Multiple sequence alignment - TraesCS7D01G024800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G024800 chr7D 100.000 3001 0 0 1 3001 11641649 11644649 0.000000e+00 5542
1 TraesCS7D01G024800 chr7D 94.565 2447 88 15 586 3001 530867456 530865024 0.000000e+00 3740
2 TraesCS7D01G024800 chr7D 93.883 2452 89 16 586 3001 596123081 596120655 0.000000e+00 3640
3 TraesCS7D01G024800 chr7D 94.654 1721 48 14 1316 3001 70680369 70678658 0.000000e+00 2628
4 TraesCS7D01G024800 chr7D 94.591 1701 66 13 586 2264 592400973 592402669 0.000000e+00 2608
5 TraesCS7D01G024800 chr7D 95.274 1185 35 7 1831 3001 498406724 498407901 0.000000e+00 1858
6 TraesCS7D01G024800 chr7D 91.017 423 11 10 2599 3001 89086646 89086231 2.030000e-151 545
7 TraesCS7D01G024800 chr7D 91.026 78 5 1 1 78 267322312 267322387 1.470000e-18 104
8 TraesCS7D01G024800 chr4D 94.818 2451 84 14 586 3001 440465454 440463012 0.000000e+00 3783
9 TraesCS7D01G024800 chr4D 95.522 67 3 0 1 67 118072771 118072705 1.140000e-19 108
10 TraesCS7D01G024800 chr7A 93.360 2455 93 19 586 3001 134461737 134464160 0.000000e+00 3567
11 TraesCS7D01G024800 chr7A 94.876 1249 36 4 1774 3001 642166678 642167919 0.000000e+00 1927
12 TraesCS7D01G024800 chr6A 93.105 2451 111 18 586 3001 508298181 508300608 0.000000e+00 3537
13 TraesCS7D01G024800 chr6A 92.324 2345 93 34 581 2898 134201695 134203979 0.000000e+00 3253
14 TraesCS7D01G024800 chr6A 81.437 167 26 5 420 585 596287952 596288114 6.750000e-27 132
15 TraesCS7D01G024800 chr6A 81.437 167 26 5 420 585 596305103 596305265 6.750000e-27 132
16 TraesCS7D01G024800 chr5A 92.974 2448 107 26 586 3001 402974416 402976830 0.000000e+00 3507
17 TraesCS7D01G024800 chr5A 92.126 2451 106 35 586 3001 562130734 562133132 0.000000e+00 3376
18 TraesCS7D01G024800 chr5A 93.607 1971 91 5 586 2534 633045665 633043708 0.000000e+00 2909
19 TraesCS7D01G024800 chr2A 93.105 2306 106 20 592 2865 514763732 514766016 0.000000e+00 3328
20 TraesCS7D01G024800 chr2A 94.305 2072 96 3 586 2636 458970802 458968732 0.000000e+00 3153
21 TraesCS7D01G024800 chr1B 91.101 2416 132 33 586 2959 591152712 591155086 0.000000e+00 3193
22 TraesCS7D01G024800 chr5D 94.167 1543 44 16 1494 3001 351321021 351322552 0.000000e+00 2309
23 TraesCS7D01G024800 chr5D 95.093 1284 40 11 586 1848 443521254 443522535 0.000000e+00 2001
24 TraesCS7D01G024800 chr5D 94.521 73 4 0 1 73 415744770 415744842 2.450000e-21 113
25 TraesCS7D01G024800 chr5D 94.286 70 4 0 1 70 60161582 60161513 1.140000e-19 108
26 TraesCS7D01G024800 chr5D 93.056 72 5 0 1 72 380970503 380970432 4.090000e-19 106
27 TraesCS7D01G024800 chr3D 96.923 65 2 0 1 65 427252483 427252419 3.160000e-20 110
28 TraesCS7D01G024800 chr2D 94.366 71 3 1 1 71 441945742 441945673 1.140000e-19 108
29 TraesCS7D01G024800 chr2D 95.522 67 2 1 1 67 125700523 125700588 4.090000e-19 106
30 TraesCS7D01G024800 chr2D 96.721 61 2 0 1 61 309277160 309277220 5.290000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G024800 chr7D 11641649 11644649 3000 False 5542 5542 100.000 1 3001 1 chr7D.!!$F1 3000
1 TraesCS7D01G024800 chr7D 530865024 530867456 2432 True 3740 3740 94.565 586 3001 1 chr7D.!!$R3 2415
2 TraesCS7D01G024800 chr7D 596120655 596123081 2426 True 3640 3640 93.883 586 3001 1 chr7D.!!$R4 2415
3 TraesCS7D01G024800 chr7D 70678658 70680369 1711 True 2628 2628 94.654 1316 3001 1 chr7D.!!$R1 1685
4 TraesCS7D01G024800 chr7D 592400973 592402669 1696 False 2608 2608 94.591 586 2264 1 chr7D.!!$F4 1678
5 TraesCS7D01G024800 chr7D 498406724 498407901 1177 False 1858 1858 95.274 1831 3001 1 chr7D.!!$F3 1170
6 TraesCS7D01G024800 chr4D 440463012 440465454 2442 True 3783 3783 94.818 586 3001 1 chr4D.!!$R2 2415
7 TraesCS7D01G024800 chr7A 134461737 134464160 2423 False 3567 3567 93.360 586 3001 1 chr7A.!!$F1 2415
8 TraesCS7D01G024800 chr7A 642166678 642167919 1241 False 1927 1927 94.876 1774 3001 1 chr7A.!!$F2 1227
9 TraesCS7D01G024800 chr6A 508298181 508300608 2427 False 3537 3537 93.105 586 3001 1 chr6A.!!$F2 2415
10 TraesCS7D01G024800 chr6A 134201695 134203979 2284 False 3253 3253 92.324 581 2898 1 chr6A.!!$F1 2317
11 TraesCS7D01G024800 chr5A 402974416 402976830 2414 False 3507 3507 92.974 586 3001 1 chr5A.!!$F1 2415
12 TraesCS7D01G024800 chr5A 562130734 562133132 2398 False 3376 3376 92.126 586 3001 1 chr5A.!!$F2 2415
13 TraesCS7D01G024800 chr5A 633043708 633045665 1957 True 2909 2909 93.607 586 2534 1 chr5A.!!$R1 1948
14 TraesCS7D01G024800 chr2A 514763732 514766016 2284 False 3328 3328 93.105 592 2865 1 chr2A.!!$F1 2273
15 TraesCS7D01G024800 chr2A 458968732 458970802 2070 True 3153 3153 94.305 586 2636 1 chr2A.!!$R1 2050
16 TraesCS7D01G024800 chr1B 591152712 591155086 2374 False 3193 3193 91.101 586 2959 1 chr1B.!!$F1 2373
17 TraesCS7D01G024800 chr5D 351321021 351322552 1531 False 2309 2309 94.167 1494 3001 1 chr5D.!!$F1 1507
18 TraesCS7D01G024800 chr5D 443521254 443522535 1281 False 2001 2001 95.093 586 1848 1 chr5D.!!$F3 1262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.108138 GTGAGCCATAGCGTTCCAGT 60.108 55.0 0.00 0.0 46.67 4.00 F
153 154 0.250640 AGAGGTGCAGCAGTTGAAGG 60.251 55.0 19.63 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 2080 5.754782 TCAATTTCCTTCTATAGCTTGCCA 58.245 37.5 0.00 0.0 0.0 4.92 R
2127 2219 5.277731 CCTCAAGTTGTTTCTTCTTCTCAGC 60.278 44.0 2.11 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.633525 TCCATAAATGCATCTTGGTGAGC 59.366 43.478 17.33 0.00 0.00 4.26
23 24 3.549423 CCATAAATGCATCTTGGTGAGCG 60.549 47.826 0.00 0.00 0.00 5.03
24 25 1.538047 AAATGCATCTTGGTGAGCGT 58.462 45.000 0.00 0.00 0.00 5.07
25 26 2.401583 AATGCATCTTGGTGAGCGTA 57.598 45.000 0.00 0.00 0.00 4.42
26 27 1.945387 ATGCATCTTGGTGAGCGTAG 58.055 50.000 0.00 0.00 0.00 3.51
27 28 0.108186 TGCATCTTGGTGAGCGTAGG 60.108 55.000 0.00 0.00 0.00 3.18
28 29 0.175760 GCATCTTGGTGAGCGTAGGA 59.824 55.000 0.00 0.00 0.00 2.94
29 30 1.405526 GCATCTTGGTGAGCGTAGGAA 60.406 52.381 0.00 0.00 0.00 3.36
30 31 2.935238 GCATCTTGGTGAGCGTAGGAAA 60.935 50.000 0.00 0.00 0.00 3.13
31 32 3.334691 CATCTTGGTGAGCGTAGGAAAA 58.665 45.455 0.00 0.00 0.00 2.29
32 33 3.695830 TCTTGGTGAGCGTAGGAAAAT 57.304 42.857 0.00 0.00 0.00 1.82
33 34 4.015872 TCTTGGTGAGCGTAGGAAAATT 57.984 40.909 0.00 0.00 0.00 1.82
34 35 4.394729 TCTTGGTGAGCGTAGGAAAATTT 58.605 39.130 0.00 0.00 0.00 1.82
35 36 4.825085 TCTTGGTGAGCGTAGGAAAATTTT 59.175 37.500 2.28 2.28 0.00 1.82
36 37 5.998981 TCTTGGTGAGCGTAGGAAAATTTTA 59.001 36.000 2.75 0.00 0.00 1.52
37 38 6.487331 TCTTGGTGAGCGTAGGAAAATTTTAA 59.513 34.615 2.75 0.00 0.00 1.52
38 39 6.636562 TGGTGAGCGTAGGAAAATTTTAAA 57.363 33.333 2.75 0.00 0.00 1.52
39 40 7.040473 TGGTGAGCGTAGGAAAATTTTAAAA 57.960 32.000 2.75 2.51 0.00 1.52
40 41 7.662897 TGGTGAGCGTAGGAAAATTTTAAAAT 58.337 30.769 7.64 7.64 0.00 1.82
41 42 8.145122 TGGTGAGCGTAGGAAAATTTTAAAATT 58.855 29.630 18.40 18.40 40.15 1.82
42 43 9.628746 GGTGAGCGTAGGAAAATTTTAAAATTA 57.371 29.630 23.01 7.61 37.62 1.40
46 47 9.869757 AGCGTAGGAAAATTTTAAAATTATGCT 57.130 25.926 23.01 22.85 37.62 3.79
59 60 9.616156 TTTAAAATTATGCTACGATTCCCTACA 57.384 29.630 0.00 0.00 0.00 2.74
60 61 7.730364 AAAATTATGCTACGATTCCCTACAG 57.270 36.000 0.00 0.00 0.00 2.74
61 62 6.665992 AATTATGCTACGATTCCCTACAGA 57.334 37.500 0.00 0.00 0.00 3.41
62 63 6.665992 ATTATGCTACGATTCCCTACAGAA 57.334 37.500 0.00 0.00 0.00 3.02
63 64 6.474140 TTATGCTACGATTCCCTACAGAAA 57.526 37.500 0.00 0.00 0.00 2.52
64 65 4.811969 TGCTACGATTCCCTACAGAAAA 57.188 40.909 0.00 0.00 0.00 2.29
65 66 5.155278 TGCTACGATTCCCTACAGAAAAA 57.845 39.130 0.00 0.00 0.00 1.94
66 67 5.741011 TGCTACGATTCCCTACAGAAAAAT 58.259 37.500 0.00 0.00 0.00 1.82
67 68 6.177610 TGCTACGATTCCCTACAGAAAAATT 58.822 36.000 0.00 0.00 0.00 1.82
