Multiple sequence alignment - TraesCS7D01G023800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G023800 chr7D 100.000 3532 0 0 1 3532 11072821 11069290 0.000000e+00 6523.0
1 TraesCS7D01G023800 chr7D 87.857 140 13 3 609 746 11254060 11253923 1.010000e-35 161.0
2 TraesCS7D01G023800 chr7A 92.978 2606 140 23 613 3196 10353509 10350925 0.000000e+00 3759.0
3 TraesCS7D01G023800 chr7A 90.281 2706 213 28 609 3281 10255569 10252881 0.000000e+00 3494.0
4 TraesCS7D01G023800 chr7A 91.794 1572 87 16 844 2402 10608851 10610393 0.000000e+00 2150.0
5 TraesCS7D01G023800 chr7A 92.613 1435 89 7 2023 3442 10208388 10206956 0.000000e+00 2047.0
6 TraesCS7D01G023800 chr7A 92.864 1093 70 7 1759 2844 10279847 10278756 0.000000e+00 1580.0
7 TraesCS7D01G023800 chr7A 90.000 710 56 3 1061 1760 10280632 10279928 0.000000e+00 904.0
8 TraesCS7D01G023800 chr7A 82.069 145 23 3 361 504 10286775 10286633 1.720000e-23 121.0
9 TraesCS7D01G023800 chr7A 84.466 103 4 4 2898 3000 10278734 10278644 1.350000e-14 91.6
10 TraesCS7D01G023800 chr7A 91.228 57 3 1 609 665 641529349 641529295 3.780000e-10 76.8
11 TraesCS7D01G023800 chr4A 93.194 2013 115 6 609 2607 726978515 726980519 0.000000e+00 2939.0
12 TraesCS7D01G023800 chr4A 92.684 1613 93 7 1061 2655 727054991 727056596 0.000000e+00 2302.0
13 TraesCS7D01G023800 chr4A 86.139 505 45 14 2797 3281 727056640 727057139 4.040000e-144 521.0
14 TraesCS7D01G023800 chr4A 85.223 494 52 6 2911 3384 726980517 726981009 4.100000e-134 488.0
15 TraesCS7D01G023800 chr4A 81.215 181 31 3 325 504 727048633 727048811 3.680000e-30 143.0
16 TraesCS7D01G023800 chr6A 89.474 57 4 1 609 665 409920729 409920783 1.760000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G023800 chr7D 11069290 11072821 3531 True 6523.000000 6523 100.0000 1 3532 1 chr7D.!!$R1 3531
1 TraesCS7D01G023800 chr7A 10350925 10353509 2584 True 3759.000000 3759 92.9780 613 3196 1 chr7A.!!$R4 2583
2 TraesCS7D01G023800 chr7A 10252881 10255569 2688 True 3494.000000 3494 90.2810 609 3281 1 chr7A.!!$R2 2672
3 TraesCS7D01G023800 chr7A 10608851 10610393 1542 False 2150.000000 2150 91.7940 844 2402 1 chr7A.!!$F1 1558
4 TraesCS7D01G023800 chr7A 10206956 10208388 1432 True 2047.000000 2047 92.6130 2023 3442 1 chr7A.!!$R1 1419
5 TraesCS7D01G023800 chr7A 10278644 10280632 1988 True 858.533333 1580 89.1100 1061 3000 3 chr7A.!!$R6 1939
6 TraesCS7D01G023800 chr4A 726978515 726981009 2494 False 1713.500000 2939 89.2085 609 3384 2 chr4A.!!$F2 2775
7 TraesCS7D01G023800 chr4A 727054991 727057139 2148 False 1411.500000 2302 89.4115 1061 3281 2 chr4A.!!$F3 2220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.037590 TCATGTTTTGGGCCGCTACT 59.962 50.0 0.00 0.00 0.0 2.57 F
153 154 0.108329 TTCTTACCGGCTGCAGCTAC 60.108 55.0 35.82 20.65 41.7 3.58 F
1474 1496 0.105246 TGGTTGGGTGCCAATTTCCT 60.105 50.0 0.00 0.00 45.8 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 1331 0.107945 CAACACCTAGGAGCTCCAGC 60.108 60.000 33.90 8.02 42.49 4.85 R
2062 2181 1.298014 GGGCCACAGAAGTCCTGAG 59.702 63.158 4.39 0.00 45.78 3.35 R
3464 3633 0.453390 GGTGCAGCTCAATAGTTGGC 59.547 55.000 9.07 0.00 34.71 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.135960 GAGGAGGGAGAAATGAGGGG 58.864 60.000 0.00 0.00 0.00 4.79
20 21 0.327964 AGGAGGGAGAAATGAGGGGG 60.328 60.000 0.00 0.00 0.00 5.40
40 41 5.373812 GGGGAAAGTGATATTCCTCAGAA 57.626 43.478 5.38 0.00 45.20 3.02
41 42 5.755849 GGGGAAAGTGATATTCCTCAGAAA 58.244 41.667 5.38 0.00 45.20 2.52
42 43 6.187682 GGGGAAAGTGATATTCCTCAGAAAA 58.812 40.000 5.38 0.00 45.20 2.29
43 44 6.836007 GGGGAAAGTGATATTCCTCAGAAAAT 59.164 38.462 5.38 0.00 45.20 1.82
44 45 7.998964 GGGGAAAGTGATATTCCTCAGAAAATA 59.001 37.037 5.38 0.00 45.20 1.40
45 46 8.841300 GGGAAAGTGATATTCCTCAGAAAATAC 58.159 37.037 5.38 0.00 44.71 1.89
46 47 9.620259 GGAAAGTGATATTCCTCAGAAAATACT 57.380 33.333 0.00 0.00 42.53 2.12
106 107 2.689553 AAAACTGGTGTTTGGCTTGG 57.310 45.000 0.00 0.00 44.70 3.61
107 108 1.567357 AAACTGGTGTTTGGCTTGGT 58.433 45.000 0.00 0.00 43.90 3.67
108 109 1.567357 AACTGGTGTTTGGCTTGGTT 58.433 45.000 0.00 0.00 31.37 3.67
109 110 1.111277 ACTGGTGTTTGGCTTGGTTC 58.889 50.000 0.00 0.00 0.00 3.62
110 111 1.110442 CTGGTGTTTGGCTTGGTTCA 58.890 50.000 0.00 0.00 0.00 3.18
111 112 1.688197 CTGGTGTTTGGCTTGGTTCAT 59.312 47.619 0.00 0.00 0.00 2.57
112 113 1.411977 TGGTGTTTGGCTTGGTTCATG 59.588 47.619 0.00 0.00 0.00 3.07
113 114 1.412343 GGTGTTTGGCTTGGTTCATGT 59.588 47.619 0.00 0.00 0.00 3.21
114 115 2.158971 GGTGTTTGGCTTGGTTCATGTT 60.159 45.455 0.00 0.00 0.00 2.71
115 116 3.530535 GTGTTTGGCTTGGTTCATGTTT 58.469 40.909 0.00 0.00 0.00 2.83
116 117 3.938334 GTGTTTGGCTTGGTTCATGTTTT 59.062 39.130 0.00 0.00 0.00 2.43
117 118 3.937706 TGTTTGGCTTGGTTCATGTTTTG 59.062 39.130 0.00 0.00 0.00 2.44
118 119 2.906691 TGGCTTGGTTCATGTTTTGG 57.093 45.000 0.00 0.00 0.00 3.28
119 120 1.415659 TGGCTTGGTTCATGTTTTGGG 59.584 47.619 0.00 0.00 0.00 4.12
120 121 1.511850 GCTTGGTTCATGTTTTGGGC 58.488 50.000 0.00 0.00 0.00 5.36
121 122 1.877680 GCTTGGTTCATGTTTTGGGCC 60.878 52.381 0.00 0.00 0.00 5.80
122 123 0.390860 TTGGTTCATGTTTTGGGCCG 59.609 50.000 0.00 0.00 0.00 6.13
123 124 1.374125 GGTTCATGTTTTGGGCCGC 60.374 57.895 0.00 0.00 0.00 6.53
124 125 1.665442 GTTCATGTTTTGGGCCGCT 59.335 52.632 0.00 0.00 0.00 5.52
125 126 0.885196 GTTCATGTTTTGGGCCGCTA 59.115 50.000 0.00 0.00 0.00 4.26
126 127 0.885196 TTCATGTTTTGGGCCGCTAC 59.115 50.000 0.00 0.00 0.00 3.58
127 128 0.037590 TCATGTTTTGGGCCGCTACT 59.962 50.000 0.00 0.00 0.00 2.57
128 129 1.279558 TCATGTTTTGGGCCGCTACTA 59.720 47.619 0.00 0.00 0.00 1.82
129 130 1.400494 CATGTTTTGGGCCGCTACTAC 59.600 52.381 0.00 0.00 0.00 2.73
130 131 0.688487 TGTTTTGGGCCGCTACTACT 59.312 50.000 0.00 0.00 0.00 2.57
131 132 1.072648 TGTTTTGGGCCGCTACTACTT 59.927 47.619 0.00 0.00 0.00 2.24
132 133 1.736126 GTTTTGGGCCGCTACTACTTC 59.264 52.381 0.00 0.00 0.00 3.01
133 134 1.272807 TTTGGGCCGCTACTACTTCT 58.727 50.000 0.00 0.00 0.00 2.85
134 135 1.272807 TTGGGCCGCTACTACTTCTT 58.727 50.000 0.00 0.00 0.00 2.52
135 136 1.272807 TGGGCCGCTACTACTTCTTT 58.727 50.000 0.00 0.00 0.00 2.52
136 137 1.206371 TGGGCCGCTACTACTTCTTTC 59.794 52.381 0.00 0.00 0.00 2.62
137 138 1.481363 GGGCCGCTACTACTTCTTTCT 59.519 52.381 0.00 0.00 0.00 2.52
138 139 2.093606 GGGCCGCTACTACTTCTTTCTT 60.094 50.000 0.00 0.00 0.00 2.52
139 140 3.131755 GGGCCGCTACTACTTCTTTCTTA 59.868 47.826 0.00 0.00 0.00 2.10
140 141 4.111198 GGCCGCTACTACTTCTTTCTTAC 58.889 47.826 0.00 0.00 0.00 2.34
141 142 4.111198 GCCGCTACTACTTCTTTCTTACC 58.889 47.826 0.00 0.00 0.00 2.85
142 143 4.349501 CCGCTACTACTTCTTTCTTACCG 58.650 47.826 0.00 0.00 0.00 4.02
143 144 4.349501 CGCTACTACTTCTTTCTTACCGG 58.650 47.826 0.00 0.00 0.00 5.28
144 145 4.111198 GCTACTACTTCTTTCTTACCGGC 58.889 47.826 0.00 0.00 0.00 6.13
145 146 4.142204 GCTACTACTTCTTTCTTACCGGCT 60.142 45.833 0.00 0.00 0.00 5.52
146 147 4.189639 ACTACTTCTTTCTTACCGGCTG 57.810 45.455 0.00 0.00 0.00 4.85
147 148 1.809684 ACTTCTTTCTTACCGGCTGC 58.190 50.000 0.00 0.00 0.00 5.25
148 149 1.071699 ACTTCTTTCTTACCGGCTGCA 59.928 47.619 0.00 0.00 0.00 4.41
149 150 1.734465 CTTCTTTCTTACCGGCTGCAG 59.266 52.381 10.11 10.11 0.00 4.41
150 151 0.673644 TCTTTCTTACCGGCTGCAGC 60.674 55.000 30.88 30.88 41.14 5.25
151 152 0.674895 CTTTCTTACCGGCTGCAGCT 60.675 55.000 35.82 20.59 41.70 4.24
152 153 0.611200 TTTCTTACCGGCTGCAGCTA 59.389 50.000 35.82 19.49 41.70 3.32
153 154 0.108329 TTCTTACCGGCTGCAGCTAC 60.108 55.000 35.82 20.65 41.70 3.58
154 155 1.218047 CTTACCGGCTGCAGCTACA 59.782 57.895 35.82 17.29 41.70 2.74
155 156 0.807667 CTTACCGGCTGCAGCTACAG 60.808 60.000 35.82 23.49 41.70 2.74
156 157 1.254975 TTACCGGCTGCAGCTACAGA 61.255 55.000 35.82 17.91 40.25 3.41
157 158 1.254975 TACCGGCTGCAGCTACAGAA 61.255 55.000 35.82 15.52 40.25 3.02
