Multiple sequence alignment - TraesCS7D01G023400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G023400 | chr7D | 100.000 | 3209 | 0 | 0 | 1 | 3209 | 10964660 | 10961452 | 0.000000e+00 | 5927.0 |
1 | TraesCS7D01G023400 | chr7D | 85.461 | 1410 | 133 | 37 | 1815 | 3202 | 10972505 | 10971146 | 0.000000e+00 | 1402.0 |
2 | TraesCS7D01G023400 | chr7D | 83.723 | 1370 | 177 | 25 | 1092 | 2427 | 10910344 | 10908987 | 0.000000e+00 | 1253.0 |
3 | TraesCS7D01G023400 | chr7D | 90.372 | 779 | 49 | 16 | 2450 | 3209 | 10903402 | 10902631 | 0.000000e+00 | 1000.0 |
4 | TraesCS7D01G023400 | chr7D | 77.159 | 1725 | 271 | 75 | 930 | 2605 | 10151177 | 10149527 | 0.000000e+00 | 889.0 |
5 | TraesCS7D01G023400 | chr7D | 78.723 | 1363 | 222 | 37 | 1095 | 2438 | 10465539 | 10464226 | 0.000000e+00 | 848.0 |
6 | TraesCS7D01G023400 | chr7D | 78.109 | 1407 | 234 | 37 | 1028 | 2412 | 8870162 | 8871516 | 0.000000e+00 | 824.0 |
7 | TraesCS7D01G023400 | chr7D | 73.992 | 769 | 106 | 55 | 2446 | 3194 | 9382242 | 9382936 | 3.220000e-55 | 226.0 |
8 | TraesCS7D01G023400 | chr7A | 91.368 | 2398 | 146 | 35 | 855 | 3200 | 10092196 | 10089808 | 0.000000e+00 | 3225.0 |
9 | TraesCS7D01G023400 | chr7A | 79.540 | 1828 | 242 | 60 | 999 | 2805 | 10157673 | 10155957 | 0.000000e+00 | 1182.0 |
10 | TraesCS7D01G023400 | chr7A | 79.901 | 1612 | 256 | 39 | 1009 | 2604 | 10169953 | 10168394 | 0.000000e+00 | 1120.0 |
11 | TraesCS7D01G023400 | chr7A | 90.283 | 813 | 71 | 6 | 1817 | 2628 | 10168224 | 10167419 | 0.000000e+00 | 1057.0 |
12 | TraesCS7D01G023400 | chr7A | 79.012 | 1620 | 271 | 46 | 1009 | 2605 | 114414390 | 114412817 | 0.000000e+00 | 1044.0 |
13 | TraesCS7D01G023400 | chr7A | 77.059 | 1809 | 316 | 64 | 1009 | 2770 | 114688758 | 114687002 | 0.000000e+00 | 950.0 |
14 | TraesCS7D01G023400 | chr7A | 89.228 | 557 | 46 | 7 | 2666 | 3209 | 10167418 | 10166863 | 0.000000e+00 | 684.0 |
15 | TraesCS7D01G023400 | chr7A | 98.438 | 64 | 1 | 0 | 799 | 862 | 10092277 | 10092214 | 2.620000e-21 | 113.0 |
16 | TraesCS7D01G023400 | chr7B | 79.975 | 1618 | 263 | 39 | 1006 | 2604 | 68223641 | 68222066 | 0.000000e+00 | 1136.0 |
17 | TraesCS7D01G023400 | chr7B | 89.735 | 565 | 54 | 3 | 58 | 621 | 197038887 | 197039448 | 0.000000e+00 | 719.0 |
18 | TraesCS7D01G023400 | chr4B | 81.505 | 1395 | 220 | 24 | 1001 | 2378 | 654201948 | 654203321 | 0.000000e+00 | 1112.0 |
19 | TraesCS7D01G023400 | chr4B | 89.261 | 568 | 50 | 9 | 58 | 621 | 666750282 | 666750842 | 0.000000e+00 | 701.0 |
20 | TraesCS7D01G023400 | chr4D | 80.569 | 1477 | 234 | 32 | 930 | 2378 | 507352313 | 507350862 | 0.000000e+00 | 1088.0 |
21 | TraesCS7D01G023400 | chr4A | 78.110 | 1640 | 274 | 58 | 1003 | 2602 | 728645443 | 728643849 | 0.000000e+00 | 961.0 |
22 | TraesCS7D01G023400 | chr4A | 77.213 | 1830 | 298 | 62 | 999 | 2794 | 729157300 | 729159044 | 0.000000e+00 | 959.0 |
23 | TraesCS7D01G023400 | chr4A | 78.678 | 1543 | 252 | 54 | 1092 | 2603 | 729819319 | 729820815 | 0.000000e+00 | 955.0 |
24 | TraesCS7D01G023400 | chr4A | 77.551 | 1715 | 286 | 49 | 1091 | 2778 | 729880945 | 729882587 | 0.000000e+00 | 942.0 |
25 | TraesCS7D01G023400 | chr4A | 81.066 | 1220 | 192 | 27 | 999 | 2209 | 728353077 | 728351888 | 0.000000e+00 | 937.0 |
26 | TraesCS7D01G023400 | chr4A | 85.141 | 922 | 78 | 25 | 2304 | 3209 | 727412179 | 727413057 | 0.000000e+00 | 889.0 |
27 | TraesCS7D01G023400 | chr4A | 77.649 | 1548 | 264 | 41 | 1057 | 2579 | 730456111 | 730457601 | 0.000000e+00 | 867.0 |
28 | TraesCS7D01G023400 | chr4A | 77.326 | 1548 | 277 | 38 | 1057 | 2579 | 729972612 | 729971114 | 0.000000e+00 | 846.0 |
29 | TraesCS7D01G023400 | chr4A | 79.481 | 1272 | 186 | 51 | 985 | 2222 | 731097636 | 731098866 | 0.000000e+00 | 833.0 |
30 | TraesCS7D01G023400 | chr4A | 78.100 | 1379 | 233 | 43 | 1005 | 2351 | 729827486 | 729828827 | 0.000000e+00 | 809.0 |
31 | TraesCS7D01G023400 | chr4A | 76.538 | 1560 | 274 | 42 | 1057 | 2579 | 730509840 | 730511344 | 0.000000e+00 | 769.0 |
32 | TraesCS7D01G023400 | chr4A | 77.830 | 1069 | 168 | 35 | 1731 | 2778 | 729678548 | 729679568 | 5.930000e-167 | 597.0 |
33 | TraesCS7D01G023400 | chr4A | 88.000 | 250 | 16 | 5 | 2970 | 3209 | 727413222 | 727413467 | 1.880000e-72 | 283.0 |
34 | TraesCS7D01G023400 | chr4A | 86.842 | 114 | 11 | 3 | 3089 | 3200 | 727131553 | 727131664 | 1.210000e-24 | 124.0 |
35 | TraesCS7D01G023400 | chr4A | 96.970 | 33 | 0 | 1 | 624 | 655 | 192738650 | 192738682 | 2.000000e-03 | 54.7 |
36 | TraesCS7D01G023400 | chr3B | 90.813 | 566 | 46 | 5 | 58 | 621 | 557941458 | 557942019 | 0.000000e+00 | 752.0 |
37 | TraesCS7D01G023400 | chr3B | 89.242 | 567 | 51 | 9 | 58 | 621 | 408314482 | 408313923 | 0.000000e+00 | 701.0 |
38 | TraesCS7D01G023400 | chr1D | 89.894 | 564 | 47 | 9 | 58 | 617 | 402717711 | 402718268 | 0.000000e+00 | 717.0 |
39 | TraesCS7D01G023400 | chr2A | 89.613 | 568 | 52 | 4 | 58 | 621 | 141092036 | 141092600 | 0.000000e+00 | 715.0 |
40 | TraesCS7D01G023400 | chr6A | 89.594 | 567 | 50 | 8 | 58 | 621 | 516011520 | 516010960 | 0.000000e+00 | 712.0 |
41 | TraesCS7D01G023400 | chr5B | 89.418 | 567 | 51 | 8 | 58 | 621 | 74020634 | 74021194 | 0.000000e+00 | 706.0 |
42 | TraesCS7D01G023400 | chr5B | 89.418 | 567 | 51 | 8 | 58 | 621 | 74026158 | 74026718 | 0.000000e+00 | 706.0 |
43 | TraesCS7D01G023400 | chr6D | 76.771 | 607 | 84 | 33 | 2218 | 2813 | 84281277 | 84281837 | 1.460000e-73 | 287.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G023400 | chr7D | 10961452 | 10964660 | 3208 | True | 5927.000000 | 5927 | 100.000000 | 1 | 3209 | 1 | chr7D.!!$R5 | 3208 |