68 69 6.093495 TGCTACGATTCCCTACAGAAAAATTG 59.907 38.462 0.00 0.00 0.00 2.32
69 70 6.093633 GCTACGATTCCCTACAGAAAAATTGT 59.906 38.462 0.00 0.00 0.00 2.71
70 71 6.496338 ACGATTCCCTACAGAAAAATTGTC 57.504 37.500 0.00 0.00 0.00 3.18
71 72 5.121768 ACGATTCCCTACAGAAAAATTGTCG 59.878 40.000 0.00 0.00 30.85 4.35
72 73 5.350365 CGATTCCCTACAGAAAAATTGTCGA 59.650 40.000 0.00 0.00 0.00 4.20
73 74 5.934935 TTCCCTACAGAAAAATTGTCGAC 57.065 39.130 9.11 9.11 0.00 4.20
74 75 3.991773 TCCCTACAGAAAAATTGTCGACG 59.008 43.478 11.62 0.00 0.00 5.12
75 76 3.424433 CCCTACAGAAAAATTGTCGACGC 60.424 47.826 11.62 0.00 0.00 5.19
76 77 3.432252 CCTACAGAAAAATTGTCGACGCT 59.568 43.478 11.62 0.00 0.00 5.07
77 78 3.521524 ACAGAAAAATTGTCGACGCTC 57.478 42.857 11.62 1.03 0.00 5.03
78 79 2.096909 ACAGAAAAATTGTCGACGCTCG 60.097 45.455 11.62 1.67 42.10 5.03
79 80 2.096909 CAGAAAAATTGTCGACGCTCGT 60.097 45.455 11.62 0.00 41.35 4.18
80 81 3.120616 CAGAAAAATTGTCGACGCTCGTA 59.879 43.478 11.62 0.00 41.35 3.43
81 82 3.364023 AGAAAAATTGTCGACGCTCGTAG 59.636 43.478 11.62 0.00 41.35 3.51
82 83 2.624316 AAATTGTCGACGCTCGTAGA 57.376 45.000 11.62 1.25 41.35 2.59
96 97 3.272574 TCGTAGAGTTATCTGTCGGGT 57.727 47.619 0.00 0.00 36.96 5.28
97 98 2.941064 TCGTAGAGTTATCTGTCGGGTG 59.059 50.000 0.00 0.00 36.96 4.61
98 99 2.941064 CGTAGAGTTATCTGTCGGGTGA 59.059 50.000 0.00 0.00 36.96 4.02
99 100 3.002451 CGTAGAGTTATCTGTCGGGTGAG 59.998 52.174 0.00 0.00 36.96 3.51
100 101 1.751924 AGAGTTATCTGTCGGGTGAGC 59.248 52.381 0.00 0.00 33.30 4.26
101 102 0.824759 AGTTATCTGTCGGGTGAGCC 59.175 55.000 0.00 0.00 0.00 4.70
102 103 0.535335 GTTATCTGTCGGGTGAGCCA 59.465 55.000 0.08 0.00 36.17 4.75
103 104 1.139058 GTTATCTGTCGGGTGAGCCAT 59.861 52.381 0.08 0.00 36.17 4.40
104 105 2.364324 GTTATCTGTCGGGTGAGCCATA 59.636 50.000 0.08 0.00 36.17 2.74
105 106 1.043816 ATCTGTCGGGTGAGCCATAG 58.956 55.000 0.08 0.00 36.17 2.23
106 107 1.227380 CTGTCGGGTGAGCCATAGC 60.227 63.158 0.08 0.00 40.32 2.97
107 108 2.279517 GTCGGGTGAGCCATAGCG 60.280 66.667 0.08 0.00 46.67 4.26
108 109 2.758327 TCGGGTGAGCCATAGCGT 60.758 61.111 0.08 0.00 46.67 5.07
109 110 2.186903 CGGGTGAGCCATAGCGTT 59.813 61.111 0.08 0.00 46.67 4.84
110 111 1.883084 CGGGTGAGCCATAGCGTTC 60.883 63.158 0.08 0.00 46.67 3.95
111 112 1.523938 GGGTGAGCCATAGCGTTCC 60.524 63.158 0.00 0.00 46.67 3.62
112 113 1.220749 GGTGAGCCATAGCGTTCCA 59.779 57.895 0.00 0.00 46.67 3.53
113 114 0.811616 GGTGAGCCATAGCGTTCCAG 60.812 60.000 0.00 0.00 46.67 3.86
114 115 0.108138 GTGAGCCATAGCGTTCCAGT 60.108 55.000 0.00 0.00 46.67 4.00
115 116 0.613260 TGAGCCATAGCGTTCCAGTT 59.387 50.000 0.00 0.00 46.67 3.16
116 117 1.009829 GAGCCATAGCGTTCCAGTTG 58.990 55.000 0.00 0.00 46.67 3.16
117 118 0.324943 AGCCATAGCGTTCCAGTTGT 59.675 50.000 0.00 0.00 46.67 3.32
118 119 1.165270 GCCATAGCGTTCCAGTTGTT 58.835 50.000 0.00 0.00 0.00 2.83
119 120 2.027561 AGCCATAGCGTTCCAGTTGTTA 60.028 45.455 0.00 0.00 46.67 2.41
120 121 2.943033 GCCATAGCGTTCCAGTTGTTAT 59.057 45.455 0.00 0.00 0.00 1.89
121 122 3.377172 GCCATAGCGTTCCAGTTGTTATT 59.623 43.478 0.00 0.00 0.00 1.40
122 123 4.730613 GCCATAGCGTTCCAGTTGTTATTG 60.731 45.833 0.00 0.00 0.00 1.90
123 124 4.201910 CCATAGCGTTCCAGTTGTTATTGG 60.202 45.833 0.00 0.00 35.74 3.16
124 125 2.858745 AGCGTTCCAGTTGTTATTGGT 58.141 42.857 0.00 0.00 35.89 3.67
125 126 4.010667 AGCGTTCCAGTTGTTATTGGTA 57.989 40.909 0.00 0.00 35.89 3.25
126 127 4.000988 AGCGTTCCAGTTGTTATTGGTAG 58.999 43.478 0.00 0.00 35.89 3.18
127 128 3.126343 GCGTTCCAGTTGTTATTGGTAGG 59.874 47.826 0.00 0.00 35.89 3.18
128 129 4.320870 CGTTCCAGTTGTTATTGGTAGGT 58.679 43.478 0.00 0.00 35.89 3.08
129 130 4.390909 CGTTCCAGTTGTTATTGGTAGGTC 59.609 45.833 0.00 0.00 35.89 3.85
130 131 5.310451 GTTCCAGTTGTTATTGGTAGGTCA 58.690 41.667 0.00 0.00 35.89 4.02
131 132 5.570205 TCCAGTTGTTATTGGTAGGTCAA 57.430 39.130 0.00 0.00 35.89 3.18
132 133 6.134535 TCCAGTTGTTATTGGTAGGTCAAT 57.865 37.500 0.00 0.00 40.15 2.57
133 134 7.260387 TCCAGTTGTTATTGGTAGGTCAATA 57.740 36.000 0.00 0.00 38.24 1.90
134 135 7.691213 TCCAGTTGTTATTGGTAGGTCAATAA 58.309 34.615 6.08 6.08 43.30 1.40
135 136 7.827236 TCCAGTTGTTATTGGTAGGTCAATAAG 59.173 37.037 9.44 0.70 44.96 1.73
136 137 7.827236 CCAGTTGTTATTGGTAGGTCAATAAGA 59.173 37.037 9.44 6.66 44.96 2.10
137 138 8.883731 CAGTTGTTATTGGTAGGTCAATAAGAG 58.116 37.037 9.44 0.00 44.96 2.85
138 139 8.047310 AGTTGTTATTGGTAGGTCAATAAGAGG 58.953 37.037 9.44 0.00 44.96 3.69
139 140 7.504926 TGTTATTGGTAGGTCAATAAGAGGT 57.495 36.000 9.44 0.00 44.96 3.85
140 141 7.335627 TGTTATTGGTAGGTCAATAAGAGGTG 58.664 38.462 9.44 0.00 44.96 4.00
141 142 3.906720 TGGTAGGTCAATAAGAGGTGC 57.093 47.619 0.00 0.00 0.00 5.01
142 143 3.178046 TGGTAGGTCAATAAGAGGTGCA 58.822 45.455 0.00 0.00 0.00 4.57
143 144 3.197766 TGGTAGGTCAATAAGAGGTGCAG 59.802 47.826 0.00 0.00 0.00 4.41
144 145 2.409948 AGGTCAATAAGAGGTGCAGC 57.590 50.000 8.11 8.11 0.00 5.25
145 146 1.630369 AGGTCAATAAGAGGTGCAGCA 59.370 47.619 19.63 0.00 0.00 4.41
146 147 2.012673 GGTCAATAAGAGGTGCAGCAG 58.987 52.381 19.63 0.00 0.00 4.24
147 148 2.616510 GGTCAATAAGAGGTGCAGCAGT 60.617 50.000 19.63 4.94 0.00 4.40
148 149 3.077359 GTCAATAAGAGGTGCAGCAGTT 58.923 45.455 19.63 12.88 0.00 3.16
149 150 3.076621 TCAATAAGAGGTGCAGCAGTTG 58.923 45.455 19.63 13.94 0.00 3.16
150 151 3.076621 CAATAAGAGGTGCAGCAGTTGA 58.923 45.455 19.63 0.00 0.00 3.18
151 152 2.928801 TAAGAGGTGCAGCAGTTGAA 57.071 45.000 19.63 0.00 0.00 2.69
152 153 1.602311 AAGAGGTGCAGCAGTTGAAG 58.398 50.000 19.63 0.00 0.00 3.02
153 154 0.250640 AGAGGTGCAGCAGTTGAAGG 60.251 55.000 19.63 0.00 0.00 3.46
154 155 1.228367 AGGTGCAGCAGTTGAAGGG 60.228 57.895 19.63 0.00 0.00 3.95
155 156 1.529244 GGTGCAGCAGTTGAAGGGT 60.529 57.895 11.86 0.00 0.00 4.34
156 157 1.109323 GGTGCAGCAGTTGAAGGGTT 61.109 55.000 11.86 0.00 0.00 4.11
157 158 0.746659 GTGCAGCAGTTGAAGGGTTT 59.253 50.000 0.00 0.00 0.00 3.27
158 159 1.032014 TGCAGCAGTTGAAGGGTTTC 58.968 50.000 0.00 0.00 0.00 2.78
159 160 1.322442 GCAGCAGTTGAAGGGTTTCT 58.678 50.000 0.00 0.00 34.31 2.52
160 161 1.000938 GCAGCAGTTGAAGGGTTTCTG 60.001 52.381 0.00 0.00 34.31 3.02
161 162 2.575532 CAGCAGTTGAAGGGTTTCTGA 58.424 47.619 0.00 0.00 34.31 3.27
162 163 2.951642 CAGCAGTTGAAGGGTTTCTGAA 59.048 45.455 0.00 0.00 34.31 3.02
163 164 3.381272 CAGCAGTTGAAGGGTTTCTGAAA 59.619 43.478 0.00 0.00 34.31 2.69
164 165 3.381590 AGCAGTTGAAGGGTTTCTGAAAC 59.618 43.478 21.92 21.92 40.65 2.78
165 166 3.130340 GCAGTTGAAGGGTTTCTGAAACA 59.870 43.478 28.53 10.23 43.15 2.83
166 167 4.381505 GCAGTTGAAGGGTTTCTGAAACAA 60.382 41.667 28.53 14.88 43.15 2.83
167 168 5.682212 GCAGTTGAAGGGTTTCTGAAACAAT 60.682 40.000 28.53 16.66 43.15 2.71
168 169 5.750067 CAGTTGAAGGGTTTCTGAAACAATG 59.250 40.000 28.53 15.68 43.15 2.82
169 170 5.656416 AGTTGAAGGGTTTCTGAAACAATGA 59.344 36.000 28.53 10.36 43.15 2.57
170 171 6.154363 AGTTGAAGGGTTTCTGAAACAATGAA 59.846 34.615 28.53 14.70 43.15 2.57
171 172 6.537453 TGAAGGGTTTCTGAAACAATGAAA 57.463 33.333 28.53 11.19 43.15 2.69
172 173 6.337356 TGAAGGGTTTCTGAAACAATGAAAC 58.663 36.000 28.53 13.22 44.94 2.78
177 178 6.438327 GTTTCTGAAACAATGAAACCGATG 57.562 37.500 24.32 0.00 41.88 3.84
178 179 4.764679 TCTGAAACAATGAAACCGATGG 57.235 40.909 0.00 0.00 0.00 3.51
179 180 4.393834 TCTGAAACAATGAAACCGATGGA 58.606 39.130 0.00 0.00 0.00 3.41
180 181 4.824537 TCTGAAACAATGAAACCGATGGAA 59.175 37.500 0.00 0.00 0.00 3.53
181 182 5.300539 TCTGAAACAATGAAACCGATGGAAA 59.699 36.000 0.00 0.00 0.00 3.13
182 183 5.907207 TGAAACAATGAAACCGATGGAAAA 58.093 33.333 0.00 0.00 0.00 2.29
183 184 5.751028 TGAAACAATGAAACCGATGGAAAAC 59.249 36.000 0.00 0.00 0.00 2.43
184 185 4.251543 ACAATGAAACCGATGGAAAACC 57.748 40.909 0.00 0.00 0.00 3.27
185 186 3.639094 ACAATGAAACCGATGGAAAACCA 59.361 39.130 0.00 0.00 0.00 3.67