158 159 1.812922 CCGGCTGCAGCTACAGAAG 60.813 63.158 35.82 18.14 40.25 2.85
166 167 4.943822 GCTACAGAAGCCCACTCC 57.056 61.111 0.00 0.00 46.25 3.85
167 168 2.291856 GCTACAGAAGCCCACTCCT 58.708 57.895 0.00 0.00 46.25 3.69
168 169 0.615850 GCTACAGAAGCCCACTCCTT 59.384 55.000 0.00 0.00 46.25 3.36
169 170 1.406205 GCTACAGAAGCCCACTCCTTC 60.406 57.143 0.00 0.00 46.25 3.46
170 171 1.208293 CTACAGAAGCCCACTCCTTCC 59.792 57.143 0.00 0.00 39.55 3.46
171 172 0.474660 ACAGAAGCCCACTCCTTCCT 60.475 55.000 0.00 0.00 39.55 3.36
172 173 1.203313 ACAGAAGCCCACTCCTTCCTA 60.203 52.381 0.00 0.00 39.55 2.94
173 174 1.208293 CAGAAGCCCACTCCTTCCTAC 59.792 57.143 0.00 0.00 39.55 3.18
174 175 0.542333 GAAGCCCACTCCTTCCTACC 59.458 60.000 0.00 0.00 34.12 3.18
175 176 0.178873 AAGCCCACTCCTTCCTACCA 60.179 55.000 0.00 0.00 0.00 3.25
176 177 0.618968 AGCCCACTCCTTCCTACCAG 60.619 60.000 0.00 0.00 0.00 4.00
177 178 1.627297 GCCCACTCCTTCCTACCAGG 61.627 65.000 0.00 0.00 36.46 4.45
178 179 1.627297 CCCACTCCTTCCTACCAGGC 61.627 65.000 0.00 0.00 34.61 4.85
179 180 1.517832 CACTCCTTCCTACCAGGCG 59.482 63.158 0.00 0.00 34.61 5.52
180 181 1.686110 ACTCCTTCCTACCAGGCGG 60.686 63.158 0.00 0.00 34.61 6.13
182 183 0.396695 CTCCTTCCTACCAGGCGGTA 60.397 60.000 7.76 7.76 46.71 4.02
194 195 3.587095 GCGGTAAGAAGCCCAACC 58.413 61.111 0.00 0.00 0.00 3.77
195 196 1.302993 GCGGTAAGAAGCCCAACCA 60.303 57.895 0.00 0.00 32.04 3.67
196 197 0.891904 GCGGTAAGAAGCCCAACCAA 60.892 55.000 0.00 0.00 32.04 3.67
197 198 0.879090 CGGTAAGAAGCCCAACCAAC 59.121 55.000 0.00 0.00 32.04 3.77
198 199 1.816183 CGGTAAGAAGCCCAACCAACA 60.816 52.381 0.00 0.00 32.04 3.33
199 200 1.886542 GGTAAGAAGCCCAACCAACAG 59.113 52.381 0.00 0.00 32.04 3.16
200 201 1.886542 GTAAGAAGCCCAACCAACAGG 59.113 52.381 0.00 0.00 0.00 4.00
204 205 4.621087 GCCCAACCAACAGGCCCT 62.621 66.667 0.00 0.00 41.00 5.19
205 206 3.176297 CCCAACCAACAGGCCCTA 58.824 61.111 0.00 0.00 0.00 3.53
206 207 1.304134 CCCAACCAACAGGCCCTAC 60.304 63.158 0.00 0.00 0.00 3.18
207 208 1.304134 CCAACCAACAGGCCCTACC 60.304 63.158 0.00 0.00 39.61 3.18
208 209 1.304134 CAACCAACAGGCCCTACCC 60.304 63.158 0.00 0.00 40.58 3.69
209 210 1.776710 AACCAACAGGCCCTACCCA 60.777 57.895 0.00 0.00 40.58 4.51
210 211 1.789576 AACCAACAGGCCCTACCCAG 61.790 60.000 0.00 0.00 40.58 4.45
211 212 2.677228 CAACAGGCCCTACCCAGG 59.323 66.667 0.00 0.00 40.58 4.45
220 221 2.123425 CTACCCAGGCGGCTCCTA 60.123 66.667 9.32 0.00 45.52 2.94
221 222 2.443390 TACCCAGGCGGCTCCTAC 60.443 66.667 9.32 0.00 45.52 3.18
224 225 4.162690 CCAGGCGGCTCCTACCAC 62.163 72.222 9.32 0.00 45.52 4.16
225 226 4.162690 CAGGCGGCTCCTACCACC 62.163 72.222 9.32 0.00 45.52 4.61
226 227 4.715130 AGGCGGCTCCTACCACCA 62.715 66.667 5.25 0.00 45.41 4.17
227 228 4.468689 GGCGGCTCCTACCACCAC 62.469 72.222 0.00 0.00 31.75 4.16
228 229 4.814294 GCGGCTCCTACCACCACG 62.814 72.222 0.00 0.00 0.00 4.94
229 230 4.814294 CGGCTCCTACCACCACGC 62.814 72.222 0.00 0.00 0.00 5.34
230 231 4.468689 GGCTCCTACCACCACGCC 62.469 72.222 0.00 0.00 0.00 5.68
231 232 4.468689 GCTCCTACCACCACGCCC 62.469 72.222 0.00 0.00 0.00 6.13
232 233 4.143333 CTCCTACCACCACGCCCG 62.143 72.222 0.00 0.00 0.00 6.13
251 252 4.504916 CCGTGAGCCTCTCGCCTG 62.505 72.222 10.52 0.00 37.68 4.85
253 254 4.828925 GTGAGCCTCTCGCCTGCC 62.829 72.222 0.00 0.00 38.78 4.85
319 320 4.115199 GCCGCCAATCCCACCTCT 62.115 66.667 0.00 0.00 0.00 3.69
320 321 2.124570 CCGCCAATCCCACCTCTG 60.125 66.667 0.00 0.00 0.00 3.35
321 322 2.825836 CGCCAATCCCACCTCTGC 60.826 66.667 0.00 0.00 0.00 4.26
322 323 2.679716 GCCAATCCCACCTCTGCT 59.320 61.111 0.00 0.00 0.00 4.24
323 324 1.751927 GCCAATCCCACCTCTGCTG 60.752 63.158 0.00 0.00 0.00 4.41
324 325 1.751927 CCAATCCCACCTCTGCTGC 60.752 63.158 0.00 0.00 0.00 5.25
325 326 1.751927 CAATCCCACCTCTGCTGCC 60.752 63.158 0.00 0.00 0.00 4.85
326 327 2.988839 AATCCCACCTCTGCTGCCC 61.989 63.158 0.00 0.00 0.00 5.36
377 378 4.148825 CTACGGCGGCTCCAAGCT 62.149 66.667 13.24 0.00 41.99 3.74
378 379 4.143333 TACGGCGGCTCCAAGCTC 62.143 66.667 13.24 0.00 41.99 4.09
384 385 4.811364 GGCTCCAAGCTCCAGCCC 62.811 72.222 16.40 0.00 46.20 5.19
385 386 3.726144 GCTCCAAGCTCCAGCCCT 61.726 66.667 0.00 0.00 43.38 5.19
386 387 2.588989 CTCCAAGCTCCAGCCCTC 59.411 66.667 0.00 0.00 43.38 4.30
387 388 2.203983 TCCAAGCTCCAGCCCTCA 60.204 61.111 0.00 0.00 43.38 3.86
388 389 1.845627 CTCCAAGCTCCAGCCCTCAA 61.846 60.000 0.00 0.00 43.38 3.02
389 390 1.676967 CCAAGCTCCAGCCCTCAAC 60.677 63.158 0.00 0.00 43.38 3.18
390 391 1.676967 CAAGCTCCAGCCCTCAACC 60.677 63.158 0.00 0.00 43.38 3.77
391 392 2.911926 AAGCTCCAGCCCTCAACCC 61.912 63.158 0.00 0.00 43.38 4.11
392 393 4.785453 GCTCCAGCCCTCAACCCG 62.785 72.222 0.00 0.00 34.31 5.28
393 394 3.322466 CTCCAGCCCTCAACCCGT 61.322 66.667 0.00 0.00 0.00 5.28
394 395 3.612247 CTCCAGCCCTCAACCCGTG 62.612 68.421 0.00 0.00 0.00 4.94
395 396 3.636231 CCAGCCCTCAACCCGTGA 61.636 66.667 0.00 0.00 34.17 4.35
396 397 2.358737 CAGCCCTCAACCCGTGAC 60.359 66.667 0.00 0.00 31.13 3.67
397 398 3.637273 AGCCCTCAACCCGTGACC 61.637 66.667 0.00 0.00 31.13 4.02
398 399 4.717313 GCCCTCAACCCGTGACCC 62.717 72.222 0.00 0.00 31.13 4.46
399 400 2.928396 CCCTCAACCCGTGACCCT 60.928 66.667 0.00 0.00 31.13 4.34
400 401 2.663196 CCTCAACCCGTGACCCTC 59.337 66.667 0.00 0.00 31.13 4.30
401 402 2.261671 CTCAACCCGTGACCCTCG 59.738 66.667 0.00 0.00 31.13 4.63
402 403 3.934391 CTCAACCCGTGACCCTCGC 62.934 68.421 0.00 0.00 31.13 5.03
423 424 4.977126 CGCCGCCGACGATACCTC 62.977 72.222 0.00 0.00 43.93 3.85
424 425 4.642542 GCCGCCGACGATACCTCC 62.643 72.222 0.00 0.00 43.93 4.30
425 426 2.905880 CCGCCGACGATACCTCCT 60.906 66.667 0.00 0.00 43.93 3.69
426 427 2.638154 CGCCGACGATACCTCCTC 59.362 66.667 0.00 0.00 43.93 3.71
427 428 2.905807 CGCCGACGATACCTCCTCC 61.906 68.421 0.00 0.00 43.93 4.30
428 429 2.905807 GCCGACGATACCTCCTCCG 61.906 68.421 0.00 0.00 0.00 4.63
429 430 2.638154 CGACGATACCTCCTCCGC 59.362 66.667 0.00 0.00 0.00 5.54
430 431 2.638154 GACGATACCTCCTCCGCG 59.362 66.667 0.00 0.00 0.00 6.46
431 432 3.539560 GACGATACCTCCTCCGCGC 62.540 68.421 0.00 0.00 0.00 6.86
432 433 4.344474 CGATACCTCCTCCGCGCC 62.344 72.222 0.00 0.00 0.00 6.53
433 434 3.992317 GATACCTCCTCCGCGCCC 61.992 72.222 0.00 0.00 0.00 6.13
452 453 3.056328 GCAACCGCCAAGGACCTC 61.056 66.667 0.00 0.00 45.00 3.85
453 454 2.429930 CAACCGCCAAGGACCTCA 59.570 61.111 0.00 0.00 45.00 3.86
454 455 1.228124 CAACCGCCAAGGACCTCAA 60.228 57.895 0.00 0.00 45.00 3.02
455 456 1.228154 AACCGCCAAGGACCTCAAC 60.228 57.895 0.00 0.00 45.00 3.18
456 457 2.359975 CCGCCAAGGACCTCAACC 60.360 66.667 0.00 0.00 45.00 3.77
457 458 2.742372 CGCCAAGGACCTCAACCG 60.742 66.667 0.00 0.00 0.00 4.44
458 459 3.056328 GCCAAGGACCTCAACCGC 61.056 66.667 0.00 0.00 0.00 5.68
459 460 2.429930 CCAAGGACCTCAACCGCA 59.570 61.111 0.00 0.00 0.00 5.69
460 461 1.672356 CCAAGGACCTCAACCGCAG 60.672 63.158 0.00 0.00 0.00 5.18
475 476 4.821589 CAGGCCGCCCTCTTCGAC 62.822 72.222 5.55 0.00 40.33 4.20
478 479 4.516195 GCCGCCCTCTTCGACCTC 62.516 72.222 0.00 0.00 0.00 3.85
479 480 3.068691 CCGCCCTCTTCGACCTCA 61.069 66.667 0.00 0.00 0.00 3.86
480 481 2.427245 CCGCCCTCTTCGACCTCAT 61.427 63.158 0.00 0.00 0.00 2.90
481 482 1.066587 CGCCCTCTTCGACCTCATC 59.933 63.158 0.00 0.00 0.00 2.92
482 483 1.443828 GCCCTCTTCGACCTCATCC 59.556 63.158 0.00 0.00 0.00 3.51
483 484 1.045911 GCCCTCTTCGACCTCATCCT 61.046 60.000 0.00 0.00 0.00 3.24
484 485 1.036707 CCCTCTTCGACCTCATCCTC 58.963 60.000 0.00 0.00 0.00 3.71
485 486 1.410932 CCCTCTTCGACCTCATCCTCT 60.411 57.143 0.00 0.00 0.00 3.69
486 487 1.680735 CCTCTTCGACCTCATCCTCTG 59.319 57.143 0.00 0.00 0.00 3.35
487 488 1.680735 CTCTTCGACCTCATCCTCTGG 59.319 57.143 0.00 0.00 0.00 3.86
488 489 1.006043 TCTTCGACCTCATCCTCTGGT 59.994 52.381 0.00 0.00 36.70 4.00