1 | TraesCS7D01G023400 | chr7D | 10971146 | 10972505 | 1359 | True | 1402.000000 | 1402 | 85.461000 | 1815 | 3202 | 1 | chr7D.!!$R6 | 1387 |
2 | TraesCS7D01G023400 | chr7D | 10908987 | 10910344 | 1357 | True | 1253.000000 | 1253 | 83.723000 | 1092 | 2427 | 1 | chr7D.!!$R4 | 1335 |
3 | TraesCS7D01G023400 | chr7D | 10902631 | 10903402 | 771 | True | 1000.000000 | 1000 | 90.372000 | 2450 | 3209 | 1 | chr7D.!!$R3 | 759 |
4 | TraesCS7D01G023400 | chr7D | 10149527 | 10151177 | 1650 | True | 889.000000 | 889 | 77.159000 | 930 | 2605 | 1 | chr7D.!!$R1 | 1675 |
5 | TraesCS7D01G023400 | chr7D | 10464226 | 10465539 | 1313 | True | 848.000000 | 848 | 78.723000 | 1095 | 2438 | 1 | chr7D.!!$R2 | 1343 |
6 | TraesCS7D01G023400 | chr7D | 8870162 | 8871516 | 1354 | False | 824.000000 | 824 | 78.109000 | 1028 | 2412 | 1 | chr7D.!!$F1 | 1384 |
7 | TraesCS7D01G023400 | chr7D | 9382242 | 9382936 | 694 | False | 226.000000 | 226 | 73.992000 | 2446 | 3194 | 1 | chr7D.!!$F2 | 748 |
8 | TraesCS7D01G023400 | chr7A | 10089808 | 10092277 | 2469 | True | 1669.000000 | 3225 | 94.903000 | 799 | 3200 | 2 | chr7A.!!$R4 | 2401 |
9 | TraesCS7D01G023400 | chr7A | 10155957 | 10157673 | 1716 | True | 1182.000000 | 1182 | 79.540000 | 999 | 2805 | 1 | chr7A.!!$R1 | 1806 |
10 | TraesCS7D01G023400 | chr7A | 114412817 | 114414390 | 1573 | True | 1044.000000 | 1044 | 79.012000 | 1009 | 2605 | 1 | chr7A.!!$R2 | 1596 |
11 | TraesCS7D01G023400 | chr7A | 10166863 | 10169953 | 3090 | True | 953.666667 | 1120 | 86.470667 | 1009 | 3209 | 3 | chr7A.!!$R5 | 2200 |
12 | TraesCS7D01G023400 | chr7A | 114687002 | 114688758 | 1756 | True | 950.000000 | 950 | 77.059000 | 1009 | 2770 | 1 | chr7A.!!$R3 | 1761 |
13 | TraesCS7D01G023400 | chr7B | 68222066 | 68223641 | 1575 | True | 1136.000000 | 1136 | 79.975000 | 1006 | 2604 | 1 | chr7B.!!$R1 | 1598 |
14 | TraesCS7D01G023400 | chr7B | 197038887 | 197039448 | 561 | False | 719.000000 | 719 | 89.735000 | 58 | 621 | 1 | chr7B.!!$F1 | 563 |
15 | TraesCS7D01G023400 | chr4B | 654201948 | 654203321 | 1373 | False | 1112.000000 | 1112 | 81.505000 | 1001 | 2378 | 1 | chr4B.!!$F1 | 1377 |
16 | TraesCS7D01G023400 | chr4B | 666750282 | 666750842 | 560 | False | 701.000000 | 701 | 89.261000 | 58 | 621 | 1 | chr4B.!!$F2 | 563 |
17 | TraesCS7D01G023400 | chr4D | 507350862 | 507352313 | 1451 | True | 1088.000000 | 1088 | 80.569000 | 930 | 2378 | 1 | chr4D.!!$R1 | 1448 |
18 | TraesCS7D01G023400 | chr4A | 728643849 | 728645443 | 1594 | True | 961.000000 | 961 | 78.110000 | 1003 | 2602 | 1 | chr4A.!!$R2 | 1599 |
19 | TraesCS7D01G023400 | chr4A | 729157300 | 729159044 | 1744 | False | 959.000000 | 959 | 77.213000 | 999 | 2794 | 1 | chr4A.!!$F3 | 1795 |
20 | TraesCS7D01G023400 | chr4A | 729819319 | 729820815 | 1496 | False | 955.000000 | 955 | 78.678000 | 1092 | 2603 | 1 | chr4A.!!$F5 | 1511 |
21 | TraesCS7D01G023400 | chr4A | 729880945 | 729882587 | 1642 | False | 942.000000 | 942 | 77.551000 | 1091 | 2778 | 1 | chr4A.!!$F7 | 1687 |
22 | TraesCS7D01G023400 | chr4A | 728351888 | 728353077 | 1189 | True | 937.000000 | 937 | 81.066000 | 999 | 2209 | 1 | chr4A.!!$R1 | 1210 |
23 | TraesCS7D01G023400 | chr4A | 730456111 | 730457601 | 1490 | False | 867.000000 | 867 | 77.649000 | 1057 | 2579 | 1 | chr4A.!!$F8 | 1522 |
24 | TraesCS7D01G023400 | chr4A | 729971114 | 729972612 | 1498 | True | 846.000000 | 846 | 77.326000 | 1057 | 2579 | 1 | chr4A.!!$R3 | 1522 |
25 | TraesCS7D01G023400 | chr4A | 731097636 | 731098866 | 1230 | False | 833.000000 | 833 | 79.481000 | 985 | 2222 | 1 | chr4A.!!$F10 | 1237 |
26 | TraesCS7D01G023400 | chr4A | 729827486 | 729828827 | 1341 | False | 809.000000 | 809 | 78.100000 | 1005 | 2351 | 1 | chr4A.!!$F6 | 1346 |
27 | TraesCS7D01G023400 | chr4A | 730509840 | 730511344 | 1504 | False | 769.000000 | 769 | 76.538000 | 1057 | 2579 | 1 | chr4A.!!$F9 | 1522 |
28 | TraesCS7D01G023400 | chr4A | 729678548 | 729679568 | 1020 | False | 597.000000 | 597 | 77.830000 | 1731 | 2778 | 1 | chr4A.!!$F4 | 1047 |
29 | TraesCS7D01G023400 | chr4A | 727412179 | 727413467 | 1288 | False | 586.000000 | 889 | 86.570500 | 2304 | 3209 | 2 | chr4A.!!$F11 | 905 |
30 | TraesCS7D01G023400 | chr3B | 557941458 | 557942019 | 561 | False | 752.000000 | 752 | 90.813000 | 58 | 621 | 1 | chr3B.!!$F1 | 563 |
31 | TraesCS7D01G023400 | chr3B | 408313923 | 408314482 | 559 | True | 701.000000 | 701 | 89.242000 | 58 | 621 | 1 | chr3B.!!$R1 | 563 |
32 | TraesCS7D01G023400 | chr1D | 402717711 | 402718268 | 557 | False | 717.000000 | 717 | 89.894000 | 58 | 617 | 1 | chr1D.!!$F1 | 559 |
33 | TraesCS7D01G023400 | chr2A | 141092036 | 141092600 | 564 | False | 715.000000 | 715 | 89.613000 | 58 | 621 | 1 | chr2A.!!$F1 | 563 |
34 | TraesCS7D01G023400 | chr6A | 516010960 | 516011520 | 560 | True | 712.000000 | 712 | 89.594000 | 58 | 621 | 1 | chr6A.!!$R1 | 563 |
35 | TraesCS7D01G023400 | chr5B | 74020634 | 74021194 | 560 | False | 706.000000 | 706 | 89.418000 | 58 | 621 | 1 | chr5B.!!$F1 | 563 |
36 | TraesCS7D01G023400 | chr5B | 74026158 | 74026718 | 560 | False | 706.000000 | 706 | 89.418000 | 58 | 621 | 1 | chr5B.!!$F2 | 563 |
37 | TraesCS7D01G023400 | chr6D | 84281277 | 84281837 | 560 | False | 287.000000 | 287 | 76.771000 | 2218 | 2813 | 1 | chr6D.!!$F1 | 595 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
460 | 471 | 0.105658 | AGGCGGCTAGACTTCCCATA | 60.106 | 55.0 | 11.03 | 0.00 | 30.6 | 2.74 | F |