186 187 4.236935 CAATGAAACCGATGGAAAACCAG 58.763 43.478 0.00 0.00 0.00 4.00
187 188 3.216187 TGAAACCGATGGAAAACCAGA 57.784 42.857 0.00 0.00 0.00 3.86
188 189 3.146066 TGAAACCGATGGAAAACCAGAG 58.854 45.455 0.00 0.00 0.00 3.35
189 190 3.181449 TGAAACCGATGGAAAACCAGAGA 60.181 43.478 0.00 0.00 0.00 3.10
190 191 3.721087 AACCGATGGAAAACCAGAGAT 57.279 42.857 0.00 0.00 0.00 2.75
191 192 4.837093 AACCGATGGAAAACCAGAGATA 57.163 40.909 0.00 0.00 0.00 1.98
192 193 5.373812 AACCGATGGAAAACCAGAGATAT 57.626 39.130 0.00 0.00 0.00 1.63
193 194 4.708177 ACCGATGGAAAACCAGAGATATG 58.292 43.478 0.00 0.00 0.00 1.78
194 195 4.164221 ACCGATGGAAAACCAGAGATATGT 59.836 41.667 0.00 0.00 0.00 2.29
195 196 5.126067 CCGATGGAAAACCAGAGATATGTT 58.874 41.667 0.00 0.00 0.00 2.71
196 197 5.008019 CCGATGGAAAACCAGAGATATGTTG 59.992 44.000 0.00 0.00 0.00 3.33
197 198 5.008019 CGATGGAAAACCAGAGATATGTTGG 59.992 44.000 0.00 0.00 37.98 3.77
198 199 5.255397 TGGAAAACCAGAGATATGTTGGT 57.745 39.130 0.00 2.27 46.78 3.67
199 200 6.381498 TGGAAAACCAGAGATATGTTGGTA 57.619 37.500 7.00 0.00 44.15 3.25
200 201 6.785076 TGGAAAACCAGAGATATGTTGGTAA 58.215 36.000 7.00 0.00 44.15 2.85
201 202 7.235079 TGGAAAACCAGAGATATGTTGGTAAA 58.765 34.615 7.00 0.00 44.15 2.01
202 203 7.726291 TGGAAAACCAGAGATATGTTGGTAAAA 59.274 33.333 7.00 0.00 44.15 1.52
203 204 8.581578 GGAAAACCAGAGATATGTTGGTAAAAA 58.418 33.333 7.00 0.00 44.15 1.94
227 228 8.956446 AAATCAAAATAGGAAAAGAGAAGGGA 57.044 30.769 0.00 0.00 0.00 4.20
228 229 8.956446 AATCAAAATAGGAAAAGAGAAGGGAA 57.044 30.769 0.00 0.00 0.00 3.97
229 230 9.552695 AATCAAAATAGGAAAAGAGAAGGGAAT 57.447 29.630 0.00 0.00 0.00 3.01
230 231 8.956446 TCAAAATAGGAAAAGAGAAGGGAATT 57.044 30.769 0.00 0.00 0.00 2.17
231 232 8.806146 TCAAAATAGGAAAAGAGAAGGGAATTG 58.194 33.333 0.00 0.00 0.00 2.32
232 233 8.588472 CAAAATAGGAAAAGAGAAGGGAATTGT 58.412 33.333 0.00 0.00 0.00 2.71
233 234 9.822727 AAAATAGGAAAAGAGAAGGGAATTGTA 57.177 29.630 0.00 0.00 0.00 2.41
234 235 8.809468 AATAGGAAAAGAGAAGGGAATTGTAC 57.191 34.615 0.00 0.00 0.00 2.90
235 236 6.200878 AGGAAAAGAGAAGGGAATTGTACA 57.799 37.500 0.00 0.00 0.00 2.90
236 237 6.794534 AGGAAAAGAGAAGGGAATTGTACAT 58.205 36.000 0.00 0.00 0.00 2.29
237 238 7.928873 AGGAAAAGAGAAGGGAATTGTACATA 58.071 34.615 0.00 0.00 0.00 2.29
238 239 8.560903 AGGAAAAGAGAAGGGAATTGTACATAT 58.439 33.333 0.00 0.00 0.00 1.78
239 240 9.190317 GGAAAAGAGAAGGGAATTGTACATATT 57.810 33.333 0.00 0.00 0.00 1.28
243 244 9.799106 AAGAGAAGGGAATTGTACATATTATGG 57.201 33.333 8.48 0.00 33.60 2.74
244 245 8.949421 AGAGAAGGGAATTGTACATATTATGGT 58.051 33.333 8.48 0.00 33.60 3.55
245 246 9.220767 GAGAAGGGAATTGTACATATTATGGTC 57.779 37.037 8.48 1.96 33.60 4.02
246 247 7.878127 AGAAGGGAATTGTACATATTATGGTCG 59.122 37.037 8.48 0.00 33.60 4.79
247 248 6.472887 AGGGAATTGTACATATTATGGTCGG 58.527 40.000 8.48 0.00 33.60 4.79
248 249 6.271391 AGGGAATTGTACATATTATGGTCGGA 59.729 38.462 8.48 0.00 33.60 4.55
249 250 6.370718 GGGAATTGTACATATTATGGTCGGAC 59.629 42.308 8.48 0.00 33.60 4.79
250 251 6.090358 GGAATTGTACATATTATGGTCGGACG 59.910 42.308 8.48 0.00 33.60 4.79
251 252 5.771153 TTGTACATATTATGGTCGGACGA 57.229 39.130 8.48 0.00 33.60 4.20
252 253 5.366829 TGTACATATTATGGTCGGACGAG 57.633 43.478 8.48 0.00 33.60 4.18
253 254 3.299340 ACATATTATGGTCGGACGAGC 57.701 47.619 16.09 16.09 42.37 5.03
254 255 2.251040 CATATTATGGTCGGACGAGCG 58.749 52.381 17.46 0.00 44.68 5.03
255 256 0.594602 TATTATGGTCGGACGAGCGG 59.405 55.000 17.46 0.00 44.68 5.52
256 257 1.105167 ATTATGGTCGGACGAGCGGA 61.105 55.000 17.46 6.47 44.68 5.54
257 258 1.996786 TTATGGTCGGACGAGCGGAC 61.997 60.000 17.46 10.52 44.68 4.79
260 261 3.823330 GTCGGACGAGCGGACCAT 61.823 66.667 0.00 0.00 40.01 3.55
261 262 3.822192 TCGGACGAGCGGACCATG 61.822 66.667 0.00 0.00 0.00 3.66
262 263 4.873129 CGGACGAGCGGACCATGG 62.873 72.222 11.19 11.19 0.00 3.66
263 264 3.458163 GGACGAGCGGACCATGGA 61.458 66.667 21.47 0.00 0.00 3.41
264 265 2.577059 GACGAGCGGACCATGGAA 59.423 61.111 21.47 0.00 0.00 3.53
265 266 1.079405 GACGAGCGGACCATGGAAA 60.079 57.895 21.47 0.00 0.00 3.13
266 267 1.359459 GACGAGCGGACCATGGAAAC 61.359 60.000 21.47 9.21 0.00 2.78
267 268 1.079127 CGAGCGGACCATGGAAACT 60.079 57.895 21.47 9.92 0.00 2.66
268 269 0.673644 CGAGCGGACCATGGAAACTT 60.674 55.000 21.47 0.00 0.00 2.66
269 270 1.404986 CGAGCGGACCATGGAAACTTA 60.405 52.381 21.47 0.00 0.00 2.24
270 271 2.007608 GAGCGGACCATGGAAACTTAC 58.992 52.381 21.47 0.00 0.00 2.34
271 272 0.725117 GCGGACCATGGAAACTTACG 59.275 55.000 21.47 9.40 0.00 3.18
272 273 1.673626 GCGGACCATGGAAACTTACGA 60.674 52.381 21.47 0.00 0.00 3.43
273 274 1.997606 CGGACCATGGAAACTTACGAC 59.002 52.381 21.47 0.00 0.00 4.34
274 275 2.610976 CGGACCATGGAAACTTACGACA 60.611 50.000 21.47 0.00 0.00 4.35
275 276 3.606687 GGACCATGGAAACTTACGACAT 58.393 45.455 21.47 0.00 0.00 3.06
276 277 4.007659 GGACCATGGAAACTTACGACATT 58.992 43.478 21.47 0.00 0.00 2.71
277 278 4.457949 GGACCATGGAAACTTACGACATTT 59.542 41.667 21.47 0.00 0.00 2.32
278 279 5.048294 GGACCATGGAAACTTACGACATTTT 60.048 40.000 21.47 0.00 0.00 1.82
279 280 6.399639 ACCATGGAAACTTACGACATTTTT 57.600 33.333 21.47 0.00 0.00 1.94
280 281 7.308710 GGACCATGGAAACTTACGACATTTTTA 60.309 37.037 21.47 0.00 0.00 1.52
281 282 7.942990 ACCATGGAAACTTACGACATTTTTAA 58.057 30.769 21.47 0.00 0.00 1.52
282 283 8.414778 ACCATGGAAACTTACGACATTTTTAAA 58.585 29.630 21.47 0.00 0.00 1.52
283 284 9.418045 CCATGGAAACTTACGACATTTTTAAAT 57.582 29.630 5.56 0.00 0.00 1.40
295 296 9.720769 ACGACATTTTTAAATAAGGAGAGAGAA 57.279 29.630 0.00 0.00 0.00 2.87
304 305 9.983024 TTAAATAAGGAGAGAGAAGAGAAGAGA 57.017 33.333 0.00 0.00 0.00 3.10
306 307 9.492730 AAATAAGGAGAGAGAAGAGAAGAGATT 57.507 33.333 0.00 0.00 0.00 2.40
310 311 9.492730 AAGGAGAGAGAAGAGAAGAGATTATTT 57.507 33.333 0.00 0.00 0.00 1.40
311 312 8.917088 AGGAGAGAGAAGAGAAGAGATTATTTG 58.083 37.037 0.00 0.00 0.00 2.32
312 313 8.143835 GGAGAGAGAAGAGAAGAGATTATTTGG 58.856 40.741 0.00 0.00 0.00 3.28
313 314 7.500141 AGAGAGAAGAGAAGAGATTATTTGGC 58.500 38.462 0.00 0.00 0.00 4.52
314 315 6.279882 AGAGAAGAGAAGAGATTATTTGGCG 58.720 40.000 0.00 0.00 0.00 5.69
315 316 5.363939 AGAAGAGAAGAGATTATTTGGCGG 58.636 41.667 0.00 0.00 0.00 6.13
316 317 5.129485 AGAAGAGAAGAGATTATTTGGCGGA 59.871 40.000 0.00 0.00 0.00 5.54
317 318 5.359194 AGAGAAGAGATTATTTGGCGGAA 57.641 39.130 0.00 0.00 0.00 4.30
318 319 5.745227 AGAGAAGAGATTATTTGGCGGAAA 58.255 37.500 0.00 0.00 0.00 3.13
319 320 6.360618 AGAGAAGAGATTATTTGGCGGAAAT 58.639 36.000 0.00 0.00 37.96 2.17
320 321 7.509546 AGAGAAGAGATTATTTGGCGGAAATA 58.490 34.615 0.00 0.00 35.74 1.40
321 322 7.442666 AGAGAAGAGATTATTTGGCGGAAATAC 59.557 37.037 0.28 0.00 36.44 1.89
322 323 7.054124 AGAAGAGATTATTTGGCGGAAATACA 58.946 34.615 0.28 0.00 36.44 2.29
323 324 7.556275 AGAAGAGATTATTTGGCGGAAATACAA 59.444 33.333 0.28 0.00 36.44 2.41
324 325 7.823745 AGAGATTATTTGGCGGAAATACAAT 57.176 32.000 0.28 0.00 36.44 2.71
325 326 8.237811 AGAGATTATTTGGCGGAAATACAATT 57.762 30.769 0.28 0.00 36.44 2.32
326 327 8.137437 AGAGATTATTTGGCGGAAATACAATTG 58.863 33.333 3.24 3.24 36.44 2.32
327 328 7.209475 AGATTATTTGGCGGAAATACAATTGG 58.791 34.615 10.83 0.00 36.44 3.16
328 329 4.817318 ATTTGGCGGAAATACAATTGGT 57.183 36.364 10.83 0.00 32.10 3.67
329 330 3.584406 TTGGCGGAAATACAATTGGTG 57.416 42.857 10.83 0.00 0.00 4.17
330 331 2.520069 TGGCGGAAATACAATTGGTGT 58.480 42.857 10.83 0.00 44.82 4.16
331 332 2.894126 TGGCGGAAATACAATTGGTGTT 59.106 40.909 10.83 0.00 41.98 3.32
332 333 3.249917 GGCGGAAATACAATTGGTGTTG 58.750 45.455 10.83 0.00 41.98 3.33
333 334 3.305744 GGCGGAAATACAATTGGTGTTGT 60.306 43.478 10.83 0.00 44.09 3.32
334 335 4.303282 GCGGAAATACAATTGGTGTTGTT 58.697 39.130 10.83 0.00 42.08 2.83
