Multiple sequence alignment - TraesCS7D01G023900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G023900 chr7D 100.000 3096 0 0 1 3096 11128353 11125258 0.000000e+00 5718.0
1 TraesCS7D01G023900 chr4B 94.078 1182 35 4 1949 3096 223387418 223388598 0.000000e+00 1762.0
2 TraesCS7D01G023900 chr4B 96.436 1010 31 4 918 1922 223386473 223387482 0.000000e+00 1661.0
3 TraesCS7D01G023900 chr4B 95.385 65 3 0 611 675 7520619 7520555 1.520000e-18 104.0
4 TraesCS7D01G023900 chr2A 92.616 1246 54 14 695 1921 772956019 772957245 0.000000e+00 1757.0
5 TraesCS7D01G023900 chr2A 92.258 1227 58 20 701 1921 22589585 22590780 0.000000e+00 1705.0
6 TraesCS7D01G023900 chr2A 91.845 1214 59 10 736 1921 700237749 700236548 0.000000e+00 1657.0
7 TraesCS7D01G023900 chr2A 92.976 1139 46 17 787 1921 22627938 22629046 0.000000e+00 1629.0
8 TraesCS7D01G023900 chr2A 91.476 657 17 5 2478 3096 22591120 22591775 0.000000e+00 867.0
9 TraesCS7D01G023900 chr2A 91.159 656 21 4 2478 3096 772957585 772958240 0.000000e+00 856.0
10 TraesCS7D01G023900 chr2A 90.274 658 25 4 2478 3096 700236208 700235551 0.000000e+00 824.0
11 TraesCS7D01G023900 chr2A 90.995 633 18 5 2478 3072 22629386 22630017 0.000000e+00 817.0
12 TraesCS7D01G023900 chr2A 97.015 402 12 0 1949 2350 22590718 22591119 0.000000e+00 676.0
13 TraesCS7D01G023900 chr2A 97.015 402 12 0 1949 2350 22628984 22629385 0.000000e+00 676.0
14 TraesCS7D01G023900 chr2A 97.015 402 12 0 1949 2350 772957183 772957584 0.000000e+00 676.0
15 TraesCS7D01G023900 chr2A 94.527 201 9 2 2896 3094 759633323 759633123 3.000000e-80 309.0
16 TraesCS7D01G023900 chr2D 92.376 1246 54 11 705 1921 647524611 647523378 0.000000e+00 1736.0
17 TraesCS7D01G023900 chr2D 90.868 657 22 6 2478 3096 647523040 647522384 0.000000e+00 846.0
18 TraesCS7D01G023900 chr2D 96.517 402 12 1 1949 2350 647523440 647523041 0.000000e+00 664.0
19 TraesCS7D01G023900 chr2D 95.025 201 8 2 2896 3094 632318320 632318520 6.440000e-82 315.0
20 TraesCS7D01G023900 chr1A 91.513 1249 50 24 699 1921 97163673 97162455 0.000000e+00 1668.0
21 TraesCS7D01G023900 chr1A 90.498 642 19 10 2478 3078 97162115 97161475 0.000000e+00 809.0
22 TraesCS7D01G023900 chr1A 96.517 402 14 0 1949 2350 97162517 97162116 0.000000e+00 665.0
23 TraesCS7D01G023900 chr1A 91.284 218 14 5 2881 3094 581640775 581640991 3.020000e-75 292.0
24 TraesCS7D01G023900 chr3A 91.360 1250 48 29 701 1921 136527865 136526647 0.000000e+00 1655.0
25 TraesCS7D01G023900 chr3A 91.476 657 15 6 2478 3096 136526307 136525654 0.000000e+00 865.0
26 TraesCS7D01G023900 chr3A 96.020 402 16 0 1949 2350 136526709 136526308 0.000000e+00 654.0
27 TraesCS7D01G023900 chr3A 90.566 53 5 0 494 546 716571112 716571164 1.540000e-08 71.3
28 TraesCS7D01G023900 chr1B 91.491 999 51 12 1949 2924 212661999 212661012 0.000000e+00 1343.0
29 TraesCS7D01G023900 chr1B 92.751 607 39 3 1320 1921 212662543 212661937 0.000000e+00 872.0
30 TraesCS7D01G023900 chr1B 92.683 205 12 3 2893 3094 439437632 439437428 3.020000e-75 292.0
31 TraesCS7D01G023900 chr1B 92.683 205 12 3 2893 3094 633758888 633758684 3.020000e-75 292.0
32 TraesCS7D01G023900 chr1B 87.444 223 27 1 1029 1251 212662775 212662554 3.960000e-64 255.0
33 TraesCS7D01G023900 chr1B 95.652 69 3 0 607 675 650185760 650185828 9.080000e-21 111.0
34 TraesCS7D01G023900 chr5A 89.744 1014 49 22 700 1689 383828587 383829569 0.000000e+00 1245.0
35 TraesCS7D01G023900 chr5A 91.476 657 17 5 2478 3096 383830572 383831227 0.000000e+00 867.0
36 TraesCS7D01G023900 chr5A 96.766 402 13 0 1949 2350 383830170 383830571 0.000000e+00 671.0
37 TraesCS7D01G023900 chr3B 94.000 200 10 2 2897 3094 143519835 143520034 5.020000e-78 302.0
38 TraesCS7D01G023900 chr6B 93.500 200 11 2 2897 3094 281009178 281008979 2.330000e-76 296.0
39 TraesCS7D01G023900 chr7A 92.195 205 13 3 2893 3094 434775643 434775439 1.400000e-73 287.0
40 TraesCS7D01G023900 chr7B 80.444 225 33 3 956 1172 611981061 611980840 8.880000e-36 161.0
41 TraesCS7D01G023900 chr7B 81.746 126 20 3 483 606 199210679 199210803 5.460000e-18 102.0
42 TraesCS7D01G023900 chr6A 82.873 181 28 1 992 1172 577859059 577858882 3.200000e-35 159.0
43 TraesCS7D01G023900 chr6D 85.600 125 16 2 486 609 257990811 257990688 2.510000e-26 130.0
44 TraesCS7D01G023900 chr5D 89.474 95 5 1 607 701 411998651 411998562 7.020000e-22 115.0
45 TraesCS7D01G023900 chr5D 89.474 95 5 1 607 701 412042663 412042574 7.020000e-22 115.0
46 TraesCS7D01G023900 chr4D 94.521 73 3 1 604 675 146024817 146024745 9.080000e-21 111.0
47 TraesCS7D01G023900 chr4D 94.521 73 3 1 603 675 509368617 509368546 9.080000e-21 111.0
48 TraesCS7D01G023900 chr4A 94.203 69 4 0 607 675 101515643 101515575 4.220000e-19 106.0
49 TraesCS7D01G023900 chrUn 94.118 68 4 0 608 675 331268753 331268820 1.520000e-18 104.0
50 TraesCS7D01G023900 chrUn 94.118 68 4 0 608 675 364131874 364131941 1.520000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G023900 chr7D 11125258 11128353 3095 True 5718.000000 5718 100.000000 1 3096 1 chr7D.!!$R1 3095
1 TraesCS7D01G023900 chr4B 223386473 223388598 2125 False 1711.500000 1762 95.257000 918 3096 2 chr4B.!!$F1 2178
2 TraesCS7D01G023900 chr2A 700235551 700237749 2198 True 1240.500000 1657 91.059500 736 3096 2 chr2A.!!$R2 2360
3 TraesCS7D01G023900 chr2A 772956019 772958240 2221 False 1096.333333 1757 93.596667 695 3096 3 chr2A.!!$F3 2401
4 TraesCS7D01G023900 chr2A 22589585 22591775 2190 False 1082.666667 1705 93.583000 701 3096 3 chr2A.!!$F1 2395
5 TraesCS7D01G023900 chr2A 22627938 22630017 2079 False 1040.666667 1629 93.662000 787 3072 3 chr2A.!!$F2 2285
6 TraesCS7D01G023900 chr2D 647522384 647524611 2227 True 1082.000000 1736 93.253667 705 3096 3 chr2D.!!$R1 2391
7 TraesCS7D01G023900 chr1A 97161475 97163673 2198 True 1047.333333 1668 92.842667 699 3078 3 chr1A.!!$R1 2379
8 TraesCS7D01G023900 chr3A 136525654 136527865 2211 True 1058.000000 1655 92.952000 701 3096 3 chr3A.!!$R1 2395
9 TraesCS7D01G023900 chr1B 212661012 212662775 1763 True 823.333333 1343 90.562000 1029 2924 3 chr1B.!!$R3 1895
10 TraesCS7D01G023900 chr5A 383828587 383831227 2640 False 927.666667 1245 92.662000 700 3096 3 chr5A.!!$F1 2396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 378 0.032130 ACGTCGGCTAATCGCATCAT 59.968 50.0 0.00 0.0 41.67 2.45 F
626 627 0.177141 AGTACATATGCCCGTGCGTT 59.823 50.0 1.58 0.0 41.78 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1226 1288 0.250081 GATGGATCGGGGAAGCTGAC 60.250 60.000 0.0 0.0 0.0 3.51 R
2152 2650 2.324541 ACCTTCACAGAACTCTCAGCT 58.675 47.619 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.080654 ATAGGAGCTCTCAGACCCAC 57.919 55.000 14.64 0.00 0.00 4.61
20 21 0.394488 TAGGAGCTCTCAGACCCACG 60.394 60.000 14.64 0.00 0.00 4.94
21 22 1.979693 GGAGCTCTCAGACCCACGT 60.980 63.158 14.64 0.00 0.00 4.49
22 23 0.680280 GGAGCTCTCAGACCCACGTA 60.680 60.000 14.64 0.00 0.00 3.57
23 24 1.394618 GAGCTCTCAGACCCACGTAT 58.605 55.000 6.43 0.00 0.00 3.06
24 25 1.066303 GAGCTCTCAGACCCACGTATG 59.934 57.143 6.43 0.00 32.25 2.39
25 26 0.818296 GCTCTCAGACCCACGTATGT 59.182 55.000 0.00 0.00 32.84 2.29
26 27 1.204941 GCTCTCAGACCCACGTATGTT 59.795 52.381 0.00 0.00 32.84 2.71
27 28 2.881074 CTCTCAGACCCACGTATGTTG 58.119 52.381 0.00 0.00 32.84 3.33
28 29 1.067142 TCTCAGACCCACGTATGTTGC 60.067 52.381 0.00 0.00 32.84 4.17
29 30 0.973632 TCAGACCCACGTATGTTGCT 59.026 50.000 0.00 0.00 32.84 3.91
30 31 1.078709 CAGACCCACGTATGTTGCTG 58.921 55.000 0.00 0.00 0.00 4.41
31 32 0.673644 AGACCCACGTATGTTGCTGC 60.674 55.000 0.00 0.00 0.00 5.25
32 33 0.673644 GACCCACGTATGTTGCTGCT 60.674 55.000 0.00 0.00 0.00 4.24
33 34 0.955428 ACCCACGTATGTTGCTGCTG 60.955 55.000 0.00 0.00 0.00 4.41
34 35 1.135315 CCACGTATGTTGCTGCTGC 59.865 57.895 8.89 8.89 40.20 5.25
35 36 1.225827 CACGTATGTTGCTGCTGCG 60.226 57.895 11.21 0.00 43.34 5.18
36 37 1.667830 ACGTATGTTGCTGCTGCGT 60.668 52.632 11.21 0.00 43.34 5.24
37 38 1.225827 CGTATGTTGCTGCTGCGTG 60.226 57.895 11.21 0.00 43.34 5.34
38 39 1.512734 GTATGTTGCTGCTGCGTGC 60.513 57.895 11.21 9.91 43.34 5.34
57 58 2.404265 CACGATTTGCATGTGTGTGT 57.596 45.000 0.00 0.00 0.00 3.72
58 59 2.045586 CACGATTTGCATGTGTGTGTG 58.954 47.619 0.00 0.00 0.00 3.82
59 60 1.054574 CGATTTGCATGTGTGTGTGC 58.945 50.000 0.00 0.00 41.61 4.57
60 61 1.335233 CGATTTGCATGTGTGTGTGCT 60.335 47.619 0.00 0.00 41.78 4.40