649 | 660 | 0.108756 | GTGGCTAGGTCTCGGTCAAC | 60.109 | 60.0 | 0.00 | 0.00 | 0.0 | 3.18 | F |
1742 | 1904 | 0.035534 | ATGTACGTGATTGGCAGCCA | 60.036 | 50.0 | 11.22 | 11.22 | 0.0 | 4.75 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1631 | 1772 | 0.111832 | ACACCAGTCTCCTGTCCGTA | 59.888 | 55.0 | 0.00 | 0.0 | 36.95 | 4.02 | R |
1924 | 3037 | 0.250234 | CGATCCTTGAGCCACCAGAA | 59.750 | 55.0 | 0.00 | 0.0 | 0.00 | 3.02 | R |
3024 | 4298 | 0.108186 | TCTGCTGCATTACCCTGACG | 60.108 | 55.0 | 1.31 | 0.0 | 0.00 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 3.626154 | CGACTTCGCTAGGGAGTTC | 57.374 | 57.895 | 9.68 | 9.15 | 0.00 | 3.01 |
35 | 36 | 1.096416 | CGACTTCGCTAGGGAGTTCT | 58.904 | 55.000 | 9.68 | 0.00 | 0.00 | 3.01 |
36 | 37 | 1.473278 | CGACTTCGCTAGGGAGTTCTT | 59.527 | 52.381 | 9.68 | 0.00 | 0.00 | 2.52 |
37 | 38 | 2.732597 | CGACTTCGCTAGGGAGTTCTTG | 60.733 | 54.545 | 9.68 | 1.18 | 0.00 | 3.02 |
38 | 39 | 2.492484 | GACTTCGCTAGGGAGTTCTTGA | 59.508 | 50.000 | 9.68 | 0.00 | 0.00 | 3.02 |
39 | 40 | 2.231721 | ACTTCGCTAGGGAGTTCTTGAC | 59.768 | 50.000 | 9.68 | 0.00 | 0.00 | 3.18 |
40 | 41 | 1.183549 | TCGCTAGGGAGTTCTTGACC | 58.816 | 55.000 | 5.20 | 0.00 | 0.00 | 4.02 |
41 | 42 | 0.179134 | CGCTAGGGAGTTCTTGACCG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
42 | 43 | 0.460459 | GCTAGGGAGTTCTTGACCGC | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
43 | 44 | 0.175989 | CTAGGGAGTTCTTGACCGCC | 59.824 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
44 | 45 | 0.543410 | TAGGGAGTTCTTGACCGCCA | 60.543 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
45 | 46 | 1.072505 | GGGAGTTCTTGACCGCCAA | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
46 | 47 | 0.536460 | GGGAGTTCTTGACCGCCAAA | 60.536 | 55.000 | 0.00 | 0.00 | 33.76 | 3.28 |
47 | 48 | 1.314730 | GGAGTTCTTGACCGCCAAAA | 58.685 | 50.000 | 0.00 | 0.00 | 33.76 | 2.44 |
48 | 49 | 1.679153 | GGAGTTCTTGACCGCCAAAAA | 59.321 | 47.619 | 0.00 | 0.00 | 33.76 | 1.94 |
68 | 69 | 4.864334 | GATGCACCCCAGCGGAGG | 62.864 | 72.222 | 0.00 | 0.00 | 37.31 | 4.30 |
127 | 128 | 3.072468 | CCTCCAACGCCGAGGGTA | 61.072 | 66.667 | 0.00 | 0.00 | 42.85 | 3.69 |
144 | 145 | 1.446907 | GTAATGCACTGCAGCTCACT | 58.553 | 50.000 | 15.27 | 4.20 | 43.65 | 3.41 |
205 | 207 | 2.690778 | GCGGGCGCTTTTGATGACT | 61.691 | 57.895 | 7.64 | 0.00 | 38.26 | 3.41 |
214 | 216 | 2.412847 | GCTTTTGATGACTCGAAACCCG | 60.413 | 50.000 | 0.00 | 0.00 | 40.25 | 5.28 |
224 | 226 | 1.068417 | CGAAACCCGATATGCCCGA | 59.932 | 57.895 | 0.00 | 0.00 | 41.76 | 5.14 |
243 | 245 | 1.997874 | GAGGGACCACATCAGGGCT | 60.998 | 63.158 | 0.00 | 0.00 | 36.69 | 5.19 |
245 | 247 | 2.300967 | GGGACCACATCAGGGCTCA | 61.301 | 63.158 | 0.00 | 0.00 | 37.02 | 4.26 |
301 | 303 | 1.381327 | CCTAGGGCCTCGAGGTTCA | 60.381 | 63.158 | 31.43 | 14.05 | 37.57 | 3.18 |
345 | 347 | 2.726832 | ACGAAGAACGAGGAAGAAGG | 57.273 | 50.000 | 0.00 | 0.00 | 45.77 | 3.46 |
347 | 349 | 2.626743 | ACGAAGAACGAGGAAGAAGGAA | 59.373 | 45.455 | 0.00 | 0.00 | 45.77 | 3.36 |
360 | 366 | 4.893524 | GGAAGAAGGAAAACAAGGGAGAAA | 59.106 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
449 | 460 | 3.767673 | CCTTGGTATATAAGAGGCGGCTA | 59.232 | 47.826 | 13.24 | 0.00 | 0.00 | 3.93 |
460 | 471 | 0.105658 | AGGCGGCTAGACTTCCCATA | 60.106 | 55.000 | 11.03 | 0.00 | 30.60 | 2.74 |
465 | 476 | 2.693591 | CGGCTAGACTTCCCATACAAGA | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
547 | 558 | 8.989653 | ACTTTCCAAAACTGTTCGATTTAAAA | 57.010 | 26.923 | 0.00 | 0.00 | 0.00 | 1.52 |
548 | 559 | 9.425577 | ACTTTCCAAAACTGTTCGATTTAAAAA | 57.574 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
565 | 576 | 7.519032 | TTTAAAAACTAGCTGCACCTTGTAT | 57.481 | 32.000 | 1.02 | 0.00 | 0.00 | 2.29 |
568 | 579 | 3.703001 | ACTAGCTGCACCTTGTATGTT | 57.297 | 42.857 | 1.02 | 0.00 | 0.00 | 2.71 |
621 | 632 | 1.541588 | ACGAGCCCAAAAGCAATCTTC | 59.458 | 47.619 | 0.00 | 0.00 | 34.23 | 2.87 |
622 | 633 | 1.815003 | CGAGCCCAAAAGCAATCTTCT | 59.185 | 47.619 | 0.00 | 0.00 | 34.23 | 2.85 |
623 | 634 | 3.009723 | CGAGCCCAAAAGCAATCTTCTA | 58.990 | 45.455 | 0.00 | 0.00 | 34.23 | 2.10 |
624 | 635 | 3.629398 | CGAGCCCAAAAGCAATCTTCTAT | 59.371 | 43.478 | 0.00 | 0.00 | 34.23 | 1.98 |
625 | 636 | 4.816385 | CGAGCCCAAAAGCAATCTTCTATA | 59.184 | 41.667 | 0.00 | 0.00 | 34.23 | 1.31 |
626 | 637 | 5.049818 | CGAGCCCAAAAGCAATCTTCTATAG | 60.050 | 44.000 | 0.00 | 0.00 | 34.23 | 1.31 |
627 | 638 | 5.136105 | AGCCCAAAAGCAATCTTCTATAGG | 58.864 | 41.667 | 0.00 | 0.00 | 34.23 | 2.57 |
628 | 639 | 5.103940 | AGCCCAAAAGCAATCTTCTATAGGA | 60.104 | 40.000 | 0.00 | 0.00 | 34.23 | 2.94 |
629 | 640 | 5.772169 | GCCCAAAAGCAATCTTCTATAGGAT | 59.228 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
630 | 641 | 6.294397 | GCCCAAAAGCAATCTTCTATAGGATG | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
631 | 642 | 6.774656 | CCCAAAAGCAATCTTCTATAGGATGT | 59.225 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
632 | 643 | 7.255381 | CCCAAAAGCAATCTTCTATAGGATGTG | 60.255 | 40.741 | 0.00 | 0.10 | 0.00 | 3.21 |
633 | 644 | 7.255381 | CCAAAAGCAATCTTCTATAGGATGTGG | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 4.17 |
634 | 645 | 4.904241 | AGCAATCTTCTATAGGATGTGGC | 58.096 | 43.478 | 0.00 | 2.20 | 0.00 | 5.01 |
635 | 646 | 4.596643 | AGCAATCTTCTATAGGATGTGGCT | 59.403 | 41.667 | 0.00 | 4.19 | 0.00 | 4.75 |
636 | 647 | 5.782331 | AGCAATCTTCTATAGGATGTGGCTA | 59.218 | 40.000 | 0.00 | 0.00 | 0.00 | 3.93 |