489 490 2.241430 TCTTCGACCTCATCCTCTGGTA 59.759 50.000 0.00 0.00 33.74 3.25
490 491 2.820728 TCGACCTCATCCTCTGGTAA 57.179 50.000 0.00 0.00 33.74 2.85
491 492 3.314307 TCGACCTCATCCTCTGGTAAT 57.686 47.619 0.00 0.00 33.74 1.89
492 493 3.223435 TCGACCTCATCCTCTGGTAATC 58.777 50.000 0.00 0.00 33.74 1.75
493 494 2.959030 CGACCTCATCCTCTGGTAATCA 59.041 50.000 0.00 0.00 33.74 2.57
494 495 3.384789 CGACCTCATCCTCTGGTAATCAA 59.615 47.826 0.00 0.00 33.74 2.57
495 496 4.039730 CGACCTCATCCTCTGGTAATCAAT 59.960 45.833 0.00 0.00 33.74 2.57
496 497 5.546526 GACCTCATCCTCTGGTAATCAATC 58.453 45.833 0.00 0.00 33.74 2.67
497 498 4.971282 ACCTCATCCTCTGGTAATCAATCA 59.029 41.667 0.00 0.00 31.50 2.57
498 499 5.429762 ACCTCATCCTCTGGTAATCAATCAA 59.570 40.000 0.00 0.00 31.50 2.57
499 500 5.762218 CCTCATCCTCTGGTAATCAATCAAC 59.238 44.000 0.00 0.00 0.00 3.18
500 501 5.684704 TCATCCTCTGGTAATCAATCAACC 58.315 41.667 0.00 0.00 0.00 3.77
501 502 4.503714 TCCTCTGGTAATCAATCAACCC 57.496 45.455 0.00 0.00 31.97 4.11
502 503 4.111577 TCCTCTGGTAATCAATCAACCCT 58.888 43.478 0.00 0.00 31.97 4.34
503 504 4.540099 TCCTCTGGTAATCAATCAACCCTT 59.460 41.667 0.00 0.00 31.97 3.95
504 505 5.015178 TCCTCTGGTAATCAATCAACCCTTT 59.985 40.000 0.00 0.00 31.97 3.11
505 506 5.716703 CCTCTGGTAATCAATCAACCCTTTT 59.283 40.000 0.00 0.00 31.97 2.27
506 507 6.889722 CCTCTGGTAATCAATCAACCCTTTTA 59.110 38.462 0.00 0.00 31.97 1.52
507 508 7.561356 CCTCTGGTAATCAATCAACCCTTTTAT 59.439 37.037 0.00 0.00 31.97 1.40
508 509 8.519799 TCTGGTAATCAATCAACCCTTTTATC 57.480 34.615 0.00 0.00 31.97 1.75
509 510 8.112822 TCTGGTAATCAATCAACCCTTTTATCA 58.887 33.333 0.00 0.00 31.97 2.15
510 511 8.062065 TGGTAATCAATCAACCCTTTTATCAC 57.938 34.615 0.00 0.00 31.97 3.06
511 512 7.123547 TGGTAATCAATCAACCCTTTTATCACC 59.876 37.037 0.00 0.00 31.97 4.02
512 513 7.342026 GGTAATCAATCAACCCTTTTATCACCT 59.658 37.037 0.00 0.00 0.00 4.00
513 514 6.780457 ATCAATCAACCCTTTTATCACCTG 57.220 37.500 0.00 0.00 0.00 4.00
514 515 5.886609 TCAATCAACCCTTTTATCACCTGA 58.113 37.500 0.00 0.00 0.00 3.86
515 516 6.310941 TCAATCAACCCTTTTATCACCTGAA 58.689 36.000 0.00 0.00 0.00 3.02
516 517 6.953520 TCAATCAACCCTTTTATCACCTGAAT 59.046 34.615 0.00 0.00 0.00 2.57
517 518 8.112822 TCAATCAACCCTTTTATCACCTGAATA 58.887 33.333 0.00 0.00 0.00 1.75
518 519 8.917088 CAATCAACCCTTTTATCACCTGAATAT 58.083 33.333 0.00 0.00 0.00 1.28
519 520 7.880160 TCAACCCTTTTATCACCTGAATATG 57.120 36.000 0.00 0.00 0.00 1.78
520 521 6.321181 TCAACCCTTTTATCACCTGAATATGC 59.679 38.462 0.00 0.00 0.00 3.14
521 522 5.140454 ACCCTTTTATCACCTGAATATGCC 58.860 41.667 0.00 0.00 0.00 4.40
522 523 5.139727 CCCTTTTATCACCTGAATATGCCA 58.860 41.667 0.00 0.00 0.00 4.92
523 524 5.598005 CCCTTTTATCACCTGAATATGCCAA 59.402 40.000 0.00 0.00 0.00 4.52
524 525 6.098124 CCCTTTTATCACCTGAATATGCCAAA 59.902 38.462 0.00 0.00 0.00 3.28
525 526 7.364585 CCCTTTTATCACCTGAATATGCCAAAA 60.365 37.037 0.00 0.00 0.00 2.44
526 527 8.206189 CCTTTTATCACCTGAATATGCCAAAAT 58.794 33.333 0.00 0.00 0.00 1.82
527 528 9.252962 CTTTTATCACCTGAATATGCCAAAATC 57.747 33.333 0.00 0.00 0.00 2.17
528 529 8.537728 TTTATCACCTGAATATGCCAAAATCT 57.462 30.769 0.00 0.00 0.00 2.40
529 530 5.840243 TCACCTGAATATGCCAAAATCTG 57.160 39.130 0.00 0.00 0.00 2.90
530 531 5.263599 TCACCTGAATATGCCAAAATCTGT 58.736 37.500 0.00 0.00 0.00 3.41
531 532 6.422333 TCACCTGAATATGCCAAAATCTGTA 58.578 36.000 0.00 0.00 0.00 2.74
532 533 6.543465 TCACCTGAATATGCCAAAATCTGTAG 59.457 38.462 0.00 0.00 0.00 2.74
533 534 6.319658 CACCTGAATATGCCAAAATCTGTAGT 59.680 38.462 0.00 0.00 0.00 2.73
534 535 7.498900 CACCTGAATATGCCAAAATCTGTAGTA 59.501 37.037 0.00 0.00 0.00 1.82
535 536 7.499232 ACCTGAATATGCCAAAATCTGTAGTAC 59.501 37.037 0.00 0.00 0.00 2.73
536 537 7.716998 CCTGAATATGCCAAAATCTGTAGTACT 59.283 37.037 0.00 0.00 0.00 2.73
537 538 9.764363 CTGAATATGCCAAAATCTGTAGTACTA 57.236 33.333 0.00 0.00 0.00 1.82
541 542 7.849804 ATGCCAAAATCTGTAGTACTAAGTG 57.150 36.000 3.61 0.00 0.00 3.16
542 543 6.765403 TGCCAAAATCTGTAGTACTAAGTGT 58.235 36.000 3.61 0.00 0.00 3.55
543 544 7.898918 TGCCAAAATCTGTAGTACTAAGTGTA 58.101 34.615 3.61 0.00 0.00 2.90
544 545 8.033038 TGCCAAAATCTGTAGTACTAAGTGTAG 58.967 37.037 3.61 0.00 0.00 2.74
545 546 7.010275 GCCAAAATCTGTAGTACTAAGTGTAGC 59.990 40.741 3.61 0.00 0.00 3.58
546 547 8.251721 CCAAAATCTGTAGTACTAAGTGTAGCT 58.748 37.037 3.61 0.00 0.00 3.32
547 548 9.291664 CAAAATCTGTAGTACTAAGTGTAGCTC 57.708 37.037 3.61 0.00 0.00 4.09
548 549 6.847956 ATCTGTAGTACTAAGTGTAGCTCG 57.152 41.667 3.61 0.00 0.00 5.03
549 550 5.728471 TCTGTAGTACTAAGTGTAGCTCGT 58.272 41.667 3.61 0.00 0.00 4.18
550 551 6.169094 TCTGTAGTACTAAGTGTAGCTCGTT 58.831 40.000 3.61 0.00 0.00 3.85
551 552 6.091849 TCTGTAGTACTAAGTGTAGCTCGTTG 59.908 42.308 3.61 0.00 0.00 4.10
552 553 4.094090 AGTACTAAGTGTAGCTCGTTGC 57.906 45.455 0.00 0.00 43.29 4.17
553 554 2.365408 ACTAAGTGTAGCTCGTTGCC 57.635 50.000 0.00 0.00 44.23 4.52
554 555 1.893801 ACTAAGTGTAGCTCGTTGCCT 59.106 47.619 0.00 0.00 44.23 4.75
555 556 2.094649 ACTAAGTGTAGCTCGTTGCCTC 60.095 50.000 0.00 0.00 44.23 4.70
556 557 0.679505 AAGTGTAGCTCGTTGCCTCA 59.320 50.000 0.00 0.00 44.23 3.86
557 558 0.679505 AGTGTAGCTCGTTGCCTCAA 59.320 50.000 0.00 0.00 44.23 3.02
558 559 0.790814 GTGTAGCTCGTTGCCTCAAC 59.209 55.000 0.00 0.00 44.23 3.18
566 567 2.216203 GTTGCCTCAACGCTTTTGC 58.784 52.632 0.00 0.00 43.23 3.68
587 588 5.428496 GCATGCTAAATTATGCAGTCTGA 57.572 39.130 11.37 0.00 46.72 3.27
588 589 5.450171 GCATGCTAAATTATGCAGTCTGAG 58.550 41.667 11.37 0.00 46.72 3.35
589 590 5.008415 GCATGCTAAATTATGCAGTCTGAGT 59.992 40.000 11.37 0.00 46.72 3.41
590 591 6.203530 GCATGCTAAATTATGCAGTCTGAGTA 59.796 38.462 11.37 0.00 46.72 2.59
591 592 7.571026 CATGCTAAATTATGCAGTCTGAGTAC 58.429 38.462 3.32 0.00 42.74 2.73
592 593 6.878317 TGCTAAATTATGCAGTCTGAGTACT 58.122 36.000 3.32 0.00 34.84 2.73
593 594 7.331026 TGCTAAATTATGCAGTCTGAGTACTT 58.669 34.615 3.32 0.00 34.84 2.24
594 595 7.278646 TGCTAAATTATGCAGTCTGAGTACTTG 59.721 37.037 3.32 0.00 34.84 3.16
595 596 6.428385 AAATTATGCAGTCTGAGTACTTGC 57.572 37.500 3.32 9.14 0.00 4.01
596 597 4.808414 TTATGCAGTCTGAGTACTTGCT 57.192 40.909 15.52 6.06 0.00 3.91
597 598 3.692257 ATGCAGTCTGAGTACTTGCTT 57.308 42.857 15.52 8.17 0.00 3.91
598 599 4.808414 ATGCAGTCTGAGTACTTGCTTA 57.192 40.909 15.52 0.00 0.00 3.09
599 600 4.600692 TGCAGTCTGAGTACTTGCTTAA 57.399 40.909 15.52 0.00 0.00 1.85
600 601 5.152623 TGCAGTCTGAGTACTTGCTTAAT 57.847 39.130 15.52 0.00 0.00 1.40
601 602 4.931601 TGCAGTCTGAGTACTTGCTTAATG 59.068 41.667 15.52 3.73 0.00 1.90
602 603 5.171476 GCAGTCTGAGTACTTGCTTAATGA 58.829 41.667 3.32 0.00 0.00 2.57
603 604 5.814705 GCAGTCTGAGTACTTGCTTAATGAT 59.185 40.000 3.32 0.00 0.00 2.45
604 605 6.238049 GCAGTCTGAGTACTTGCTTAATGATG 60.238 42.308 3.32 0.00 0.00 3.07
605 606 6.257411 CAGTCTGAGTACTTGCTTAATGATGG 59.743 42.308 0.00 0.00 0.00 3.51
606 607 6.070538 AGTCTGAGTACTTGCTTAATGATGGT 60.071 38.462 0.00 0.00 0.00 3.55
607 608 7.124298 AGTCTGAGTACTTGCTTAATGATGGTA 59.876 37.037 0.00 0.00 0.00 3.25
608 609 7.222999 GTCTGAGTACTTGCTTAATGATGGTAC 59.777 40.741 0.00 0.00 0.00 3.34
701 702 3.800604 GCTTACCTAGGCAGTATGAGCAC 60.801 52.174 9.30 0.00 39.69 4.40
732 733 5.385509 TCACGTTGCTGCTATATATGCTA 57.614 39.130 0.00 0.00 0.00 3.49
787 790 2.499693 TCACCTATGCACTTCCATTCGA 59.500 45.455 0.00 0.00 0.00 3.71
816 825 6.218019 TCTGTACCATGCGGTTAATACATAC 58.782 40.000 0.00 0.00 46.31 2.39
854 863 7.054124 TGCACCTCTATTAAGTTATTTCCAGG 58.946 38.462 0.00 0.00 0.00 4.45
933 942 6.596309 TTCTGATTCTGCTCTCTGTTAGAA 57.404 37.500 0.00 0.00 32.46 2.10
937 946 6.393990 TGATTCTGCTCTCTGTTAGAAAGTC 58.606 40.000 0.00 0.00 33.39 3.01
965 975 5.012239 TGCTGTTCTTGCTGAGGAATATTT 58.988 37.500 0.00 0.00 0.00 1.40