61 62 2.055838 GATTTGCATGTGTGTGTGCTG 58.944 47.619 0.00 0.00 41.78 4.41
62 63 0.528033 TTTGCATGTGTGTGTGCTGC 60.528 50.000 0.00 0.00 41.78 5.25
63 64 2.427905 GCATGTGTGTGTGCTGCG 60.428 61.111 0.00 0.00 38.30 5.18
64 65 3.024784 CATGTGTGTGTGCTGCGT 58.975 55.556 0.00 0.00 0.00 5.24
65 66 1.369568 CATGTGTGTGTGCTGCGTG 60.370 57.895 0.00 0.00 0.00 5.34
66 67 1.819208 ATGTGTGTGTGCTGCGTGT 60.819 52.632 0.00 0.00 0.00 4.49
67 68 2.023181 GTGTGTGTGCTGCGTGTG 59.977 61.111 0.00 0.00 0.00 3.82
68 69 3.201297 TGTGTGTGCTGCGTGTGG 61.201 61.111 0.00 0.00 0.00 4.17
69 70 3.952675 GTGTGTGCTGCGTGTGGG 61.953 66.667 0.00 0.00 0.00 4.61
70 71 4.481617 TGTGTGCTGCGTGTGGGT 62.482 61.111 0.00 0.00 0.00 4.51
71 72 3.649986 GTGTGCTGCGTGTGGGTC 61.650 66.667 0.00 0.00 0.00 4.46
86 87 4.034258 GTCGCCGACGGACACAGA 62.034 66.667 20.50 5.22 40.63 3.41
87 88 4.034258 TCGCCGACGGACACAGAC 62.034 66.667 20.50 0.00 40.63 3.51
90 91 4.415332 CCGACGGACACAGACGGG 62.415 72.222 8.64 0.00 41.71 5.28
91 92 3.359523 CGACGGACACAGACGGGA 61.360 66.667 0.00 0.00 0.00 5.14
92 93 2.567049 GACGGACACAGACGGGAG 59.433 66.667 0.00 0.00 0.00 4.30
93 94 3.628280 GACGGACACAGACGGGAGC 62.628 68.421 0.00 0.00 0.00 4.70
94 95 4.436998 CGGACACAGACGGGAGCC 62.437 72.222 0.00 0.00 0.00 4.70
95 96 3.311110 GGACACAGACGGGAGCCA 61.311 66.667 0.00 0.00 0.00 4.75
96 97 2.048127 GACACAGACGGGAGCCAC 60.048 66.667 0.00 0.00 0.00 5.01
97 98 3.916392 GACACAGACGGGAGCCACG 62.916 68.421 0.00 0.00 37.36 4.94
162 163 3.890674 GGATGTTCCGGTGTGAGC 58.109 61.111 0.00 0.00 0.00 4.26
163 164 2.100631 GGATGTTCCGGTGTGAGCG 61.101 63.158 0.00 0.00 39.06 5.03
164 165 2.740714 GATGTTCCGGTGTGAGCGC 61.741 63.158 0.00 0.00 37.85 5.92
179 180 4.696172 CGCGTCGTCCGTGCAAAC 62.696 66.667 0.00 0.00 40.62 2.93
180 181 3.632107 GCGTCGTCCGTGCAAACA 61.632 61.111 0.00 0.00 39.32 2.83
181 182 2.544359 CGTCGTCCGTGCAAACAG 59.456 61.111 0.00 0.00 0.00 3.16
182 183 2.248431 GTCGTCCGTGCAAACAGC 59.752 61.111 0.00 0.00 45.96 4.40
183 184 2.108157 TCGTCCGTGCAAACAGCT 59.892 55.556 0.00 0.00 45.94 4.24
184 185 1.954146 TCGTCCGTGCAAACAGCTC 60.954 57.895 0.00 0.00 45.94 4.09
189 190 3.649986 GTGCAAACAGCTCGGCGT 61.650 61.111 6.85 0.00 45.94 5.68
190 191 3.345808 TGCAAACAGCTCGGCGTC 61.346 61.111 6.85 0.00 45.94 5.19
191 192 4.090057 GCAAACAGCTCGGCGTCC 62.090 66.667 6.85 0.00 41.15 4.79
204 205 2.879907 CGTCCGGTTTCGCTAGGA 59.120 61.111 0.00 0.00 34.56 2.94
205 206 1.213537 CGTCCGGTTTCGCTAGGAA 59.786 57.895 0.00 0.00 34.17 3.36
206 207 1.074872 CGTCCGGTTTCGCTAGGAAC 61.075 60.000 0.00 0.00 33.42 3.62
207 208 1.074872 GTCCGGTTTCGCTAGGAACG 61.075 60.000 0.00 0.00 33.42 3.95
208 209 2.450345 CCGGTTTCGCTAGGAACGC 61.450 63.158 0.00 0.00 33.42 4.84
214 215 2.951745 CGCTAGGAACGCGCTCTG 60.952 66.667 5.73 0.00 44.33 3.35
215 216 3.258290 GCTAGGAACGCGCTCTGC 61.258 66.667 5.73 6.48 41.47 4.26
249 250 2.587194 CCAGCTTCGGCGAGATGG 60.587 66.667 22.30 22.30 45.67 3.51
290 291 3.730761 CTGCAACTGCGGCTCCAC 61.731 66.667 0.00 0.00 45.83 4.02
291 292 4.254709 TGCAACTGCGGCTCCACT 62.255 61.111 0.00 0.00 45.83 4.00
292 293 3.730761 GCAACTGCGGCTCCACTG 61.731 66.667 0.00 0.00 0.00 3.66
293 294 2.281070 CAACTGCGGCTCCACTGT 60.281 61.111 0.00 0.00 0.00 3.55
294 295 2.031163 AACTGCGGCTCCACTGTC 59.969 61.111 0.00 0.00 0.00 3.51
295 296 3.865929 AACTGCGGCTCCACTGTCG 62.866 63.158 0.00 0.00 0.00 4.35
299 300 4.803426 CGGCTCCACTGTCGCCTC 62.803 72.222 9.66 0.00 41.61 4.70
300 301 4.803426 GGCTCCACTGTCGCCTCG 62.803 72.222 5.34 0.00 40.62 4.63
301 302 4.803426 GCTCCACTGTCGCCTCGG 62.803 72.222 0.00 0.00 0.00 4.63
302 303 3.374402 CTCCACTGTCGCCTCGGT 61.374 66.667 0.00 0.00 0.00 4.69
303 304 3.343788 CTCCACTGTCGCCTCGGTC 62.344 68.421 0.00 0.00 0.00 4.79
304 305 3.374402 CCACTGTCGCCTCGGTCT 61.374 66.667 0.00 0.00 0.00 3.85
305 306 2.044555 CCACTGTCGCCTCGGTCTA 61.045 63.158 0.00 0.00 0.00 2.59
306 307 1.136984 CACTGTCGCCTCGGTCTAC 59.863 63.158 0.00 0.00 0.00 2.59
307 308 1.002379 ACTGTCGCCTCGGTCTACT 60.002 57.895 0.00 0.00 0.00 2.57
308 309 1.306642 ACTGTCGCCTCGGTCTACTG 61.307 60.000 0.00 0.00 0.00 2.74
309 310 1.994507 CTGTCGCCTCGGTCTACTGG 61.995 65.000 0.00 0.00 0.00 4.00
310 311 2.045131 GTCGCCTCGGTCTACTGGT 61.045 63.158 0.00 0.00 0.00 4.00
311 312 1.748122 TCGCCTCGGTCTACTGGTC 60.748 63.158 0.00 0.00 0.00 4.02
312 313 2.799371 GCCTCGGTCTACTGGTCG 59.201 66.667 0.00 0.00 0.00 4.79
313 314 2.799371 CCTCGGTCTACTGGTCGC 59.201 66.667 0.00 0.00 0.00 5.19
314 315 1.749638 CCTCGGTCTACTGGTCGCT 60.750 63.158 0.00 0.00 0.00 4.93
315 316 1.429825 CTCGGTCTACTGGTCGCTG 59.570 63.158 0.00 0.00 0.00 5.18
316 317 1.994507 CTCGGTCTACTGGTCGCTGG 61.995 65.000 0.00 0.00 0.00 4.85
317 318 2.893398 GGTCTACTGGTCGCTGGG 59.107 66.667 0.00 0.00 0.00 4.45
318 319 2.184579 GTCTACTGGTCGCTGGGC 59.815 66.667 0.00 0.00 0.00 5.36
342 343 4.899239 GCTGGCCCGTCGGAGATG 62.899 72.222 14.39 0.00 44.47 2.90
343 344 3.461773 CTGGCCCGTCGGAGATGT 61.462 66.667 14.39 0.00 43.09 3.06
344 345 2.043752 TGGCCCGTCGGAGATGTA 60.044 61.111 14.39 0.00 43.09 2.29
345 346 1.456892 TGGCCCGTCGGAGATGTAT 60.457 57.895 14.39 0.00 43.09 2.29
346 347 1.006102 GGCCCGTCGGAGATGTATG 60.006 63.158 14.39 0.00 43.09 2.39
347 348 1.461091 GGCCCGTCGGAGATGTATGA 61.461 60.000 14.39 0.00 43.09 2.15
348 349 0.387929 GCCCGTCGGAGATGTATGAA 59.612 55.000 14.39 0.00 43.09 2.57
349 350 1.202486 GCCCGTCGGAGATGTATGAAA 60.202 52.381 14.39 0.00 43.09 2.69
350 351 2.743938 CCCGTCGGAGATGTATGAAAG 58.256 52.381 14.39 0.00 43.09 2.62
351 352 2.361119 CCCGTCGGAGATGTATGAAAGA 59.639 50.000 14.39 0.00 43.09 2.52
352 353 3.372954 CCGTCGGAGATGTATGAAAGAC 58.627 50.000 4.91 0.00 43.09 3.01
353 354 3.066900 CCGTCGGAGATGTATGAAAGACT 59.933 47.826 4.91 0.00 43.09 3.24
354 355 4.440250 CCGTCGGAGATGTATGAAAGACTT 60.440 45.833 4.91 0.00 43.09 3.01
355 356 5.103000 CGTCGGAGATGTATGAAAGACTTT 58.897 41.667 0.00 0.00 40.67 2.66
356 357 5.004821 CGTCGGAGATGTATGAAAGACTTTG 59.995 44.000 4.85 0.00 40.67 2.77
357 358 5.869888 GTCGGAGATGTATGAAAGACTTTGT 59.130 40.000 4.85 0.00 40.67 2.83
358 359 7.033791 GTCGGAGATGTATGAAAGACTTTGTA 58.966 38.462 4.85 0.00 40.67 2.41
359 360 7.009357 GTCGGAGATGTATGAAAGACTTTGTAC 59.991 40.741 4.85 8.77 40.67 2.90
360 361 6.020599 CGGAGATGTATGAAAGACTTTGTACG 60.021 42.308 4.85 0.00 0.00 3.67
361 362 6.812160 GGAGATGTATGAAAGACTTTGTACGT 59.188 38.462 4.85 9.33 0.00 3.57
362 363 7.009357 GGAGATGTATGAAAGACTTTGTACGTC 59.991 40.741 21.33 21.33 32.27 4.34
363 364 6.527023 AGATGTATGAAAGACTTTGTACGTCG 59.473 38.462 21.93 0.00 34.65 5.12
364 365 4.919168 TGTATGAAAGACTTTGTACGTCGG 59.081 41.667 4.85 0.00 36.53 4.79
365 366 2.129607 TGAAAGACTTTGTACGTCGGC 58.870 47.619 4.85 0.00 36.53 5.54
366 367 2.223876 TGAAAGACTTTGTACGTCGGCT 60.224 45.455 4.85 0.00 36.53 5.52
367 368 3.004629 TGAAAGACTTTGTACGTCGGCTA 59.995 43.478 4.85 0.00 36.53 3.93
368 369 3.648339 AAGACTTTGTACGTCGGCTAA 57.352 42.857 0.00 0.00 36.53 3.09
369 370 3.863142 AGACTTTGTACGTCGGCTAAT 57.137 42.857 0.00 0.00 36.53 1.73
370 371 3.767278 AGACTTTGTACGTCGGCTAATC 58.233 45.455 0.00 0.00 36.53 1.75
371 372 2.523015 ACTTTGTACGTCGGCTAATCG 58.477 47.619 0.00 0.00 0.00 3.34
372 373 1.254570 CTTTGTACGTCGGCTAATCGC 59.745 52.381 0.00 0.00 38.13 4.58
373 374 0.170784 TTGTACGTCGGCTAATCGCA 59.829 50.000 0.00 0.00 41.67 5.10
374 375 0.382873 TGTACGTCGGCTAATCGCAT 59.617 50.000 0.00 0.00 41.67 4.73
375 376 1.050767 GTACGTCGGCTAATCGCATC 58.949 55.000 0.00 0.00 41.67 3.91
376 377 0.664224 TACGTCGGCTAATCGCATCA 59.336 50.000 0.00 0.00 41.67 3.07
377 378 0.032130 ACGTCGGCTAATCGCATCAT 59.968 50.000 0.00 0.00 41.67 2.45
378 379 1.139989 CGTCGGCTAATCGCATCATT 58.860 50.000 0.00 0.00 41.67 2.57
379 380 1.526887 CGTCGGCTAATCGCATCATTT 59.473 47.619 0.00 0.00 41.67 2.32
380 381 2.729360 CGTCGGCTAATCGCATCATTTA 59.271 45.455 0.00 0.00 41.67 1.40
381 382 3.367932 CGTCGGCTAATCGCATCATTTAT 59.632 43.478 0.00 0.00 41.67 1.40
382 383 4.143115 CGTCGGCTAATCGCATCATTTATT 60.143 41.667 0.00 0.00 41.67 1.40
383 384 5.614668 CGTCGGCTAATCGCATCATTTATTT 60.615 40.000 0.00 0.00 41.67 1.40
384 385 6.142817 GTCGGCTAATCGCATCATTTATTTT 58.857 36.000 0.00 0.00 41.67 1.82
385 386 6.303259 GTCGGCTAATCGCATCATTTATTTTC 59.697 38.462 0.00 0.00 41.67 2.29
386 387 6.017523 TCGGCTAATCGCATCATTTATTTTCA 60.018 34.615 0.00 0.00 41.67 2.69
387 388 6.636447 CGGCTAATCGCATCATTTATTTTCAA 59.364 34.615 0.00 0.00 41.67 2.69