637 | 648 | 6.070881 | AGCAATCTTCTATAGGATGTGGCTAG | 60.071 | 42.308 | 0.00 | 0.00 | 0.00 | 3.42 |
638 | 649 | 6.638610 | CAATCTTCTATAGGATGTGGCTAGG | 58.361 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
639 | 650 | 5.340891 | TCTTCTATAGGATGTGGCTAGGT | 57.659 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
640 | 651 | 5.326069 | TCTTCTATAGGATGTGGCTAGGTC | 58.674 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
641 | 652 | 5.075205 | TCTTCTATAGGATGTGGCTAGGTCT | 59.925 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
642 | 653 | 4.924625 | TCTATAGGATGTGGCTAGGTCTC | 58.075 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
643 | 654 | 1.982660 | TAGGATGTGGCTAGGTCTCG | 58.017 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
644 | 655 | 0.757188 | AGGATGTGGCTAGGTCTCGG | 60.757 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
645 | 656 | 1.043673 | GGATGTGGCTAGGTCTCGGT | 61.044 | 60.000 | 0.00 | 0.00 | 0.00 | 4.69 |
646 | 657 | 0.386113 | GATGTGGCTAGGTCTCGGTC | 59.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
647 | 658 | 0.324368 | ATGTGGCTAGGTCTCGGTCA | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
648 | 659 | 0.541063 | TGTGGCTAGGTCTCGGTCAA | 60.541 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
649 | 660 | 0.108756 | GTGGCTAGGTCTCGGTCAAC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
650 | 661 | 0.251653 | TGGCTAGGTCTCGGTCAACT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
651 | 662 | 1.005097 | TGGCTAGGTCTCGGTCAACTA | 59.995 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
652 | 663 | 2.097825 | GGCTAGGTCTCGGTCAACTAA | 58.902 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
653 | 664 | 2.099427 | GGCTAGGTCTCGGTCAACTAAG | 59.901 | 54.545 | 0.00 | 0.00 | 0.00 | 2.18 |
654 | 665 | 3.015327 | GCTAGGTCTCGGTCAACTAAGA | 58.985 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
655 | 666 | 3.633065 | GCTAGGTCTCGGTCAACTAAGAT | 59.367 | 47.826 | 0.00 | 0.00 | 0.00 | 2.40 |
656 | 667 | 4.098196 | GCTAGGTCTCGGTCAACTAAGATT | 59.902 | 45.833 | 0.00 | 0.00 | 0.00 | 2.40 |
657 | 668 | 5.298777 | GCTAGGTCTCGGTCAACTAAGATTA | 59.701 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
658 | 669 | 6.183360 | GCTAGGTCTCGGTCAACTAAGATTAA | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
659 | 670 | 5.963594 | AGGTCTCGGTCAACTAAGATTAAC | 58.036 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
660 | 671 | 5.105432 | AGGTCTCGGTCAACTAAGATTAACC | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
661 | 672 | 5.337009 | GGTCTCGGTCAACTAAGATTAACCA | 60.337 | 44.000 | 0.00 | 0.00 | 0.00 | 3.67 |
662 | 673 | 6.161381 | GTCTCGGTCAACTAAGATTAACCAA | 58.839 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
663 | 674 | 6.310711 | GTCTCGGTCAACTAAGATTAACCAAG | 59.689 | 42.308 | 0.00 | 0.00 | 0.00 | 3.61 |
664 | 675 | 6.209986 | TCTCGGTCAACTAAGATTAACCAAGA | 59.790 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
665 | 676 | 6.161381 | TCGGTCAACTAAGATTAACCAAGAC | 58.839 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
666 | 677 | 6.014840 | TCGGTCAACTAAGATTAACCAAGACT | 60.015 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
667 | 678 | 6.310711 | CGGTCAACTAAGATTAACCAAGACTC | 59.689 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
668 | 679 | 7.159372 | GGTCAACTAAGATTAACCAAGACTCA | 58.841 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
669 | 680 | 7.332182 | GGTCAACTAAGATTAACCAAGACTCAG | 59.668 | 40.741 | 0.00 | 0.00 | 0.00 | 3.35 |
670 | 681 | 7.873505 | GTCAACTAAGATTAACCAAGACTCAGT | 59.126 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
671 | 682 | 8.088981 | TCAACTAAGATTAACCAAGACTCAGTC | 58.911 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
672 | 683 | 7.540474 | ACTAAGATTAACCAAGACTCAGTCA | 57.460 | 36.000 | 7.77 | 0.00 | 34.60 | 3.41 |
673 | 684 | 7.963532 | ACTAAGATTAACCAAGACTCAGTCAA | 58.036 | 34.615 | 7.77 | 0.00 | 34.60 | 3.18 |
674 | 685 | 8.091449 | ACTAAGATTAACCAAGACTCAGTCAAG | 58.909 | 37.037 | 7.77 | 0.00 | 34.60 | 3.02 |
675 | 686 | 6.426646 | AGATTAACCAAGACTCAGTCAAGT | 57.573 | 37.500 | 7.77 | 0.00 | 34.60 | 3.16 |
676 | 687 | 6.831976 | AGATTAACCAAGACTCAGTCAAGTT | 58.168 | 36.000 | 7.77 | 9.64 | 34.60 | 2.66 |
677 | 688 | 7.963532 | AGATTAACCAAGACTCAGTCAAGTTA | 58.036 | 34.615 | 7.77 | 8.67 | 34.60 | 2.24 |
678 | 689 | 8.598041 | AGATTAACCAAGACTCAGTCAAGTTAT | 58.402 | 33.333 | 7.77 | 2.92 | 34.60 | 1.89 |
679 | 690 | 9.871238 | GATTAACCAAGACTCAGTCAAGTTATA | 57.129 | 33.333 | 7.77 | 4.05 | 34.60 | 0.98 |
733 | 744 | 9.945904 | AAAGGAAAAACCAAAAATAACTACACA | 57.054 | 25.926 | 0.00 | 0.00 | 42.04 | 3.72 |
734 | 745 | 9.945904 | AAGGAAAAACCAAAAATAACTACACAA | 57.054 | 25.926 | 0.00 | 0.00 | 42.04 | 3.33 |
735 | 746 | 9.594478 | AGGAAAAACCAAAAATAACTACACAAG | 57.406 | 29.630 | 0.00 | 0.00 | 42.04 | 3.16 |
736 | 747 | 9.373603 | GGAAAAACCAAAAATAACTACACAAGT | 57.626 | 29.630 | 0.00 | 0.00 | 38.24 | 3.16 |
740 | 751 | 8.936070 | AACCAAAAATAACTACACAAGTTTCC | 57.064 | 30.769 | 0.00 | 0.00 | 46.61 | 3.13 |
741 | 752 | 8.068892 | ACCAAAAATAACTACACAAGTTTCCA | 57.931 | 30.769 | 0.00 | 0.00 | 46.61 | 3.53 |
742 | 753 | 7.977293 | ACCAAAAATAACTACACAAGTTTCCAC | 59.023 | 33.333 | 0.00 | 0.00 | 46.61 | 4.02 |
743 | 754 | 7.166804 | CCAAAAATAACTACACAAGTTTCCACG | 59.833 | 37.037 | 0.00 | 0.00 | 46.61 | 4.94 |
744 | 755 | 6.930667 | AAATAACTACACAAGTTTCCACGT | 57.069 | 33.333 | 0.00 | 0.00 | 46.61 | 4.49 |
