.41
4840 5118 4.514441 AGAAGTTGAGTGCTGAAGAATGTG 59.486 41.667 0.00 0.00 0.00 3.21
4957 5239 4.735132 CTCGTGCCGAGCCCGAAA 62.735 66.667 10.89 0.00 46.75 3.46
5005 5287 3.360867 GTGGAGGAAGACAGAGATCTCA 58.639 50.000 24.39 0.00 0.00 3.27
5041 5323 4.323562 GGTGGTCTGGAAGCTTACTTGTAT 60.324 45.833 10.74 0.00 35.82 2.29
5059 5341 1.202770 GGAGCAGTTAACTGTGGTGGT 60.203 52.381 30.90 15.35 45.45 4.16
5100 5396 1.095228 CAGTCACCGTTGGTTGCAGT 61.095 55.000 0.00 0.00 31.02 4.40
5122 5418 9.265938 CATTCAGATACAAAGTCAATGTTAACG 57.734 33.333 0.26 0.00 32.27 3.18
5215 5545 1.304381 GGTGATCTTGGCCAGGCAA 60.304 57.895 15.19 10.46 0.00 4.52
5318 5648 7.581213 TTTATTTGTCTGGACACATGAGTTT 57.419 32.000 11.27 0.00 41.67 2.66
5353 5683 2.464459 GCAGCAATAACGCCTCGCT 61.464 57.895 0.00 0.00 0.00 4.93
5360 5690 2.931969 TGACTCATCTGCAGCAATAACG 59.068 45.455 9.47 0.00 0.00 3.18
5364 5694 3.418995 ACTTTGACTCATCTGCAGCAAT 58.581 40.909 9.47 0.00 0.00 3.56
5369 5699 1.532437 CGCAACTTTGACTCATCTGCA 59.468 47.619 0.00 0.00 0.00 4.41
5466 5797 1.017177 TCGGCGGCAACACTATTGAC 61.017 55.000 10.53 0.00 0.00 3.18
5467 5798 0.320858 TTCGGCGGCAACACTATTGA 60.321 50.000 10.53 0.00 0.00 2.57
5468 5799 0.096976 CTTCGGCGGCAACACTATTG 59.903 55.000 10.53 0.00 0.00 1.90
5469 5800 0.321298 ACTTCGGCGGCAACACTATT 60.321 50.000 10.53 0.00 0.00 1.73
5470 5801 0.533491 TACTTCGGCGGCAACACTAT 59.467 50.000 10.53 0.00 0.00 2.12
5471 5802 0.317799 TTACTTCGGCGGCAACACTA 59.682 50.000 10.53 0.00 0.00 2.74
5472 5803 1.070105 TTACTTCGGCGGCAACACT 59.930 52.632 10.53 0.00 0.00 3.55
5473 5804 1.205820 GTTACTTCGGCGGCAACAC 59.794 57.895 10.53 0.00 0.00 3.32
5474 5805 0.533308 AAGTTACTTCGGCGGCAACA 60.533 50.000 10.53 0.00 0.00 3.33
5475 5806 0.110373 CAAGTTACTTCGGCGGCAAC 60.110 55.000 10.53 5.33 0.00 4.17
5476 5807 1.847890 GCAAGTTACTTCGGCGGCAA 61.848 55.000 10.53 1.56 0.00 4.52
5477 5808 2.322081 GCAAGTTACTTCGGCGGCA 61.322 57.895 10.53 0.00 0.00 5.69
5478 5809 1.644786 ATGCAAGTTACTTCGGCGGC 61.645 55.000 7.21 0.00 0.00 6.53
5479 5810 0.373716 GATGCAAGTTACTTCGGCGG 59.626 55.000 7.21 0.00 0.00 6.13
5480 5811 0.025001 CGATGCAAGTTACTTCGGCG 59.975 55.000 0.00 0.00 32.76 6.46
5481 5812 1.355971 TCGATGCAAGTTACTTCGGC 58.644 50.000 10.49 0.00 35.92 5.54
5482 5813 3.424433 GGTTTCGATGCAAGTTACTTCGG 60.424 47.826 10.49 0.00 35.92 4.30
5483 5814 3.432252 AGGTTTCGATGCAAGTTACTTCG 59.568 43.478 0.00 5.28 36.39 3.79