388 389 7.167302 CGGCTAATCGCATCATTTATTTTCAAA 59.833 33.333 0.00 0.00 41.67 2.69
389 390 8.981647 GGCTAATCGCATCATTTATTTTCAAAT 58.018 29.630 0.00 0.00 41.67 2.32
406 407 6.874288 TTCAAATATTTTTGGCTTGGTTGG 57.126 33.333 8.51 0.00 42.10 3.77
407 408 4.759183 TCAAATATTTTTGGCTTGGTTGGC 59.241 37.500 8.51 0.00 42.10 4.52
408 409 4.639078 AATATTTTTGGCTTGGTTGGCT 57.361 36.364 0.00 0.00 0.00 4.75
409 410 2.259266 ATTTTTGGCTTGGTTGGCTG 57.741 45.000 0.00 0.00 0.00 4.85
410 411 0.908198 TTTTTGGCTTGGTTGGCTGT 59.092 45.000 0.00 0.00 0.00 4.40
411 412 0.908198 TTTTGGCTTGGTTGGCTGTT 59.092 45.000 0.00 0.00 0.00 3.16
412 413 0.463620 TTTGGCTTGGTTGGCTGTTC 59.536 50.000 0.00 0.00 0.00 3.18
413 414 1.733402 TTGGCTTGGTTGGCTGTTCG 61.733 55.000 0.00 0.00 0.00 3.95
414 415 2.193536 GGCTTGGTTGGCTGTTCGT 61.194 57.895 0.00 0.00 0.00 3.85
415 416 1.282875 GCTTGGTTGGCTGTTCGTC 59.717 57.895 0.00 0.00 0.00 4.20
416 417 1.949257 CTTGGTTGGCTGTTCGTCC 59.051 57.895 0.00 0.00 0.00 4.79
417 418 1.841663 CTTGGTTGGCTGTTCGTCCG 61.842 60.000 0.00 0.00 0.00 4.79
418 419 2.029964 GGTTGGCTGTTCGTCCGA 59.970 61.111 0.00 0.00 0.00 4.55
419 420 2.027625 GGTTGGCTGTTCGTCCGAG 61.028 63.158 0.00 0.00 0.00 4.63
420 421 2.357034 TTGGCTGTTCGTCCGAGC 60.357 61.111 0.00 0.00 0.00 5.03
424 425 3.691342 CTGTTCGTCCGAGCCCCA 61.691 66.667 1.12 0.00 0.00 4.96
425 426 3.649277 CTGTTCGTCCGAGCCCCAG 62.649 68.421 1.12 0.00 0.00 4.45
426 427 3.692406 GTTCGTCCGAGCCCCAGT 61.692 66.667 0.00 0.00 0.00 4.00
427 428 2.036098 TTCGTCCGAGCCCCAGTA 59.964 61.111 0.00 0.00 0.00 2.74
428 429 1.607178 TTCGTCCGAGCCCCAGTAA 60.607 57.895 0.00 0.00 0.00 2.24
429 430 1.186917 TTCGTCCGAGCCCCAGTAAA 61.187 55.000 0.00 0.00 0.00 2.01
430 431 1.153628 CGTCCGAGCCCCAGTAAAG 60.154 63.158 0.00 0.00 0.00 1.85
431 432 1.885163 CGTCCGAGCCCCAGTAAAGT 61.885 60.000 0.00 0.00 0.00 2.66
432 433 1.188863 GTCCGAGCCCCAGTAAAGTA 58.811 55.000 0.00 0.00 0.00 2.24
433 434 1.761198 GTCCGAGCCCCAGTAAAGTAT 59.239 52.381 0.00 0.00 0.00 2.12
434 435 1.760613 TCCGAGCCCCAGTAAAGTATG 59.239 52.381 0.00 0.00 0.00 2.39
435 436 1.485066 CCGAGCCCCAGTAAAGTATGT 59.515 52.381 0.00 0.00 0.00 2.29
436 437 2.483188 CCGAGCCCCAGTAAAGTATGTC 60.483 54.545 0.00 0.00 0.00 3.06
437 438 2.167693 CGAGCCCCAGTAAAGTATGTCA 59.832 50.000 0.00 0.00 0.00 3.58
438 439 3.369052 CGAGCCCCAGTAAAGTATGTCAA 60.369 47.826 0.00 0.00 0.00 3.18
439 440 4.683400 CGAGCCCCAGTAAAGTATGTCAAT 60.683 45.833 0.00 0.00 0.00 2.57
440 441 5.193099 AGCCCCAGTAAAGTATGTCAATT 57.807 39.130 0.00 0.00 0.00 2.32
441 442 5.193679 AGCCCCAGTAAAGTATGTCAATTC 58.806 41.667 0.00 0.00 0.00 2.17
442 443 5.044846 AGCCCCAGTAAAGTATGTCAATTCT 60.045 40.000 0.00 0.00 0.00 2.40
443 444 5.066505 GCCCCAGTAAAGTATGTCAATTCTG 59.933 44.000 0.00 0.00 0.00 3.02
444 445 5.066505 CCCCAGTAAAGTATGTCAATTCTGC 59.933 44.000 0.00 0.00 0.00 4.26
445 446 5.647658 CCCAGTAAAGTATGTCAATTCTGCA 59.352 40.000 0.00 0.00 0.00 4.41
446 447 6.403636 CCCAGTAAAGTATGTCAATTCTGCAC 60.404 42.308 0.00 0.00 0.00 4.57
447 448 6.243551 CAGTAAAGTATGTCAATTCTGCACG 58.756 40.000 0.00 0.00 0.00 5.34
448 449 6.090763 CAGTAAAGTATGTCAATTCTGCACGA 59.909 38.462 0.00 0.00 0.00 4.35
449 450 5.536554 AAAGTATGTCAATTCTGCACGAG 57.463 39.130 0.00 0.00 0.00 4.18
450 451 3.525537 AGTATGTCAATTCTGCACGAGG 58.474 45.455 0.00 0.00 0.00 4.63
451 452 2.768253 ATGTCAATTCTGCACGAGGA 57.232 45.000 0.00 0.00 0.00 3.71
452 453 2.084610 TGTCAATTCTGCACGAGGAG 57.915 50.000 0.00 0.00 33.99 3.69
453 454 1.344438 TGTCAATTCTGCACGAGGAGT 59.656 47.619 0.77 0.00 34.40 3.85
454 455 1.996191 GTCAATTCTGCACGAGGAGTC 59.004 52.381 0.77 0.00 34.40 3.36
455 456 1.066858 TCAATTCTGCACGAGGAGTCC 60.067 52.381 0.00 0.00 34.40 3.85
456 457 0.976641 AATTCTGCACGAGGAGTCCA 59.023 50.000 12.86 0.00 34.40 4.02
457 458 1.198713 ATTCTGCACGAGGAGTCCAT 58.801 50.000 12.86 0.00 34.40 3.41
458 459 0.532573 TTCTGCACGAGGAGTCCATC 59.467 55.000 12.86 5.30 34.40 3.51
459 460 1.226802 CTGCACGAGGAGTCCATCG 60.227 63.158 21.90 21.90 44.36 3.84
464 465 1.433879 CGAGGAGTCCATCGTGTCC 59.566 63.158 12.86 0.00 34.30 4.02
465 466 1.032657 CGAGGAGTCCATCGTGTCCT 61.033 60.000 12.86 0.00 42.38 3.85
466 467 1.187087 GAGGAGTCCATCGTGTCCTT 58.813 55.000 12.86 0.00 39.65 3.36
467 468 1.550976 GAGGAGTCCATCGTGTCCTTT 59.449 52.381 12.86 0.00 39.65 3.11
468 469 1.978580 AGGAGTCCATCGTGTCCTTTT 59.021 47.619 12.86 0.00 35.84 2.27
469 470 2.372172 AGGAGTCCATCGTGTCCTTTTT 59.628 45.455 12.86 0.00 35.84 1.94
470 471 2.742589 GGAGTCCATCGTGTCCTTTTTC 59.257 50.000 3.60 0.00 0.00 2.29
471 472 2.742589 GAGTCCATCGTGTCCTTTTTCC 59.257 50.000 0.00 0.00 0.00 3.13
472 473 2.105821 AGTCCATCGTGTCCTTTTTCCA 59.894 45.455 0.00 0.00 0.00 3.53
473 474 2.882137 GTCCATCGTGTCCTTTTTCCAA 59.118 45.455 0.00 0.00 0.00 3.53
474 475 3.506067 GTCCATCGTGTCCTTTTTCCAAT 59.494 43.478 0.00 0.00 0.00 3.16
475 476 3.756434 TCCATCGTGTCCTTTTTCCAATC 59.244 43.478 0.00 0.00 0.00 2.67
476 477 3.426159 CCATCGTGTCCTTTTTCCAATCG 60.426 47.826 0.00 0.00 0.00 3.34
477 478 2.147958 TCGTGTCCTTTTTCCAATCGG 58.852 47.619 0.00 0.00 0.00 4.18
478 479 2.147958 CGTGTCCTTTTTCCAATCGGA 58.852 47.619 0.00 0.00 40.60 4.55
479 480 2.159627 CGTGTCCTTTTTCCAATCGGAG 59.840 50.000 0.00 0.00 44.10 4.63
480 481 2.095212 GTGTCCTTTTTCCAATCGGAGC 60.095 50.000 0.00 0.00 44.10 4.70
481 482 2.224769 TGTCCTTTTTCCAATCGGAGCT 60.225 45.455 0.00 0.00 44.10 4.09
482 483 3.008594 TGTCCTTTTTCCAATCGGAGCTA 59.991 43.478 0.00 0.00 44.10 3.32
483 484 4.200092 GTCCTTTTTCCAATCGGAGCTAT 58.800 43.478 0.00 0.00 44.10 2.97
484 485 5.104693 TGTCCTTTTTCCAATCGGAGCTATA 60.105 40.000 0.00 0.00 44.10 1.31
485 486 5.998363 GTCCTTTTTCCAATCGGAGCTATAT 59.002 40.000 0.00 0.00 44.10 0.86
486 487 5.997746 TCCTTTTTCCAATCGGAGCTATATG 59.002 40.000 0.00 0.00 44.10 1.78
487 488 5.765182 CCTTTTTCCAATCGGAGCTATATGT 59.235 40.000 0.00 0.00 44.10 2.29
488 489 6.934645 CCTTTTTCCAATCGGAGCTATATGTA 59.065 38.462 0.00 0.00 44.10 2.29
489 490 7.607991 CCTTTTTCCAATCGGAGCTATATGTAT 59.392 37.037 0.00 0.00 44.10 2.29
490 491 9.653287 CTTTTTCCAATCGGAGCTATATGTATA 57.347 33.333 0.00 0.00 44.10 1.47
491 492 8.997621 TTTTCCAATCGGAGCTATATGTATAC 57.002 34.615 0.00 0.00 44.10 1.47
492 493 7.956328 TTCCAATCGGAGCTATATGTATACT 57.044 36.000 4.17 0.00 44.10 2.12
493 494 9.470399 TTTCCAATCGGAGCTATATGTATACTA 57.530 33.333 4.17 0.00 44.10 1.82
494 495 8.447924 TCCAATCGGAGCTATATGTATACTAC 57.552 38.462 4.17 0.00 35.91 2.73
495 496 8.272889 TCCAATCGGAGCTATATGTATACTACT 58.727 37.037 4.17 0.00 35.91 2.57
496 497 8.561212 CCAATCGGAGCTATATGTATACTACTC 58.439 40.741 4.17 2.43 0.00 2.59
497 498 9.332502 CAATCGGAGCTATATGTATACTACTCT 57.667 37.037 4.17 0.00 0.00 3.24
498 499 9.908747 AATCGGAGCTATATGTATACTACTCTT 57.091 33.333 4.17 0.00 0.00 2.85
510 511 8.867112 TGTATACTACTCTTAAATTTCAGCCG 57.133 34.615 4.17 0.00 0.00 5.52
511 512 8.472413 TGTATACTACTCTTAAATTTCAGCCGT 58.528 33.333 4.17 0.00 0.00 5.68
512 513 8.966194 GTATACTACTCTTAAATTTCAGCCGTC 58.034 37.037 0.00 0.00 0.00 4.79
513 514 5.790593 ACTACTCTTAAATTTCAGCCGTCA 58.209 37.500 0.00 0.00 0.00 4.35
514 515 6.228258 ACTACTCTTAAATTTCAGCCGTCAA 58.772 36.000 0.00 0.00 0.00 3.18
515 516 6.879458 ACTACTCTTAAATTTCAGCCGTCAAT 59.121 34.615 0.00 0.00 0.00 2.57
516 517 6.183309 ACTCTTAAATTTCAGCCGTCAATC 57.817 37.500 0.00 0.00 0.00 2.67
517 518 5.940470 ACTCTTAAATTTCAGCCGTCAATCT 59.060 36.000 0.00 0.00 0.00 2.40
518 519 6.431234 ACTCTTAAATTTCAGCCGTCAATCTT 59.569 34.615 0.00 0.00 0.00 2.40
519 520 7.040409 ACTCTTAAATTTCAGCCGTCAATCTTT 60.040 33.333 0.00 0.00 0.00 2.52
520 521 8.330466 TCTTAAATTTCAGCCGTCAATCTTTA 57.670 30.769 0.00 0.00 0.00 1.85
521 522 8.956426 TCTTAAATTTCAGCCGTCAATCTTTAT 58.044 29.630 0.00 0.00 0.00 1.40
522 523 8.909708 TTAAATTTCAGCCGTCAATCTTTATG 57.090 30.769 0.00 0.00 0.00 1.90
523 524 4.963276 TTTCAGCCGTCAATCTTTATGG 57.037 40.909 0.00 0.00 0.00 2.74
524 525 3.627395 TCAGCCGTCAATCTTTATGGT 57.373 42.857 0.00 0.00 0.00 3.55
525 526 3.950397 TCAGCCGTCAATCTTTATGGTT 58.050 40.909 0.00 0.00 0.00 3.67
526 527 5.092554 TCAGCCGTCAATCTTTATGGTTA 57.907 39.130 0.00 0.00 0.00 2.85
527 528 5.492895 TCAGCCGTCAATCTTTATGGTTAA 58.507 37.500 0.00 0.00 0.00 2.01
528 529 6.119536 TCAGCCGTCAATCTTTATGGTTAAT 58.880 36.000 0.00 0.00 0.00 1.40
529 530 7.276658 TCAGCCGTCAATCTTTATGGTTAATA 58.723 34.615 0.00 0.00 0.00 0.98