745 | 756 | 8.436046 | AAAATAACTACACAAGTTTCCACGTA | 57.564 | 30.769 | 0.00 | 0.00 | 46.61 | 3.57 |
746 | 757 | 8.436046 | AAATAACTACACAAGTTTCCACGTAA | 57.564 | 30.769 | 0.00 | 0.00 | 46.61 | 3.18 |
747 | 758 | 5.978934 | AACTACACAAGTTTCCACGTAAG | 57.021 | 39.130 | 0.00 | 0.00 | 46.61 | 2.34 |
748 | 759 | 5.266733 | ACTACACAAGTTTCCACGTAAGA | 57.733 | 39.130 | 0.00 | 0.00 | 36.13 | 2.10 |
749 | 760 | 5.850614 | ACTACACAAGTTTCCACGTAAGAT | 58.149 | 37.500 | 0.00 | 0.00 | 36.13 | 2.40 |
750 | 761 | 5.924825 | ACTACACAAGTTTCCACGTAAGATC | 59.075 | 40.000 | 0.00 | 0.00 | 36.13 | 2.75 |
751 | 762 | 3.739300 | ACACAAGTTTCCACGTAAGATCG | 59.261 | 43.478 | 0.00 | 0.00 | 43.62 | 3.69 |
752 | 763 | 3.985279 | CACAAGTTTCCACGTAAGATCGA | 59.015 | 43.478 | 0.00 | 0.00 | 43.62 | 3.59 |
753 | 764 | 4.625742 | CACAAGTTTCCACGTAAGATCGAT | 59.374 | 41.667 | 0.00 | 0.00 | 43.62 | 3.59 |
754 | 765 | 4.863131 | ACAAGTTTCCACGTAAGATCGATC | 59.137 | 41.667 | 17.91 | 17.91 | 43.62 | 3.69 |
755 | 766 | 3.692576 | AGTTTCCACGTAAGATCGATCG | 58.307 | 45.455 | 19.33 | 9.36 | 43.62 | 3.69 |
756 | 767 | 2.768833 | TTCCACGTAAGATCGATCGG | 57.231 | 50.000 | 19.33 | 13.22 | 43.62 | 4.18 |
757 | 768 | 1.957668 | TCCACGTAAGATCGATCGGA | 58.042 | 50.000 | 19.33 | 15.24 | 43.62 | 4.55 |
758 | 769 | 1.600957 | TCCACGTAAGATCGATCGGAC | 59.399 | 52.381 | 19.33 | 18.45 | 43.62 | 4.79 |
759 | 770 | 1.602851 | CCACGTAAGATCGATCGGACT | 59.397 | 52.381 | 19.33 | 11.86 | 43.62 | 3.85 |
760 | 771 | 2.602456 | CCACGTAAGATCGATCGGACTG | 60.602 | 54.545 | 19.33 | 17.32 | 43.62 | 3.51 |
761 | 772 | 1.602851 | ACGTAAGATCGATCGGACTGG | 59.397 | 52.381 | 19.33 | 11.47 | 43.62 | 4.00 |
762 | 773 | 1.602851 | CGTAAGATCGATCGGACTGGT | 59.397 | 52.381 | 19.33 | 3.95 | 43.02 | 4.00 |
763 | 774 | 2.804527 | CGTAAGATCGATCGGACTGGTA | 59.195 | 50.000 | 19.33 | 3.04 | 43.02 | 3.25 |
764 | 775 | 3.436015 | CGTAAGATCGATCGGACTGGTAT | 59.564 | 47.826 | 19.33 | 0.00 | 43.02 | 2.73 |
765 | 776 | 4.083431 | CGTAAGATCGATCGGACTGGTATT | 60.083 | 45.833 | 19.33 | 7.73 | 43.02 | 1.89 |
766 | 777 | 4.939052 | AAGATCGATCGGACTGGTATTT | 57.061 | 40.909 | 19.33 | 1.81 | 0.00 | 1.40 |
767 | 778 | 6.347969 | CGTAAGATCGATCGGACTGGTATTTA | 60.348 | 42.308 | 19.33 | 6.11 | 43.02 | 1.40 |
768 | 779 | 6.401047 | AAGATCGATCGGACTGGTATTTAA | 57.599 | 37.500 | 19.33 | 0.00 | 0.00 | 1.52 |
769 | 780 | 5.770417 | AGATCGATCGGACTGGTATTTAAC | 58.230 | 41.667 | 19.33 | 0.00 | 0.00 | 2.01 |
770 | 781 | 4.987408 | TCGATCGGACTGGTATTTAACA | 57.013 | 40.909 | 16.41 | 0.00 | 0.00 | 2.41 |
771 | 782 | 5.327616 | TCGATCGGACTGGTATTTAACAA | 57.672 | 39.130 | 16.41 | 0.00 | 0.00 | 2.83 |
772 | 783 | 5.345702 | TCGATCGGACTGGTATTTAACAAG | 58.654 | 41.667 | 16.41 | 0.00 | 34.98 | 3.16 |
773 | 784 | 5.105635 | TCGATCGGACTGGTATTTAACAAGT | 60.106 | 40.000 | 16.41 | 0.00 | 45.67 | 3.16 |
783 | 794 | 9.574516 | ACTGGTATTTAACAAGTCTCAAATCTT | 57.425 | 29.630 | 0.00 | 0.00 | 37.95 | 2.40 |
796 | 807 | 5.944013 | TCTCAAATCTTAGACTGAGACGTG | 58.056 | 41.667 | 17.08 | 1.44 | 39.43 | 4.49 |
797 | 808 | 5.060662 | TCAAATCTTAGACTGAGACGTGG | 57.939 | 43.478 | 0.00 | 0.00 | 0.00 | 4.94 |
834 | 845 | 0.172803 | ATCGTACCCTCGTTGACTGC | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
888 | 925 | 2.444700 | AAACCAGGTACGCTCCACCG | 62.445 | 60.000 | 0.00 | 0.00 | 41.21 | 4.94 |
922 | 959 | 1.065928 | CGACGATTTCCTCTCCCCG | 59.934 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
924 | 961 | 0.535797 | GACGATTTCCTCTCCCCGTT | 59.464 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
976 | 1027 | 2.365635 | GGCCTGACCTCCAGCCTA | 60.366 | 66.667 | 0.00 | 0.00 | 41.57 | 3.93 |
996 | 1051 | 0.390866 | CGCAGCACTCCAGATTCAGT | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
997 | 1052 | 1.085091 | GCAGCACTCCAGATTCAGTG | 58.915 | 55.000 | 0.00 | 0.00 | 42.61 | 3.66 |
1334 | 1443 | 2.187946 | CCTCCCTTACCTGCAGCG | 59.812 | 66.667 | 8.66 | 4.27 | 0.00 | 5.18 |
1339 | 1448 | 3.490759 | CTTACCTGCAGCGTGGCG | 61.491 | 66.667 | 8.66 | 0.00 | 36.28 | 5.69 |
1388 | 1500 | 2.158842 | CCTGTAATGGCCTCCTTCTCTG | 60.159 | 54.545 | 3.32 | 0.00 | 0.00 | 3.35 |
1416 | 1537 | 0.750182 | ACAACAACAAGGTGACCCCG | 60.750 | 55.000 | 0.00 | 0.00 | 36.95 | 5.73 |
1417 | 1538 | 1.826487 | AACAACAAGGTGACCCCGC | 60.826 | 57.895 | 0.00 | 0.00 | 38.74 | 6.13 |
1503 | 1636 | 1.294659 | CTCAGCCTCAAACGCAGGAC | 61.295 | 60.000 | 0.00 | 0.00 | 31.91 | 3.85 |
1600 | 1741 | 1.662438 | CGAGCAGACCTCTCCAGGAC | 61.662 | 65.000 | 0.00 | 0.00 | 43.65 | 3.85 |
1601 | 1742 | 0.324275 | GAGCAGACCTCTCCAGGACT | 60.324 | 60.000 | 0.00 | 0.00 | 44.75 | 3.85 |
1631 | 1772 | 3.827302 | ACAGGAGTGAACATCTACTCGTT | 59.173 | 43.478 | 0.00 | 0.00 | 43.24 | 3.85 |
1742 | 1904 | 0.035534 | ATGTACGTGATTGGCAGCCA | 60.036 | 50.000 | 11.22 | 11.22 | 0.00 | 4.75 |
1743 | 1905 | 0.673333 | TGTACGTGATTGGCAGCCAG | 60.673 | 55.000 | 15.50 | 5.03 | 33.81 | 4.85 |
1907 | 3020 | 4.460731 | TGCCGATGATAACAACAAAATCCA | 59.539 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1924 | 3037 | 1.902508 | TCCAGTTTTCCGAGAGAGCAT | 59.097 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
2771 | 4035 | 4.946784 | AACCACAGAGAAATCGCATAAC | 57.053 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
3024 | 4298 | 3.188667 | GTGCACTCTTAACTTAACAGCCC | 59.811 | 47.826 | 10.32 | 0.00 | 0.00 | 5.19 |
3025 | 4299 | 2.415512 | GCACTCTTAACTTAACAGCCCG | 59.584 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3026 | 4300 | 3.660865 | CACTCTTAACTTAACAGCCCGT | 58.339 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