335 336 4.384547 GCGGAAATACAATTGGTGTTGTTC 59.615 41.667 10.83 4.55 42.08 3.18
336 337 5.768317 CGGAAATACAATTGGTGTTGTTCT 58.232 37.500 10.83 0.00 42.08 3.01
337 338 6.212955 CGGAAATACAATTGGTGTTGTTCTT 58.787 36.000 10.83 0.00 42.08 2.52
338 339 6.362283 CGGAAATACAATTGGTGTTGTTCTTC 59.638 38.462 10.83 2.43 42.08 2.87
339 340 7.433680 GGAAATACAATTGGTGTTGTTCTTCT 58.566 34.615 10.83 0.00 42.08 2.85
340 341 8.573035 GGAAATACAATTGGTGTTGTTCTTCTA 58.427 33.333 10.83 0.00 42.08 2.10
364 365 9.605275 CTATATATGTATCATGTTCCAAGGTGG 57.395 37.037 0.00 0.00 39.43 4.61
365 366 4.860802 ATGTATCATGTTCCAAGGTGGA 57.139 40.909 0.00 0.00 46.61 4.02
376 377 4.111255 TCCAAGGTGGACAATTTGATCA 57.889 40.909 2.79 0.00 42.67 2.92
377 378 3.826157 TCCAAGGTGGACAATTTGATCAC 59.174 43.478 2.79 10.13 42.67 3.06
378 379 3.828451 CCAAGGTGGACAATTTGATCACT 59.172 43.478 18.47 8.54 40.96 3.41
379 380 5.009631 CCAAGGTGGACAATTTGATCACTA 58.990 41.667 18.47 0.00 40.96 2.74
380 381 5.106157 CCAAGGTGGACAATTTGATCACTAC 60.106 44.000 18.47 0.00 40.96 2.73
381 382 5.241403 AGGTGGACAATTTGATCACTACA 57.759 39.130 18.47 0.00 0.00 2.74
382 383 5.003804 AGGTGGACAATTTGATCACTACAC 58.996 41.667 18.47 8.14 0.00 2.90
383 384 5.003804 GGTGGACAATTTGATCACTACACT 58.996 41.667 18.47 0.00 0.00 3.55
384 385 5.106555 GGTGGACAATTTGATCACTACACTG 60.107 44.000 18.47 0.00 0.00 3.66
385 386 5.470098 GTGGACAATTTGATCACTACACTGT 59.530 40.000 2.79 0.00 0.00 3.55
386 387 5.700832 TGGACAATTTGATCACTACACTGTC 59.299 40.000 2.79 3.23 0.00 3.51
387 388 5.122396 GGACAATTTGATCACTACACTGTCC 59.878 44.000 16.55 16.55 34.97 4.02
388 389 5.869579 ACAATTTGATCACTACACTGTCCT 58.130 37.500 2.79 0.00 0.00 3.85
389 390 7.004555 ACAATTTGATCACTACACTGTCCTA 57.995 36.000 2.79 0.00 0.00 2.94
390 391 7.450074 ACAATTTGATCACTACACTGTCCTAA 58.550 34.615 2.79 0.00 0.00 2.69
391 392 7.936847 ACAATTTGATCACTACACTGTCCTAAA 59.063 33.333 2.79 0.00 0.00 1.85
392 393 8.783093 CAATTTGATCACTACACTGTCCTAAAA 58.217 33.333 0.00 0.00 0.00 1.52
393 394 7.724305 TTTGATCACTACACTGTCCTAAAAC 57.276 36.000 0.00 0.00 0.00 2.43
394 395 6.413783 TGATCACTACACTGTCCTAAAACA 57.586 37.500 0.00 0.00 0.00 2.83
395 396 6.822442 TGATCACTACACTGTCCTAAAACAA 58.178 36.000 0.00 0.00 0.00 2.83
396 397 6.929049 TGATCACTACACTGTCCTAAAACAAG 59.071 38.462 0.00 0.00 0.00 3.16
397 398 6.229936 TCACTACACTGTCCTAAAACAAGT 57.770 37.500 0.00 0.00 0.00 3.16
398 399 6.046593 TCACTACACTGTCCTAAAACAAGTG 58.953 40.000 0.00 0.00 36.38 3.16
399 400 5.236478 CACTACACTGTCCTAAAACAAGTGG 59.764 44.000 6.13 0.00 33.59 4.00
400 401 4.497291 ACACTGTCCTAAAACAAGTGGA 57.503 40.909 6.13 0.00 34.96 4.02
401 402 4.850680 ACACTGTCCTAAAACAAGTGGAA 58.149 39.130 6.13 0.00 34.96 3.53
402 403 5.258051 ACACTGTCCTAAAACAAGTGGAAA 58.742 37.500 6.13 0.00 34.96 3.13
403 404 5.891551 ACACTGTCCTAAAACAAGTGGAAAT 59.108 36.000 6.13 0.00 34.96 2.17
404 405 6.183360 ACACTGTCCTAAAACAAGTGGAAATG 60.183 38.462 6.13 0.00 34.96 2.32
405 406 5.891551 ACTGTCCTAAAACAAGTGGAAATGT 59.108 36.000 0.00 0.00 0.00 2.71
406 407 6.039382 ACTGTCCTAAAACAAGTGGAAATGTC 59.961 38.462 0.00 0.00 0.00 3.06
407 408 5.888724 TGTCCTAAAACAAGTGGAAATGTCA 59.111 36.000 0.00 0.00 0.00 3.58
408 409 6.378564 TGTCCTAAAACAAGTGGAAATGTCAA 59.621 34.615 0.00 0.00 0.00 3.18
409 410 7.093727 TGTCCTAAAACAAGTGGAAATGTCAAA 60.094 33.333 0.00 0.00 0.00 2.69
410 411 7.762159 GTCCTAAAACAAGTGGAAATGTCAAAA 59.238 33.333 0.00 0.00 0.00 2.44
411 412 8.314751 TCCTAAAACAAGTGGAAATGTCAAAAA 58.685 29.630 0.00 0.00 0.00 1.94
412 413 9.108284 CCTAAAACAAGTGGAAATGTCAAAAAT 57.892 29.630 0.00 0.00 0.00 1.82
414 415 8.791327 AAAACAAGTGGAAATGTCAAAAATCT 57.209 26.923 0.00 0.00 0.00 2.40
415 416 9.883142 AAAACAAGTGGAAATGTCAAAAATCTA 57.117 25.926 0.00 0.00 0.00 1.98
416 417 9.883142 AAACAAGTGGAAATGTCAAAAATCTAA 57.117 25.926 0.00 0.00 0.00 2.10
417 418 8.871686 ACAAGTGGAAATGTCAAAAATCTAAC 57.128 30.769 0.00 0.00 0.00 2.34
418 419 7.647715 ACAAGTGGAAATGTCAAAAATCTAACG 59.352 33.333 0.00 0.00 0.00 3.18
419 420 6.149633 AGTGGAAATGTCAAAAATCTAACGC 58.850 36.000 0.00 0.00 0.00 4.84
420 421 6.016276 AGTGGAAATGTCAAAAATCTAACGCT 60.016 34.615 0.00 0.00 0.00 5.07
421 422 7.174253 AGTGGAAATGTCAAAAATCTAACGCTA 59.826 33.333 0.00 0.00 0.00 4.26
422 423 7.806014 GTGGAAATGTCAAAAATCTAACGCTAA 59.194 33.333 0.00 0.00 0.00 3.09
423 424 8.353684 TGGAAATGTCAAAAATCTAACGCTAAA 58.646 29.630 0.00 0.00 0.00 1.85
424 425 9.187455 GGAAATGTCAAAAATCTAACGCTAAAA 57.813 29.630 0.00 0.00 0.00 1.52
429 430 9.393249 TGTCAAAAATCTAACGCTAAAAATCTG 57.607 29.630 0.00 0.00 0.00 2.90
430 431 9.607285 GTCAAAAATCTAACGCTAAAAATCTGA 57.393 29.630 0.00 0.00 0.00 3.27
431 432 9.607285 TCAAAAATCTAACGCTAAAAATCTGAC 57.393 29.630 0.00 0.00 0.00 3.51
432 433 8.567221 CAAAAATCTAACGCTAAAAATCTGACG 58.433 33.333 0.00 0.00 0.00 4.35
433 434 7.591006 AAATCTAACGCTAAAAATCTGACGA 57.409 32.000 0.00 0.00 0.00 4.20
434 435 6.570690 ATCTAACGCTAAAAATCTGACGAC 57.429 37.500 0.00 0.00 0.00 4.34
435 436 4.860907 TCTAACGCTAAAAATCTGACGACC 59.139 41.667 0.00 0.00 0.00 4.79
436 437 3.034721 ACGCTAAAAATCTGACGACCA 57.965 42.857 0.00 0.00 0.00 4.02
437 438 2.993899 ACGCTAAAAATCTGACGACCAG 59.006 45.455 0.00 0.00 44.27 4.00
448 449 4.371786 TCTGACGACCAGATTTGATATGC 58.628 43.478 7.90 0.00 46.38 3.14
449 450 4.122046 CTGACGACCAGATTTGATATGCA 58.878 43.478 0.00 0.00 45.78 3.96
450 451 4.512484 TGACGACCAGATTTGATATGCAA 58.488 39.130 0.00 0.00 33.88 4.08
451 452 5.065090 CTGACGACCAGATTTGATATGCAAA 59.935 40.000 0.00 0.00 45.78 3.68
452 453 6.403527 CTGACGACCAGATTTGATATGCAAAA 60.404 38.462 0.00 0.00 45.78 2.44
453 454 7.838045 CTGACGACCAGATTTGATATGCAAAAA 60.838 37.037 0.00 0.00 45.78 1.94
517 518 7.566760 TGTTCTACAGTGAAAATTGTCATGT 57.433 32.000 0.61 9.60 0.00 3.21
518 519 8.669946 TGTTCTACAGTGAAAATTGTCATGTA 57.330 30.769 0.61 10.16 0.00 2.29
519 520 8.773645 TGTTCTACAGTGAAAATTGTCATGTAG 58.226 33.333 24.63 24.63 38.82 2.74
520 521 7.364522 TCTACAGTGAAAATTGTCATGTAGC 57.635 36.000 25.17 8.39 38.23 3.58
521 522 5.034554 ACAGTGAAAATTGTCATGTAGCG 57.965 39.130 0.61 0.00 0.00 4.26
522 523 4.515191 ACAGTGAAAATTGTCATGTAGCGT 59.485 37.500 0.61 0.00 0.00 5.07
523 524 5.699001 ACAGTGAAAATTGTCATGTAGCGTA 59.301 36.000 0.61 0.00 0.00 4.42
524 525 6.203915 ACAGTGAAAATTGTCATGTAGCGTAA 59.796 34.615 0.61 0.00 0.00 3.18
525 526 7.075121 CAGTGAAAATTGTCATGTAGCGTAAA 58.925 34.615 0.61 0.00 0.00 2.01
526 527 7.589587 CAGTGAAAATTGTCATGTAGCGTAAAA 59.410 33.333 0.61 0.00 0.00 1.52
527 528 8.132362 AGTGAAAATTGTCATGTAGCGTAAAAA 58.868 29.630 0.61 0.00 0.00 1.94
550 551 6.790285 AAATCAACAGGAAAATTGTCATGC 57.210 33.333 10.17 0.00 32.57 4.06
551 552 5.733620 ATCAACAGGAAAATTGTCATGCT 57.266 34.783 10.17 0.00 32.57 3.79
552 553 4.873817 TCAACAGGAAAATTGTCATGCTG 58.126 39.130 10.17 8.61 38.34 4.41
553 554 3.308438 ACAGGAAAATTGTCATGCTGC 57.692 42.857 10.17 0.00 36.14 5.25
554 555 2.629137 ACAGGAAAATTGTCATGCTGCA 59.371 40.909 10.17 4.13 36.14 4.41
555 556 3.250744 CAGGAAAATTGTCATGCTGCAG 58.749 45.455 10.11 10.11 0.00 4.41
556 557 1.997606 GGAAAATTGTCATGCTGCAGC 59.002 47.619 31.89 31.89 42.50 5.25
570 571 4.772046 GCTGCAGCAATTAATTGACATG 57.228 40.909 33.36 22.05 40.14 3.21
571 572 4.178540 GCTGCAGCAATTAATTGACATGT 58.821 39.130 33.36 0.00 40.14 3.21
572 573 4.032445 GCTGCAGCAATTAATTGACATGTG 59.968 41.667 33.36 17.19 40.14 3.21
573 574 5.136816 TGCAGCAATTAATTGACATGTGT 57.863 34.783 28.33 4.48 40.14 3.72
574 575 5.539979 TGCAGCAATTAATTGACATGTGTT 58.460 33.333 28.33 0.00 40.14 3.32
575 576 5.634439 TGCAGCAATTAATTGACATGTGTTC 59.366 36.000 28.33 9.79 40.14 3.18
576 577 5.220080 GCAGCAATTAATTGACATGTGTTCG 60.220 40.000 28.33 7.78 40.14 3.95
577 578 6.085573 CAGCAATTAATTGACATGTGTTCGA 58.914 36.000 28.33 0.00 40.14 3.71