530 531 7.936847 TCAGCCGTCAATCTTTATGGTTAATAT 59.063 33.333 0.00 0.00 0.00 1.28
531 532 9.214957 CAGCCGTCAATCTTTATGGTTAATATA 57.785 33.333 0.00 0.00 0.00 0.86
532 533 9.787435 AGCCGTCAATCTTTATGGTTAATATAA 57.213 29.630 0.00 0.00 0.00 0.98
581 582 9.855021 ACTTATGAAAAACCATAAAATCTTCCG 57.145 29.630 0.00 0.00 38.21 4.30
582 583 9.855021 CTTATGAAAAACCATAAAATCTTCCGT 57.145 29.630 0.00 0.00 38.21 4.69
583 584 9.849166 TTATGAAAAACCATAAAATCTTCCGTC 57.151 29.630 0.00 0.00 36.42 4.79
584 585 6.683715 TGAAAAACCATAAAATCTTCCGTCC 58.316 36.000 0.00 0.00 0.00 4.79
585 586 6.492087 TGAAAAACCATAAAATCTTCCGTCCT 59.508 34.615 0.00 0.00 0.00 3.85
586 587 6.911250 AAAACCATAAAATCTTCCGTCCTT 57.089 33.333 0.00 0.00 0.00 3.36
587 588 6.911250 AAACCATAAAATCTTCCGTCCTTT 57.089 33.333 0.00 0.00 0.00 3.11
588 589 8.411991 AAAACCATAAAATCTTCCGTCCTTTA 57.588 30.769 0.00 0.00 0.00 1.85
589 590 8.589701 AAACCATAAAATCTTCCGTCCTTTAT 57.410 30.769 0.00 0.00 0.00 1.40
590 591 8.589701 AACCATAAAATCTTCCGTCCTTTATT 57.410 30.769 0.00 0.00 0.00 1.40
591 592 9.689501 AACCATAAAATCTTCCGTCCTTTATTA 57.310 29.630 0.00 0.00 0.00 0.98
592 593 9.862149 ACCATAAAATCTTCCGTCCTTTATTAT 57.138 29.630 0.00 0.00 0.00 1.28
623 624 5.661458 AGATTATAGTACATATGCCCGTGC 58.339 41.667 1.58 0.00 38.26 5.34
624 625 2.363788 ATAGTACATATGCCCGTGCG 57.636 50.000 1.58 0.00 41.78 5.34
625 626 1.034356 TAGTACATATGCCCGTGCGT 58.966 50.000 1.58 0.00 41.78 5.24
626 627 0.177141 AGTACATATGCCCGTGCGTT 59.823 50.000 1.58 0.00 41.78 4.84
627 628 0.303493 GTACATATGCCCGTGCGTTG 59.697 55.000 1.58 0.00 41.78 4.10
628 629 1.433053 TACATATGCCCGTGCGTTGC 61.433 55.000 1.58 0.00 41.78 4.17
629 630 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
630 631 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
631 632 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
633 634 4.980903 GCCCGTGCGTTGCAACAG 62.981 66.667 28.01 20.60 41.47 3.16
634 635 4.326766 CCCGTGCGTTGCAACAGG 62.327 66.667 28.01 22.31 41.47 4.00
635 636 3.276091 CCGTGCGTTGCAACAGGA 61.276 61.111 28.01 18.68 41.47 3.86
636 637 2.712539 CGTGCGTTGCAACAGGAA 59.287 55.556 28.01 5.70 41.47 3.36
637 638 1.063327 CGTGCGTTGCAACAGGAAA 59.937 52.632 28.01 6.49 41.47 3.13
638 639 0.929824 CGTGCGTTGCAACAGGAAAG 60.930 55.000 28.01 12.38 41.47 2.62
639 640 0.380378 GTGCGTTGCAACAGGAAAGA 59.620 50.000 28.01 1.65 41.47 2.52
640 641 1.098869 TGCGTTGCAACAGGAAAGAA 58.901 45.000 28.01 3.40 34.76 2.52
641 642 1.474478 TGCGTTGCAACAGGAAAGAAA 59.526 42.857 28.01 1.67 34.76 2.52
642 643 2.094494 TGCGTTGCAACAGGAAAGAAAA 60.094 40.909 28.01 0.00 34.76 2.29
643 644 3.123050 GCGTTGCAACAGGAAAGAAAAT 58.877 40.909 28.01 0.00 0.00 1.82
644 645 3.555547 GCGTTGCAACAGGAAAGAAAATT 59.444 39.130 28.01 0.00 0.00 1.82
645 646 4.742659 GCGTTGCAACAGGAAAGAAAATTA 59.257 37.500 28.01 0.00 0.00 1.40
646 647 5.107875 GCGTTGCAACAGGAAAGAAAATTAG 60.108 40.000 28.01 7.85 0.00 1.73
647 648 5.402270 CGTTGCAACAGGAAAGAAAATTAGG 59.598 40.000 28.01 2.81 0.00 2.69
648 649 5.467035 TGCAACAGGAAAGAAAATTAGGG 57.533 39.130 0.00 0.00 0.00 3.53
649 650 4.898861 TGCAACAGGAAAGAAAATTAGGGT 59.101 37.500 0.00 0.00 0.00 4.34
650 651 5.365314 TGCAACAGGAAAGAAAATTAGGGTT 59.635 36.000 0.00 0.00 0.00 4.11
651 652 6.551601 TGCAACAGGAAAGAAAATTAGGGTTA 59.448 34.615 0.00 0.00 0.00 2.85
652 653 7.234577 TGCAACAGGAAAGAAAATTAGGGTTAT 59.765 33.333 0.00 0.00 0.00 1.89
653 654 7.545615 GCAACAGGAAAGAAAATTAGGGTTATG 59.454 37.037 0.00 0.00 0.00 1.90
654 655 8.585018 CAACAGGAAAGAAAATTAGGGTTATGT 58.415 33.333 0.00 0.00 0.00 2.29
655 656 8.122472 ACAGGAAAGAAAATTAGGGTTATGTG 57.878 34.615 0.00 0.00 0.00 3.21
656 657 7.035612 CAGGAAAGAAAATTAGGGTTATGTGC 58.964 38.462 0.00 0.00 0.00 4.57
657 658 6.723977 AGGAAAGAAAATTAGGGTTATGTGCA 59.276 34.615 0.00 0.00 0.00 4.57
658 659 7.234577 AGGAAAGAAAATTAGGGTTATGTGCAA 59.765 33.333 0.00 0.00 0.00 4.08
659 660 8.040727 GGAAAGAAAATTAGGGTTATGTGCAAT 58.959 33.333 0.00 0.00 0.00 3.56
660 661 9.087424 GAAAGAAAATTAGGGTTATGTGCAATC 57.913 33.333 0.00 0.00 0.00 2.67
661 662 7.716799 AGAAAATTAGGGTTATGTGCAATCA 57.283 32.000 0.00 0.00 0.00 2.57
662 663 7.547227 AGAAAATTAGGGTTATGTGCAATCAC 58.453 34.615 0.00 0.00 43.40 3.06
675 676 5.565592 GTGCAATCACAATGGTTCATAGA 57.434 39.130 0.00 0.00 42.66 1.98
676 677 5.953183 GTGCAATCACAATGGTTCATAGAA 58.047 37.500 0.00 0.00 42.66 2.10
677 678 6.389091 GTGCAATCACAATGGTTCATAGAAA 58.611 36.000 0.00 0.00 42.66 2.52
678 679 6.308766 GTGCAATCACAATGGTTCATAGAAAC 59.691 38.462 0.00 0.00 42.66 2.78
679 680 5.512788 GCAATCACAATGGTTCATAGAAACG 59.487 40.000 0.00 0.00 0.00 3.60
680 681 4.678509 TCACAATGGTTCATAGAAACGC 57.321 40.909 0.00 0.00 0.00 4.84
681 682 4.323417 TCACAATGGTTCATAGAAACGCT 58.677 39.130 0.00 0.00 0.00 5.07
682 683 5.483811 TCACAATGGTTCATAGAAACGCTA 58.516 37.500 0.00 0.00 0.00 4.26
683 684 5.580691 TCACAATGGTTCATAGAAACGCTAG 59.419 40.000 0.00 0.00 31.33 3.42
684 685 5.351465 CACAATGGTTCATAGAAACGCTAGT 59.649 40.000 0.00 0.00 31.33 2.57
685 686 5.938125 ACAATGGTTCATAGAAACGCTAGTT 59.062 36.000 0.00 0.00 43.50 2.24
686 687 6.128282 ACAATGGTTCATAGAAACGCTAGTTG 60.128 38.462 0.00 0.00 41.05 3.16
687 688 4.890088 TGGTTCATAGAAACGCTAGTTGT 58.110 39.130 0.00 0.00 41.05 3.32
688 689 4.927425 TGGTTCATAGAAACGCTAGTTGTC 59.073 41.667 0.00 0.00 41.05 3.18
689 690 4.329256 GGTTCATAGAAACGCTAGTTGTCC 59.671 45.833 0.00 0.00 41.05 4.02
690 691 4.119442 TCATAGAAACGCTAGTTGTCCC 57.881 45.455 0.00 0.00 41.05 4.46
691 692 3.512329 TCATAGAAACGCTAGTTGTCCCA 59.488 43.478 0.00 0.00 41.05 4.37
692 693 2.165319 AGAAACGCTAGTTGTCCCAC 57.835 50.000 0.00 0.00 41.05 4.61
693 694 1.154197 GAAACGCTAGTTGTCCCACC 58.846 55.000 0.00 0.00 41.05 4.61
694 695 0.250597 AAACGCTAGTTGTCCCACCC 60.251 55.000 0.00 0.00 41.05 4.61
695 696 1.412453 AACGCTAGTTGTCCCACCCA 61.412 55.000 0.00 0.00 39.48 4.51
696 697 1.198759 ACGCTAGTTGTCCCACCCAT 61.199 55.000 0.00 0.00 0.00 4.00
697 698 0.828022 CGCTAGTTGTCCCACCCATA 59.172 55.000 0.00 0.00 0.00 2.74
703 704 5.013183 GCTAGTTGTCCCACCCATATATCTT 59.987 44.000 0.00 0.00 0.00 2.40
724 725 8.953368 ATCTTTACCTACTAATAAACCAACGG 57.047 34.615 0.00 0.00 0.00 4.44
726 727 7.818930 TCTTTACCTACTAATAAACCAACGGTG 59.181 37.037 0.00 0.00 35.34 4.94
727 728 5.743636 ACCTACTAATAAACCAACGGTGA 57.256 39.130 0.00 0.00 35.34 4.02
728 729 5.727434 ACCTACTAATAAACCAACGGTGAG 58.273 41.667 0.00 0.00 35.34 3.51
729 730 4.569564 CCTACTAATAAACCAACGGTGAGC 59.430 45.833 0.00 0.00 35.34 4.26
730 731 2.997986 ACTAATAAACCAACGGTGAGCG 59.002 45.455 0.00 1.13 35.34 5.03
731 732 0.519961 AATAAACCAACGGTGAGCGC 59.480 50.000 0.00 0.00 35.34 5.92
813 823 7.312899 CCGCAGTCCTTTTTAAGTCATTAAAT 58.687 34.615 0.00 0.00 39.87 1.40
841 851 4.271590 ACCATTTCGTTTTTGCAAAAGC 57.728 36.364 24.05 24.05 0.00 3.51
855 866 3.954904 TGCAAAAGCAACCCTGTACTTTA 59.045 39.130 0.00 0.00 32.28 1.85
894 905 6.201425 GCGGTCCATACGTCTGATTTTATTAA 59.799 38.462 1.95 0.00 0.00 1.40
913 948 9.443323 TTTATTAATTGAGAACGGATCAACTCA 57.557 29.630 0.00 0.00 39.36 3.41
936 998 3.618780 CTCGAGCTTGCAGGGGCTT 62.619 63.158 0.00 0.00 41.91 4.35
1226 1288 1.137404 GCCTAATTGTGGCGTGCAG 59.863 57.895 8.25 0.00 41.03 4.41
1260 1324 0.178932 CCATCCTCCTACCCATCCGA 60.179 60.000 0.00 0.00 0.00 4.55
1525 1589 6.530887 TGCATCCATGATTATTTGTTTCAACG 59.469 34.615 0.00 0.00 0.00 4.10
1658 1722 1.663695 CGCAGGTTGGTACTTATGGG 58.336 55.000 0.00 0.00 0.00 4.00
1737 2230 4.936685 AGAAGCCTTTTGATTAGGAGGT 57.063 40.909 0.00 0.00 34.56 3.85
1860 2356 0.034863 ACGGTGTGTGGAACCAGTTT 60.035 50.000 0.00 0.00 37.57 2.66
1861 2357 0.380378 CGGTGTGTGGAACCAGTTTG 59.620 55.000 0.00 0.00 37.57 2.93
1862 2358 0.744281 GGTGTGTGGAACCAGTTTGG 59.256 55.000 0.00 0.00 45.02 3.28
1877 2373 5.846203 CCAGTTTGGTTCATTTCATCTTGT 58.154 37.500 0.00 0.00 31.35 3.16
1878 2374 6.282930 CCAGTTTGGTTCATTTCATCTTGTT 58.717 36.000 0.00 0.00 31.35 2.83
1879 2375 6.762661 CCAGTTTGGTTCATTTCATCTTGTTT 59.237 34.615 0.00 0.00 31.35 2.83
1880 2376 7.254522 CCAGTTTGGTTCATTTCATCTTGTTTG 60.255 37.037 0.00 0.00 31.35 2.93
1881 2377 7.278424 CAGTTTGGTTCATTTCATCTTGTTTGT 59.722 33.333 0.00 0.00 0.00 2.83
1882 2378 7.823799 AGTTTGGTTCATTTCATCTTGTTTGTT 59.176 29.630 0.00 0.00 0.00 2.83
1883 2379 7.536895 TTGGTTCATTTCATCTTGTTTGTTG 57.463 32.000 0.00 0.00 0.00 3.33
1884 2380 6.871844 TGGTTCATTTCATCTTGTTTGTTGA 58.128 32.000 0.00 0.00 0.00 3.18