3027 | 4301 | 3.678548 | CACTCTTAACTTAACAGCCCGTC | 59.321 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
3041 | 4324 | 1.078497 | CCGTCAGGGTAATGCAGCA | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
3043 | 4326 | 0.108186 | CGTCAGGGTAATGCAGCAGA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3046 | 4329 | 2.615912 | GTCAGGGTAATGCAGCAGAATC | 59.384 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3075 | 4358 | 1.000233 | GCTGTACGCGTCGAAACTGA | 61.000 | 55.000 | 18.63 | 0.00 | 0.00 | 3.41 |
3076 | 4359 | 0.701303 | CTGTACGCGTCGAAACTGAC | 59.299 | 55.000 | 18.63 | 6.25 | 35.49 | 3.51 |
3079 | 4362 | 2.784957 | TACGCGTCGAAACTGACCCG | 62.785 | 60.000 | 18.63 | 0.00 | 43.72 | 5.28 |
3080 | 4363 | 2.355481 | GCGTCGAAACTGACCCGT | 60.355 | 61.111 | 0.00 | 0.00 | 35.40 | 5.28 |
3203 | 4914 | 6.959639 | AACCTGCAAGTTTGAGAATCTTAA | 57.040 | 33.333 | 0.00 | 0.00 | 34.92 | 1.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
16 | 17 | 1.096416 | AGAACTCCCTAGCGAAGTCG | 58.904 | 55.000 | 0.00 | 0.00 | 43.27 | 4.18 |
17 | 18 | 2.492484 | TCAAGAACTCCCTAGCGAAGTC | 59.508 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
18 | 19 | 2.231721 | GTCAAGAACTCCCTAGCGAAGT | 59.768 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
19 | 20 | 2.417515 | GGTCAAGAACTCCCTAGCGAAG | 60.418 | 54.545 | 0.00 | 0.00 | 0.00 | 3.79 |
20 | 21 | 1.549170 | GGTCAAGAACTCCCTAGCGAA | 59.451 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
21 | 22 | 1.183549 | GGTCAAGAACTCCCTAGCGA | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
22 | 23 | 0.179134 | CGGTCAAGAACTCCCTAGCG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
23 | 24 | 0.460459 | GCGGTCAAGAACTCCCTAGC | 60.460 | 60.000 | 0.00 | 0.00 | 0.00 | 3.42 |
24 | 25 | 0.175989 | GGCGGTCAAGAACTCCCTAG | 59.824 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
25 | 26 | 0.543410 | TGGCGGTCAAGAACTCCCTA | 60.543 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
26 | 27 | 1.415672 | TTGGCGGTCAAGAACTCCCT | 61.416 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
27 | 28 | 0.536460 | TTTGGCGGTCAAGAACTCCC | 60.536 | 55.000 | 0.00 | 0.00 | 36.62 | 4.30 |
28 | 29 | 1.314730 | TTTTGGCGGTCAAGAACTCC | 58.685 | 50.000 | 0.00 | 0.00 | 36.62 | 3.85 |
45 | 46 | 0.247185 | CGCTGGGGTGCATCATTTTT | 59.753 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
46 | 47 | 1.606885 | CCGCTGGGGTGCATCATTTT | 61.607 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
47 | 48 | 2.053865 | CCGCTGGGGTGCATCATTT | 61.054 | 57.895 | 0.00 | 0.00 | 0.00 | 2.32 |
48 | 49 | 2.440796 | CCGCTGGGGTGCATCATT | 60.441 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
49 | 50 | 3.410628 | TCCGCTGGGGTGCATCAT | 61.411 | 61.111 | 10.81 | 0.00 | 37.00 | 2.45 |
50 | 51 | 4.100084 | CTCCGCTGGGGTGCATCA | 62.100 | 66.667 | 10.81 | 0.00 | 37.00 | 3.07 |
51 | 52 | 4.864334 | CCTCCGCTGGGGTGCATC | 62.864 | 72.222 | 10.81 | 0.00 | 37.00 | 3.91 |
127 | 128 | 0.879765 | GAAGTGAGCTGCAGTGCATT | 59.120 | 50.000 | 20.10 | 8.82 | 38.13 | 3.56 |
144 | 145 | 2.338015 | CGGACGGGTCTCCTTCGAA | 61.338 | 63.158 | 0.00 | 0.00 | 32.58 | 3.71 |
224 | 226 | 1.997874 | GCCCTGATGTGGTCCCTCT | 60.998 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
233 | 235 | 4.457496 | CGCCGTGAGCCCTGATGT | 62.457 | 66.667 | 0.00 | 0.00 | 38.78 | 3.06 |
282 | 284 | 1.076192 | GAACCTCGAGGCCCTAGGA | 60.076 | 63.158 | 31.56 | 2.91 | 39.32 | 2.94 |
301 | 303 | 1.906574 | TCTTCTTCATTACAGGGCGGT | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
449 | 460 | 4.767409 | GCCTTTTTCTTGTATGGGAAGTCT | 59.233 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
460 | 471 | 5.070847 | ACATGAATCCAAGCCTTTTTCTTGT | 59.929 | 36.000 | 0.00 | 7.00 | 39.30 | 3.16 |
465 | 476 | 3.903090 | TGGACATGAATCCAAGCCTTTTT | 59.097 | 39.130 | 0.00 | 0.00 | 46.08 | 1.94 |
547 | 558 | 3.703001 | ACATACAAGGTGCAGCTAGTT | 57.297 | 42.857 | 20.51 | 8.88 | 0.00 | 2.24 |
548 | 559 | 3.703001 | AACATACAAGGTGCAGCTAGT | 57.297 | 42.857 | 20.51 | 10.09 | 0.00 | 2.57 |
621 | 632 | 3.692101 | CGAGACCTAGCCACATCCTATAG | 59.308 | 52.174 | 0.00 | 0.00 | 0.00 | 1.31 |
622 | 633 | 3.561528 | CCGAGACCTAGCCACATCCTATA | 60.562 | 52.174 | 0.00 | 0.00 | 0.00 | 1.31 |
623 | 634 | 2.520069 | CGAGACCTAGCCACATCCTAT | 58.480 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
624 | 635 | 1.478837 | CCGAGACCTAGCCACATCCTA | 60.479 | 57.143 | 0.00 | 0.00 | 0.00 | 2.94 |
625 | 636 | 0.757188 | CCGAGACCTAGCCACATCCT | 60.757 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
626 | 637 | 1.043673 | ACCGAGACCTAGCCACATCC | 61.044 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
627 | 638 | 0.386113 | GACCGAGACCTAGCCACATC | 59.614 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
628 | 639 | 0.324368 | TGACCGAGACCTAGCCACAT | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
629 | 640 | 0.541063 | TTGACCGAGACCTAGCCACA | 60.541 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
630 | 641 | 0.108756 | GTTGACCGAGACCTAGCCAC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
631 | 642 | 0.251653 | AGTTGACCGAGACCTAGCCA | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
632 | 643 | 1.760192 | TAGTTGACCGAGACCTAGCC | 58.240 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
633 | 644 | 3.015327 | TCTTAGTTGACCGAGACCTAGC | 58.985 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