970 980 4.526970 TCTTGCTGAGGAATATTTCACCC 58.473 43.478 0.00 0.00 0.00 4.61
1085 1097 0.968901 CCTGCCACATGTGCATTCCT 60.969 55.000 20.81 0.00 38.22 3.36
1100 1112 6.116126 GTGCATTCCTTCCTACTTATGAACT 58.884 40.000 0.00 0.00 0.00 3.01
1206 1219 3.118738 TGTTACCGTGCATTTTTGGGTTT 60.119 39.130 0.00 0.00 32.29 3.27
1212 1225 3.308530 GTGCATTTTTGGGTTTCTCTCG 58.691 45.455 0.00 0.00 0.00 4.04
1214 1227 2.556622 GCATTTTTGGGTTTCTCTCGGA 59.443 45.455 0.00 0.00 0.00 4.55
1216 1229 4.675408 GCATTTTTGGGTTTCTCTCGGATC 60.675 45.833 0.00 0.00 0.00 3.36
1223 1236 5.205821 TGGGTTTCTCTCGGATCATAACTA 58.794 41.667 0.00 0.00 0.00 2.24
1226 1239 6.015350 GGGTTTCTCTCGGATCATAACTATGA 60.015 42.308 2.00 2.00 45.78 2.15
1230 1243 6.068670 TCTCTCGGATCATAACTATGACCAA 58.931 40.000 1.53 0.00 44.66 3.67
1238 1251 8.725148 GGATCATAACTATGACCAATTAAGCAG 58.275 37.037 1.53 0.00 44.66 4.24
1239 1252 7.496529 TCATAACTATGACCAATTAAGCAGC 57.503 36.000 0.00 0.00 37.76 5.25
1240 1253 6.486657 TCATAACTATGACCAATTAAGCAGCC 59.513 38.462 0.00 0.00 37.76 4.85
1241 1254 3.206150 ACTATGACCAATTAAGCAGCCG 58.794 45.455 0.00 0.00 0.00 5.52
1242 1255 0.740737 ATGACCAATTAAGCAGCCGC 59.259 50.000 0.00 0.00 38.99 6.53
1262 1275 1.428370 GCCACAGATCGTGCGCATTA 61.428 55.000 15.91 4.97 44.91 1.90
1264 1277 1.267532 CCACAGATCGTGCGCATTAAC 60.268 52.381 15.91 6.43 44.91 2.01
1267 1280 0.814010 AGATCGTGCGCATTAACCCC 60.814 55.000 15.91 0.00 0.00 4.95
1277 1291 4.142138 TGCGCATTAACCCCGATTTTTATT 60.142 37.500 5.66 0.00 0.00 1.40
1278 1292 4.443063 GCGCATTAACCCCGATTTTTATTC 59.557 41.667 0.30 0.00 0.00 1.75
1310 1331 0.179048 TTGGTGTGCAGAGGACACTG 60.179 55.000 18.74 0.00 42.83 3.66
1474 1496 0.105246 TGGTTGGGTGCCAATTTCCT 60.105 50.000 0.00 0.00 45.80 3.36
1689 1723 2.286365 TGCTTTTCTGTTACCCCTGG 57.714 50.000 0.00 0.00 0.00 4.45
1727 1761 8.463930 AACATTGTTTCAGGTTCTCTTGATTA 57.536 30.769 0.00 0.00 30.07 1.75
1926 2043 3.206150 TGAAAGTGTGGTCTTGAAGCTC 58.794 45.455 0.00 0.00 0.00 4.09
2042 2161 3.584848 ACAAAGAAGGTGAGCAGTCCTAT 59.415 43.478 0.00 0.00 33.27 2.57
2085 2204 1.147817 AGGACTTCTGTGGCCCAAATT 59.852 47.619 0.00 0.00 0.00 1.82
2205 2325 5.934625 GTCTTACCTGATGTTTGTGTCTGAT 59.065 40.000 0.00 0.00 0.00 2.90
2291 2412 3.591196 TCAATTGATCCGCTTTTTGGG 57.409 42.857 3.38 0.00 0.00 4.12
2370 2491 2.176889 GTTGGTGGTGAGGTAGCTCTA 58.823 52.381 21.80 6.72 0.00 2.43
2371 2492 2.766828 GTTGGTGGTGAGGTAGCTCTAT 59.233 50.000 21.80 0.00 0.00 1.98
2526 2654 6.985188 TTGCAATACAGGTTTCTGAGATAC 57.015 37.500 0.00 0.00 43.49 2.24
2530 2658 9.143155 TGCAATACAGGTTTCTGAGATACTATA 57.857 33.333 3.18 0.00 43.49 1.31
2556 2691 5.793952 CAGTCTCAATTCGCTTCAGAAATTG 59.206 40.000 0.00 0.00 33.43 2.32
2590 2725 4.771054 TCAGGACTAACTACTCCAGTTTCC 59.229 45.833 0.00 0.00 45.54 3.13
2646 2781 6.855763 TTGCTTCCTTCATATGTGGATTTT 57.144 33.333 16.66 0.00 0.00 1.82
2886 3033 0.598065 AACCGGATCAGTTGCAAAGC 59.402 50.000 9.46 0.00 0.00 3.51
2905 3052 1.202290 GCGACAGCCCAATTGGTATTG 60.202 52.381 22.91 18.29 40.70 1.90
3414 3583 6.431722 ACCTGTTGGTGCCATTTATATTACT 58.568 36.000 0.00 0.00 46.51 2.24
3442 3611 6.206829 ACCTTATTTTGTTTCCTGCTGTAGTC 59.793 38.462 0.00 0.00 0.00 2.59
3443 3612 6.349363 CCTTATTTTGTTTCCTGCTGTAGTCC 60.349 42.308 0.00 0.00 0.00 3.85
3444 3613 2.561478 TTGTTTCCTGCTGTAGTCCC 57.439 50.000 0.00 0.00 0.00 4.46
3445 3614 1.429930 TGTTTCCTGCTGTAGTCCCA 58.570 50.000 0.00 0.00 0.00 4.37
3446 3615 1.985159 TGTTTCCTGCTGTAGTCCCAT 59.015 47.619 0.00 0.00 0.00 4.00
3447 3616 2.290260 TGTTTCCTGCTGTAGTCCCATG 60.290 50.000 0.00 0.00 0.00 3.66
3448 3617 1.951209 TTCCTGCTGTAGTCCCATGA 58.049 50.000 0.00 0.00 0.00 3.07
3449 3618 1.951209 TCCTGCTGTAGTCCCATGAA 58.049 50.000 0.00 0.00 0.00 2.57
3450 3619 2.265367 TCCTGCTGTAGTCCCATGAAA 58.735 47.619 0.00 0.00 0.00 2.69
3451 3620 2.237143 TCCTGCTGTAGTCCCATGAAAG 59.763 50.000 0.00 0.00 0.00 2.62
3452 3621 2.237143 CCTGCTGTAGTCCCATGAAAGA 59.763 50.000 0.00 0.00 0.00 2.52
3453 3622 3.529533 CTGCTGTAGTCCCATGAAAGAG 58.470 50.000 0.00 0.00 0.00 2.85
3454 3623 3.173151 TGCTGTAGTCCCATGAAAGAGA 58.827 45.455 0.00 0.00 0.00 3.10
3455 3624 3.776969 TGCTGTAGTCCCATGAAAGAGAT 59.223 43.478 0.00 0.00 0.00 2.75
3456 3625 4.141846 TGCTGTAGTCCCATGAAAGAGATC 60.142 45.833 0.00 0.00 0.00 2.75
3457 3626 4.742138 GCTGTAGTCCCATGAAAGAGATCC 60.742 50.000 0.00 0.00 0.00 3.36
3458 3627 4.624913 TGTAGTCCCATGAAAGAGATCCT 58.375 43.478 0.00 0.00 0.00 3.24
3459 3628 5.032846 TGTAGTCCCATGAAAGAGATCCTT 58.967 41.667 0.00 0.00 36.47 3.36
3461 3630 6.672218 TGTAGTCCCATGAAAGAGATCCTTTA 59.328 38.462 8.58 1.20 44.63 1.85
3462 3631 5.995446 AGTCCCATGAAAGAGATCCTTTAC 58.005 41.667 8.58 4.12 44.63 2.01
3463 3632 5.488919 AGTCCCATGAAAGAGATCCTTTACA 59.511 40.000 8.58 8.93 44.63 2.41
3464 3633 5.819901 GTCCCATGAAAGAGATCCTTTACAG 59.180 44.000 8.58 3.48 44.63 2.74
3465 3634 4.578105 CCCATGAAAGAGATCCTTTACAGC 59.422 45.833 8.58 0.13 44.63 4.40
3466 3635 4.578105 CCATGAAAGAGATCCTTTACAGCC 59.422 45.833 8.58 0.00 44.63 4.85
3467 3636 4.908601 TGAAAGAGATCCTTTACAGCCA 57.091 40.909 8.58 1.90 44.63 4.75
3468 3637 5.241403 TGAAAGAGATCCTTTACAGCCAA 57.759 39.130 8.58 0.00 44.63 4.52
3469 3638 5.003804 TGAAAGAGATCCTTTACAGCCAAC 58.996 41.667 8.58 0.00 44.63 3.77
3470 3639 4.917906 AAGAGATCCTTTACAGCCAACT 57.082 40.909 0.00 0.00 0.00 3.16
3471 3640 6.013725 TGAAAGAGATCCTTTACAGCCAACTA 60.014 38.462 8.58 0.00 44.63 2.24
3472 3641 6.567602 AAGAGATCCTTTACAGCCAACTAT 57.432 37.500 0.00 0.00 0.00 2.12
3473 3642 6.567602 AGAGATCCTTTACAGCCAACTATT 57.432 37.500 0.00 0.00 0.00 1.73
3474 3643 6.352516 AGAGATCCTTTACAGCCAACTATTG 58.647 40.000 0.00 0.00 0.00 1.90
3475 3644 6.156949 AGAGATCCTTTACAGCCAACTATTGA 59.843 38.462 0.00 0.00 0.00 2.57
3476 3645 6.352516 AGATCCTTTACAGCCAACTATTGAG 58.647 40.000 0.00 0.00 0.00 3.02
3477 3646 4.261801 TCCTTTACAGCCAACTATTGAGC 58.738 43.478 0.00 0.00 0.00 4.26
3478 3647 4.019321 TCCTTTACAGCCAACTATTGAGCT 60.019 41.667 0.00 0.00 37.57 4.09
3481 3650 1.456296 CAGCCAACTATTGAGCTGCA 58.544 50.000 14.70 0.00 43.07 4.41
3482 3651 1.131883 CAGCCAACTATTGAGCTGCAC 59.868 52.381 14.70 0.00 43.07 4.57
3483 3652 0.453390 GCCAACTATTGAGCTGCACC 59.547 55.000 1.02 0.00 0.00 5.01
3484 3653 1.952367 GCCAACTATTGAGCTGCACCT 60.952 52.381 1.02 0.00 0.00 4.00
3485 3654 2.012673 CCAACTATTGAGCTGCACCTC 58.987 52.381 1.02 1.81 0.00 3.85
3486 3655 2.012673 CAACTATTGAGCTGCACCTCC 58.987 52.381 6.57 0.00 0.00 4.30
3487 3656 1.577736 ACTATTGAGCTGCACCTCCT 58.422 50.000 6.57 0.00 0.00 3.69
3488 3657 1.209019 ACTATTGAGCTGCACCTCCTG 59.791 52.381 6.57 0.00 0.00 3.86
3490 3659 2.833604 ATTGAGCTGCACCTCCTGCC 62.834 60.000 6.57 0.00 46.51 4.85
3491 3660 4.792804 GAGCTGCACCTCCTGCCC 62.793 72.222 1.02 0.00 46.51 5.36
3493 3662 4.666253 GCTGCACCTCCTGCCCAA 62.666 66.667 0.00 0.00 46.51 4.12
3494 3663 2.115910 CTGCACCTCCTGCCCAAA 59.884 61.111 0.00 0.00 46.51 3.28
3495 3664 1.531365 CTGCACCTCCTGCCCAAAA 60.531 57.895 0.00 0.00 46.51 2.44
3496 3665 0.901580 CTGCACCTCCTGCCCAAAAT 60.902 55.000 0.00 0.00 46.51 1.82
3497 3666 0.407528 TGCACCTCCTGCCCAAAATA 59.592 50.000 0.00 0.00 46.51 1.40
3498 3667 1.203112 TGCACCTCCTGCCCAAAATAA 60.203 47.619 0.00 0.00 46.51 1.40
3499 3668 1.899142 GCACCTCCTGCCCAAAATAAA 59.101 47.619 0.00 0.00 40.42 1.40
3500 3669 2.301583 GCACCTCCTGCCCAAAATAAAA 59.698 45.455 0.00 0.00 40.42 1.52
3501 3670 3.055167 GCACCTCCTGCCCAAAATAAAAT 60.055 43.478 0.00 0.00 40.42 1.82
3502 3671 4.161377 GCACCTCCTGCCCAAAATAAAATA 59.839 41.667 0.00 0.00 40.42 1.40
3503 3672 5.337975 GCACCTCCTGCCCAAAATAAAATAA 60.338 40.000 0.00 0.00 40.42 1.40
3504 3673 6.706295 CACCTCCTGCCCAAAATAAAATAAA 58.294 36.000 0.00 0.00 0.00 1.40
3505 3674 7.164803 CACCTCCTGCCCAAAATAAAATAAAA 58.835 34.615 0.00 0.00 0.00 1.52