578 579 6.748658 CAGCAATTAATTGACATGTGTTCGAT 59.251 34.615 28.33 0.00 40.14 3.59
579 580 6.968904 AGCAATTAATTGACATGTGTTCGATC 59.031 34.615 28.33 8.13 40.14 3.69
583 584 3.676291 TTGACATGTGTTCGATCTGGA 57.324 42.857 1.15 0.00 0.00 3.86
690 692 3.719173 TTTTCCTAAACCGTGGCAAAG 57.281 42.857 0.00 0.00 0.00 2.77
746 749 0.730840 CTAACCCCGAATTTGACCGC 59.269 55.000 0.00 0.00 0.00 5.68
774 778 1.358725 GCGATTCAGTTGCCACGCTA 61.359 55.000 0.00 0.00 42.19 4.26
936 946 1.156322 TCCTCTCCCTCTCCCTGGTT 61.156 60.000 0.00 0.00 0.00 3.67
1502 1568 7.661536 TGGAAGCTATATGTGAAAGTAGACT 57.338 36.000 0.00 0.00 0.00 3.24
1736 1819 9.341078 TGTTTGCATAATTCAGAGAGCATATTA 57.659 29.630 0.00 0.00 0.00 0.98
1988 2080 2.108952 ACAAGCCCATGAGAAAGAGGTT 59.891 45.455 0.00 0.00 0.00 3.50
1990 2082 1.005215 AGCCCATGAGAAAGAGGTTGG 59.995 52.381 0.00 0.00 0.00 3.77
2127 2219 4.334759 CCAGTCAGGCAATCAATGAACTAG 59.665 45.833 0.00 0.00 0.00 2.57
2128 2220 3.944015 AGTCAGGCAATCAATGAACTAGC 59.056 43.478 0.00 0.00 0.00 3.42
2177 2269 7.849804 TCAGGCAAAGATTGAGTTAAGTATC 57.150 36.000 0.00 0.00 0.00 2.24
2448 2542 5.782845 AGGCCTATATATATAGCTGGCCTTC 59.217 44.000 30.26 16.32 43.10 3.46
2701 2807 5.784177 ACAGTAGTGACATAGTTGGAAGTG 58.216 41.667 4.09 0.00 0.00 3.16
2840 2964 9.479549 TGCCATTCATAGTCTGACATATATAGA 57.520 33.333 10.88 0.00 32.17 1.98
2979 3105 9.463443 AATATTTTTGCACTGAAGTAACTGAAC 57.537 29.630 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.633525 GCTCACCAAGATGCATTTATGGA 59.366 43.478 24.65 9.52 35.16 3.41
1 2 3.549423 CGCTCACCAAGATGCATTTATGG 60.549 47.826 19.16 19.16 37.19 2.74
2 3 3.065786 ACGCTCACCAAGATGCATTTATG 59.934 43.478 0.00 0.24 0.00 1.90
3 4 3.282021 ACGCTCACCAAGATGCATTTAT 58.718 40.909 0.00 0.00 0.00 1.40
5 6 1.538047 ACGCTCACCAAGATGCATTT 58.462 45.000 0.00 0.00 0.00 2.32
6 7 2.283298 CTACGCTCACCAAGATGCATT 58.717 47.619 0.00 0.00 0.00 3.56
7 8 1.473965 CCTACGCTCACCAAGATGCAT 60.474 52.381 0.00 0.00 0.00 3.96
8 9 0.108186 CCTACGCTCACCAAGATGCA 60.108 55.000 0.00 0.00 0.00 3.96
9 10 0.175760 TCCTACGCTCACCAAGATGC 59.824 55.000 0.00 0.00 0.00 3.91
10 11 2.672961 TTCCTACGCTCACCAAGATG 57.327 50.000 0.00 0.00 0.00 2.90
11 12 3.695830 TTTTCCTACGCTCACCAAGAT 57.304 42.857 0.00 0.00 0.00 2.40
12 13 3.695830 ATTTTCCTACGCTCACCAAGA 57.304 42.857 0.00 0.00 0.00 3.02
13 14 4.766404 AAATTTTCCTACGCTCACCAAG 57.234 40.909 0.00 0.00 0.00 3.61
14 15 6.636562 TTAAAATTTTCCTACGCTCACCAA 57.363 33.333 6.72 0.00 0.00 3.67
15 16 6.636562 TTTAAAATTTTCCTACGCTCACCA 57.363 33.333 6.72 0.00 0.00 4.17
16 17 8.528917 AATTTTAAAATTTTCCTACGCTCACC 57.471 30.769 18.40 0.00 35.16 4.02
20 21 9.869757 AGCATAATTTTAAAATTTTCCTACGCT 57.130 25.926 26.56 19.58 39.24 5.07
33 34 9.616156 TGTAGGGAATCGTAGCATAATTTTAAA 57.384 29.630 0.00 0.00 0.00 1.52
34 35 9.268268 CTGTAGGGAATCGTAGCATAATTTTAA 57.732 33.333 0.00 0.00 0.00 1.52
35 36 8.644216 TCTGTAGGGAATCGTAGCATAATTTTA 58.356 33.333 0.00 0.00 0.00 1.52
36 37 7.506114 TCTGTAGGGAATCGTAGCATAATTTT 58.494 34.615 0.00 0.00 0.00 1.82
37 38 7.062749 TCTGTAGGGAATCGTAGCATAATTT 57.937 36.000 0.00 0.00 0.00 1.82
38 39 6.665992 TCTGTAGGGAATCGTAGCATAATT 57.334 37.500 0.00 0.00 0.00 1.40
39 40 6.665992 TTCTGTAGGGAATCGTAGCATAAT 57.334 37.500 0.00 0.00 0.00 1.28
40 41 6.474140 TTTCTGTAGGGAATCGTAGCATAA 57.526 37.500 0.00 0.00 0.00 1.90
41 42 6.474140 TTTTCTGTAGGGAATCGTAGCATA 57.526 37.500 0.00 0.00 0.00 3.14
42 43 5.353394 TTTTCTGTAGGGAATCGTAGCAT 57.647 39.130 0.00 0.00 0.00 3.79
43 44 4.811969 TTTTCTGTAGGGAATCGTAGCA 57.188 40.909 0.00 0.00 0.00 3.49
44 45 6.093633 ACAATTTTTCTGTAGGGAATCGTAGC 59.906 38.462 0.00 0.00 0.00 3.58
45 46 7.464178 CGACAATTTTTCTGTAGGGAATCGTAG 60.464 40.741 0.00 0.00 0.00 3.51
46 47 6.311935 CGACAATTTTTCTGTAGGGAATCGTA 59.688 38.462 0.00 0.00 0.00 3.43
47 48 5.121768 CGACAATTTTTCTGTAGGGAATCGT 59.878 40.000 0.00 0.00 0.00 3.73
48 49 5.350365 TCGACAATTTTTCTGTAGGGAATCG 59.650 40.000 0.00 0.00 0.00 3.34
49 50 6.543736 GTCGACAATTTTTCTGTAGGGAATC 58.456 40.000 11.55 0.00 0.00 2.52
50 51 5.121768 CGTCGACAATTTTTCTGTAGGGAAT 59.878 40.000 17.16 0.00 0.00 3.01
51 52 4.449743 CGTCGACAATTTTTCTGTAGGGAA 59.550 41.667 17.16 0.00 0.00 3.97
52 53 3.991773 CGTCGACAATTTTTCTGTAGGGA 59.008 43.478 17.16 0.00 0.00 4.20
53 54 3.424433 GCGTCGACAATTTTTCTGTAGGG 60.424 47.826 17.16 0.00 0.00 3.53
54 55 3.432252 AGCGTCGACAATTTTTCTGTAGG 59.568 43.478 17.16 0.00 0.00 3.18
55 56 4.629065 GAGCGTCGACAATTTTTCTGTAG 58.371 43.478 17.16 0.00 0.00 2.74
56 57 3.120616 CGAGCGTCGACAATTTTTCTGTA 59.879 43.478 17.16 0.00 43.74 2.74
57 58 2.096909 CGAGCGTCGACAATTTTTCTGT 60.097 45.455 17.16 0.00 43.74 3.41
58 59 2.096909 ACGAGCGTCGACAATTTTTCTG 60.097 45.455 17.16 0.00 43.74 3.02
59 60 2.132762 ACGAGCGTCGACAATTTTTCT 58.867 42.857 17.16 0.17 43.74 2.52
60 61 2.572173 ACGAGCGTCGACAATTTTTC 57.428 45.000 17.16 2.53 43.74 2.29
61 62 3.311106 TCTACGAGCGTCGACAATTTTT 58.689 40.909 17.16 0.00 43.74 1.94
62 63 2.915463 CTCTACGAGCGTCGACAATTTT 59.085 45.455 17.16 0.00 43.74 1.82
63 64 2.095364 ACTCTACGAGCGTCGACAATTT 60.095 45.455 17.16 0.00 43.74 1.82
64 65 1.467734 ACTCTACGAGCGTCGACAATT 59.532 47.619 17.16 0.00 43.74 2.32
65 66 1.085091 ACTCTACGAGCGTCGACAAT 58.915 50.000 17.16 2.29 43.74 2.71
66 67 0.870393 AACTCTACGAGCGTCGACAA 59.130 50.000 17.16 0.00 43.74 3.18
67 68 1.713597 TAACTCTACGAGCGTCGACA 58.286 50.000 17.16 0.00 43.74 4.35
68 69 2.539274 AGATAACTCTACGAGCGTCGAC 59.461 50.000 5.18 5.18 43.74 4.20
69 70 2.538861 CAGATAACTCTACGAGCGTCGA 59.461 50.000 13.06 0.00 43.74 4.20
70 71 2.284684 ACAGATAACTCTACGAGCGTCG 59.715 50.000 0.00 5.97 46.93 5.12
71 72 3.602038 CGACAGATAACTCTACGAGCGTC 60.602 52.174 0.00 0.00 34.55 5.19
72 73 2.284684 CGACAGATAACTCTACGAGCGT 59.715 50.000 0.00 0.00 34.55 5.07
73 74 2.348685 CCGACAGATAACTCTACGAGCG 60.349 54.545 0.00 0.00 34.55 5.03
74 75 2.031857 CCCGACAGATAACTCTACGAGC 60.032 54.545 0.00 0.00 34.55 5.03
75 76 3.002451 CACCCGACAGATAACTCTACGAG 59.998 52.174 0.00 0.00 34.55 4.18
76 77 2.941064 CACCCGACAGATAACTCTACGA 59.059 50.000 0.00 0.00 34.55 3.43
77 78 2.941064 TCACCCGACAGATAACTCTACG 59.059 50.000 0.00 0.00 33.34 3.51
78 79 3.243134 GCTCACCCGACAGATAACTCTAC 60.243 52.174 0.00 0.00 0.00 2.59
79 80 2.950309 GCTCACCCGACAGATAACTCTA 59.050 50.000 0.00 0.00 0.00 2.43
80 81 1.751924 GCTCACCCGACAGATAACTCT 59.248 52.381 0.00 0.00 0.00 3.24
81 82 1.202428 GGCTCACCCGACAGATAACTC 60.202 57.143 0.00 0.00 0.00 3.01
82 83 0.824759 GGCTCACCCGACAGATAACT 59.175 55.000 0.00 0.00 0.00 2.24
83 84 0.535335 TGGCTCACCCGACAGATAAC 59.465 55.000 0.00 0.00 35.87 1.89
84 85 1.496060 ATGGCTCACCCGACAGATAA 58.504 50.000 0.00 0.00 35.87 1.75
85 86 2.239400 CTATGGCTCACCCGACAGATA 58.761 52.381 0.00 0.00 35.87 1.98
86 87 1.043816 CTATGGCTCACCCGACAGAT 58.956 55.000 0.00 0.00 35.87 2.90
87 88 1.676678 GCTATGGCTCACCCGACAGA 61.677 60.000 0.00 0.00 35.87 3.41
88 89 1.227380 GCTATGGCTCACCCGACAG 60.227 63.158 0.00 0.00 35.87 3.51
89 90 2.900273 GCTATGGCTCACCCGACA 59.100 61.111 0.00 0.00 35.87 4.35
90 91 2.279517 CGCTATGGCTCACCCGAC 60.280 66.667 0.00 0.00 35.87 4.79
91 92 2.292794 GAACGCTATGGCTCACCCGA 62.293 60.000 0.00 0.00 35.87 5.14
92 93 1.883084 GAACGCTATGGCTCACCCG 60.883 63.158 0.00 0.00 35.87 5.28
93 94 1.523938 GGAACGCTATGGCTCACCC 60.524 63.158 0.00 0.00 36.09 4.61
94 95 0.811616 CTGGAACGCTATGGCTCACC 60.812 60.000 0.00 0.10 36.09 4.02
95 96 0.108138 ACTGGAACGCTATGGCTCAC 60.108 55.000 0.00 0.00 36.09 3.51
96 97 0.613260 AACTGGAACGCTATGGCTCA 59.387 50.000 0.00 0.00 36.09 4.26
97 98 1.009829 CAACTGGAACGCTATGGCTC 58.990 55.000 0.00 0.00 36.09 4.70
98 99 0.324943 ACAACTGGAACGCTATGGCT 59.675 50.000 0.00 0.00 36.09 4.75
99 100 1.165270 AACAACTGGAACGCTATGGC 58.835 50.000 0.00 0.00 0.00 4.40
100 101 4.201910 CCAATAACAACTGGAACGCTATGG 60.202 45.833 0.00 0.00 34.35 2.74