634 | 645 | 5.838531 | AATCTTAGTTGACCGAGACCTAG | 57.161 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
635 | 646 | 6.096001 | GGTTAATCTTAGTTGACCGAGACCTA | 59.904 | 42.308 | 0.00 | 0.00 | 29.59 | 3.08 |
636 | 647 | 5.105432 | GGTTAATCTTAGTTGACCGAGACCT | 60.105 | 44.000 | 0.00 | 0.00 | 29.59 | 3.85 |
637 | 648 | 5.107824 | GGTTAATCTTAGTTGACCGAGACC | 58.892 | 45.833 | 0.00 | 0.00 | 29.59 | 3.85 |
638 | 649 | 5.717119 | TGGTTAATCTTAGTTGACCGAGAC | 58.283 | 41.667 | 0.00 | 0.00 | 39.79 | 3.36 |
639 | 650 | 5.988310 | TGGTTAATCTTAGTTGACCGAGA | 57.012 | 39.130 | 0.00 | 0.00 | 39.79 | 4.04 |
640 | 651 | 6.310711 | GTCTTGGTTAATCTTAGTTGACCGAG | 59.689 | 42.308 | 13.99 | 13.99 | 44.62 | 4.63 |
641 | 652 | 6.014840 | AGTCTTGGTTAATCTTAGTTGACCGA | 60.015 | 38.462 | 0.00 | 0.00 | 39.79 | 4.69 |
642 | 653 | 6.164176 | AGTCTTGGTTAATCTTAGTTGACCG | 58.836 | 40.000 | 0.00 | 0.00 | 39.79 | 4.79 |
643 | 654 | 7.159372 | TGAGTCTTGGTTAATCTTAGTTGACC | 58.841 | 38.462 | 0.00 | 0.00 | 38.02 | 4.02 |
644 | 655 | 7.873505 | ACTGAGTCTTGGTTAATCTTAGTTGAC | 59.126 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
645 | 656 | 7.963532 | ACTGAGTCTTGGTTAATCTTAGTTGA | 58.036 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
646 | 657 | 7.872993 | TGACTGAGTCTTGGTTAATCTTAGTTG | 59.127 | 37.037 | 14.42 | 0.00 | 33.15 | 3.16 |
647 | 658 | 7.963532 | TGACTGAGTCTTGGTTAATCTTAGTT | 58.036 | 34.615 | 14.42 | 0.00 | 33.15 | 2.24 |
648 | 659 | 7.540474 | TGACTGAGTCTTGGTTAATCTTAGT | 57.460 | 36.000 | 14.42 | 0.00 | 33.15 | 2.24 |
649 | 660 | 8.091449 | ACTTGACTGAGTCTTGGTTAATCTTAG | 58.909 | 37.037 | 14.42 | 0.00 | 33.15 | 2.18 |
650 | 661 | 7.963532 | ACTTGACTGAGTCTTGGTTAATCTTA | 58.036 | 34.615 | 14.42 | 0.00 | 33.15 | 2.10 |
651 | 662 | 6.831976 | ACTTGACTGAGTCTTGGTTAATCTT | 58.168 | 36.000 | 14.42 | 0.00 | 33.15 | 2.40 |
652 | 663 | 6.426646 | ACTTGACTGAGTCTTGGTTAATCT | 57.573 | 37.500 | 14.42 | 0.00 | 33.15 | 2.40 |
653 | 664 | 8.779354 | ATAACTTGACTGAGTCTTGGTTAATC | 57.221 | 34.615 | 14.42 | 0.00 | 31.74 | 1.75 |
707 | 718 | 9.945904 | TGTGTAGTTATTTTTGGTTTTTCCTTT | 57.054 | 25.926 | 0.00 | 0.00 | 37.07 | 3.11 |
708 | 719 | 9.945904 | TTGTGTAGTTATTTTTGGTTTTTCCTT | 57.054 | 25.926 | 0.00 | 0.00 | 37.07 | 3.36 |
709 | 720 | 9.594478 | CTTGTGTAGTTATTTTTGGTTTTTCCT | 57.406 | 29.630 | 0.00 | 0.00 | 37.07 | 3.36 |
710 | 721 | 9.373603 | ACTTGTGTAGTTATTTTTGGTTTTTCC | 57.626 | 29.630 | 0.00 | 0.00 | 31.29 | 3.13 |
714 | 725 | 9.373603 | GGAAACTTGTGTAGTTATTTTTGGTTT | 57.626 | 29.630 | 0.00 | 0.00 | 46.34 | 3.27 |
715 | 726 | 8.532819 | TGGAAACTTGTGTAGTTATTTTTGGTT | 58.467 | 29.630 | 0.00 | 0.00 | 46.34 | 3.67 |
716 | 727 | 7.977293 | GTGGAAACTTGTGTAGTTATTTTTGGT | 59.023 | 33.333 | 0.00 | 0.00 | 46.34 | 3.67 |
717 | 728 | 7.166804 | CGTGGAAACTTGTGTAGTTATTTTTGG | 59.833 | 37.037 | 0.00 | 0.00 | 46.34 | 3.28 |
718 | 729 | 7.698970 | ACGTGGAAACTTGTGTAGTTATTTTTG | 59.301 | 33.333 | 0.00 | 0.00 | 46.34 | 2.44 |
719 | 730 | 7.764331 | ACGTGGAAACTTGTGTAGTTATTTTT | 58.236 | 30.769 | 0.00 | 0.00 | 46.34 | 1.94 |
720 | 731 | 7.324354 | ACGTGGAAACTTGTGTAGTTATTTT | 57.676 | 32.000 | 0.00 | 0.00 | 46.34 | 1.82 |
721 | 732 | 6.930667 | ACGTGGAAACTTGTGTAGTTATTT | 57.069 | 33.333 | 0.00 | 0.00 | 46.34 | 1.40 |
722 | 733 | 7.927629 | TCTTACGTGGAAACTTGTGTAGTTATT | 59.072 | 33.333 | 0.00 | 0.00 | 46.34 | 1.40 |
723 | 734 | 7.436118 | TCTTACGTGGAAACTTGTGTAGTTAT | 58.564 | 34.615 | 0.00 | 0.00 | 46.34 | 1.89 |
724 | 735 | 6.804677 | TCTTACGTGGAAACTTGTGTAGTTA | 58.195 | 36.000 | 0.00 | 0.00 | 46.34 | 2.24 |
726 | 737 | 5.266733 | TCTTACGTGGAAACTTGTGTAGT | 57.733 | 39.130 | 0.00 | 0.00 | 39.32 | 2.73 |
727 | 738 | 5.060569 | CGATCTTACGTGGAAACTTGTGTAG | 59.939 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
728 | 739 | 4.919168 | CGATCTTACGTGGAAACTTGTGTA | 59.081 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
729 | 740 | 3.739300 | CGATCTTACGTGGAAACTTGTGT | 59.261 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
730 | 741 | 3.985279 | TCGATCTTACGTGGAAACTTGTG | 59.015 | 43.478 | 0.00 | 0.00 | 34.70 | 3.33 |
731 | 742 | 4.247267 | TCGATCTTACGTGGAAACTTGT | 57.753 | 40.909 | 0.00 | 0.00 | 34.70 | 3.16 |
732 | 743 | 4.027621 | CGATCGATCTTACGTGGAAACTTG | 60.028 | 45.833 | 22.43 | 0.00 | 34.70 | 3.16 |
733 | 744 | 4.103357 | CGATCGATCTTACGTGGAAACTT | 58.897 | 43.478 | 22.43 | 0.00 | 34.70 | 2.66 |
734 | 745 | 3.488721 | CCGATCGATCTTACGTGGAAACT | 60.489 | 47.826 | 22.43 | 0.00 | 34.70 | 2.66 |
735 | 746 | 2.787680 | CCGATCGATCTTACGTGGAAAC | 59.212 | 50.000 | 22.43 | 0.00 | 34.70 | 2.78 |
736 | 747 | 2.684374 | TCCGATCGATCTTACGTGGAAA | 59.316 | 45.455 | 22.43 | 0.00 | 31.76 | 3.13 |
737 | 748 | 2.032550 | GTCCGATCGATCTTACGTGGAA | 59.967 | 50.000 | 22.43 | 3.95 | 34.41 | 3.53 |
738 | 749 | 1.600957 | GTCCGATCGATCTTACGTGGA | 59.399 | 52.381 | 22.43 | 16.77 | 34.70 | 4.02 |
739 | 750 | 1.602851 | AGTCCGATCGATCTTACGTGG | 59.397 | 52.381 | 22.43 | 14.83 | 34.70 | 4.94 |
740 | 751 | 2.602456 | CCAGTCCGATCGATCTTACGTG | 60.602 | 54.545 | 22.43 | 16.67 | 34.70 | 4.49 |
741 | 752 | 1.602851 | CCAGTCCGATCGATCTTACGT | 59.397 | 52.381 | 22.43 | 0.00 | 34.70 | 3.57 |
742 | 753 | 1.602851 | ACCAGTCCGATCGATCTTACG | 59.397 | 52.381 | 22.43 | 10.30 | 0.00 | 3.18 |
743 | 754 | 5.373981 | AATACCAGTCCGATCGATCTTAC | 57.626 | 43.478 | 22.43 | 18.52 | 0.00 | 2.34 |
744 | 755 | 7.013559 | TGTTAAATACCAGTCCGATCGATCTTA | 59.986 | 37.037 | 22.43 | 8.05 | 0.00 | 2.10 |