3506 3675 7.828717 CACCTCCTGCCCAAAATAAAATAAAAT 59.171 33.333 0.00 0.00 0.00 1.82
3507 3676 9.052365 ACCTCCTGCCCAAAATAAAATAAAATA 57.948 29.630 0.00 0.00 0.00 1.40
3524 3693 9.656040 AAATAAAATATTGAGCTGCATTTGACA 57.344 25.926 1.02 0.00 0.00 3.58
3525 3694 8.867112 ATAAAATATTGAGCTGCATTTGACAG 57.133 30.769 1.02 0.00 38.22 3.51
3526 3695 4.913335 ATATTGAGCTGCATTTGACAGG 57.087 40.909 1.02 0.00 35.62 4.00
3529 3698 2.952714 AGCTGCATTTGACAGGTCC 58.047 52.632 1.02 0.00 41.87 4.46
3530 3699 0.403271 AGCTGCATTTGACAGGTCCT 59.597 50.000 1.02 0.00 41.87 3.85
3531 3700 1.202976 AGCTGCATTTGACAGGTCCTT 60.203 47.619 1.02 0.00 41.87 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.135960 CCCCTCATTTCTCCCTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
2 3 2.235570 CCCCCTCATTTCTCCCTCC 58.764 63.158 0.00 0.00 0.00 4.30
17 18 3.716872 TCTGAGGAATATCACTTTCCCCC 59.283 47.826 0.00 0.00 43.08 5.40
18 19 5.373812 TTCTGAGGAATATCACTTTCCCC 57.626 43.478 0.00 0.00 43.08 4.81
19 20 7.888250 ATTTTCTGAGGAATATCACTTTCCC 57.112 36.000 0.00 0.00 43.08 3.97
20 21 9.620259 AGTATTTTCTGAGGAATATCACTTTCC 57.380 33.333 0.00 0.00 42.51 3.13
86 87 2.304470 ACCAAGCCAAACACCAGTTTTT 59.696 40.909 0.00 0.00 45.32 1.94
87 88 1.905894 ACCAAGCCAAACACCAGTTTT 59.094 42.857 0.00 0.00 45.32 2.43
89 90 1.480545 GAACCAAGCCAAACACCAGTT 59.519 47.619 0.00 0.00 40.40 3.16
90 91 1.111277 GAACCAAGCCAAACACCAGT 58.889 50.000 0.00 0.00 0.00 4.00
91 92 1.110442 TGAACCAAGCCAAACACCAG 58.890 50.000 0.00 0.00 0.00 4.00
92 93 1.411977 CATGAACCAAGCCAAACACCA 59.588 47.619 0.00 0.00 0.00 4.17
93 94 1.412343 ACATGAACCAAGCCAAACACC 59.588 47.619 0.00 0.00 0.00 4.16
94 95 2.888834 ACATGAACCAAGCCAAACAC 57.111 45.000 0.00 0.00 0.00 3.32
95 96 3.902881 AAACATGAACCAAGCCAAACA 57.097 38.095 0.00 0.00 0.00 2.83
96 97 3.312146 CCAAAACATGAACCAAGCCAAAC 59.688 43.478 0.00 0.00 0.00 2.93
97 98 3.539604 CCAAAACATGAACCAAGCCAAA 58.460 40.909 0.00 0.00 0.00 3.28
98 99 2.158842 CCCAAAACATGAACCAAGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
99 100 1.415659 CCCAAAACATGAACCAAGCCA 59.584 47.619 0.00 0.00 0.00 4.75
100 101 1.877680 GCCCAAAACATGAACCAAGCC 60.878 52.381 0.00 0.00 0.00 4.35
101 102 1.511850 GCCCAAAACATGAACCAAGC 58.488 50.000 0.00 0.00 0.00 4.01
102 103 1.605202 CGGCCCAAAACATGAACCAAG 60.605 52.381 0.00 0.00 0.00 3.61
103 104 0.390860 CGGCCCAAAACATGAACCAA 59.609 50.000 0.00 0.00 0.00 3.67
104 105 2.045280 CGGCCCAAAACATGAACCA 58.955 52.632 0.00 0.00 0.00 3.67
105 106 1.374125 GCGGCCCAAAACATGAACC 60.374 57.895 0.00 0.00 0.00 3.62
106 107 0.885196 TAGCGGCCCAAAACATGAAC 59.115 50.000 0.00 0.00 0.00 3.18
107 108 0.885196 GTAGCGGCCCAAAACATGAA 59.115 50.000 0.00 0.00 0.00 2.57
108 109 0.037590 AGTAGCGGCCCAAAACATGA 59.962 50.000 0.00 0.00 0.00 3.07
109 110 1.400494 GTAGTAGCGGCCCAAAACATG 59.600 52.381 0.00 0.00 0.00 3.21
110 111 1.280998 AGTAGTAGCGGCCCAAAACAT 59.719 47.619 0.00 0.00 0.00 2.71
111 112 0.688487 AGTAGTAGCGGCCCAAAACA 59.312 50.000 0.00 0.00 0.00 2.83
112 113 1.736126 GAAGTAGTAGCGGCCCAAAAC 59.264 52.381 0.00 0.00 0.00 2.43
113 114 1.626825 AGAAGTAGTAGCGGCCCAAAA 59.373 47.619 0.00 0.00 0.00 2.44
114 115 1.272807 AGAAGTAGTAGCGGCCCAAA 58.727 50.000 0.00 0.00 0.00 3.28
115 116 1.272807 AAGAAGTAGTAGCGGCCCAA 58.727 50.000 0.00 0.00 0.00 4.12
116 117 1.206371 GAAAGAAGTAGTAGCGGCCCA 59.794 52.381 0.00 0.00 0.00 5.36
117 118 1.481363 AGAAAGAAGTAGTAGCGGCCC 59.519 52.381 0.00 0.00 0.00 5.80
118 119 2.963548 AGAAAGAAGTAGTAGCGGCC 57.036 50.000 0.00 0.00 0.00 6.13
119 120 4.111198 GGTAAGAAAGAAGTAGTAGCGGC 58.889 47.826 0.00 0.00 0.00 6.53
120 121 4.349501 CGGTAAGAAAGAAGTAGTAGCGG 58.650 47.826 0.00 0.00 0.00 5.52
121 122 4.349501 CCGGTAAGAAAGAAGTAGTAGCG 58.650 47.826 0.00 0.00 33.54 4.26
122 123 4.111198 GCCGGTAAGAAAGAAGTAGTAGC 58.889 47.826 1.90 0.00 0.00 3.58
123 124 5.341617 CAGCCGGTAAGAAAGAAGTAGTAG 58.658 45.833 1.90 0.00 0.00 2.57
124 125 4.381292 GCAGCCGGTAAGAAAGAAGTAGTA 60.381 45.833 1.90 0.00 0.00 1.82
125 126 3.616802 GCAGCCGGTAAGAAAGAAGTAGT 60.617 47.826 1.90 0.00 0.00 2.73
126 127 2.930682 GCAGCCGGTAAGAAAGAAGTAG 59.069 50.000 1.90 0.00 0.00 2.57
127 128 2.300723 TGCAGCCGGTAAGAAAGAAGTA 59.699 45.455 1.90 0.00 0.00 2.24
128 129 1.071699 TGCAGCCGGTAAGAAAGAAGT 59.928 47.619 1.90 0.00 0.00 3.01
129 130 1.734465 CTGCAGCCGGTAAGAAAGAAG 59.266 52.381 0.00 0.00 0.00 2.85
130 131 1.808411 CTGCAGCCGGTAAGAAAGAA 58.192 50.000 0.00 0.00 0.00 2.52
131 132 0.673644 GCTGCAGCCGGTAAGAAAGA 60.674 55.000 28.76 0.00 34.31 2.52
132 133 0.674895 AGCTGCAGCCGGTAAGAAAG 60.675 55.000 34.39 0.00 43.38 2.62
133 134 0.611200 TAGCTGCAGCCGGTAAGAAA 59.389 50.000 34.39 6.64 43.38 2.52
134 135 0.108329 GTAGCTGCAGCCGGTAAGAA 60.108 55.000 34.39 7.71 43.38 2.52
135 136 1.254975 TGTAGCTGCAGCCGGTAAGA 61.255 55.000 34.39 11.33 43.38 2.10
136 137 0.807667 CTGTAGCTGCAGCCGGTAAG 60.808 60.000 34.39 20.27 43.38 2.34
137 138 1.218047 CTGTAGCTGCAGCCGGTAA 59.782 57.895 34.39 15.15 43.38 2.85
138 139 1.254975 TTCTGTAGCTGCAGCCGGTA 61.255 55.000 34.39 18.21 43.38 4.02
139 140 2.513026 CTTCTGTAGCTGCAGCCGGT 62.513 60.000 34.39 19.34 43.38 5.28
140 141 1.812922 CTTCTGTAGCTGCAGCCGG 60.813 63.158 34.39 24.06 43.38 6.13
141 142 2.459442 GCTTCTGTAGCTGCAGCCG 61.459 63.158 34.39 19.98 46.77 5.52
142 143 3.495543 GCTTCTGTAGCTGCAGCC 58.504 61.111 34.39 20.80 46.77 4.85
150 151 1.208293 GGAAGGAGTGGGCTTCTGTAG 59.792 57.143 0.00 0.00 29.10 2.74
151 152 1.203313 AGGAAGGAGTGGGCTTCTGTA 60.203 52.381 0.00 0.00 29.10 2.74
152 153 0.474660 AGGAAGGAGTGGGCTTCTGT 60.475 55.000 0.00 0.00 29.10 3.41
153 154 1.208293 GTAGGAAGGAGTGGGCTTCTG 59.792 57.143 0.00 0.00 29.10 3.02
154 155 1.574263 GTAGGAAGGAGTGGGCTTCT 58.426 55.000 0.00 0.00 29.98 2.85
155 156 0.542333 GGTAGGAAGGAGTGGGCTTC 59.458 60.000 0.00 0.00 0.00 3.86
156 157 0.178873 TGGTAGGAAGGAGTGGGCTT 60.179 55.000 0.00 0.00 0.00 4.35
157 158 0.618968 CTGGTAGGAAGGAGTGGGCT 60.619 60.000 0.00 0.00 0.00 5.19
158 159 1.627297 CCTGGTAGGAAGGAGTGGGC 61.627 65.000 0.00 0.00 37.67 5.36
159 160 1.627297 GCCTGGTAGGAAGGAGTGGG 61.627 65.000 0.00 0.00 37.67 4.61
160 161 1.908483 GCCTGGTAGGAAGGAGTGG 59.092 63.158 0.00 0.00 37.67 4.00
161 162 1.517832 CGCCTGGTAGGAAGGAGTG 59.482 63.158 0.00 0.00 37.67 3.51
162 163 1.686110 CCGCCTGGTAGGAAGGAGT 60.686 63.158 4.63 0.00 37.67 3.85
163 164 3.221222 CCGCCTGGTAGGAAGGAG 58.779 66.667 4.63 0.00 37.67 3.69
173 174 2.124695 GGGCTTCTTACCGCCTGG 60.125 66.667 0.00 0.00 45.57 4.45
174 175 1.002624 TTGGGCTTCTTACCGCCTG 60.003 57.895 0.00 0.00 45.57 4.85
175 176 1.002502 GTTGGGCTTCTTACCGCCT 60.003 57.895 0.00 0.00 45.57 5.52
176 177 2.044555 GGTTGGGCTTCTTACCGCC 61.045 63.158 0.00 0.00 45.55 6.13
177 178 0.891904 TTGGTTGGGCTTCTTACCGC 60.892 55.000 0.00 0.00 33.29 5.68
178 179 0.879090 GTTGGTTGGGCTTCTTACCG 59.121 55.000 0.00 0.00 33.29 4.02
179 180 1.886542 CTGTTGGTTGGGCTTCTTACC 59.113 52.381 0.00 0.00 0.00 2.85
180 181 1.886542 CCTGTTGGTTGGGCTTCTTAC 59.113 52.381 0.00 0.00 0.00 2.34
181 182 1.821666 GCCTGTTGGTTGGGCTTCTTA 60.822 52.381 0.00 0.00 42.31 2.10
182 183 1.115326 GCCTGTTGGTTGGGCTTCTT 61.115 55.000 0.00 0.00 42.31 2.52
183 184 1.531602 GCCTGTTGGTTGGGCTTCT 60.532 57.895 0.00 0.00 42.31 2.85
184 185 2.574018 GGCCTGTTGGTTGGGCTTC 61.574 63.158 0.00 0.00 44.70 3.86
185 186 2.524148 GGCCTGTTGGTTGGGCTT 60.524 61.111 0.00 0.00 44.70 4.35
186 187 4.621087 GGGCCTGTTGGTTGGGCT 62.621 66.667 0.84 0.00 46.53 5.19
187 188 3.218386 TAGGGCCTGTTGGTTGGGC 62.218 63.158 18.53 0.00 46.59 5.36
188 189 1.304134 GTAGGGCCTGTTGGTTGGG 60.304 63.158 18.53 0.00 35.27 4.12
189 190 1.304134 GGTAGGGCCTGTTGGTTGG 60.304 63.158 18.53 0.00 35.27 3.77
190 191 1.304134 GGGTAGGGCCTGTTGGTTG 60.304 63.158 18.53 0.00 37.43 3.77
191 192 1.776710 TGGGTAGGGCCTGTTGGTT 60.777 57.895 18.53 0.00 37.43 3.67