101 102 4.394920 ACCAATAACAACTGGAACGCTATG 59.605 41.667 0.00 0.00 36.49 2.23
102 103 4.585879 ACCAATAACAACTGGAACGCTAT 58.414 39.130 0.00 0.00 36.49 2.97
103 104 4.010667 ACCAATAACAACTGGAACGCTA 57.989 40.909 0.00 0.00 36.49 4.26
104 105 2.858745 ACCAATAACAACTGGAACGCT 58.141 42.857 0.00 0.00 36.49 5.07
105 106 3.126343 CCTACCAATAACAACTGGAACGC 59.874 47.826 0.00 0.00 36.49 4.84
106 107 4.320870 ACCTACCAATAACAACTGGAACG 58.679 43.478 0.00 0.00 36.49 3.95
107 108 5.310451 TGACCTACCAATAACAACTGGAAC 58.690 41.667 0.00 0.00 36.49 3.62
108 109 5.570205 TGACCTACCAATAACAACTGGAA 57.430 39.130 0.00 0.00 36.49 3.53
109 110 5.570205 TTGACCTACCAATAACAACTGGA 57.430 39.130 0.00 0.00 36.49 3.86
110 111 7.827236 TCTTATTGACCTACCAATAACAACTGG 59.173 37.037 0.00 0.00 41.44 4.00
111 112 8.786826 TCTTATTGACCTACCAATAACAACTG 57.213 34.615 0.00 0.00 41.44 3.16
112 113 8.047310 CCTCTTATTGACCTACCAATAACAACT 58.953 37.037 0.00 0.00 41.44 3.16
113 114 7.827729 ACCTCTTATTGACCTACCAATAACAAC 59.172 37.037 0.00 0.00 41.44 3.32
114 115 7.827236 CACCTCTTATTGACCTACCAATAACAA 59.173 37.037 0.00 0.00 41.44 2.83
115 116 7.335627 CACCTCTTATTGACCTACCAATAACA 58.664 38.462 0.00 0.00 41.44 2.41
116 117 6.260271 GCACCTCTTATTGACCTACCAATAAC 59.740 42.308 0.00 0.00 41.44 1.89
117 118 6.069905 TGCACCTCTTATTGACCTACCAATAA 60.070 38.462 0.00 0.00 43.03 1.40
118 119 5.427157 TGCACCTCTTATTGACCTACCAATA 59.573 40.000 0.00 0.00 37.81 1.90
119 120 4.227300 TGCACCTCTTATTGACCTACCAAT 59.773 41.667 0.00 0.00 39.76 3.16
120 121 3.585289 TGCACCTCTTATTGACCTACCAA 59.415 43.478 0.00 0.00 0.00 3.67
121 122 3.178046 TGCACCTCTTATTGACCTACCA 58.822 45.455 0.00 0.00 0.00 3.25
122 123 3.798202 CTGCACCTCTTATTGACCTACC 58.202 50.000 0.00 0.00 0.00 3.18
123 124 3.198872 GCTGCACCTCTTATTGACCTAC 58.801 50.000 0.00 0.00 0.00 3.18
124 125 2.837591 TGCTGCACCTCTTATTGACCTA 59.162 45.455 0.00 0.00 0.00 3.08
125 126 1.630369 TGCTGCACCTCTTATTGACCT 59.370 47.619 0.00 0.00 0.00 3.85
126 127 2.012673 CTGCTGCACCTCTTATTGACC 58.987 52.381 0.00 0.00 0.00 4.02
127 128 2.704572 ACTGCTGCACCTCTTATTGAC 58.295 47.619 0.00 0.00 0.00 3.18
128 129 3.076621 CAACTGCTGCACCTCTTATTGA 58.923 45.455 0.00 0.00 0.00 2.57
129 130 3.076621 TCAACTGCTGCACCTCTTATTG 58.923 45.455 0.00 0.00 0.00 1.90
130 131 3.423539 TCAACTGCTGCACCTCTTATT 57.576 42.857 0.00 0.00 0.00 1.40
131 132 3.341823 CTTCAACTGCTGCACCTCTTAT 58.658 45.455 0.00 0.00 0.00 1.73
132 133 2.550855 CCTTCAACTGCTGCACCTCTTA 60.551 50.000 0.00 0.00 0.00 2.10
133 134 1.602311 CTTCAACTGCTGCACCTCTT 58.398 50.000 0.00 0.00 0.00 2.85
134 135 0.250640 CCTTCAACTGCTGCACCTCT 60.251 55.000 0.00 0.00 0.00 3.69
135 136 1.239968 CCCTTCAACTGCTGCACCTC 61.240 60.000 0.00 0.00 0.00 3.85
136 137 1.228367 CCCTTCAACTGCTGCACCT 60.228 57.895 0.00 0.00 0.00 4.00
137 138 1.109323 AACCCTTCAACTGCTGCACC 61.109 55.000 0.00 0.00 0.00 5.01
138 139 0.746659 AAACCCTTCAACTGCTGCAC 59.253 50.000 0.00 0.00 0.00 4.57
139 140 1.032014 GAAACCCTTCAACTGCTGCA 58.968 50.000 0.88 0.88 0.00 4.41
140 141 1.000938 CAGAAACCCTTCAACTGCTGC 60.001 52.381 0.00 0.00 33.64 5.25
141 142 2.575532 TCAGAAACCCTTCAACTGCTG 58.424 47.619 0.00 0.00 33.64 4.41
142 143 3.297134 TTCAGAAACCCTTCAACTGCT 57.703 42.857 0.00 0.00 33.64 4.24
143 144 3.130340 TGTTTCAGAAACCCTTCAACTGC 59.870 43.478 21.08 0.00 40.67 4.40
144 145 4.981806 TGTTTCAGAAACCCTTCAACTG 57.018 40.909 21.08 0.00 40.67 3.16
145 146 5.656416 TCATTGTTTCAGAAACCCTTCAACT 59.344 36.000 21.08 0.00 40.67 3.16
146 147 5.901552 TCATTGTTTCAGAAACCCTTCAAC 58.098 37.500 21.08 0.00 40.67 3.18
147 148 6.537453 TTCATTGTTTCAGAAACCCTTCAA 57.463 33.333 21.08 10.22 40.67 2.69
148 149 6.337356 GTTTCATTGTTTCAGAAACCCTTCA 58.663 36.000 21.08 1.67 43.12 3.02
149 150 6.828502 GTTTCATTGTTTCAGAAACCCTTC 57.171 37.500 21.08 0.00 43.12 3.46
154 155 5.402270 CCATCGGTTTCATTGTTTCAGAAAC 59.598 40.000 17.85 17.85 46.29 2.78
155 156 5.300539 TCCATCGGTTTCATTGTTTCAGAAA 59.699 36.000 0.00 0.00 0.00 2.52
156 157 4.824537 TCCATCGGTTTCATTGTTTCAGAA 59.175 37.500 0.00 0.00 0.00 3.02
157 158 4.393834 TCCATCGGTTTCATTGTTTCAGA 58.606 39.130 0.00 0.00 0.00 3.27
158 159 4.764679 TCCATCGGTTTCATTGTTTCAG 57.235 40.909 0.00 0.00 0.00 3.02
159 160 5.521906 TTTCCATCGGTTTCATTGTTTCA 57.478 34.783 0.00 0.00 0.00 2.69
160 161 5.176774 GGTTTTCCATCGGTTTCATTGTTTC 59.823 40.000 0.00 0.00 40.31 2.78
161 162 5.053811 GGTTTTCCATCGGTTTCATTGTTT 58.946 37.500 0.00 0.00 40.31 2.83
162 163 4.100189 TGGTTTTCCATCGGTTTCATTGTT 59.900 37.500 0.00 0.00 46.22 2.83
163 164 3.639094 TGGTTTTCCATCGGTTTCATTGT 59.361 39.130 0.00 0.00 46.22 2.71
164 165 4.250116 TGGTTTTCCATCGGTTTCATTG 57.750 40.909 0.00 0.00 46.22 2.82
177 178 7.696992 TTTACCAACATATCTCTGGTTTTCC 57.303 36.000 5.45 0.00 40.65 3.13
201 202 9.379770 TCCCTTCTCTTTTCCTATTTTGATTTT 57.620 29.630 0.00 0.00 0.00 1.82
202 203 8.956446 TCCCTTCTCTTTTCCTATTTTGATTT 57.044 30.769 0.00 0.00 0.00 2.17
203 204 8.956446 TTCCCTTCTCTTTTCCTATTTTGATT 57.044 30.769 0.00 0.00 0.00 2.57
204 205 9.552695 AATTCCCTTCTCTTTTCCTATTTTGAT 57.447 29.630 0.00 0.00 0.00 2.57
205 206 8.806146 CAATTCCCTTCTCTTTTCCTATTTTGA 58.194 33.333 0.00 0.00 0.00 2.69
206 207 8.588472 ACAATTCCCTTCTCTTTTCCTATTTTG 58.412 33.333 0.00 0.00 0.00 2.44
207 208 8.727100 ACAATTCCCTTCTCTTTTCCTATTTT 57.273 30.769 0.00 0.00 0.00 1.82
208 209 9.244292 GTACAATTCCCTTCTCTTTTCCTATTT 57.756 33.333 0.00 0.00 0.00 1.40
209 210 8.390921 TGTACAATTCCCTTCTCTTTTCCTATT 58.609 33.333 0.00 0.00 0.00 1.73
210 211 7.928873 TGTACAATTCCCTTCTCTTTTCCTAT 58.071 34.615 0.00 0.00 0.00 2.57
211 212 7.324388 TGTACAATTCCCTTCTCTTTTCCTA 57.676 36.000 0.00 0.00 0.00 2.94
212 213 6.200878 TGTACAATTCCCTTCTCTTTTCCT 57.799 37.500 0.00 0.00 0.00 3.36
213 214 8.753497 ATATGTACAATTCCCTTCTCTTTTCC 57.247 34.615 0.00 0.00 0.00 3.13
217 218 9.799106 CCATAATATGTACAATTCCCTTCTCTT 57.201 33.333 0.00 0.00 0.00 2.85
218 219 8.949421 ACCATAATATGTACAATTCCCTTCTCT 58.051 33.333 0.00 0.00 0.00 3.10
219 220 9.220767 GACCATAATATGTACAATTCCCTTCTC 57.779 37.037 0.00 0.00 0.00 2.87
220 221 7.878127 CGACCATAATATGTACAATTCCCTTCT 59.122 37.037 0.00 0.00 0.00 2.85
221 222 7.119262 CCGACCATAATATGTACAATTCCCTTC 59.881 40.741 0.00 0.00 0.00 3.46
222 223 6.940298 CCGACCATAATATGTACAATTCCCTT 59.060 38.462 0.00 0.00 0.00 3.95
223 224 6.271391 TCCGACCATAATATGTACAATTCCCT 59.729 38.462 0.00 0.00 0.00 4.20
224 225 6.370718 GTCCGACCATAATATGTACAATTCCC 59.629 42.308 0.00 0.00 0.00 3.97
225 226 6.090358 CGTCCGACCATAATATGTACAATTCC 59.910 42.308 0.00 0.00 0.00 3.01
226 227 6.864685 TCGTCCGACCATAATATGTACAATTC 59.135 38.462 0.00 0.00 0.00 2.17
227 228 6.751157 TCGTCCGACCATAATATGTACAATT 58.249 36.000 0.00 4.23 0.00 2.32
228 229 6.335471 TCGTCCGACCATAATATGTACAAT 57.665 37.500 0.00 0.00 0.00 2.71
229 230 5.765176 CTCGTCCGACCATAATATGTACAA 58.235 41.667 0.00 0.00 0.00 2.41
230 231 4.320714 GCTCGTCCGACCATAATATGTACA 60.321 45.833 0.00 0.00 0.00 2.90
231 232 4.164294 GCTCGTCCGACCATAATATGTAC 58.836 47.826 0.00 0.00 0.00 2.90
232 233 3.120095 CGCTCGTCCGACCATAATATGTA 60.120 47.826 0.00 0.00 0.00 2.29
233 234 2.351447 CGCTCGTCCGACCATAATATGT 60.351 50.000 0.00 0.00 0.00 2.29
234 235 2.251040 CGCTCGTCCGACCATAATATG 58.749 52.381 0.00 0.00 0.00 1.78
235 236 1.201647 CCGCTCGTCCGACCATAATAT 59.798 52.381 0.00 0.00 0.00 1.28
236 237 0.594602 CCGCTCGTCCGACCATAATA 59.405 55.000 0.00 0.00 0.00 0.98
237 238 1.105167 TCCGCTCGTCCGACCATAAT 61.105 55.000 0.00 0.00 0.00 1.28
238 239 1.750018 TCCGCTCGTCCGACCATAA 60.750 57.895 0.00 0.00 0.00 1.90
239 240 2.124612 TCCGCTCGTCCGACCATA 60.125 61.111 0.00 0.00 0.00 2.74
240 241 3.823330 GTCCGCTCGTCCGACCAT 61.823 66.667 0.00 0.00 0.00 3.55
243 244 3.823330 ATGGTCCGCTCGTCCGAC 61.823 66.667 0.00 0.00 0.00 4.79