5484 5815 5.147162 CAAGGTTTCGATGCAAGTTACTTC 58.853 41.667 0.00 0.00 0.00 3.01
5485 5816 4.023193 CCAAGGTTTCGATGCAAGTTACTT 60.023 41.667 0.00 0.00 0.00 2.24
5486 5817 3.502211 CCAAGGTTTCGATGCAAGTTACT 59.498 43.478 0.00 0.00 0.00 2.24
5487 5818 3.365969 CCCAAGGTTTCGATGCAAGTTAC 60.366 47.826 0.00 0.00 0.00 2.50
5488 5819 2.817258 CCCAAGGTTTCGATGCAAGTTA 59.183 45.455 0.00 0.00 0.00 2.24
5489 5820 1.613437 CCCAAGGTTTCGATGCAAGTT 59.387 47.619 0.00 0.00 0.00 2.66
5490 5821 1.247567 CCCAAGGTTTCGATGCAAGT 58.752 50.000 0.00 0.00 0.00 3.16
5491 5822 1.068333 CACCCAAGGTTTCGATGCAAG 60.068 52.381 0.00 0.00 31.02 4.01
5492 5823 0.958091 CACCCAAGGTTTCGATGCAA 59.042 50.000 0.00 0.00 31.02 4.08
5493 5824 0.109532 TCACCCAAGGTTTCGATGCA 59.890 50.000 0.00 0.00 31.02 3.96
5494 5825 1.463674 ATCACCCAAGGTTTCGATGC 58.536 50.000 0.00 0.00 31.02 3.91
5495 5826 3.127548 CAGAATCACCCAAGGTTTCGATG 59.872 47.826 0.00 0.00 31.02 3.84
5496 5827 3.347216 CAGAATCACCCAAGGTTTCGAT 58.653 45.455 0.00 0.00 31.02 3.59
5497 5828 2.778299 CAGAATCACCCAAGGTTTCGA 58.222 47.619 0.00 0.00 31.02 3.71
5498 5829 1.200020 GCAGAATCACCCAAGGTTTCG 59.800 52.381 0.00 0.00 31.02 3.46
5499 5830 2.238521 TGCAGAATCACCCAAGGTTTC 58.761 47.619 0.00 0.00 31.02 2.78
5500 5831 2.380064 TGCAGAATCACCCAAGGTTT 57.620 45.000 0.00 0.00 31.02 3.27
5501 5832 2.173519 CATGCAGAATCACCCAAGGTT 58.826 47.619 0.00 0.00 31.02 3.50
5502 5833 1.843368 CATGCAGAATCACCCAAGGT 58.157 50.000 0.00 0.00 35.62 3.50
5503 5834 0.458669 GCATGCAGAATCACCCAAGG 59.541 55.000 14.21 0.00 0.00 3.61
5504 5835 0.458669 GGCATGCAGAATCACCCAAG 59.541 55.000 21.36 0.00 0.00 3.61
5505 5836 1.314534 CGGCATGCAGAATCACCCAA 61.315 55.000 21.36 0.00 0.00 4.12
5506 5837 1.750018 CGGCATGCAGAATCACCCA 60.750 57.895 21.36 0.00 0.00 4.51
5507 5838 1.442526 CTCGGCATGCAGAATCACCC 61.443 60.000 21.00 0.00 0.00 4.61
5508 5839 0.745845 ACTCGGCATGCAGAATCACC 60.746 55.000 21.00 0.00 0.00 4.02
5509 5840 0.376152 CACTCGGCATGCAGAATCAC 59.624 55.000 21.00 0.00 0.00 3.06
5510 5841 0.745486 CCACTCGGCATGCAGAATCA 60.745 55.000 21.00 0.00 0.00 2.57
5511 5842 0.745845 ACCACTCGGCATGCAGAATC 60.746 55.000 21.00 1.25 34.57 2.52
5512 5843 0.745845 GACCACTCGGCATGCAGAAT 60.746 55.000 21.00 9.16 34.57 2.40
5513 5844 1.375908 GACCACTCGGCATGCAGAA 60.376 57.895 21.00 5.97 34.57 3.02
5514 5845 2.265739 GACCACTCGGCATGCAGA 59.734 61.111 21.36 20.41 34.57 4.26