1885 2381 6.756074 TGGTTCATTTCATCTTGTTTGTTGAC 59.244 34.615 0.00 0.00 0.00 3.18
1886 2382 6.756074 GGTTCATTTCATCTTGTTTGTTGACA 59.244 34.615 0.00 0.00 0.00 3.58
1887 2383 7.439056 GGTTCATTTCATCTTGTTTGTTGACAT 59.561 33.333 0.00 0.00 0.00 3.06
1888 2384 8.819974 GTTCATTTCATCTTGTTTGTTGACATT 58.180 29.630 0.00 0.00 0.00 2.71
1889 2385 8.355272 TCATTTCATCTTGTTTGTTGACATTG 57.645 30.769 0.00 0.00 0.00 2.82
1890 2386 8.196103 TCATTTCATCTTGTTTGTTGACATTGA 58.804 29.630 0.00 0.00 0.00 2.57
1891 2387 8.984764 CATTTCATCTTGTTTGTTGACATTGAT 58.015 29.630 0.00 0.00 0.00 2.57
1892 2388 7.933728 TTCATCTTGTTTGTTGACATTGATG 57.066 32.000 11.68 11.68 39.49 3.07
1893 2389 6.448852 TCATCTTGTTTGTTGACATTGATGG 58.551 36.000 15.05 0.00 39.11 3.51
1894 2390 5.850557 TCTTGTTTGTTGACATTGATGGT 57.149 34.783 0.00 0.00 0.00 3.55
1895 2391 5.590145 TCTTGTTTGTTGACATTGATGGTG 58.410 37.500 0.00 0.00 0.00 4.17
1896 2392 4.998671 TGTTTGTTGACATTGATGGTGT 57.001 36.364 0.00 0.00 0.00 4.16
1897 2393 5.336150 TGTTTGTTGACATTGATGGTGTT 57.664 34.783 0.00 0.00 0.00 3.32
1898 2394 5.107824 TGTTTGTTGACATTGATGGTGTTG 58.892 37.500 0.00 0.00 0.00 3.33
1899 2395 4.998671 TTGTTGACATTGATGGTGTTGT 57.001 36.364 0.00 0.00 0.00 3.32
1900 2396 4.566545 TGTTGACATTGATGGTGTTGTC 57.433 40.909 0.00 0.00 39.11 3.18
1901 2397 3.317711 TGTTGACATTGATGGTGTTGTCC 59.682 43.478 0.00 0.00 38.12 4.02
1902 2398 3.220674 TGACATTGATGGTGTTGTCCA 57.779 42.857 0.00 0.00 42.01 4.02
1904 2400 4.151121 TGACATTGATGGTGTTGTCCATT 58.849 39.130 0.00 0.00 46.72 3.16
1905 2401 4.022155 TGACATTGATGGTGTTGTCCATTG 60.022 41.667 0.00 0.00 46.72 2.82
1906 2402 3.258872 ACATTGATGGTGTTGTCCATTGG 59.741 43.478 0.00 0.00 46.72 3.16
1907 2403 2.673775 TGATGGTGTTGTCCATTGGT 57.326 45.000 1.86 0.00 46.72 3.67
1908 2404 2.956132 TGATGGTGTTGTCCATTGGTT 58.044 42.857 1.86 0.00 46.72 3.67
1909 2405 3.303938 TGATGGTGTTGTCCATTGGTTT 58.696 40.909 1.86 0.00 46.72 3.27
1910 2406 4.474394 TGATGGTGTTGTCCATTGGTTTA 58.526 39.130 1.86 0.00 46.72 2.01
1911 2407 4.895889 TGATGGTGTTGTCCATTGGTTTAA 59.104 37.500 1.86 0.00 46.72 1.52
1912 2408 4.657436 TGGTGTTGTCCATTGGTTTAAC 57.343 40.909 1.86 7.40 31.96 2.01
1913 2409 4.023980 TGGTGTTGTCCATTGGTTTAACA 58.976 39.130 13.93 13.93 31.96 2.41
1914 2410 4.098654 TGGTGTTGTCCATTGGTTTAACAG 59.901 41.667 16.60 0.00 31.96 3.16
1915 2411 4.339814 GGTGTTGTCCATTGGTTTAACAGA 59.660 41.667 16.60 0.00 0.00 3.41
1916 2412 5.163499 GGTGTTGTCCATTGGTTTAACAGAA 60.163 40.000 16.60 0.00 0.00 3.02
1917 2413 6.334202 GTGTTGTCCATTGGTTTAACAGAAA 58.666 36.000 16.60 0.00 0.00 2.52
1918 2414 6.983890 GTGTTGTCCATTGGTTTAACAGAAAT 59.016 34.615 16.60 0.00 0.00 2.17
1919 2415 7.494298 GTGTTGTCCATTGGTTTAACAGAAATT 59.506 33.333 16.60 0.00 0.00 1.82
1920 2416 8.043710 TGTTGTCCATTGGTTTAACAGAAATTT 58.956 29.630 13.93 0.00 0.00 1.82
1921 2417 8.888716 GTTGTCCATTGGTTTAACAGAAATTTT 58.111 29.630 1.86 0.00 0.00 1.82
2152 2650 2.901192 TCGGTGGATTGTTTCTGGTAGA 59.099 45.455 0.00 0.00 0.00 2.59
2156 2654 3.686726 GTGGATTGTTTCTGGTAGAGCTG 59.313 47.826 0.00 0.00 0.00 4.24
2187 2685 6.881065 TCTGTGAAGGTAAGATTTTGATCCAG 59.119 38.462 0.00 0.00 0.00 3.86
2319 2819 2.593346 AAACTCATGCTCTAGCGGAG 57.407 50.000 17.09 17.09 45.01 4.63
2391 2892 4.478206 AGCTCTTGCATGACTTTAGCTA 57.522 40.909 10.41 0.00 42.74 3.32
2431 2932 2.887152 CTGTTCAGGTTTTCTTCCCCAG 59.113 50.000 0.00 0.00 0.00 4.45
2468 2969 5.292765 CCACATGTCAGATGGTGATAGTAC 58.707 45.833 0.00 0.00 37.56 2.73
2506 3007 5.768317 ACAAAAACATAAGATGTGTTCCCG 58.232 37.500 0.00 0.00 44.07 5.14
2606 3107 5.010012 CCACAAGCTTCTGTAGGTTCAAATT 59.990 40.000 0.00 0.00 42.49 1.82
2880 3463 6.713762 TGATCATAACCTTGGCTTAAATGG 57.286 37.500 0.00 0.00 0.00 3.16
2883 3466 7.398618 TGATCATAACCTTGGCTTAAATGGAAA 59.601 33.333 0.00 0.00 0.00 3.13
3047 3639 4.563168 GCCAATTCACAATGACCATTCCAA 60.563 41.667 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.752436 CGTGGGTCTGAGAGCTCCTAT 60.752 57.143 10.93 0.00 0.00 2.57
1 2 0.394488 CGTGGGTCTGAGAGCTCCTA 60.394 60.000 10.93 0.00 0.00 2.94
2 3 1.680651 CGTGGGTCTGAGAGCTCCT 60.681 63.158 10.93 0.00 0.00 3.69
3 4 0.680280 TACGTGGGTCTGAGAGCTCC 60.680 60.000 10.93 2.40 0.00 4.70
4 5 1.066303 CATACGTGGGTCTGAGAGCTC 59.934 57.143 11.79 5.27 0.00 4.09
6 7 0.818296 ACATACGTGGGTCTGAGAGC 59.182 55.000 2.44 2.44 0.00 4.09
8 9 1.067142 GCAACATACGTGGGTCTGAGA 60.067 52.381 0.00 0.00 0.00 3.27
9 10 1.066858 AGCAACATACGTGGGTCTGAG 60.067 52.381 0.00 0.00 0.00 3.35
10 11 0.973632 AGCAACATACGTGGGTCTGA 59.026 50.000 0.00 0.00 0.00 3.27
11 12 1.078709 CAGCAACATACGTGGGTCTG 58.921 55.000 0.00 0.00 0.00 3.51
12 13 0.673644 GCAGCAACATACGTGGGTCT 60.674 55.000 0.00 0.00 0.00 3.85
13 14 0.673644 AGCAGCAACATACGTGGGTC 60.674 55.000 0.00 0.00 0.00 4.46
14 15 0.955428 CAGCAGCAACATACGTGGGT 60.955 55.000 0.00 0.00 0.00 4.51
15 16 1.796151 CAGCAGCAACATACGTGGG 59.204 57.895 0.00 0.00 0.00 4.61
16 17 1.135315 GCAGCAGCAACATACGTGG 59.865 57.895 0.00 0.00 41.58 4.94
17 18 1.225827 CGCAGCAGCAACATACGTG 60.226 57.895 0.00 0.00 42.27 4.49
18 19 1.667830 ACGCAGCAGCAACATACGT 60.668 52.632 0.82 0.00 42.27 3.57
19 20 1.225827 CACGCAGCAGCAACATACG 60.226 57.895 0.82 0.00 42.27 3.06
20 21 1.512734 GCACGCAGCAGCAACATAC 60.513 57.895 0.82 0.00 44.79 2.39
21 22 2.869646 GCACGCAGCAGCAACATA 59.130 55.556 0.82 0.00 44.79 2.29
38 39 2.045586 CACACACACATGCAAATCGTG 58.954 47.619 0.00 0.00 37.70 4.35
39 40 1.600164 GCACACACACATGCAAATCGT 60.600 47.619 0.00 0.00 41.65 3.73
40 41 1.054574 GCACACACACATGCAAATCG 58.945 50.000 0.00 0.00 41.65 3.34
41 42 2.055838 CAGCACACACACATGCAAATC 58.944 47.619 0.00 0.00 44.59 2.17
42 43 1.870580 GCAGCACACACACATGCAAAT 60.871 47.619 0.00 0.00 44.59 2.32
43 44 0.528033 GCAGCACACACACATGCAAA 60.528 50.000 0.00 0.00 44.59 3.68
44 45 1.066093 GCAGCACACACACATGCAA 59.934 52.632 0.00 0.00 44.59 4.08
45 46 2.723116 GCAGCACACACACATGCA 59.277 55.556 0.00 0.00 44.59 3.96
46 47 2.427905 CGCAGCACACACACATGC 60.428 61.111 0.00 0.00 42.39 4.06
47 48 1.369568 CACGCAGCACACACACATG 60.370 57.895 0.00 0.00 0.00 3.21
48 49 1.819208 ACACGCAGCACACACACAT 60.819 52.632 0.00 0.00 0.00 3.21
49 50 2.435762 ACACGCAGCACACACACA 60.436 55.556 0.00 0.00 0.00 3.72
50 51 2.023181 CACACGCAGCACACACAC 59.977 61.111 0.00 0.00 0.00 3.82
51 52 3.201297 CCACACGCAGCACACACA 61.201 61.111 0.00 0.00 0.00 3.72
52 53 3.952675 CCCACACGCAGCACACAC 61.953 66.667 0.00 0.00 0.00 3.82
53 54 4.481617 ACCCACACGCAGCACACA 62.482 61.111 0.00 0.00 0.00 3.72
54 55 3.649986 GACCCACACGCAGCACAC 61.650 66.667 0.00 0.00 0.00 3.82
69 70 4.034258 TCTGTGTCCGTCGGCGAC 62.034 66.667 29.06 29.06 41.33 5.19
70 71 4.034258 GTCTGTGTCCGTCGGCGA 62.034 66.667 12.93 4.99 41.33 5.54
73 74 4.415332 CCCGTCTGTGTCCGTCGG 62.415 72.222 4.39 4.39 40.72 4.79
74 75 3.324099 CTCCCGTCTGTGTCCGTCG 62.324 68.421 0.00 0.00 0.00 5.12
75 76 2.567049 CTCCCGTCTGTGTCCGTC 59.433 66.667 0.00 0.00 0.00 4.79
76 77 3.681835 GCTCCCGTCTGTGTCCGT 61.682 66.667 0.00 0.00 0.00 4.69
77 78 4.436998 GGCTCCCGTCTGTGTCCG 62.437 72.222 0.00 0.00 0.00 4.79
78 79 3.311110 TGGCTCCCGTCTGTGTCC 61.311 66.667 0.00 0.00 0.00 4.02
79 80 2.048127 GTGGCTCCCGTCTGTGTC 60.048 66.667 0.00 0.00 0.00 3.67
80 81 3.991051 CGTGGCTCCCGTCTGTGT 61.991 66.667 0.00 0.00 0.00 3.72
145 146 2.100631 CGCTCACACCGGAACATCC 61.101 63.158 9.46 0.00 0.00 3.51
146 147 2.740714 GCGCTCACACCGGAACATC 61.741 63.158 9.46 0.00 0.00 3.06
147 148 2.742372 GCGCTCACACCGGAACAT 60.742 61.111 9.46 0.00 0.00 2.71
165 166 2.159272 GAGCTGTTTGCACGGACGAC 62.159 60.000 0.00 0.00 45.94 4.34
166 167 1.954146 GAGCTGTTTGCACGGACGA 60.954 57.895 0.00 0.00 45.94 4.20
167 168 2.551270 GAGCTGTTTGCACGGACG 59.449 61.111 0.00 0.00 45.94 4.79
172 173 3.579626 GACGCCGAGCTGTTTGCAC 62.580 63.158 0.00 0.00 45.94 4.57
173 174 3.345808 GACGCCGAGCTGTTTGCA 61.346 61.111 0.00 0.00 45.94 4.08
174 175 4.090057 GGACGCCGAGCTGTTTGC 62.090 66.667 0.00 0.00 43.29 3.68
187 188 1.074872 GTTCCTAGCGAAACCGGACG 61.075 60.000 9.46 12.35 30.39 4.79
188 189 1.074872 CGTTCCTAGCGAAACCGGAC 61.075 60.000 9.46 0.00 30.39 4.79
189 190 1.213537 CGTTCCTAGCGAAACCGGA 59.786 57.895 9.46 0.00 30.39 5.14
190 191 2.450345 GCGTTCCTAGCGAAACCGG 61.450 63.158 0.00 0.00 30.39 5.28
191 192 3.078560 GCGTTCCTAGCGAAACCG 58.921 61.111 0.00 0.00 30.39 4.44
198 199 3.258290 GCAGAGCGCGTTCCTAGC 61.258 66.667 19.83 16.82 0.00 3.42