244 245 3.822192 CATGGTCCGCTCGTCCGA 61.822 66.667 0.00 0.00 0.00 4.55
245 246 4.873129 CCATGGTCCGCTCGTCCG 62.873 72.222 2.57 0.00 0.00 4.79
246 247 2.515996 TTTCCATGGTCCGCTCGTCC 62.516 60.000 12.58 0.00 0.00 4.79
247 248 1.079405 TTTCCATGGTCCGCTCGTC 60.079 57.895 12.58 0.00 0.00 4.20
248 249 1.375523 GTTTCCATGGTCCGCTCGT 60.376 57.895 12.58 0.00 0.00 4.18
249 250 0.673644 AAGTTTCCATGGTCCGCTCG 60.674 55.000 12.58 0.00 0.00 5.03
250 251 2.007608 GTAAGTTTCCATGGTCCGCTC 58.992 52.381 12.58 0.00 0.00 5.03
251 252 1.674817 CGTAAGTTTCCATGGTCCGCT 60.675 52.381 12.58 3.44 0.00 5.52
252 253 0.725117 CGTAAGTTTCCATGGTCCGC 59.275 55.000 12.58 1.00 0.00 5.54
253 254 1.997606 GTCGTAAGTTTCCATGGTCCG 59.002 52.381 12.58 5.04 39.48 4.79
254 255 3.048337 TGTCGTAAGTTTCCATGGTCC 57.952 47.619 12.58 0.60 39.48 4.46
255 256 5.622770 AAATGTCGTAAGTTTCCATGGTC 57.377 39.130 12.58 3.99 39.48 4.02
256 257 6.399639 AAAAATGTCGTAAGTTTCCATGGT 57.600 33.333 12.58 0.00 39.48 3.55
257 258 8.804688 TTTAAAAATGTCGTAAGTTTCCATGG 57.195 30.769 4.97 4.97 39.48 3.66
269 270 9.720769 TTCTCTCTCCTTATTTAAAAATGTCGT 57.279 29.630 0.00 0.00 0.00 4.34
278 279 9.983024 TCTCTTCTCTTCTCTCTCCTTATTTAA 57.017 33.333 0.00 0.00 0.00 1.52
280 281 9.492730 AATCTCTTCTCTTCTCTCTCCTTATTT 57.507 33.333 0.00 0.00 0.00 1.40
284 285 9.492730 AAATAATCTCTTCTCTTCTCTCTCCTT 57.507 33.333 0.00 0.00 0.00 3.36
285 286 8.917088 CAAATAATCTCTTCTCTTCTCTCTCCT 58.083 37.037 0.00 0.00 0.00 3.69
286 287 8.143835 CCAAATAATCTCTTCTCTTCTCTCTCC 58.856 40.741 0.00 0.00 0.00 3.71
287 288 7.653311 GCCAAATAATCTCTTCTCTTCTCTCTC 59.347 40.741 0.00 0.00 0.00 3.20
288 289 7.500141 GCCAAATAATCTCTTCTCTTCTCTCT 58.500 38.462 0.00 0.00 0.00 3.10
289 290 6.420604 CGCCAAATAATCTCTTCTCTTCTCTC 59.579 42.308 0.00 0.00 0.00 3.20
290 291 6.279882 CGCCAAATAATCTCTTCTCTTCTCT 58.720 40.000 0.00 0.00 0.00 3.10
291 292 5.465056 CCGCCAAATAATCTCTTCTCTTCTC 59.535 44.000 0.00 0.00 0.00 2.87
292 293 5.129485 TCCGCCAAATAATCTCTTCTCTTCT 59.871 40.000 0.00 0.00 0.00 2.85
293 294 5.360591 TCCGCCAAATAATCTCTTCTCTTC 58.639 41.667 0.00 0.00 0.00 2.87
294 295 5.359194 TCCGCCAAATAATCTCTTCTCTT 57.641 39.130 0.00 0.00 0.00 2.85
295 296 5.359194 TTCCGCCAAATAATCTCTTCTCT 57.641 39.130 0.00 0.00 0.00 3.10
296 297 6.625873 ATTTCCGCCAAATAATCTCTTCTC 57.374 37.500 0.00 0.00 32.48 2.87
297 298 7.054124 TGTATTTCCGCCAAATAATCTCTTCT 58.946 34.615 0.70 0.00 38.45 2.85
298 299 7.259290 TGTATTTCCGCCAAATAATCTCTTC 57.741 36.000 0.70 0.00 38.45 2.87
299 300 7.639113 TTGTATTTCCGCCAAATAATCTCTT 57.361 32.000 0.70 0.00 38.45 2.85
300 301 7.823745 ATTGTATTTCCGCCAAATAATCTCT 57.176 32.000 0.70 0.00 38.45 3.10
301 302 7.382218 CCAATTGTATTTCCGCCAAATAATCTC 59.618 37.037 4.43 0.00 38.45 2.75
302 303 7.147742 ACCAATTGTATTTCCGCCAAATAATCT 60.148 33.333 4.43 0.00 38.45 2.40
303 304 6.983890 ACCAATTGTATTTCCGCCAAATAATC 59.016 34.615 4.43 0.00 38.45 1.75
304 305 6.760770 CACCAATTGTATTTCCGCCAAATAAT 59.239 34.615 4.43 0.00 38.45 1.28
305 306 6.102663 CACCAATTGTATTTCCGCCAAATAA 58.897 36.000 4.43 0.00 38.45 1.40
306 307 5.186021 ACACCAATTGTATTTCCGCCAAATA 59.814 36.000 4.43 0.00 36.32 1.40
307 308 4.020662 ACACCAATTGTATTTCCGCCAAAT 60.021 37.500 4.43 0.00 36.32 2.32
308 309 3.322254 ACACCAATTGTATTTCCGCCAAA 59.678 39.130 4.43 0.00 36.32 3.28
309 310 2.894126 ACACCAATTGTATTTCCGCCAA 59.106 40.909 4.43 0.00 36.32 4.52
310 311 2.520069 ACACCAATTGTATTTCCGCCA 58.480 42.857 4.43 0.00 36.32 5.69
311 312 3.249917 CAACACCAATTGTATTTCCGCC 58.750 45.455 4.43 0.00 37.51 6.13
312 313 3.908213 ACAACACCAATTGTATTTCCGC 58.092 40.909 4.43 0.00 41.04 5.54
313 314 5.768317 AGAACAACACCAATTGTATTTCCG 58.232 37.500 4.43 0.00 42.01 4.30
314 315 7.433680 AGAAGAACAACACCAATTGTATTTCC 58.566 34.615 4.43 0.00 42.01 3.13
338 339 9.605275 CCACCTTGGAACATGATACATATATAG 57.395 37.037 0.00 0.00 40.96 1.31
339 340 9.332713 TCCACCTTGGAACATGATACATATATA 57.667 33.333 0.00 0.00 45.00 0.86
340 341 8.218423 TCCACCTTGGAACATGATACATATAT 57.782 34.615 0.00 0.00 45.00 0.86
341 342 7.625498 TCCACCTTGGAACATGATACATATA 57.375 36.000 0.00 0.00 45.00 0.86
342 343 6.514012 TCCACCTTGGAACATGATACATAT 57.486 37.500 0.00 0.00 45.00 1.78
343 344 5.966853 TCCACCTTGGAACATGATACATA 57.033 39.130 0.00 0.00 45.00 2.29
344 345 4.860802 TCCACCTTGGAACATGATACAT 57.139 40.909 0.00 0.00 45.00 2.29
355 356 3.826157 GTGATCAAATTGTCCACCTTGGA 59.174 43.478 0.00 0.00 45.98 3.53
356 357 3.828451 AGTGATCAAATTGTCCACCTTGG 59.172 43.478 0.00 0.00 39.43 3.61
357 358 5.473162 TGTAGTGATCAAATTGTCCACCTTG 59.527 40.000 0.00 0.00 0.00 3.61
358 359 5.473504 GTGTAGTGATCAAATTGTCCACCTT 59.526 40.000 0.00 3.65 0.00 3.50
359 360 5.003804 GTGTAGTGATCAAATTGTCCACCT 58.996 41.667 0.00 0.00 0.00 4.00
360 361 5.003804 AGTGTAGTGATCAAATTGTCCACC 58.996 41.667 0.00 4.47 0.00 4.61
361 362 5.470098 ACAGTGTAGTGATCAAATTGTCCAC 59.530 40.000 0.00 10.64 0.00 4.02
362 363 5.620206 ACAGTGTAGTGATCAAATTGTCCA 58.380 37.500 0.00 0.00 0.00 4.02
363 364 5.122396 GGACAGTGTAGTGATCAAATTGTCC 59.878 44.000 19.02 19.02 34.97 4.02
364 365 5.934625 AGGACAGTGTAGTGATCAAATTGTC 59.065 40.000 0.00 6.53 0.00 3.18
365 366 5.869579 AGGACAGTGTAGTGATCAAATTGT 58.130 37.500 0.00 0.00 0.00 2.71
366 367 7.905604 TTAGGACAGTGTAGTGATCAAATTG 57.094 36.000 0.00 0.00 0.00 2.32
367 368 8.784043 GTTTTAGGACAGTGTAGTGATCAAATT 58.216 33.333 0.00 0.00 0.00 1.82
368 369 7.936847 TGTTTTAGGACAGTGTAGTGATCAAAT 59.063 33.333 0.00 0.00 0.00 2.32
369 370 7.276658 TGTTTTAGGACAGTGTAGTGATCAAA 58.723 34.615 0.00 0.00 0.00 2.69
370 371 6.822442 TGTTTTAGGACAGTGTAGTGATCAA 58.178 36.000 0.00 0.00 0.00 2.57
371 372 6.413783 TGTTTTAGGACAGTGTAGTGATCA 57.586 37.500 0.00 0.00 0.00 2.92
372 373 6.929606 ACTTGTTTTAGGACAGTGTAGTGATC 59.070 38.462 0.00 0.00 0.00 2.92
373 374 6.706270 CACTTGTTTTAGGACAGTGTAGTGAT 59.294 38.462 10.23 0.00 37.06 3.06
374 375 6.046593 CACTTGTTTTAGGACAGTGTAGTGA 58.953 40.000 10.23 0.00 37.06 3.41
375 376 5.236478 CCACTTGTTTTAGGACAGTGTAGTG 59.764 44.000 0.00 2.86 35.74 2.74
376 377 5.129815 TCCACTTGTTTTAGGACAGTGTAGT 59.870 40.000 0.00 0.00 32.09 2.73
377 378 5.607477 TCCACTTGTTTTAGGACAGTGTAG 58.393 41.667 0.00 0.00 32.09 2.74
378 379 5.617528 TCCACTTGTTTTAGGACAGTGTA 57.382 39.130 0.00 0.00 32.09 2.90
379 380 4.497291 TCCACTTGTTTTAGGACAGTGT 57.503 40.909 0.00 0.00 32.09 3.55
380 381 5.828299 TTTCCACTTGTTTTAGGACAGTG 57.172 39.130 0.00 0.00 32.94 3.66
381 382 5.891551 ACATTTCCACTTGTTTTAGGACAGT 59.108 36.000 0.00 0.00 0.00 3.55
382 383 6.039270 TGACATTTCCACTTGTTTTAGGACAG 59.961 38.462 0.00 0.00 0.00 3.51
383 384 5.888724 TGACATTTCCACTTGTTTTAGGACA 59.111 36.000 0.00 0.00 0.00 4.02
384 385 6.385649 TGACATTTCCACTTGTTTTAGGAC 57.614 37.500 0.00 0.00 0.00 3.85
385 386 7.411486 TTTGACATTTCCACTTGTTTTAGGA 57.589 32.000 0.00 0.00 0.00 2.94
386 387 8.485976 TTTTTGACATTTCCACTTGTTTTAGG 57.514 30.769 0.00 0.00 0.00 2.69
388 389 9.883142 AGATTTTTGACATTTCCACTTGTTTTA 57.117 25.926 0.00 0.00 0.00 1.52
389 390 8.791327 AGATTTTTGACATTTCCACTTGTTTT 57.209 26.923 0.00 0.00 0.00 2.43
390 391 9.883142 TTAGATTTTTGACATTTCCACTTGTTT 57.117 25.926 0.00 0.00 0.00 2.83
391 392 9.313118 GTTAGATTTTTGACATTTCCACTTGTT 57.687 29.630 0.00 0.00 0.00 2.83
392 393 7.647715 CGTTAGATTTTTGACATTTCCACTTGT 59.352 33.333 0.00 0.00 0.00 3.16
393 394 7.358352 GCGTTAGATTTTTGACATTTCCACTTG 60.358 37.037 0.00 0.00 0.00 3.16
394 395 6.640907 GCGTTAGATTTTTGACATTTCCACTT 59.359 34.615 0.00 0.00 0.00 3.16
395 396 6.016276 AGCGTTAGATTTTTGACATTTCCACT 60.016 34.615 0.00 0.00 0.00 4.00
396 397 6.149633 AGCGTTAGATTTTTGACATTTCCAC 58.850 36.000 0.00 0.00 0.00 4.02
397 398 6.325919 AGCGTTAGATTTTTGACATTTCCA 57.674 33.333 0.00 0.00 0.00 3.53
398 399 8.736751 TTTAGCGTTAGATTTTTGACATTTCC 57.263 30.769 0.00 0.00 0.00 3.13