192 193 2.121689 TGGGTAGGGCCTGTTGGT 60.122 61.111 18.53 0.00 37.43 3.67
193 194 2.677228 CTGGGTAGGGCCTGTTGG 59.323 66.667 18.53 0.00 37.43 3.77
194 195 2.677228 CCTGGGTAGGGCCTGTTG 59.323 66.667 18.53 1.53 40.63 3.33
195 196 3.339093 GCCTGGGTAGGGCCTGTT 61.339 66.667 18.53 0.00 44.75 3.16
211 212 4.814294 CGTGGTGGTAGGAGCCGC 62.814 72.222 0.00 0.00 38.26 6.53
212 213 4.814294 GCGTGGTGGTAGGAGCCG 62.814 72.222 0.00 0.00 0.00 5.52
213 214 4.468689 GGCGTGGTGGTAGGAGCC 62.469 72.222 0.00 0.00 37.61 4.70
214 215 4.468689 GGGCGTGGTGGTAGGAGC 62.469 72.222 0.00 0.00 0.00 4.70
215 216 4.143333 CGGGCGTGGTGGTAGGAG 62.143 72.222 0.00 0.00 0.00 3.69
302 303 4.115199 AGAGGTGGGATTGGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
303 304 2.124570 CAGAGGTGGGATTGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
304 305 2.825836 GCAGAGGTGGGATTGGCG 60.826 66.667 0.00 0.00 0.00 5.69
305 306 1.751927 CAGCAGAGGTGGGATTGGC 60.752 63.158 0.00 0.00 0.00 4.52
306 307 1.751927 GCAGCAGAGGTGGGATTGG 60.752 63.158 0.00 0.00 0.00 3.16
307 308 1.751927 GGCAGCAGAGGTGGGATTG 60.752 63.158 0.00 0.00 0.00 2.67
308 309 2.679716 GGCAGCAGAGGTGGGATT 59.320 61.111 0.00 0.00 0.00 3.01
309 310 3.415087 GGGCAGCAGAGGTGGGAT 61.415 66.667 0.00 0.00 0.00 3.85
360 361 4.148825 AGCTTGGAGCCGCCGTAG 62.149 66.667 0.00 0.00 43.77 3.51
361 362 4.143333 GAGCTTGGAGCCGCCGTA 62.143 66.667 0.00 0.00 43.77 4.02
368 369 3.695747 GAGGGCTGGAGCTTGGAGC 62.696 68.421 0.00 4.42 42.84 4.70
369 370 1.845627 TTGAGGGCTGGAGCTTGGAG 61.846 60.000 0.00 0.00 41.70 3.86
370 371 1.847506 TTGAGGGCTGGAGCTTGGA 60.848 57.895 0.00 0.00 41.70 3.53
371 372 1.676967 GTTGAGGGCTGGAGCTTGG 60.677 63.158 0.00 0.00 41.70 3.61
372 373 1.676967 GGTTGAGGGCTGGAGCTTG 60.677 63.158 0.00 0.00 41.70 4.01
373 374 2.759795 GGTTGAGGGCTGGAGCTT 59.240 61.111 0.00 0.00 41.70 3.74
374 375 3.334054 GGGTTGAGGGCTGGAGCT 61.334 66.667 0.00 0.00 41.70 4.09
375 376 4.785453 CGGGTTGAGGGCTGGAGC 62.785 72.222 0.00 0.00 41.14 4.70
376 377 3.322466 ACGGGTTGAGGGCTGGAG 61.322 66.667 0.00 0.00 0.00 3.86
377 378 3.636231 CACGGGTTGAGGGCTGGA 61.636 66.667 0.00 0.00 0.00 3.86
378 379 3.636231 TCACGGGTTGAGGGCTGG 61.636 66.667 0.00 0.00 0.00 4.85
379 380 2.358737 GTCACGGGTTGAGGGCTG 60.359 66.667 0.00 0.00 33.71 4.85
380 381 3.637273 GGTCACGGGTTGAGGGCT 61.637 66.667 0.00 0.00 33.71 5.19
381 382 4.717313 GGGTCACGGGTTGAGGGC 62.717 72.222 0.00 0.00 33.71 5.19
382 383 2.928396 AGGGTCACGGGTTGAGGG 60.928 66.667 0.00 0.00 33.71 4.30
383 384 2.663196 GAGGGTCACGGGTTGAGG 59.337 66.667 0.00 0.00 33.71 3.86
384 385 2.261671 CGAGGGTCACGGGTTGAG 59.738 66.667 0.00 0.00 33.71 3.02
385 386 3.998672 GCGAGGGTCACGGGTTGA 61.999 66.667 0.00 0.00 0.00 3.18
406 407 4.977126 GAGGTATCGTCGGCGGCG 62.977 72.222 29.88 29.88 38.89 6.46
407 408 4.642542 GGAGGTATCGTCGGCGGC 62.643 72.222 10.62 3.25 38.89 6.53
408 409 2.905807 GAGGAGGTATCGTCGGCGG 61.906 68.421 10.62 0.00 38.89 6.13
409 410 2.638154 GAGGAGGTATCGTCGGCG 59.362 66.667 1.15 1.15 39.92 6.46
410 411 2.905807 CGGAGGAGGTATCGTCGGC 61.906 68.421 0.00 0.00 40.51 5.54
411 412 2.905807 GCGGAGGAGGTATCGTCGG 61.906 68.421 0.00 2.35 40.51 4.79
412 413 2.638154 GCGGAGGAGGTATCGTCG 59.362 66.667 0.00 0.00 40.51 5.12
413 414 2.638154 CGCGGAGGAGGTATCGTC 59.362 66.667 0.00 0.00 39.19 4.20
414 415 3.593794 GCGCGGAGGAGGTATCGT 61.594 66.667 8.83 0.00 0.00 3.73
415 416 4.344474 GGCGCGGAGGAGGTATCG 62.344 72.222 8.83 0.00 0.00 2.92
416 417 3.992317 GGGCGCGGAGGAGGTATC 61.992 72.222 8.83 0.00 0.00 2.24
435 436 3.056328 GAGGTCCTTGGCGGTTGC 61.056 66.667 0.00 0.00 41.71 4.17
436 437 1.228124 TTGAGGTCCTTGGCGGTTG 60.228 57.895 0.00 0.00 0.00 3.77
437 438 1.228154 GTTGAGGTCCTTGGCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
438 439 2.430367 GTTGAGGTCCTTGGCGGT 59.570 61.111 0.00 0.00 0.00 5.68
439 440 2.359975 GGTTGAGGTCCTTGGCGG 60.360 66.667 0.00 0.00 0.00 6.13
440 441 2.742372 CGGTTGAGGTCCTTGGCG 60.742 66.667 0.00 0.00 0.00 5.69
441 442 3.056328 GCGGTTGAGGTCCTTGGC 61.056 66.667 0.00 0.00 0.00 4.52
442 443 1.672356 CTGCGGTTGAGGTCCTTGG 60.672 63.158 0.00 0.00 0.00 3.61
443 444 1.672356 CCTGCGGTTGAGGTCCTTG 60.672 63.158 0.00 0.00 0.00 3.61
444 445 2.750350 CCTGCGGTTGAGGTCCTT 59.250 61.111 0.00 0.00 0.00 3.36
445 446 4.021925 GCCTGCGGTTGAGGTCCT 62.022 66.667 0.00 0.00 32.60 3.85
458 459 4.821589 GTCGAAGAGGGCGGCCTG 62.822 72.222 38.01 21.25 36.95 4.85
461 462 4.516195 GAGGTCGAAGAGGGCGGC 62.516 72.222 0.00 0.00 36.95 6.53
462 463 2.356818 GATGAGGTCGAAGAGGGCGG 62.357 65.000 0.00 0.00 36.95 6.13
463 464 1.066587 GATGAGGTCGAAGAGGGCG 59.933 63.158 0.00 0.00 36.95 6.13
464 465 1.045911 AGGATGAGGTCGAAGAGGGC 61.046 60.000 0.00 0.00 36.95 5.19
465 466 1.036707 GAGGATGAGGTCGAAGAGGG 58.963 60.000 0.00 0.00 36.95 4.30
466 467 1.680735 CAGAGGATGAGGTCGAAGAGG 59.319 57.143 0.00 0.00 36.95 3.69
467 468 1.680735 CCAGAGGATGAGGTCGAAGAG 59.319 57.143 0.00 0.00 36.95 2.85
468 469 1.006043 ACCAGAGGATGAGGTCGAAGA 59.994 52.381 0.00 0.00 0.00 2.87
469 470 1.479709 ACCAGAGGATGAGGTCGAAG 58.520 55.000 0.00 0.00 0.00 3.79
470 471 2.820728 TACCAGAGGATGAGGTCGAA 57.179 50.000 0.00 0.00 36.87 3.71
471 472 2.820728 TTACCAGAGGATGAGGTCGA 57.179 50.000 0.00 0.00 36.87 4.20
472 473 2.959030 TGATTACCAGAGGATGAGGTCG 59.041 50.000 0.00 0.00 36.87 4.79
473 474 5.070981 TGATTGATTACCAGAGGATGAGGTC 59.929 44.000 0.00 0.00 36.87 3.85
474 475 4.971282 TGATTGATTACCAGAGGATGAGGT 59.029 41.667 0.00 0.00 39.41 3.85
475 476 5.557576 TGATTGATTACCAGAGGATGAGG 57.442 43.478 0.00 0.00 0.00 3.86
476 477 5.762218 GGTTGATTGATTACCAGAGGATGAG 59.238 44.000 0.00 0.00 32.12 2.90
477 478 5.397899 GGGTTGATTGATTACCAGAGGATGA 60.398 44.000 0.00 0.00 33.51 2.92
478 479 4.823989 GGGTTGATTGATTACCAGAGGATG 59.176 45.833 0.00 0.00 33.51 3.51
479 480 4.728860 AGGGTTGATTGATTACCAGAGGAT 59.271 41.667 0.00 0.00 33.51 3.24
480 481 4.111577 AGGGTTGATTGATTACCAGAGGA 58.888 43.478 0.00 0.00 33.51 3.71
481 482 4.510167 AGGGTTGATTGATTACCAGAGG 57.490 45.455 0.00 0.00 33.51 3.69
482 483 6.840780 AAAAGGGTTGATTGATTACCAGAG 57.159 37.500 0.00 0.00 33.51 3.35
483 484 8.112822 TGATAAAAGGGTTGATTGATTACCAGA 58.887 33.333 0.00 0.00 33.51 3.86
484 485 8.190784 GTGATAAAAGGGTTGATTGATTACCAG 58.809 37.037 0.00 0.00 33.51 4.00
485 486 7.123547 GGTGATAAAAGGGTTGATTGATTACCA 59.876 37.037 0.00 0.00 33.51 3.25
486 487 7.342026 AGGTGATAAAAGGGTTGATTGATTACC 59.658 37.037 0.00 0.00 0.00 2.85
487 488 8.190784 CAGGTGATAAAAGGGTTGATTGATTAC 58.809 37.037 0.00 0.00 0.00 1.89
488 489 8.112822 TCAGGTGATAAAAGGGTTGATTGATTA 58.887 33.333 0.00 0.00 0.00 1.75
489 490 6.953520 TCAGGTGATAAAAGGGTTGATTGATT 59.046 34.615 0.00 0.00 0.00 2.57
490 491 6.493166 TCAGGTGATAAAAGGGTTGATTGAT 58.507 36.000 0.00 0.00 0.00 2.57
491 492 5.886609 TCAGGTGATAAAAGGGTTGATTGA 58.113 37.500 0.00 0.00 0.00 2.57
492 493 6.588719 TTCAGGTGATAAAAGGGTTGATTG 57.411 37.500 0.00 0.00 0.00 2.67
493 494 8.917088 CATATTCAGGTGATAAAAGGGTTGATT 58.083 33.333 0.00 0.00 0.00 2.57
494 495 7.014615 GCATATTCAGGTGATAAAAGGGTTGAT 59.985 37.037 0.00 0.00 0.00 2.57
495 496 6.321181 GCATATTCAGGTGATAAAAGGGTTGA 59.679 38.462 0.00 0.00 0.00 3.18
496 497 6.461509 GGCATATTCAGGTGATAAAAGGGTTG 60.462 42.308 0.00 0.00 0.00 3.77
497 498 5.598417 GGCATATTCAGGTGATAAAAGGGTT 59.402 40.000 0.00 0.00 0.00 4.11
498 499 5.140454 GGCATATTCAGGTGATAAAAGGGT 58.860 41.667 0.00 0.00 0.00 4.34
499 500 5.139727 TGGCATATTCAGGTGATAAAAGGG 58.860 41.667 0.00 0.00 0.00 3.95
500 501 6.713762 TTGGCATATTCAGGTGATAAAAGG 57.286 37.500 0.00 0.00 0.00 3.11
501 502 9.252962 GATTTTGGCATATTCAGGTGATAAAAG 57.747 33.333 0.00 0.00 0.00 2.27
502 503 8.980596 AGATTTTGGCATATTCAGGTGATAAAA 58.019 29.630 0.00 0.00 0.00 1.52
503 504 8.415553 CAGATTTTGGCATATTCAGGTGATAAA 58.584 33.333 0.00 0.00 0.00 1.40