229 230 3.438017 ATCTCGCCGAAGCTGGAGC 62.438 63.158 0.00 0.00 42.49 4.70
230 231 1.591059 CATCTCGCCGAAGCTGGAG 60.591 63.158 0.00 0.00 36.60 3.86
231 232 2.496341 CATCTCGCCGAAGCTGGA 59.504 61.111 0.00 0.00 36.60 3.86
232 233 2.587194 CCATCTCGCCGAAGCTGG 60.587 66.667 0.00 0.00 36.60 4.85
233 234 2.587194 CCCATCTCGCCGAAGCTG 60.587 66.667 0.00 0.00 36.60 4.24
234 235 4.537433 GCCCATCTCGCCGAAGCT 62.537 66.667 0.00 0.00 36.60 3.74
243 244 4.575973 AGCGCATGGGCCCATCTC 62.576 66.667 35.42 26.01 36.38 2.75
244 245 4.889112 CAGCGCATGGGCCCATCT 62.889 66.667 35.42 25.29 36.38 2.90
273 274 3.730761 GTGGAGCCGCAGTTGCAG 61.731 66.667 4.84 0.00 42.21 4.41
274 275 4.254709 AGTGGAGCCGCAGTTGCA 62.255 61.111 4.84 0.00 42.21 4.08
275 276 3.730761 CAGTGGAGCCGCAGTTGC 61.731 66.667 2.57 0.00 37.78 4.17
276 277 2.281070 ACAGTGGAGCCGCAGTTG 60.281 61.111 2.57 0.00 0.00 3.16
277 278 2.031163 GACAGTGGAGCCGCAGTT 59.969 61.111 2.57 0.00 0.00 3.16
278 279 4.363990 CGACAGTGGAGCCGCAGT 62.364 66.667 2.57 0.00 0.00 4.40
284 285 4.803426 CCGAGGCGACAGTGGAGC 62.803 72.222 0.00 0.00 0.00 4.70
285 286 3.343788 GACCGAGGCGACAGTGGAG 62.344 68.421 0.00 0.00 0.00 3.86
286 287 2.473891 TAGACCGAGGCGACAGTGGA 62.474 60.000 0.00 0.00 0.00 4.02
287 288 2.044555 TAGACCGAGGCGACAGTGG 61.045 63.158 0.00 0.00 0.00 4.00
288 289 1.136984 GTAGACCGAGGCGACAGTG 59.863 63.158 0.00 0.00 0.00 3.66
289 290 1.002379 AGTAGACCGAGGCGACAGT 60.002 57.895 0.00 0.00 0.00 3.55
290 291 1.429825 CAGTAGACCGAGGCGACAG 59.570 63.158 0.00 0.00 0.00 3.51
291 292 2.044555 CCAGTAGACCGAGGCGACA 61.045 63.158 0.00 0.00 0.00 4.35
292 293 1.991099 GACCAGTAGACCGAGGCGAC 61.991 65.000 0.00 0.00 0.00 5.19
293 294 1.748122 GACCAGTAGACCGAGGCGA 60.748 63.158 0.00 0.00 0.00 5.54
294 295 2.799371 GACCAGTAGACCGAGGCG 59.201 66.667 0.00 0.00 0.00 5.52
295 296 2.799371 CGACCAGTAGACCGAGGC 59.201 66.667 0.00 0.00 0.00 4.70
296 297 1.749638 AGCGACCAGTAGACCGAGG 60.750 63.158 0.00 0.00 0.00 4.63
297 298 1.429825 CAGCGACCAGTAGACCGAG 59.570 63.158 0.00 0.00 0.00 4.63
298 299 2.044555 CCAGCGACCAGTAGACCGA 61.045 63.158 0.00 0.00 0.00 4.69
299 300 2.490217 CCAGCGACCAGTAGACCG 59.510 66.667 0.00 0.00 0.00 4.79
300 301 2.893398 CCCAGCGACCAGTAGACC 59.107 66.667 0.00 0.00 0.00 3.85
301 302 2.184579 GCCCAGCGACCAGTAGAC 59.815 66.667 0.00 0.00 0.00 2.59
325 326 4.899239 CATCTCCGACGGGCCAGC 62.899 72.222 15.25 0.00 0.00 4.85
326 327 1.464376 ATACATCTCCGACGGGCCAG 61.464 60.000 15.25 1.85 0.00 4.85
327 328 1.456892 ATACATCTCCGACGGGCCA 60.457 57.895 15.25 0.00 0.00 5.36
328 329 1.006102 CATACATCTCCGACGGGCC 60.006 63.158 15.25 0.00 0.00 5.80
329 330 0.387929 TTCATACATCTCCGACGGGC 59.612 55.000 15.25 0.00 0.00 6.13
330 331 2.361119 TCTTTCATACATCTCCGACGGG 59.639 50.000 15.25 4.97 0.00 5.28
331 332 3.066900 AGTCTTTCATACATCTCCGACGG 59.933 47.826 7.84 7.84 0.00 4.79
332 333 4.294416 AGTCTTTCATACATCTCCGACG 57.706 45.455 0.00 0.00 0.00 5.12
333 334 5.869888 ACAAAGTCTTTCATACATCTCCGAC 59.130 40.000 0.00 0.00 0.00 4.79
334 335 6.037786 ACAAAGTCTTTCATACATCTCCGA 57.962 37.500 0.00 0.00 0.00 4.55
335 336 6.020599 CGTACAAAGTCTTTCATACATCTCCG 60.021 42.308 13.20 0.00 0.00 4.63
336 337 6.812160 ACGTACAAAGTCTTTCATACATCTCC 59.188 38.462 13.20 0.00 0.00 3.71
337 338 7.253354 CGACGTACAAAGTCTTTCATACATCTC 60.253 40.741 13.20 6.43 36.53 2.75
338 339 6.527023 CGACGTACAAAGTCTTTCATACATCT 59.473 38.462 13.20 0.63 36.53 2.90
339 340 6.237490 CCGACGTACAAAGTCTTTCATACATC 60.237 42.308 13.20 8.60 36.53 3.06
340 341 5.575606 CCGACGTACAAAGTCTTTCATACAT 59.424 40.000 13.20 2.38 36.53 2.29
341 342 4.919168 CCGACGTACAAAGTCTTTCATACA 59.081 41.667 13.20 0.00 36.53 2.29
342 343 4.201561 GCCGACGTACAAAGTCTTTCATAC 60.202 45.833 0.00 1.14 36.53 2.39
343 344 3.922240 GCCGACGTACAAAGTCTTTCATA 59.078 43.478 0.00 0.00 36.53 2.15
344 345 2.735134 GCCGACGTACAAAGTCTTTCAT 59.265 45.455 0.00 0.00 36.53 2.57
345 346 2.129607 GCCGACGTACAAAGTCTTTCA 58.870 47.619 0.00 0.00 36.53 2.69
346 347 2.401351 AGCCGACGTACAAAGTCTTTC 58.599 47.619 0.00 0.00 36.53 2.62
347 348 2.521105 AGCCGACGTACAAAGTCTTT 57.479 45.000 0.00 0.00 36.53 2.52
348 349 3.648339 TTAGCCGACGTACAAAGTCTT 57.352 42.857 0.00 0.00 36.53 3.01
349 350 3.730061 CGATTAGCCGACGTACAAAGTCT 60.730 47.826 0.00 0.00 36.53 3.24
350 351 2.529090 CGATTAGCCGACGTACAAAGTC 59.471 50.000 0.00 0.00 35.41 3.01
351 352 2.523015 CGATTAGCCGACGTACAAAGT 58.477 47.619 0.00 0.00 0.00 2.66
352 353 1.254570 GCGATTAGCCGACGTACAAAG 59.745 52.381 0.00 0.00 40.81 2.77
353 354 1.270971 GCGATTAGCCGACGTACAAA 58.729 50.000 0.00 0.00 40.81 2.83
354 355 2.948093 GCGATTAGCCGACGTACAA 58.052 52.632 0.00 0.00 40.81 2.41
355 356 4.696078 GCGATTAGCCGACGTACA 57.304 55.556 0.00 0.00 40.81 2.90
385 386 4.761227 AGCCAACCAAGCCAAAAATATTTG 59.239 37.500 0.39 0.00 44.50 2.32
386 387 4.761227 CAGCCAACCAAGCCAAAAATATTT 59.239 37.500 0.00 0.00 0.00 1.40
387 388 4.202451 ACAGCCAACCAAGCCAAAAATATT 60.202 37.500 0.00 0.00 0.00 1.28
388 389 3.327464 ACAGCCAACCAAGCCAAAAATAT 59.673 39.130 0.00 0.00 0.00 1.28
389 390 2.703007 ACAGCCAACCAAGCCAAAAATA 59.297 40.909 0.00 0.00 0.00 1.40
390 391 1.490069 ACAGCCAACCAAGCCAAAAAT 59.510 42.857 0.00 0.00 0.00 1.82
391 392 0.908198 ACAGCCAACCAAGCCAAAAA 59.092 45.000 0.00 0.00 0.00 1.94
392 393 0.908198 AACAGCCAACCAAGCCAAAA 59.092 45.000 0.00 0.00 0.00 2.44
393 394 0.463620 GAACAGCCAACCAAGCCAAA 59.536 50.000 0.00 0.00 0.00 3.28
394 395 1.733402 CGAACAGCCAACCAAGCCAA 61.733 55.000 0.00 0.00 0.00 4.52
395 396 2.192861 CGAACAGCCAACCAAGCCA 61.193 57.895 0.00 0.00 0.00 4.75
396 397 2.130073 GACGAACAGCCAACCAAGCC 62.130 60.000 0.00 0.00 0.00 4.35
397 398 1.282875 GACGAACAGCCAACCAAGC 59.717 57.895 0.00 0.00 0.00 4.01
398 399 1.841663 CGGACGAACAGCCAACCAAG 61.842 60.000 0.00 0.00 0.00 3.61
399 400 1.890041 CGGACGAACAGCCAACCAA 60.890 57.895 0.00 0.00 0.00 3.67
400 401 2.280524 CGGACGAACAGCCAACCA 60.281 61.111 0.00 0.00 0.00 3.67
401 402 2.027625 CTCGGACGAACAGCCAACC 61.028 63.158 0.00 0.00 0.00 3.77
402 403 2.668280 GCTCGGACGAACAGCCAAC 61.668 63.158 0.00 0.00 0.00 3.77
403 404 2.357034 GCTCGGACGAACAGCCAA 60.357 61.111 0.00 0.00 0.00 4.52
404 405 4.373116 GGCTCGGACGAACAGCCA 62.373 66.667 15.73 0.00 44.42 4.75
407 408 3.649277 CTGGGGCTCGGACGAACAG 62.649 68.421 0.00 0.00 0.00 3.16
408 409 3.691342 CTGGGGCTCGGACGAACA 61.691 66.667 0.00 0.00 0.00 3.18
409 410 1.880819 TTACTGGGGCTCGGACGAAC 61.881 60.000 0.00 0.00 0.00 3.95
410 411 1.186917 TTTACTGGGGCTCGGACGAA 61.187 55.000 0.00 0.00 0.00 3.85
411 412 1.601419 CTTTACTGGGGCTCGGACGA 61.601 60.000 0.00 0.00 0.00 4.20
412 413 1.153628 CTTTACTGGGGCTCGGACG 60.154 63.158 0.00 0.00 0.00 4.79
413 414 1.188863 TACTTTACTGGGGCTCGGAC 58.811 55.000 0.00 0.00 0.00 4.79
414 415 1.760613 CATACTTTACTGGGGCTCGGA 59.239 52.381 0.00 0.00 0.00 4.55
415 416 1.485066 ACATACTTTACTGGGGCTCGG 59.515 52.381 0.00 0.00 0.00 4.63
416 417 2.167693 TGACATACTTTACTGGGGCTCG 59.832 50.000 0.00 0.00 0.00 5.03
417 418 3.906720 TGACATACTTTACTGGGGCTC 57.093 47.619 0.00 0.00 0.00 4.70
418 419 4.862641 ATTGACATACTTTACTGGGGCT 57.137 40.909 0.00 0.00 0.00 5.19
419 420 5.066505 CAGAATTGACATACTTTACTGGGGC 59.933 44.000 0.00 0.00 0.00 5.80
420 421 5.066505 GCAGAATTGACATACTTTACTGGGG 59.933 44.000 0.00 0.00 0.00 4.96
421 422 5.647658 TGCAGAATTGACATACTTTACTGGG 59.352 40.000 0.00 0.00 0.00 4.45
422 423 6.546395 GTGCAGAATTGACATACTTTACTGG 58.454 40.000 0.00 0.00 0.00 4.00
423 424 6.090763 TCGTGCAGAATTGACATACTTTACTG 59.909 38.462 0.00 0.00 0.00 2.74
424 425 6.163476 TCGTGCAGAATTGACATACTTTACT 58.837 36.000 0.00 0.00 0.00 2.24
425 426 6.403333 TCGTGCAGAATTGACATACTTTAC 57.597 37.500 0.00 0.00 0.00 2.01
426 427 5.580691 CCTCGTGCAGAATTGACATACTTTA 59.419 40.000 0.00 0.00 0.00 1.85
427 428 4.393062 CCTCGTGCAGAATTGACATACTTT 59.607 41.667 0.00 0.00 0.00 2.66
428 429 3.935203 CCTCGTGCAGAATTGACATACTT 59.065 43.478 0.00 0.00 0.00 2.24
429 430 3.195610 TCCTCGTGCAGAATTGACATACT 59.804 43.478 0.00 0.00 0.00 2.12
430 431 3.521560 TCCTCGTGCAGAATTGACATAC 58.478 45.455 0.00 0.00 0.00 2.39
431 432 3.195610 ACTCCTCGTGCAGAATTGACATA 59.804 43.478 0.00 0.00 0.00 2.29
432 433 2.027745 ACTCCTCGTGCAGAATTGACAT 60.028 45.455 0.00 0.00 0.00 3.06
433 434 1.344438 ACTCCTCGTGCAGAATTGACA 59.656 47.619 0.00 0.00 0.00 3.58
434 435 1.996191 GACTCCTCGTGCAGAATTGAC 59.004 52.381 0.00 0.00 0.00 3.18