403 404 9.393249 CAGATTTTTAGCGTTAGATTTTTGACA 57.607 29.630 0.00 0.00 0.00 3.58
404 405 9.607285 TCAGATTTTTAGCGTTAGATTTTTGAC 57.393 29.630 0.00 0.00 0.00 3.18
405 406 9.607285 GTCAGATTTTTAGCGTTAGATTTTTGA 57.393 29.630 0.00 0.00 0.00 2.69
406 407 8.567221 CGTCAGATTTTTAGCGTTAGATTTTTG 58.433 33.333 0.00 0.00 0.00 2.44
407 408 8.500773 TCGTCAGATTTTTAGCGTTAGATTTTT 58.499 29.630 0.00 0.00 0.00 1.94
408 409 7.955864 GTCGTCAGATTTTTAGCGTTAGATTTT 59.044 33.333 0.00 0.00 0.00 1.82
409 410 7.412672 GGTCGTCAGATTTTTAGCGTTAGATTT 60.413 37.037 0.00 0.00 0.00 2.17
410 411 6.035758 GGTCGTCAGATTTTTAGCGTTAGATT 59.964 38.462 0.00 0.00 0.00 2.40
411 412 5.519206 GGTCGTCAGATTTTTAGCGTTAGAT 59.481 40.000 0.00 0.00 0.00 1.98
412 413 4.860907 GGTCGTCAGATTTTTAGCGTTAGA 59.139 41.667 0.00 0.00 0.00 2.10
413 414 4.624024 TGGTCGTCAGATTTTTAGCGTTAG 59.376 41.667 0.00 0.00 0.00 2.34
414 415 4.558178 TGGTCGTCAGATTTTTAGCGTTA 58.442 39.130 0.00 0.00 0.00 3.18
415 416 3.395639 TGGTCGTCAGATTTTTAGCGTT 58.604 40.909 0.00 0.00 0.00 4.84
416 417 2.993899 CTGGTCGTCAGATTTTTAGCGT 59.006 45.455 3.13 0.00 46.18 5.07
417 418 3.250744 TCTGGTCGTCAGATTTTTAGCG 58.749 45.455 7.04 0.00 46.71 4.26
427 428 4.122046 TGCATATCAAATCTGGTCGTCAG 58.878 43.478 2.88 2.88 44.68 3.51
428 429 4.135747 TGCATATCAAATCTGGTCGTCA 57.864 40.909 0.00 0.00 0.00 4.35
429 430 5.484173 TTTGCATATCAAATCTGGTCGTC 57.516 39.130 0.00 0.00 39.58 4.20
430 431 5.895636 TTTTGCATATCAAATCTGGTCGT 57.104 34.783 0.00 0.00 43.53 4.34
431 432 6.092092 TGTTTTTGCATATCAAATCTGGTCG 58.908 36.000 0.00 0.00 43.53 4.79
432 433 9.754382 ATATGTTTTTGCATATCAAATCTGGTC 57.246 29.630 0.00 0.00 43.53 4.02
491 492 9.283768 ACATGACAATTTTCACTGTAGAACATA 57.716 29.630 0.00 0.00 0.00 2.29
492 493 8.169977 ACATGACAATTTTCACTGTAGAACAT 57.830 30.769 0.00 0.00 0.00 2.71
493 494 7.566760 ACATGACAATTTTCACTGTAGAACA 57.433 32.000 0.00 0.00 0.00 3.18
494 495 7.746475 GCTACATGACAATTTTCACTGTAGAAC 59.254 37.037 26.96 16.82 38.39 3.01
495 496 7.360017 CGCTACATGACAATTTTCACTGTAGAA 60.360 37.037 26.96 10.24 38.39 2.10
496 497 6.090763 CGCTACATGACAATTTTCACTGTAGA 59.909 38.462 26.96 10.67 38.39 2.59
497 498 6.128553 ACGCTACATGACAATTTTCACTGTAG 60.129 38.462 23.06 23.06 38.70 2.74
498 499 5.699001 ACGCTACATGACAATTTTCACTGTA 59.301 36.000 0.00 6.58 0.00 2.74
499 500 4.515191 ACGCTACATGACAATTTTCACTGT 59.485 37.500 0.00 5.85 0.00 3.55
500 501 5.034554 ACGCTACATGACAATTTTCACTG 57.965 39.130 0.00 0.41 0.00 3.66
501 502 6.795098 TTACGCTACATGACAATTTTCACT 57.205 33.333 0.00 0.00 0.00 3.41
502 503 7.845617 TTTTACGCTACATGACAATTTTCAC 57.154 32.000 0.00 0.00 0.00 3.18
525 526 7.499895 AGCATGACAATTTTCCTGTTGATTTTT 59.500 29.630 0.00 0.00 0.00 1.94
526 527 6.993902 AGCATGACAATTTTCCTGTTGATTTT 59.006 30.769 0.00 0.00 0.00 1.82
527 528 6.425721 CAGCATGACAATTTTCCTGTTGATTT 59.574 34.615 7.60 0.00 39.69 2.17
528 529 5.929992 CAGCATGACAATTTTCCTGTTGATT 59.070 36.000 7.60 0.00 39.69 2.57
529 530 5.475719 CAGCATGACAATTTTCCTGTTGAT 58.524 37.500 7.60 0.00 39.69 2.57
530 531 4.796946 GCAGCATGACAATTTTCCTGTTGA 60.797 41.667 14.69 0.00 39.69 3.18
531 532 3.430895 GCAGCATGACAATTTTCCTGTTG 59.569 43.478 8.62 8.62 39.69 3.33
532 533 3.069872 TGCAGCATGACAATTTTCCTGTT 59.930 39.130 0.00 0.00 39.69 3.16
533 534 2.629137 TGCAGCATGACAATTTTCCTGT 59.371 40.909 0.00 0.00 39.69 4.00
534 535 3.250744 CTGCAGCATGACAATTTTCCTG 58.749 45.455 0.00 0.00 39.69 3.86
535 536 2.353406 GCTGCAGCATGACAATTTTCCT 60.353 45.455 33.36 0.00 39.69 3.36
536 537 1.997606 GCTGCAGCATGACAATTTTCC 59.002 47.619 33.36 0.00 39.69 3.13
549 550 4.032445 CACATGTCAATTAATTGCTGCAGC 59.968 41.667 31.89 31.89 37.68 5.25
550 551 5.165676 ACACATGTCAATTAATTGCTGCAG 58.834 37.500 21.15 10.11 37.68 4.41
551 552 5.136816 ACACATGTCAATTAATTGCTGCA 57.863 34.783 21.15 18.38 37.68 4.41
552 553 5.220080 CGAACACATGTCAATTAATTGCTGC 60.220 40.000 21.15 14.24 37.68 5.25
553 554 6.085573 TCGAACACATGTCAATTAATTGCTG 58.914 36.000 21.15 18.61 37.68 4.41
554 555 6.252967 TCGAACACATGTCAATTAATTGCT 57.747 33.333 21.15 7.44 37.68 3.91
555 556 6.968904 AGATCGAACACATGTCAATTAATTGC 59.031 34.615 21.15 16.43 37.68 3.56
556 557 7.430211 CCAGATCGAACACATGTCAATTAATTG 59.570 37.037 20.13 20.13 39.10 2.32
557 558 7.336679 TCCAGATCGAACACATGTCAATTAATT 59.663 33.333 0.00 0.00 0.00 1.40
558 559 6.823182 TCCAGATCGAACACATGTCAATTAAT 59.177 34.615 0.00 0.00 0.00 1.40
559 560 6.169800 TCCAGATCGAACACATGTCAATTAA 58.830 36.000 0.00 0.00 0.00 1.40
560 561 5.729510 TCCAGATCGAACACATGTCAATTA 58.270 37.500 0.00 0.00 0.00 1.40
561 562 4.578871 TCCAGATCGAACACATGTCAATT 58.421 39.130 0.00 0.00 0.00 2.32
562 563 4.206477 TCCAGATCGAACACATGTCAAT 57.794 40.909 0.00 0.00 0.00 2.57
563 564 3.676291 TCCAGATCGAACACATGTCAA 57.324 42.857 0.00 0.00 0.00 3.18
564 565 3.195396 TCATCCAGATCGAACACATGTCA 59.805 43.478 0.00 0.00 0.00 3.58
565 566 3.785486 TCATCCAGATCGAACACATGTC 58.215 45.455 0.00 0.00 0.00 3.06
566 567 3.196469 ACTCATCCAGATCGAACACATGT 59.804 43.478 0.00 0.00 0.00 3.21
567 568 3.790091 ACTCATCCAGATCGAACACATG 58.210 45.455 0.00 0.00 0.00 3.21
568 569 5.798125 ATACTCATCCAGATCGAACACAT 57.202 39.130 0.00 0.00 0.00 3.21
569 570 5.598416 AATACTCATCCAGATCGAACACA 57.402 39.130 0.00 0.00 0.00 3.72
570 571 7.042658 GGTTAAATACTCATCCAGATCGAACAC 60.043 40.741 0.00 0.00 0.00 3.32
571 572 6.984474 GGTTAAATACTCATCCAGATCGAACA 59.016 38.462 0.00 0.00 0.00 3.18
572 573 6.984474 TGGTTAAATACTCATCCAGATCGAAC 59.016 38.462 0.00 0.00 0.00 3.95
573 574 7.119709 TGGTTAAATACTCATCCAGATCGAA 57.880 36.000 0.00 0.00 0.00 3.71
574 575 6.724893 TGGTTAAATACTCATCCAGATCGA 57.275 37.500 0.00 0.00 0.00 3.59
575 576 7.786178 TTTGGTTAAATACTCATCCAGATCG 57.214 36.000 0.00 0.00 0.00 3.69
576 577 9.788960 GTTTTTGGTTAAATACTCATCCAGATC 57.211 33.333 0.00 0.00 0.00 2.75
577 578 9.533831 AGTTTTTGGTTAAATACTCATCCAGAT 57.466 29.630 0.00 0.00 34.37 2.90
578 579 8.934023 AGTTTTTGGTTAAATACTCATCCAGA 57.066 30.769 0.00 0.00 34.37 3.86
583 584 9.357161 TGTGGTAGTTTTTGGTTAAATACTCAT 57.643 29.630 0.00 0.00 38.47 2.90
690 692 3.303760 GCGATTTCGAGAGTTGGTAGTTC 59.696 47.826 3.77 0.00 43.02 3.01
746 749 3.204827 CTGAATCGCGGGCCCAAG 61.205 66.667 24.92 15.39 0.00 3.61
1139 1150 6.273071 AGAAACTTCGAATCAAACCAAAAGG 58.727 36.000 0.00 0.00 0.00 3.11
1988 2080 5.754782 TCAATTTCCTTCTATAGCTTGCCA 58.245 37.500 0.00 0.00 0.00 4.92
1990 2082 8.794308 GAAATCAATTTCCTTCTATAGCTTGC 57.206 34.615 0.00 0.00 40.10 4.01
2127 2219 5.277731 CCTCAAGTTGTTTCTTCTTCTCAGC 60.278 44.000 2.11 0.00 0.00 4.26
2128 2220 6.051717 TCCTCAAGTTGTTTCTTCTTCTCAG 58.948 40.000 2.11 0.00 0.00 3.35
2177 2269 2.490328 TGGCAAGCTTCAACTTTTCG 57.510 45.000 0.00 0.00 0.00 3.46
2184 2276 0.467844 TGCTCCTTGGCAAGCTTCAA 60.468 50.000 21.77 0.00 39.43 2.69
2448 2542 3.374988 ACACCTAACATGCATGACATTCG 59.625 43.478 32.75 17.65 36.64 3.34
2642 2736 9.565090 ACACATGATATATGCAGAGTAAAACAT 57.435 29.630 0.00 0.00 0.00 2.71
2748 2863 4.246458 ACTTGCTACTTGCTACTTGCTAC 58.754 43.478 0.00 0.00 43.37 3.58
2749 2864 4.537135 ACTTGCTACTTGCTACTTGCTA 57.463 40.909 0.00 0.00 43.37 3.49
2750 2865 3.409026 ACTTGCTACTTGCTACTTGCT 57.591 42.857 0.00 0.00 43.37 3.91
2751 2866 3.062774 GCTACTTGCTACTTGCTACTTGC 59.937 47.826 0.00 0.00 43.37 4.01
2752 2867 4.245660 TGCTACTTGCTACTTGCTACTTG 58.754 43.478 0.00 0.00 43.37 3.16
2753 2868 4.537135 TGCTACTTGCTACTTGCTACTT 57.463 40.909 0.00 0.00 43.37 2.24
2754 2869 4.021016 ACTTGCTACTTGCTACTTGCTACT 60.021 41.667 0.00 0.00 43.37 2.57
2840 2964 7.117397 TGTCAGGCACTATCTACTACTAGTTT 58.883 38.462 0.00 0.00 36.02 2.66
2940 3066 5.629020 TGCAAAAATATTCAGTTTCGTCAGC 59.371 36.000 0.00 0.00 0.00 4.26
2979 3105 1.739562 GGAGGAGTGAAGTGCTGCG 60.740 63.158 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.