504 505 7.560991 ACAGATTTTGGCATATTCAGGTGATAA 59.439 33.333 0.00 0.00 0.00 1.75
505 506 7.062322 ACAGATTTTGGCATATTCAGGTGATA 58.938 34.615 0.00 0.00 0.00 2.15
506 507 5.895534 ACAGATTTTGGCATATTCAGGTGAT 59.104 36.000 0.00 0.00 0.00 3.06
507 508 5.263599 ACAGATTTTGGCATATTCAGGTGA 58.736 37.500 0.00 0.00 0.00 4.02
508 509 5.587388 ACAGATTTTGGCATATTCAGGTG 57.413 39.130 0.00 0.00 0.00 4.00
509 510 6.426587 ACTACAGATTTTGGCATATTCAGGT 58.573 36.000 0.00 0.00 0.00 4.00
510 511 6.949352 ACTACAGATTTTGGCATATTCAGG 57.051 37.500 0.00 0.00 0.00 3.86
511 512 8.668510 AGTACTACAGATTTTGGCATATTCAG 57.331 34.615 0.00 0.00 0.00 3.02
515 516 9.547753 CACTTAGTACTACAGATTTTGGCATAT 57.452 33.333 0.91 0.00 0.00 1.78
516 517 8.537016 ACACTTAGTACTACAGATTTTGGCATA 58.463 33.333 0.91 0.00 0.00 3.14
517 518 7.394816 ACACTTAGTACTACAGATTTTGGCAT 58.605 34.615 0.91 0.00 0.00 4.40
518 519 6.765403 ACACTTAGTACTACAGATTTTGGCA 58.235 36.000 0.91 0.00 0.00 4.92
519 520 7.010275 GCTACACTTAGTACTACAGATTTTGGC 59.990 40.741 0.91 0.00 0.00 4.52
520 521 8.251721 AGCTACACTTAGTACTACAGATTTTGG 58.748 37.037 0.91 0.00 0.00 3.28
521 522 9.291664 GAGCTACACTTAGTACTACAGATTTTG 57.708 37.037 0.91 1.69 0.00 2.44
522 523 8.182881 CGAGCTACACTTAGTACTACAGATTTT 58.817 37.037 0.91 0.00 0.00 1.82
523 524 7.336427 ACGAGCTACACTTAGTACTACAGATTT 59.664 37.037 0.91 0.00 0.00 2.17
524 525 6.822676 ACGAGCTACACTTAGTACTACAGATT 59.177 38.462 0.91 0.42 0.00 2.40
525 526 6.347696 ACGAGCTACACTTAGTACTACAGAT 58.652 40.000 0.91 0.00 0.00 2.90
526 527 5.728471 ACGAGCTACACTTAGTACTACAGA 58.272 41.667 0.91 0.00 0.00 3.41
527 528 6.249359 CAACGAGCTACACTTAGTACTACAG 58.751 44.000 0.91 6.35 0.00 2.74
528 529 5.391310 GCAACGAGCTACACTTAGTACTACA 60.391 44.000 0.91 0.00 41.15 2.74
529 530 5.027099 GCAACGAGCTACACTTAGTACTAC 58.973 45.833 0.91 0.00 41.15 2.73
530 531 4.095483 GGCAACGAGCTACACTTAGTACTA 59.905 45.833 0.00 0.00 44.79 1.82
531 532 3.119566 GGCAACGAGCTACACTTAGTACT 60.120 47.826 0.00 0.00 44.79 2.73
532 533 3.119566 AGGCAACGAGCTACACTTAGTAC 60.120 47.826 0.00 0.00 44.79 2.73
533 534 3.087031 AGGCAACGAGCTACACTTAGTA 58.913 45.455 0.00 0.00 44.79 1.82
534 535 1.893801 AGGCAACGAGCTACACTTAGT 59.106 47.619 0.00 0.00 44.79 2.24
535 536 2.094700 TGAGGCAACGAGCTACACTTAG 60.095 50.000 0.00 0.00 44.79 2.18
536 537 1.890489 TGAGGCAACGAGCTACACTTA 59.110 47.619 0.00 0.00 44.79 2.24
537 538 0.679505 TGAGGCAACGAGCTACACTT 59.320 50.000 0.00 0.00 44.79 3.16
538 539 0.679505 TTGAGGCAACGAGCTACACT 59.320 50.000 0.00 0.00 44.79 3.55
539 540 0.790814 GTTGAGGCAACGAGCTACAC 59.209 55.000 0.00 0.00 44.79 2.90
540 541 3.210857 GTTGAGGCAACGAGCTACA 57.789 52.632 0.00 0.00 44.79 2.74
548 549 0.527385 TGCAAAAGCGTTGAGGCAAC 60.527 50.000 7.29 0.00 40.54 4.17
549 550 0.388659 ATGCAAAAGCGTTGAGGCAA 59.611 45.000 9.79 0.00 34.64 4.52
550 551 0.318869 CATGCAAAAGCGTTGAGGCA 60.319 50.000 7.29 7.97 35.54 4.75
551 552 1.620413 GCATGCAAAAGCGTTGAGGC 61.620 55.000 14.21 2.74 0.00 4.70
552 553 0.038892 AGCATGCAAAAGCGTTGAGG 60.039 50.000 21.98 0.00 35.48 3.86
553 554 2.617250 TAGCATGCAAAAGCGTTGAG 57.383 45.000 21.98 0.00 35.48 3.02
554 555 3.361794 TTTAGCATGCAAAAGCGTTGA 57.638 38.095 21.98 0.00 35.48 3.18
555 556 4.650545 AATTTAGCATGCAAAAGCGTTG 57.349 36.364 21.98 0.00 35.48 4.10
556 557 5.220453 GCATAATTTAGCATGCAAAAGCGTT 60.220 36.000 21.98 11.17 45.51 4.84
557 558 4.268405 GCATAATTTAGCATGCAAAAGCGT 59.732 37.500 21.98 0.00 45.51 5.07
558 559 4.754332 GCATAATTTAGCATGCAAAAGCG 58.246 39.130 21.98 9.46 45.51 4.68
565 566 5.008415 ACTCAGACTGCATAATTTAGCATGC 59.992 40.000 10.51 10.51 46.21 4.06
566 567 6.615264 ACTCAGACTGCATAATTTAGCATG 57.385 37.500 0.00 0.00 40.42 4.06
567 568 7.504403 AGTACTCAGACTGCATAATTTAGCAT 58.496 34.615 0.00 0.00 40.42 3.79
568 569 6.878317 AGTACTCAGACTGCATAATTTAGCA 58.122 36.000 0.00 4.69 39.25 3.49
569 570 7.625553 CAAGTACTCAGACTGCATAATTTAGC 58.374 38.462 0.00 0.00 0.00 3.09
570 571 7.493971 AGCAAGTACTCAGACTGCATAATTTAG 59.506 37.037 16.62 0.00 0.00 1.85
571 572 7.331026 AGCAAGTACTCAGACTGCATAATTTA 58.669 34.615 16.62 0.00 0.00 1.40
572 573 6.176183 AGCAAGTACTCAGACTGCATAATTT 58.824 36.000 16.62 0.00 0.00 1.82
573 574 5.738909 AGCAAGTACTCAGACTGCATAATT 58.261 37.500 16.62 0.00 0.00 1.40
574 575 5.350504 AGCAAGTACTCAGACTGCATAAT 57.649 39.130 16.62 0.00 0.00 1.28
575 576 4.808414 AGCAAGTACTCAGACTGCATAA 57.192 40.909 16.62 0.00 0.00 1.90
576 577 4.808414 AAGCAAGTACTCAGACTGCATA 57.192 40.909 16.62 0.00 0.00 3.14
577 578 3.692257 AAGCAAGTACTCAGACTGCAT 57.308 42.857 16.62 4.16 0.00 3.96
578 579 4.600692 TTAAGCAAGTACTCAGACTGCA 57.399 40.909 16.62 0.00 0.00 4.41
579 580 5.171476 TCATTAAGCAAGTACTCAGACTGC 58.829 41.667 8.18 8.18 0.00 4.40
580 581 6.257411 CCATCATTAAGCAAGTACTCAGACTG 59.743 42.308 0.00 0.00 0.00 3.51
581 582 6.070538 ACCATCATTAAGCAAGTACTCAGACT 60.071 38.462 0.00 0.00 0.00 3.24
582 583 6.109359 ACCATCATTAAGCAAGTACTCAGAC 58.891 40.000 0.00 0.00 0.00 3.51
583 584 6.299805 ACCATCATTAAGCAAGTACTCAGA 57.700 37.500 0.00 0.00 0.00 3.27
584 585 7.041721 TGTACCATCATTAAGCAAGTACTCAG 58.958 38.462 0.00 0.00 31.97 3.35
585 586 6.941857 TGTACCATCATTAAGCAAGTACTCA 58.058 36.000 0.00 0.00 31.97 3.41
586 587 9.712305 ATATGTACCATCATTAAGCAAGTACTC 57.288 33.333 0.00 0.00 31.97 2.59
587 588 9.494271 CATATGTACCATCATTAAGCAAGTACT 57.506 33.333 0.00 0.00 31.97 2.73
588 589 8.721478 CCATATGTACCATCATTAAGCAAGTAC 58.279 37.037 1.24 0.00 0.00 2.73
589 590 8.436778 ACCATATGTACCATCATTAAGCAAGTA 58.563 33.333 1.24 0.00 0.00 2.24
590 591 7.290061 ACCATATGTACCATCATTAAGCAAGT 58.710 34.615 1.24 0.00 0.00 3.16
591 592 7.750229 ACCATATGTACCATCATTAAGCAAG 57.250 36.000 1.24 0.00 0.00 4.01
592 593 7.014134 CCAACCATATGTACCATCATTAAGCAA 59.986 37.037 1.24 0.00 0.00 3.91
593 594 6.489700 CCAACCATATGTACCATCATTAAGCA 59.510 38.462 1.24 0.00 0.00 3.91
594 595 6.570378 GCCAACCATATGTACCATCATTAAGC 60.570 42.308 1.24 0.00 0.00 3.09
595 596 6.716628 AGCCAACCATATGTACCATCATTAAG 59.283 38.462 1.24 0.00 0.00 1.85
596 597 6.609876 AGCCAACCATATGTACCATCATTAA 58.390 36.000 1.24 0.00 0.00 1.40
597 598 6.199557 AGCCAACCATATGTACCATCATTA 57.800 37.500 1.24 0.00 0.00 1.90
598 599 5.065613 AGCCAACCATATGTACCATCATT 57.934 39.130 1.24 0.00 0.00 2.57
599 600 4.729552 AGCCAACCATATGTACCATCAT 57.270 40.909 1.24 0.00 0.00 2.45
600 601 4.904853 TCTAGCCAACCATATGTACCATCA 59.095 41.667 1.24 0.00 0.00 3.07
601 602 5.483685 TCTAGCCAACCATATGTACCATC 57.516 43.478 1.24 0.00 0.00 3.51
602 603 7.402941 TCATATCTAGCCAACCATATGTACCAT 59.597 37.037 1.24 0.00 32.96 3.55
603 604 6.728632 TCATATCTAGCCAACCATATGTACCA 59.271 38.462 1.24 0.00 32.96 3.25
604 605 7.182817 TCATATCTAGCCAACCATATGTACC 57.817 40.000 1.24 0.00 32.96 3.34
605 606 7.712639 CCATCATATCTAGCCAACCATATGTAC 59.287 40.741 1.24 0.00 32.96 2.90
606 607 7.402941 ACCATCATATCTAGCCAACCATATGTA 59.597 37.037 1.24 0.00 32.96 2.29
607 608 6.216251 ACCATCATATCTAGCCAACCATATGT 59.784 38.462 1.24 0.00 32.96 2.29
608 609 6.656902 ACCATCATATCTAGCCAACCATATG 58.343 40.000 0.00 0.00 32.58 1.78
609 610 6.898171 ACCATCATATCTAGCCAACCATAT 57.102 37.500 0.00 0.00 0.00 1.78
610 611 6.728632 TGTACCATCATATCTAGCCAACCATA 59.271 38.462 0.00 0.00 0.00 2.74
611 612 5.547666 TGTACCATCATATCTAGCCAACCAT 59.452 40.000 0.00 0.00 0.00 3.55
612 613 4.904853 TGTACCATCATATCTAGCCAACCA 59.095 41.667 0.00 0.00 0.00 3.67
613 614 5.482908 CTGTACCATCATATCTAGCCAACC 58.517 45.833 0.00 0.00 0.00 3.77
614 615 5.482908 CCTGTACCATCATATCTAGCCAAC 58.517 45.833 0.00 0.00 0.00 3.77
615 616 4.020218 GCCTGTACCATCATATCTAGCCAA 60.020 45.833 0.00 0.00 0.00 4.52
616 617 3.515502 GCCTGTACCATCATATCTAGCCA 59.484 47.826 0.00 0.00 0.00 4.75
617 618 3.772025 AGCCTGTACCATCATATCTAGCC 59.228 47.826 0.00 0.00 0.00 3.93
618 619 5.413309 AAGCCTGTACCATCATATCTAGC 57.587 43.478 0.00 0.00 0.00 3.42