435 436 1.066858 GGACTCCTCGTGCAGAATTGA 60.067 52.381 0.00 0.00 33.62 2.57
436 437 1.338105 TGGACTCCTCGTGCAGAATTG 60.338 52.381 0.00 0.00 39.19 2.32
437 438 0.976641 TGGACTCCTCGTGCAGAATT 59.023 50.000 0.00 0.00 39.19 2.17
438 439 2.671145 TGGACTCCTCGTGCAGAAT 58.329 52.632 0.00 0.00 39.19 2.40
439 440 4.191243 TGGACTCCTCGTGCAGAA 57.809 55.556 0.00 0.00 39.19 3.02
443 444 2.885861 ACGATGGACTCCTCGTGC 59.114 61.111 16.89 0.00 45.63 5.34
446 447 1.032657 AGGACACGATGGACTCCTCG 61.033 60.000 12.65 12.65 40.62 4.63
447 448 1.187087 AAGGACACGATGGACTCCTC 58.813 55.000 0.00 0.00 31.51 3.71
448 449 1.645710 AAAGGACACGATGGACTCCT 58.354 50.000 0.00 0.00 34.38 3.69
449 450 2.474410 AAAAGGACACGATGGACTCC 57.526 50.000 0.00 0.00 0.00 3.85
450 451 2.742589 GGAAAAAGGACACGATGGACTC 59.257 50.000 0.00 0.00 0.00 3.36
451 452 2.105821 TGGAAAAAGGACACGATGGACT 59.894 45.455 0.00 0.00 0.00 3.85
452 453 2.500229 TGGAAAAAGGACACGATGGAC 58.500 47.619 0.00 0.00 0.00 4.02
453 454 2.940994 TGGAAAAAGGACACGATGGA 57.059 45.000 0.00 0.00 0.00 3.41
454 455 3.426159 CGATTGGAAAAAGGACACGATGG 60.426 47.826 0.00 0.00 0.00 3.51
455 456 3.426159 CCGATTGGAAAAAGGACACGATG 60.426 47.826 0.00 0.00 37.49 3.84
456 457 2.747446 CCGATTGGAAAAAGGACACGAT 59.253 45.455 0.00 0.00 37.49 3.73
457 458 2.147958 CCGATTGGAAAAAGGACACGA 58.852 47.619 0.00 0.00 37.49 4.35
458 459 2.147958 TCCGATTGGAAAAAGGACACG 58.852 47.619 0.00 0.00 42.85 4.49
459 460 2.095212 GCTCCGATTGGAAAAAGGACAC 60.095 50.000 2.51 0.00 45.87 3.67
460 461 2.159382 GCTCCGATTGGAAAAAGGACA 58.841 47.619 2.51 0.00 45.87 4.02
461 462 2.437413 AGCTCCGATTGGAAAAAGGAC 58.563 47.619 2.51 0.00 45.87 3.85
462 463 2.879103 AGCTCCGATTGGAAAAAGGA 57.121 45.000 2.51 0.00 45.87 3.36
463 464 5.765182 ACATATAGCTCCGATTGGAAAAAGG 59.235 40.000 2.51 0.00 45.87 3.11
464 465 6.867662 ACATATAGCTCCGATTGGAAAAAG 57.132 37.500 2.51 0.00 45.87 2.27
465 466 9.431887 GTATACATATAGCTCCGATTGGAAAAA 57.568 33.333 2.51 0.00 45.87 1.94
466 467 8.812972 AGTATACATATAGCTCCGATTGGAAAA 58.187 33.333 2.51 0.00 45.87 2.29
467 468 8.362464 AGTATACATATAGCTCCGATTGGAAA 57.638 34.615 2.51 0.00 45.87 3.13
468 469 7.956328 AGTATACATATAGCTCCGATTGGAA 57.044 36.000 2.51 0.00 45.87 3.53
469 470 8.272889 AGTAGTATACATATAGCTCCGATTGGA 58.727 37.037 5.50 0.51 46.26 3.53
470 471 8.453238 AGTAGTATACATATAGCTCCGATTGG 57.547 38.462 5.50 0.00 46.26 3.16
471 472 9.332502 AGAGTAGTATACATATAGCTCCGATTG 57.667 37.037 5.50 0.00 46.26 2.67
472 473 9.908747 AAGAGTAGTATACATATAGCTCCGATT 57.091 33.333 5.50 0.00 46.26 3.34
484 485 9.477484 CGGCTGAAATTTAAGAGTAGTATACAT 57.523 33.333 6.75 0.00 46.26 2.29
485 486 8.472413 ACGGCTGAAATTTAAGAGTAGTATACA 58.528 33.333 6.75 0.00 46.26 2.29
486 487 8.868635 ACGGCTGAAATTTAAGAGTAGTATAC 57.131 34.615 6.75 0.00 43.47 1.47
487 488 8.689061 TGACGGCTGAAATTTAAGAGTAGTATA 58.311 33.333 6.75 0.00 0.00 1.47
488 489 7.553334 TGACGGCTGAAATTTAAGAGTAGTAT 58.447 34.615 6.75 0.00 0.00 2.12
489 490 6.927416 TGACGGCTGAAATTTAAGAGTAGTA 58.073 36.000 6.75 0.00 0.00 1.82
490 491 5.790593 TGACGGCTGAAATTTAAGAGTAGT 58.209 37.500 6.75 0.24 0.00 2.73
491 492 6.721571 TTGACGGCTGAAATTTAAGAGTAG 57.278 37.500 6.75 0.00 0.00 2.57
492 493 7.103641 AGATTGACGGCTGAAATTTAAGAGTA 58.896 34.615 6.75 0.00 0.00 2.59
493 494 5.940470 AGATTGACGGCTGAAATTTAAGAGT 59.060 36.000 6.75 5.38 0.00 3.24
494 495 6.428385 AGATTGACGGCTGAAATTTAAGAG 57.572 37.500 6.75 2.21 0.00 2.85
495 496 6.817765 AAGATTGACGGCTGAAATTTAAGA 57.182 33.333 6.75 0.00 0.00 2.10
496 497 9.013490 CATAAAGATTGACGGCTGAAATTTAAG 57.987 33.333 0.00 0.00 0.00 1.85
497 498 7.973388 CCATAAAGATTGACGGCTGAAATTTAA 59.027 33.333 0.00 0.00 0.00 1.52
498 499 7.122055 ACCATAAAGATTGACGGCTGAAATTTA 59.878 33.333 0.00 0.00 0.00 1.40
499 500 6.071391 ACCATAAAGATTGACGGCTGAAATTT 60.071 34.615 0.00 0.00 0.00 1.82
500 501 5.418840 ACCATAAAGATTGACGGCTGAAATT 59.581 36.000 0.00 0.00 0.00 1.82
501 502 4.949856 ACCATAAAGATTGACGGCTGAAAT 59.050 37.500 0.00 0.00 0.00 2.17
502 503 4.331968 ACCATAAAGATTGACGGCTGAAA 58.668 39.130 0.00 0.00 0.00 2.69
503 504 3.950397 ACCATAAAGATTGACGGCTGAA 58.050 40.909 0.00 0.00 0.00 3.02
504 505 3.627395 ACCATAAAGATTGACGGCTGA 57.373 42.857 0.00 0.00 0.00 4.26
505 506 5.811399 TTAACCATAAAGATTGACGGCTG 57.189 39.130 0.00 0.00 0.00 4.85
506 507 9.787435 TTATATTAACCATAAAGATTGACGGCT 57.213 29.630 0.00 0.00 0.00 5.52
555 556 9.855021 CGGAAGATTTTATGGTTTTTCATAAGT 57.145 29.630 0.00 0.00 39.73 2.24
556 557 9.855021 ACGGAAGATTTTATGGTTTTTCATAAG 57.145 29.630 0.00 0.00 39.73 1.73
557 558 9.849166 GACGGAAGATTTTATGGTTTTTCATAA 57.151 29.630 0.00 0.00 37.70 1.90
558 559 8.463607 GGACGGAAGATTTTATGGTTTTTCATA 58.536 33.333 0.00 0.00 0.00 2.15
559 560 7.178451 AGGACGGAAGATTTTATGGTTTTTCAT 59.822 33.333 0.00 0.00 0.00 2.57
560 561 6.492087 AGGACGGAAGATTTTATGGTTTTTCA 59.508 34.615 0.00 0.00 0.00 2.69
561 562 6.920817 AGGACGGAAGATTTTATGGTTTTTC 58.079 36.000 0.00 0.00 0.00 2.29
562 563 6.911250 AGGACGGAAGATTTTATGGTTTTT 57.089 33.333 0.00 0.00 0.00 1.94
563 564 6.911250 AAGGACGGAAGATTTTATGGTTTT 57.089 33.333 0.00 0.00 0.00 2.43
564 565 6.911250 AAAGGACGGAAGATTTTATGGTTT 57.089 33.333 0.00 0.00 0.00 3.27
565 566 8.589701 AATAAAGGACGGAAGATTTTATGGTT 57.410 30.769 0.00 0.00 30.91 3.67
566 567 9.862149 ATAATAAAGGACGGAAGATTTTATGGT 57.138 29.630 0.00 0.00 30.91 3.55
597 598 8.573885 GCACGGGCATATGTACTATAATCTATA 58.426 37.037 3.77 0.00 40.72 1.31
598 599 7.434492 GCACGGGCATATGTACTATAATCTAT 58.566 38.462 3.77 0.00 40.72 1.98
599 600 6.459161 CGCACGGGCATATGTACTATAATCTA 60.459 42.308 11.77 0.00 41.24 1.98
600 601 5.661458 GCACGGGCATATGTACTATAATCT 58.339 41.667 3.77 0.00 40.72 2.40
601 602 4.503007 CGCACGGGCATATGTACTATAATC 59.497 45.833 11.77 0.00 41.24 1.75
602 603 4.081862 ACGCACGGGCATATGTACTATAAT 60.082 41.667 11.77 0.00 41.24 1.28
603 604 3.256383 ACGCACGGGCATATGTACTATAA 59.744 43.478 11.77 0.00 41.24 0.98
604 605 2.821378 ACGCACGGGCATATGTACTATA 59.179 45.455 11.77 0.00 41.24 1.31
605 606 1.616865 ACGCACGGGCATATGTACTAT 59.383 47.619 11.77 0.00 41.24 2.12
606 607 1.034356 ACGCACGGGCATATGTACTA 58.966 50.000 11.77 0.00 41.24 1.82
607 608 0.177141 AACGCACGGGCATATGTACT 59.823 50.000 11.77 0.00 41.24 2.73
608 609 0.303493 CAACGCACGGGCATATGTAC 59.697 55.000 11.77 0.00 41.24 2.90
609 610 1.433053 GCAACGCACGGGCATATGTA 61.433 55.000 11.77 0.00 41.24 2.29
610 611 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
611 612 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
612 613 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
613 614 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
614 615 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
616 617 4.980903 CTGTTGCAACGCACGGGC 62.981 66.667 23.79 0.00 38.71 6.13
617 618 4.326766 CCTGTTGCAACGCACGGG 62.327 66.667 23.79 12.20 38.71 5.28
618 619 2.329678 TTTCCTGTTGCAACGCACGG 62.330 55.000 23.79 19.54 38.71 4.94
619 620 0.929824 CTTTCCTGTTGCAACGCACG 60.930 55.000 23.79 12.07 38.71 5.34
620 621 0.380378 TCTTTCCTGTTGCAACGCAC 59.620 50.000 23.79 1.83 38.71 5.34
621 622 1.098869 TTCTTTCCTGTTGCAACGCA 58.901 45.000 23.79 7.32 36.47 5.24
622 623 2.202295 TTTCTTTCCTGTTGCAACGC 57.798 45.000 23.79 2.38 0.00 4.84
623 624 5.402270 CCTAATTTTCTTTCCTGTTGCAACG 59.598 40.000 23.79 17.58 0.00 4.10
624 625 5.696270 CCCTAATTTTCTTTCCTGTTGCAAC 59.304 40.000 22.83 22.83 0.00 4.17
625 626 5.365314 ACCCTAATTTTCTTTCCTGTTGCAA 59.635 36.000 0.00 0.00 0.00 4.08
626 627 4.898861 ACCCTAATTTTCTTTCCTGTTGCA 59.101 37.500 0.00 0.00 0.00 4.08
627 628 5.468540 ACCCTAATTTTCTTTCCTGTTGC 57.531 39.130 0.00 0.00 0.00 4.17
628 629 8.585018 ACATAACCCTAATTTTCTTTCCTGTTG 58.415 33.333 0.00 0.00 0.00 3.33
629 630 8.585018 CACATAACCCTAATTTTCTTTCCTGTT 58.415 33.333 0.00 0.00 0.00 3.16
630 631 7.309805 GCACATAACCCTAATTTTCTTTCCTGT 60.310 37.037 0.00 0.00 0.00 4.00
631 632 7.035612 GCACATAACCCTAATTTTCTTTCCTG 58.964 38.462 0.00 0.00 0.00 3.86
632 633 6.723977 TGCACATAACCCTAATTTTCTTTCCT 59.276 34.615 0.00 0.00 0.00 3.36
633 634 6.930731 TGCACATAACCCTAATTTTCTTTCC 58.069 36.000 0.00 0.00 0.00 3.13
634 635 9.087424 GATTGCACATAACCCTAATTTTCTTTC 57.913 33.333 0.00 0.00 0.00 2.62
635 636 8.592809 TGATTGCACATAACCCTAATTTTCTTT 58.407 29.630 0.00 0.00 0.00 2.52
636 637 8.034804 GTGATTGCACATAACCCTAATTTTCTT 58.965 33.333 0.00 0.00 44.51 2.52
637 638 7.547227 GTGATTGCACATAACCCTAATTTTCT 58.453 34.615 0.00 0.00 44.51 2.52