5515 5846 2.046988 TGACCACTCGGCATGCAG 60.047 61.111 21.36 16.69 34.57 4.41
5516 5847 2.358615 GTGACCACTCGGCATGCA 60.359 61.111 21.36 0.00 34.57 3.96
5517 5848 3.490759 CGTGACCACTCGGCATGC 61.491 66.667 9.90 9.90 34.57 4.06
5518 5849 3.490759 GCGTGACCACTCGGCATG 61.491 66.667 0.00 0.00 34.57 4.06
5519 5850 3.529341 TTGCGTGACCACTCGGCAT 62.529 57.895 2.91 0.00 34.57 4.40
5520 5851 4.228567 TTGCGTGACCACTCGGCA 62.229 61.111 0.00 0.00 34.57 5.69
5521 5852 2.758770 TAGTTGCGTGACCACTCGGC 62.759 60.000 0.00 0.00 34.57 5.54
5522 5853 0.108804 ATAGTTGCGTGACCACTCGG 60.109 55.000 0.00 0.00 38.77 4.63
5523 5854 1.710013 AATAGTTGCGTGACCACTCG 58.290 50.000 0.00 0.00 36.33 4.18
5524 5855 4.026804 CGAATAATAGTTGCGTGACCACTC 60.027 45.833 0.00 0.00 0.00 3.51
5525 5856 3.863424 CGAATAATAGTTGCGTGACCACT 59.137 43.478 0.00 0.00 0.00 4.00
5526 5857 3.861113 TCGAATAATAGTTGCGTGACCAC 59.139 43.478 0.00 0.00 0.00 4.16
5527 5858 4.112716 TCGAATAATAGTTGCGTGACCA 57.887 40.909 0.00 0.00 0.00 4.02
5528 5859 5.652744 AATCGAATAATAGTTGCGTGACC 57.347 39.130 0.00 0.00 0.00 4.02
5529 5860 7.838498 AGTTAATCGAATAATAGTTGCGTGAC 58.162 34.615 0.00 0.00 0.00 3.67
5530 5861 7.997107 AGTTAATCGAATAATAGTTGCGTGA 57.003 32.000 0.00 0.00 0.00 4.35
5545 5876 9.419297 GCCAACACTATTGATATAGTTAATCGA 57.581 33.333 0.00 0.00 43.48 3.59
5546 5877 8.373256 CGCCAACACTATTGATATAGTTAATCG 58.627 37.037 0.00 0.00 43.48 3.34
5547 5878 8.169268 GCGCCAACACTATTGATATAGTTAATC 58.831 37.037 0.00 0.00 43.48 1.75
5548 5879 7.119262 GGCGCCAACACTATTGATATAGTTAAT 59.881 37.037 24.80 0.00 43.48 1.40
5549 5880 6.425721 GGCGCCAACACTATTGATATAGTTAA 59.574 38.462 24.80 0.00 43.48 2.01
5550 5881 5.929992 GGCGCCAACACTATTGATATAGTTA 59.070 40.000 24.80 0.00 43.48 2.24
5551 5882 4.755123 GGCGCCAACACTATTGATATAGTT 59.245 41.667 24.80 0.00 43.48 2.24
5552 5883 4.202315 TGGCGCCAACACTATTGATATAGT 60.202 41.667 30.74 0.00 46.18 2.12
5553 5884 4.314961 TGGCGCCAACACTATTGATATAG 58.685 43.478 30.74 0.00 39.75 1.31
5554 5885 4.344359 TGGCGCCAACACTATTGATATA 57.656 40.909 30.74 0.00 0.00 0.86
5555 5886 3.207265 TGGCGCCAACACTATTGATAT 57.793 42.857 30.74 0.00 0.00 1.63
5556 5887 2.700722 TGGCGCCAACACTATTGATA 57.299 45.000 30.74 0.00 0.00 2.15
5590 5922 1.707989 TGCAGAATCACCCAGGGTTTA 59.292 47.619 9.12 0.00 31.02 2.01
5596 5928 0.681887 TGGCATGCAGAATCACCCAG 60.682 55.000 21.36 0.00 0.00 4.45
5626 5958 1.837747 CGAATAATTGTTGCGTTCGGC 59.162 47.619 0.00 0.00 38.30 5.54