619 620 6.997655 TCAAAGCCTGTACCATCATATCTAG 58.002 40.000 0.00 0.00 0.00 2.43
620 621 6.519043 GCTCAAAGCCTGTACCATCATATCTA 60.519 42.308 0.00 0.00 34.48 1.98
621 622 5.744300 GCTCAAAGCCTGTACCATCATATCT 60.744 44.000 0.00 0.00 34.48 1.98
622 623 4.453819 GCTCAAAGCCTGTACCATCATATC 59.546 45.833 0.00 0.00 34.48 1.63
623 624 4.141413 TGCTCAAAGCCTGTACCATCATAT 60.141 41.667 0.00 0.00 41.51 1.78
624 625 3.199727 TGCTCAAAGCCTGTACCATCATA 59.800 43.478 0.00 0.00 41.51 2.15
684 685 0.032678 CCGTGCTCATACTGCCTAGG 59.967 60.000 3.67 3.67 0.00 3.02
685 686 0.032678 CCCGTGCTCATACTGCCTAG 59.967 60.000 0.00 0.00 0.00 3.02
688 689 1.815421 CACCCGTGCTCATACTGCC 60.815 63.158 0.00 0.00 0.00 4.85
701 702 4.012895 GCAACGTGAGCACACCCG 62.013 66.667 8.77 0.59 43.34 5.28
732 733 2.005451 GAAATCGCACACAGCAGAGAT 58.995 47.619 0.00 0.00 46.13 2.75
816 825 4.620589 AGAGGTGCATAGATGAGAATGG 57.379 45.455 0.00 0.00 0.00 3.16
854 863 5.921004 AGCTTAAATCTCGCAATGATCTC 57.079 39.130 0.00 0.00 0.00 2.75
933 942 1.595382 AAGAACAGCAGCGCGACTT 60.595 52.632 12.10 0.00 0.00 3.01
937 946 3.720193 AGCAAGAACAGCAGCGCG 61.720 61.111 0.00 0.00 0.00 6.86
982 992 2.798148 ATCACGGCCGGAGTGGAAAC 62.798 60.000 31.76 0.00 42.00 2.78
1100 1112 2.119495 GGAGCTGGGGATGTTAAGAGA 58.881 52.381 0.00 0.00 0.00 3.10
1153 1166 1.202639 ACACGCACCATCTTGAACTGA 60.203 47.619 0.00 0.00 0.00 3.41
1206 1219 5.631119 TGGTCATAGTTATGATCCGAGAGA 58.369 41.667 9.32 0.00 43.82 3.10
1212 1225 8.621532 TGCTTAATTGGTCATAGTTATGATCC 57.378 34.615 9.32 10.26 43.82 3.36
1214 1227 7.175641 GGCTGCTTAATTGGTCATAGTTATGAT 59.824 37.037 5.22 0.00 43.82 2.45
1216 1229 6.566564 CGGCTGCTTAATTGGTCATAGTTATG 60.567 42.308 0.00 0.00 35.04 1.90
1223 1236 0.740737 GCGGCTGCTTAATTGGTCAT 59.259 50.000 11.21 0.00 38.39 3.06
1226 1239 3.051392 GCGCGGCTGCTTAATTGGT 62.051 57.895 17.03 0.00 39.65 3.67
1230 1243 3.508840 GTGGCGCGGCTGCTTAAT 61.509 61.111 33.23 0.00 39.65 1.40
1262 1275 4.836175 ACCACAAGAATAAAAATCGGGGTT 59.164 37.500 0.00 0.00 0.00 4.11
1264 1277 5.167845 CAACCACAAGAATAAAAATCGGGG 58.832 41.667 0.00 0.00 0.00 5.73
1267 1280 9.419737 CAAAAACAACCACAAGAATAAAAATCG 57.580 29.630 0.00 0.00 0.00 3.34
1277 1291 3.862642 GCACACCAAAAACAACCACAAGA 60.863 43.478 0.00 0.00 0.00 3.02
1278 1292 2.414825 GCACACCAAAAACAACCACAAG 59.585 45.455 0.00 0.00 0.00 3.16
1310 1331 0.107945 CAACACCTAGGAGCTCCAGC 60.108 60.000 33.90 8.02 42.49 4.85
1474 1496 8.773645 CACAAAGTATATCACAGAACTGAACAA 58.226 33.333 8.87 0.00 0.00 2.83
1727 1761 9.646522 AATTAGTTCATAGCAAGGACCATAAAT 57.353 29.630 0.00 0.00 0.00 1.40
1926 2043 9.494479 CAAGCATCTGTTACAACTGTAATATTG 57.506 33.333 5.64 5.66 41.85 1.90
2061 2180 1.484444 GGGCCACAGAAGTCCTGAGT 61.484 60.000 4.39 0.00 45.78 3.41
2062 2181 1.298014 GGGCCACAGAAGTCCTGAG 59.702 63.158 4.39 0.00 45.78 3.35
2085 2204 8.658840 AAAATTTACCATAAACAGCTAAGGGA 57.341 30.769 0.00 0.00 0.00 4.20
2266 2386 7.286546 TCCCAAAAAGCGGATCAATTGATATTA 59.713 33.333 20.75 0.00 34.37 0.98
2291 2412 2.693069 ACAGCAACTACATCAGCACTC 58.307 47.619 0.00 0.00 0.00 3.51
2510 2638 8.596781 ACTGTTATAGTATCTCAGAAACCTGT 57.403 34.615 16.39 3.05 38.04 4.00
2526 2654 6.975197 TCTGAAGCGAATTGAGACTGTTATAG 59.025 38.462 0.00 0.00 0.00 1.31
2530 2658 3.995199 TCTGAAGCGAATTGAGACTGTT 58.005 40.909 0.00 0.00 0.00 3.16
2556 2691 4.884247 AGTTAGTCCTGAAGTGTAACAGC 58.116 43.478 0.00 0.00 41.43 4.40
2590 2725 2.612212 ACAAGTCAAAGTAGCACCAACG 59.388 45.455 0.00 0.00 0.00 4.10
2655 2790 8.790718 CATCAATCCCATTATTCTGAAACCTAG 58.209 37.037 0.00 0.00 0.00 3.02
2886 3033 2.849880 CAATACCAATTGGGCTGTCG 57.150 50.000 27.89 7.84 42.05 4.35
2905 3052 1.520787 GCTGCAGCATTTCATGGCC 60.521 57.895 33.36 0.00 41.59 5.36
2986 3133 9.120538 AGTGTTTTCAAGTGTAACAGACAATAT 57.879 29.630 0.00 0.00 40.66 1.28
3281 3444 5.843019 AGGAAAATCTGAAGTGTTCCCTA 57.157 39.130 0.00 0.00 38.85 3.53
3366 3529 1.282157 GGGTGAATTGCAGTAGAGGGT 59.718 52.381 0.00 0.00 0.00 4.34
3414 3583 5.830991 ACAGCAGGAAACAAAATAAGGTACA 59.169 36.000 0.00 0.00 0.00 2.90
3428 3597 2.265367 TCATGGGACTACAGCAGGAAA 58.735 47.619 0.00 0.00 0.00 3.13
3433 3602 3.173151 TCTCTTTCATGGGACTACAGCA 58.827 45.455 0.00 0.00 0.00 4.41
3442 3611 4.578105 GCTGTAAAGGATCTCTTTCATGGG 59.422 45.833 11.11 3.36 43.98 4.00
3443 3612 4.578105 GGCTGTAAAGGATCTCTTTCATGG 59.422 45.833 11.11 4.58 43.98 3.66
3444 3613 5.188434 TGGCTGTAAAGGATCTCTTTCATG 58.812 41.667 11.11 0.00 43.98 3.07
3445 3614 5.441718 TGGCTGTAAAGGATCTCTTTCAT 57.558 39.130 11.11 0.00 43.98 2.57
3446 3615 4.908601 TGGCTGTAAAGGATCTCTTTCA 57.091 40.909 11.11 9.10 43.98 2.69
3447 3616 5.249420 AGTTGGCTGTAAAGGATCTCTTTC 58.751 41.667 11.11 6.09 43.98 2.62
3448 3617 5.248380 AGTTGGCTGTAAAGGATCTCTTT 57.752 39.130 12.09 12.09 46.49 2.52
3449 3618 4.917906 AGTTGGCTGTAAAGGATCTCTT 57.082 40.909 0.00 0.00 37.28 2.85
3450 3619 6.156949 TCAATAGTTGGCTGTAAAGGATCTCT 59.843 38.462 0.00 0.00 0.00 3.10
3451 3620 6.349300 TCAATAGTTGGCTGTAAAGGATCTC 58.651 40.000 0.00 0.00 0.00 2.75
3452 3621 6.313519 TCAATAGTTGGCTGTAAAGGATCT 57.686 37.500 0.00 0.00 0.00 2.75
3453 3622 5.008118 GCTCAATAGTTGGCTGTAAAGGATC 59.992 44.000 0.00 0.00 0.00 3.36
3454 3623 4.884164 GCTCAATAGTTGGCTGTAAAGGAT 59.116 41.667 0.00 0.00 0.00 3.24
3455 3624 4.019321 AGCTCAATAGTTGGCTGTAAAGGA 60.019 41.667 5.33 0.00 36.35 3.36
3456 3625 4.095483 CAGCTCAATAGTTGGCTGTAAAGG 59.905 45.833 17.42 1.28 43.62 3.11
3457 3626 4.437930 GCAGCTCAATAGTTGGCTGTAAAG 60.438 45.833 22.23 8.06 46.91 1.85
3458 3627 3.440173 GCAGCTCAATAGTTGGCTGTAAA 59.560 43.478 22.23 0.00 46.91 2.01
3459 3628 3.009723 GCAGCTCAATAGTTGGCTGTAA 58.990 45.455 22.23 0.00 46.91 2.41
3460 3629 2.027285 TGCAGCTCAATAGTTGGCTGTA 60.027 45.455 22.23 18.60 46.91 2.74
3461 3630 1.271543 TGCAGCTCAATAGTTGGCTGT 60.272 47.619 22.23 0.00 46.91 4.40
3463 3632 1.457346 GTGCAGCTCAATAGTTGGCT 58.543 50.000 0.00 0.00 37.57 4.75
3464 3633 0.453390 GGTGCAGCTCAATAGTTGGC 59.547 55.000 9.07 0.00 34.71 4.52
3465 3634 2.012673 GAGGTGCAGCTCAATAGTTGG 58.987 52.381 34.86 0.00 34.71 3.77
3466 3635 2.012673 GGAGGTGCAGCTCAATAGTTG 58.987 52.381 38.37 0.00 37.04 3.16
3467 3636 1.912043 AGGAGGTGCAGCTCAATAGTT 59.088 47.619 38.37 18.45 0.00 2.24
3468 3637 1.209019 CAGGAGGTGCAGCTCAATAGT 59.791 52.381 38.37 19.42 0.00 2.12
3469 3638 1.950828 CAGGAGGTGCAGCTCAATAG 58.049 55.000 38.37 23.90 0.00 1.73
3480 3649 4.824479 ATTTTATTTTGGGCAGGAGGTG 57.176 40.909 0.00 0.00 0.00 4.00
3481 3650 6.943899 TTTATTTTATTTTGGGCAGGAGGT 57.056 33.333 0.00 0.00 0.00 3.85
3498 3667 9.656040 TGTCAAATGCAGCTCAATATTTTATTT 57.344 25.926 0.00 0.00 0.00 1.40
3499 3668 9.309516 CTGTCAAATGCAGCTCAATATTTTATT 57.690 29.630 0.00 0.00 0.00 1.40
3500 3669 7.924412 CCTGTCAAATGCAGCTCAATATTTTAT 59.076 33.333 0.00 0.00 32.93 1.40
3501 3670 7.093814 ACCTGTCAAATGCAGCTCAATATTTTA 60.094 33.333 0.00 0.00 32.93 1.52
3502 3671 6.103997 CCTGTCAAATGCAGCTCAATATTTT 58.896 36.000 0.00 0.00 32.93 1.82
3503 3672 5.186409 ACCTGTCAAATGCAGCTCAATATTT 59.814 36.000 0.00 0.00 32.93 1.40
3504 3673 4.708421 ACCTGTCAAATGCAGCTCAATATT 59.292 37.500 0.00 0.00 32.93 1.28
3505 3674 4.275810 ACCTGTCAAATGCAGCTCAATAT 58.724 39.130 0.00 0.00 32.93 1.28
3506 3675 3.689347 ACCTGTCAAATGCAGCTCAATA 58.311 40.909 0.00 0.00 32.93 1.90
3507 3676 2.490903 GACCTGTCAAATGCAGCTCAAT 59.509 45.455 0.00 0.00 32.93 2.57
3508 3677 1.881973 GACCTGTCAAATGCAGCTCAA 59.118 47.619 0.00 0.00 32.93 3.02
3509 3678 1.527034 GACCTGTCAAATGCAGCTCA 58.473 50.000 0.00 0.00 32.93 4.26
3510 3679 0.807496 GGACCTGTCAAATGCAGCTC 59.193 55.000 0.00 0.00 32.93 4.09
3511 3680 0.403271 AGGACCTGTCAAATGCAGCT 59.597 50.000 0.00 0.00 32.93 4.24
3512 3681 1.251251 AAGGACCTGTCAAATGCAGC 58.749 50.000 0.00 0.00 32.93 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.