638 639 7.755582 GTGATTGCACATAACCCTAATTTTC 57.244 36.000 0.00 0.00 44.51 2.29
653 654 5.565592 TCTATGAACCATTGTGATTGCAC 57.434 39.130 0.00 0.00 45.35 4.57
654 655 6.389091 GTTTCTATGAACCATTGTGATTGCA 58.611 36.000 0.00 0.00 0.00 4.08
655 656 5.512788 CGTTTCTATGAACCATTGTGATTGC 59.487 40.000 0.00 0.00 0.00 3.56
656 657 5.512788 GCGTTTCTATGAACCATTGTGATTG 59.487 40.000 0.00 0.00 0.00 2.67
657 658 5.415701 AGCGTTTCTATGAACCATTGTGATT 59.584 36.000 0.00 0.00 0.00 2.57
658 659 4.943705 AGCGTTTCTATGAACCATTGTGAT 59.056 37.500 0.00 0.00 0.00 3.06
659 660 4.323417 AGCGTTTCTATGAACCATTGTGA 58.677 39.130 0.00 0.00 0.00 3.58
660 661 4.685169 AGCGTTTCTATGAACCATTGTG 57.315 40.909 0.00 0.00 0.00 3.33
661 662 5.488341 ACTAGCGTTTCTATGAACCATTGT 58.512 37.500 0.00 0.00 0.00 2.71
662 663 6.128282 ACAACTAGCGTTTCTATGAACCATTG 60.128 38.462 0.00 0.00 0.00 2.82
663 664 5.938125 ACAACTAGCGTTTCTATGAACCATT 59.062 36.000 0.00 0.00 0.00 3.16
664 665 5.488341 ACAACTAGCGTTTCTATGAACCAT 58.512 37.500 0.00 0.00 0.00 3.55
665 666 4.890088 ACAACTAGCGTTTCTATGAACCA 58.110 39.130 0.00 0.00 0.00 3.67
666 667 4.329256 GGACAACTAGCGTTTCTATGAACC 59.671 45.833 0.00 0.00 0.00 3.62
667 668 4.329256 GGGACAACTAGCGTTTCTATGAAC 59.671 45.833 0.00 0.00 0.00 3.18
668 669 4.020928 TGGGACAACTAGCGTTTCTATGAA 60.021 41.667 0.00 0.00 31.92 2.57
669 670 3.512329 TGGGACAACTAGCGTTTCTATGA 59.488 43.478 0.00 0.00 31.92 2.15
670 671 3.617263 GTGGGACAACTAGCGTTTCTATG 59.383 47.826 0.00 0.00 44.16 2.23
671 672 3.369157 GGTGGGACAACTAGCGTTTCTAT 60.369 47.826 0.00 0.00 46.61 1.98
672 673 2.028748 GGTGGGACAACTAGCGTTTCTA 60.029 50.000 0.00 0.00 46.61 2.10
673 674 1.270678 GGTGGGACAACTAGCGTTTCT 60.271 52.381 0.00 0.00 46.61 2.52
674 675 1.154197 GGTGGGACAACTAGCGTTTC 58.846 55.000 0.00 0.00 46.61 2.78
675 676 3.317449 GGTGGGACAACTAGCGTTT 57.683 52.632 0.00 0.00 46.61 3.60
684 685 5.914716 AGGTAAAGATATATGGGTGGGACAA 59.085 40.000 0.00 0.00 44.16 3.18
685 686 5.482580 AGGTAAAGATATATGGGTGGGACA 58.517 41.667 0.00 0.00 0.00 4.02
686 687 6.729569 AGTAGGTAAAGATATATGGGTGGGAC 59.270 42.308 0.00 0.00 0.00 4.46
687 688 6.882155 AGTAGGTAAAGATATATGGGTGGGA 58.118 40.000 0.00 0.00 0.00 4.37
688 689 8.674925 TTAGTAGGTAAAGATATATGGGTGGG 57.325 38.462 0.00 0.00 0.00 4.61
703 704 7.238486 TCACCGTTGGTTTATTAGTAGGTAA 57.762 36.000 0.00 0.00 31.02 2.85
730 731 4.541482 TCGATGACGTACGGCCGC 62.541 66.667 28.58 9.25 40.69 6.53
731 732 2.649975 GTCGATGACGTACGGCCG 60.650 66.667 26.86 26.86 40.69 6.13
777 783 0.672401 GGACTGCGGGTTGAATTCGA 60.672 55.000 0.04 0.00 0.00 3.71
778 784 0.673644 AGGACTGCGGGTTGAATTCG 60.674 55.000 0.04 0.00 0.00 3.34
813 823 6.078202 TGCAAAAACGAAATGGTATCTCAA 57.922 33.333 0.00 0.00 0.00 3.02
841 851 9.106070 GGTTGAATATACTAAAGTACAGGGTTG 57.894 37.037 0.00 0.00 32.72 3.77
855 866 1.069668 GGACCGCGGGTTGAATATACT 59.930 52.381 31.76 2.41 35.25 2.12
894 905 3.265791 GCTGAGTTGATCCGTTCTCAAT 58.734 45.455 0.00 0.00 36.67 2.57
898 909 0.108615 CCGCTGAGTTGATCCGTTCT 60.109 55.000 0.00 0.00 0.00 3.01
901 912 2.125512 GCCGCTGAGTTGATCCGT 60.126 61.111 0.00 0.00 0.00 4.69
910 921 2.884685 CAAGCTCGAGCCGCTGAG 60.885 66.667 32.94 13.13 43.38 3.35
1018 1080 1.672356 CCCTGTCTCCTTTGTGCCG 60.672 63.158 0.00 0.00 0.00 5.69
1226 1288 0.250081 GATGGATCGGGGAAGCTGAC 60.250 60.000 0.00 0.00 0.00 3.51
1260 1324 3.090532 GGGCCATCGAGGAAGGGT 61.091 66.667 4.39 0.00 41.22 4.34
1860 2356 6.756074 GTCAACAAACAAGATGAAATGAACCA 59.244 34.615 0.00 0.00 0.00 3.67
1861 2357 6.756074 TGTCAACAAACAAGATGAAATGAACC 59.244 34.615 0.00 0.00 0.00 3.62
1862 2358 7.754069 TGTCAACAAACAAGATGAAATGAAC 57.246 32.000 0.00 0.00 0.00 3.18
1863 2359 8.819015 CAATGTCAACAAACAAGATGAAATGAA 58.181 29.630 0.00 0.00 31.81 2.57
1864 2360 8.196103 TCAATGTCAACAAACAAGATGAAATGA 58.804 29.630 0.00 0.00 31.81 2.57
1865 2361 8.355272 TCAATGTCAACAAACAAGATGAAATG 57.645 30.769 0.00 0.00 31.81 2.32
1866 2362 8.984764 CATCAATGTCAACAAACAAGATGAAAT 58.015 29.630 13.24 0.00 42.40 2.17
1867 2363 7.438757 CCATCAATGTCAACAAACAAGATGAAA 59.561 33.333 17.25 0.00 42.40 2.69
1868 2364 6.924612 CCATCAATGTCAACAAACAAGATGAA 59.075 34.615 17.25 0.00 42.40 2.57
1869 2365 6.040729 ACCATCAATGTCAACAAACAAGATGA 59.959 34.615 17.25 7.99 42.40 2.92
1870 2366 6.144886 CACCATCAATGTCAACAAACAAGATG 59.855 38.462 12.25 12.25 41.06 2.90
1871 2367 6.183360 ACACCATCAATGTCAACAAACAAGAT 60.183 34.615 0.00 0.00 31.86 2.40
1872 2368 5.126869 ACACCATCAATGTCAACAAACAAGA 59.873 36.000 0.00 0.00 31.81 3.02
1873 2369 5.350633 ACACCATCAATGTCAACAAACAAG 58.649 37.500 0.00 0.00 31.81 3.16
1874 2370 5.336150 ACACCATCAATGTCAACAAACAA 57.664 34.783 0.00 0.00 31.81 2.83
1875 2371 4.998671 ACACCATCAATGTCAACAAACA 57.001 36.364 0.00 0.00 0.00 2.83
1876 2372 5.108517 ACAACACCATCAATGTCAACAAAC 58.891 37.500 0.00 0.00 0.00 2.93
1877 2373 5.336150 ACAACACCATCAATGTCAACAAA 57.664 34.783 0.00 0.00 0.00 2.83
1878 2374 4.202101 GGACAACACCATCAATGTCAACAA 60.202 41.667 7.03 0.00 43.02 2.83
1879 2375 3.317711 GGACAACACCATCAATGTCAACA 59.682 43.478 7.03 0.00 43.02 3.33
1880 2376 3.317711 TGGACAACACCATCAATGTCAAC 59.682 43.478 7.03 0.00 43.02 3.18
1881 2377 3.560105 TGGACAACACCATCAATGTCAA 58.440 40.909 7.03 0.00 43.02 3.18
1882 2378 3.220674 TGGACAACACCATCAATGTCA 57.779 42.857 7.03 0.00 43.02 3.58
1891 2387 4.023980 TGTTAAACCAATGGACAACACCA 58.976 39.130 6.16 0.00 44.41 4.17
1892 2388 4.339814 TCTGTTAAACCAATGGACAACACC 59.660 41.667 6.16 0.00 0.00 4.16
1893 2389 5.508200 TCTGTTAAACCAATGGACAACAC 57.492 39.130 6.16 0.00 0.00 3.32
1894 2390 6.531503 TTTCTGTTAAACCAATGGACAACA 57.468 33.333 6.16 11.48 0.00 3.33
1895 2391 8.432110 AAATTTCTGTTAAACCAATGGACAAC 57.568 30.769 6.16 7.33 0.00 3.32
1922 2418 9.028284 TCCTGCTTTTCAGATAAAATTTCAGAT 57.972 29.630 0.00 0.00 45.72 2.90
1923 2419 8.408043 TCCTGCTTTTCAGATAAAATTTCAGA 57.592 30.769 0.00 0.00 45.72 3.27
1924 2420 9.649167 AATCCTGCTTTTCAGATAAAATTTCAG 57.351 29.630 0.00 0.00 45.72 3.02
1925 2421 9.426837 CAATCCTGCTTTTCAGATAAAATTTCA 57.573 29.630 0.00 0.00 45.72 2.69
1926 2422 8.876790 CCAATCCTGCTTTTCAGATAAAATTTC 58.123 33.333 0.00 0.00 45.72 2.17
1927 2423 8.377799 ACCAATCCTGCTTTTCAGATAAAATTT 58.622 29.630 0.00 0.00 45.72 1.82
1928 2424 7.910584 ACCAATCCTGCTTTTCAGATAAAATT 58.089 30.769 0.00 0.00 45.72 1.82
1929 2425 7.486407 ACCAATCCTGCTTTTCAGATAAAAT 57.514 32.000 0.00 0.00 45.72 1.82
1930 2426 6.916360 ACCAATCCTGCTTTTCAGATAAAA 57.084 33.333 0.00 0.00 45.72 1.52
1931 2427 6.916360 AACCAATCCTGCTTTTCAGATAAA 57.084 33.333 0.00 0.00 45.72 1.40
1932 2428 8.593945 ATTAACCAATCCTGCTTTTCAGATAA 57.406 30.769 0.00 0.00 45.72 1.75
1933 2429 8.593945 AATTAACCAATCCTGCTTTTCAGATA 57.406 30.769 0.00 0.00 45.72 1.98
1934 2430 7.486407 AATTAACCAATCCTGCTTTTCAGAT 57.514 32.000 0.00 0.00 45.72 2.90
1935 2431 6.916360 AATTAACCAATCCTGCTTTTCAGA 57.084 33.333 0.00 0.00 45.72 3.27
1936 2432 7.153985 TGAAATTAACCAATCCTGCTTTTCAG 58.846 34.615 0.00 0.00 42.49 3.02
1937 2433 7.060383 TGAAATTAACCAATCCTGCTTTTCA 57.940 32.000 0.00 0.00 0.00 2.69
1938 2434 8.037166 AGATGAAATTAACCAATCCTGCTTTTC 58.963 33.333 0.00 0.00 0.00 2.29
1939 2435 7.910584 AGATGAAATTAACCAATCCTGCTTTT 58.089 30.769 0.00 0.00 0.00 2.27
1940 2436 7.486407 AGATGAAATTAACCAATCCTGCTTT 57.514 32.000 0.00 0.00 0.00 3.51
1941 2437 7.038799 ACAAGATGAAATTAACCAATCCTGCTT 60.039 33.333 0.00 0.00 0.00 3.91
1942 2438 6.438425 ACAAGATGAAATTAACCAATCCTGCT 59.562 34.615 0.00 0.00 0.00 4.24
1943 2439 6.633856 ACAAGATGAAATTAACCAATCCTGC 58.366 36.000 0.00 0.00 0.00 4.85
1944 2440 8.928733 CAAACAAGATGAAATTAACCAATCCTG 58.071 33.333 0.00 0.00 0.00 3.86
1945 2441 8.650490 ACAAACAAGATGAAATTAACCAATCCT 58.350 29.630 0.00 0.00 0.00 3.24
1946 2442 8.831715 ACAAACAAGATGAAATTAACCAATCC 57.168 30.769 0.00 0.00 0.00 3.01
2152 2650 2.324541 ACCTTCACAGAACTCTCAGCT 58.675 47.619 0.00 0.00 0.00 4.24
2156 2654 7.657761 TCAAAATCTTACCTTCACAGAACTCTC 59.342 37.037 0.00 0.00 0.00 3.20
2187 2685 3.869065 TGTGTGGTACTGCTTAATAGGC 58.131 45.455 0.00 0.00 0.00 3.93
2319 2819 7.396339 GTGACCCCCAAAATATAAAGGATATCC 59.604 40.741 14.41 14.41 29.85 2.59
2337 2837 2.514458 ATCAACAATCAGTGACCCCC 57.486 50.000 0.00 0.00 0.00 5.40
2431 2932 5.001232 TGACATGTGGCTAGTAAAAACTCC 58.999 41.667 1.15 0.00 0.00 3.85
3047 3639 2.340210 AAAAACGCAAGGCCCAAATT 57.660 40.000 0.00 0.00 46.39 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.