5629 5961 7.948513 AGTTAATCGAATAATTGTTGCGTTC 57.051 32.000 0.00 0.00 0.00 3.95
5631 5963 9.828852 TTTTAGTTAATCGAATAATTGTTGCGT 57.171 25.926 0.00 0.00 0.00 5.24
5662 5994 8.405418 TCGCCTCTCAAGTATTTGTATAGTAT 57.595 34.615 0.00 0.00 35.73 2.12
5666 5998 6.954487 TCTCGCCTCTCAAGTATTTGTATA 57.046 37.500 0.00 0.00 35.73 1.47
5670 6002 4.509600 GGATTCTCGCCTCTCAAGTATTTG 59.490 45.833 0.00 0.00 35.57 2.32
5694 6027 4.673328 TTTCTTCCATCCTTCCATCCAA 57.327 40.909 0.00 0.00 0.00 3.53
5695 6028 4.539726 CATTTCTTCCATCCTTCCATCCA 58.460 43.478 0.00 0.00 0.00 3.41
5697 6030 4.796606 TCCATTTCTTCCATCCTTCCATC 58.203 43.478 0.00 0.00 0.00 3.51
5707 6040 4.136796 CGCAAGGATATCCATTTCTTCCA 58.863 43.478 23.81 0.00 38.89 3.53
5709 6042 4.083590 GCTCGCAAGGATATCCATTTCTTC 60.084 45.833 23.81 4.38 38.89 2.87
5712 6045 3.058639 GTGCTCGCAAGGATATCCATTTC 60.059 47.826 23.81 8.62 38.89 2.17
5723 6056 0.671472 TGACATCAGTGCTCGCAAGG 60.671 55.000 0.00 0.00 38.47 3.61
5761 6094 6.560253 TTGAAAAGTCAACTTATCAGGAGC 57.440 37.500 0.00 0.00 38.88 4.70
5775 6108 5.914635 TCTTGCAAATCGTGATTGAAAAGTC 59.085 36.000 0.00 0.00 0.00 3.01
5781 6114 4.514816 TGTTCTCTTGCAAATCGTGATTGA 59.485 37.500 0.00 0.00 0.00 2.57
5786 6119 5.916883 AGATTTTGTTCTCTTGCAAATCGTG 59.083 36.000 0.00 0.00 34.99 4.35
5879 6214 6.567050 CCTTAATAATGTTGCTGCTGATTGT 58.433 36.000 0.00 0.00 0.00 2.71
5881 6216 5.127519 TGCCTTAATAATGTTGCTGCTGATT 59.872 36.000 0.00 0.00 0.00 2.57
5888 6223 6.588719 TGACTTTGCCTTAATAATGTTGCT 57.411 33.333 0.00 0.00 0.00 3.91
5934 6269 9.522804 TGCAGATAACTATTTTGTTTTCGTTTT 57.477 25.926 0.00 0.00 34.60 2.43
5944 6280 7.111247 TCCCCATTTGCAGATAACTATTTTG 57.889 36.000 0.00 0.00 0.00 2.44
5975 6311 3.372206 GCGTCTACTTTGCACATCTCAAT 59.628 43.478 0.00 0.00 0.00 2.57
5976 6312 2.736721 GCGTCTACTTTGCACATCTCAA 59.263 45.455 0.00 0.00 0.00 3.02
6000 6337 5.351740 GTCCTAAAGACTAAAGCCATGTCAC 59.648 44.000 0.00 0.00 42.69 3.67
6005 6342 6.067217 ACATGTCCTAAAGACTAAAGCCAT 57.933 37.500 0.00 0.00 46.46 4.40
6129 6467 8.964476 AGACAAGAAATGACGGTGATTAATAT 57.036 30.769 0.00 0.00 0.00 1.28
6130 6468 8.786826 AAGACAAGAAATGACGGTGATTAATA 57.213 30.769 0.00 0.00 0.00 0.98
6153 6491 1.003233 AGCCCTAGGACGGAACAAAAG 59.997 52.381 11.48 0.00 0.00 2.27
6174 6513 7.178274 ACATAACCCAAAATTCAGCATGTTCTA 59.822 33.333 0.00 0.00 37.40 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.