745 | 756 | 4.939052 | AAATACCAGTCCGATCGATCTT | 57.061 | 40.909 | 22.43 | 4.54 | 0.00 | 2.40 |
746 | 757 | 5.301045 | TGTTAAATACCAGTCCGATCGATCT | 59.699 | 40.000 | 22.43 | 11.30 | 0.00 | 2.75 |
747 | 758 | 5.526115 | TGTTAAATACCAGTCCGATCGATC | 58.474 | 41.667 | 18.66 | 15.68 | 0.00 | 3.69 |
748 | 759 | 5.524971 | TGTTAAATACCAGTCCGATCGAT | 57.475 | 39.130 | 18.66 | 0.00 | 0.00 | 3.59 |
749 | 760 | 4.987408 | TGTTAAATACCAGTCCGATCGA | 57.013 | 40.909 | 18.66 | 0.00 | 0.00 | 3.59 |
750 | 761 | 5.107133 | ACTTGTTAAATACCAGTCCGATCG | 58.893 | 41.667 | 8.51 | 8.51 | 26.84 | 3.69 |
751 | 762 | 6.338937 | AGACTTGTTAAATACCAGTCCGATC | 58.661 | 40.000 | 5.76 | 0.00 | 45.91 | 3.69 |
752 | 763 | 6.070995 | TGAGACTTGTTAAATACCAGTCCGAT | 60.071 | 38.462 | 5.76 | 0.00 | 45.91 | 4.18 |
753 | 764 | 5.244402 | TGAGACTTGTTAAATACCAGTCCGA | 59.756 | 40.000 | 5.76 | 0.00 | 45.91 | 4.55 |
754 | 765 | 5.475719 | TGAGACTTGTTAAATACCAGTCCG | 58.524 | 41.667 | 5.76 | 0.00 | 45.91 | 4.79 |
755 | 766 | 7.739498 | TTTGAGACTTGTTAAATACCAGTCC | 57.261 | 36.000 | 5.76 | 0.54 | 45.91 | 3.85 |
756 | 767 | 9.220767 | AGATTTGAGACTTGTTAAATACCAGTC | 57.779 | 33.333 | 0.00 | 0.00 | 45.39 | 3.51 |
757 | 768 | 9.574516 | AAGATTTGAGACTTGTTAAATACCAGT | 57.425 | 29.630 | 0.00 | 0.00 | 35.57 | 4.00 |
773 | 784 | 5.106118 | CCACGTCTCAGTCTAAGATTTGAGA | 60.106 | 44.000 | 8.19 | 8.19 | 42.61 | 3.27 |
774 | 785 | 5.098893 | CCACGTCTCAGTCTAAGATTTGAG | 58.901 | 45.833 | 0.00 | 0.00 | 38.67 | 3.02 |
775 | 786 | 4.618460 | GCCACGTCTCAGTCTAAGATTTGA | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
776 | 787 | 3.614616 | GCCACGTCTCAGTCTAAGATTTG | 59.385 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
777 | 788 | 3.673594 | CGCCACGTCTCAGTCTAAGATTT | 60.674 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
778 | 789 | 2.159366 | CGCCACGTCTCAGTCTAAGATT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 2.40 |
779 | 790 | 1.402259 | CGCCACGTCTCAGTCTAAGAT | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
780 | 791 | 0.803117 | CGCCACGTCTCAGTCTAAGA | 59.197 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
781 | 792 | 0.522180 | ACGCCACGTCTCAGTCTAAG | 59.478 | 55.000 | 0.00 | 0.00 | 33.69 | 2.18 |
782 | 793 | 1.812235 | TACGCCACGTCTCAGTCTAA | 58.188 | 50.000 | 0.00 | 0.00 | 41.54 | 2.10 |
783 | 794 | 2.034104 | ATACGCCACGTCTCAGTCTA | 57.966 | 50.000 | 0.00 | 0.00 | 41.54 | 2.59 |
784 | 795 | 2.034104 | TATACGCCACGTCTCAGTCT | 57.966 | 50.000 | 0.00 | 0.00 | 41.54 | 3.24 |
785 | 796 | 3.043586 | CAATATACGCCACGTCTCAGTC | 58.956 | 50.000 | 0.00 | 0.00 | 41.54 | 3.51 |
786 | 797 | 2.223735 | CCAATATACGCCACGTCTCAGT | 60.224 | 50.000 | 0.00 | 0.00 | 41.54 | 3.41 |
787 | 798 | 2.394708 | CCAATATACGCCACGTCTCAG | 58.605 | 52.381 | 0.00 | 0.00 | 41.54 | 3.35 |
788 | 799 | 1.537348 | GCCAATATACGCCACGTCTCA | 60.537 | 52.381 | 0.00 | 0.00 | 41.54 | 3.27 |
789 | 800 | 1.137513 | GCCAATATACGCCACGTCTC | 58.862 | 55.000 | 0.00 | 0.00 | 41.54 | 3.36 |
790 | 801 | 0.462375 | TGCCAATATACGCCACGTCT | 59.538 | 50.000 | 0.00 | 0.00 | 41.54 | 4.18 |
791 | 802 | 1.260561 | CTTGCCAATATACGCCACGTC | 59.739 | 52.381 | 0.00 | 0.00 | 41.54 | 4.34 |
792 | 803 | 1.295792 | CTTGCCAATATACGCCACGT | 58.704 | 50.000 | 0.00 | 0.00 | 44.35 | 4.49 |
793 | 804 | 1.260561 | GACTTGCCAATATACGCCACG | 59.739 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
794 | 805 | 1.602377 | GGACTTGCCAATATACGCCAC | 59.398 | 52.381 | 0.00 | 0.00 | 36.34 | 5.01 |
795 | 806 | 1.210722 | TGGACTTGCCAATATACGCCA | 59.789 | 47.619 | 0.00 | 0.00 | 45.87 | 5.69 |
796 | 807 | 1.961793 | TGGACTTGCCAATATACGCC | 58.038 | 50.000 | 0.00 | 0.00 | 45.87 | 5.68 |
834 | 845 | 2.097038 | CGCTTCGCACCTTGGAGAG | 61.097 | 63.158 | 0.00 | 0.00 | 0.00 | 3.20 |
862 | 873 | 2.360726 | GTACCTGGTTTGGGGCGG | 60.361 | 66.667 | 3.84 | 0.00 | 0.00 | 6.13 |
868 | 905 | 0.953960 | GGTGGAGCGTACCTGGTTTG | 60.954 | 60.000 | 3.84 | 0.00 | 35.30 | 2.93 |
871 | 908 | 3.379445 | CGGTGGAGCGTACCTGGT | 61.379 | 66.667 | 4.05 | 4.05 | 36.03 | 4.00 |
918 | 955 | 0.811281 | GAGGAAATCTGCAAACGGGG | 59.189 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
922 | 959 | 3.679389 | TGGAGAGAGGAAATCTGCAAAC | 58.321 | 45.455 | 0.00 | 0.00 | 41.46 | 2.93 |
969 | 1020 | 2.510238 | GAGTGCTGCGTAGGCTGG | 60.510 | 66.667 | 14.89 | 6.53 | 40.82 | 4.85 |
971 | 1022 | 2.997315 | TGGAGTGCTGCGTAGGCT | 60.997 | 61.111 | 9.11 | 0.00 | 40.82 | 4.58 |
972 | 1023 | 2.303549 | ATCTGGAGTGCTGCGTAGGC | 62.304 | 60.000 | 1.76 | 0.00 | 40.52 | 3.93 |
976 | 1027 | 0.390866 | CTGAATCTGGAGTGCTGCGT | 60.391 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
1270 | 1379 | 0.535102 | CCGGAGACACCAGCAAAGTT | 60.535 | 55.000 | 0.00 | 0.00 | 38.90 | 2.66 |
1334 | 1443 | 1.641577 | GATGTCCTTGTACTCGCCAC | 58.358 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1339 | 1448 | 2.480416 | CCTGAGCGATGTCCTTGTACTC | 60.480 | 54.545 | 0.00 | 0.00 | 0.00 | 2.59 |
1371 | 1483 | 0.839946 | GGCAGAGAAGGAGGCCATTA | 59.160 | 55.000 | 5.01 | 0.00 | 45.70 | 1.90 |
1388 | 1500 | 0.385974 | CTTGTTGTTGTAGCAGCGGC | 60.386 | 55.000 | 0.00 | 0.00 | 41.61 | 6.53 |
1416 | 1537 | 1.239347 | GGAAATAATCCTCTGCCCGC | 58.761 | 55.000 | 0.00 | 0.00 | 45.56 | 6.13 |
1417 | 1538 | 1.202651 | ACGGAAATAATCCTCTGCCCG | 60.203 | 52.381 | 0.00 | 0.00 | 46.98 | 6.13 |
1429 | 1550 | 1.987770 | GCAGACGACGAAACGGAAATA | 59.012 | 47.619 | 0.00 | 0.00 | 37.61 | 1.40 |
1503 | 1636 | 1.889829 | TGGTTATTTCTGTTTGCCGGG | 59.110 | 47.619 | 2.18 | 0.00 | 0.00 | 5.73 |
1631 | 1772 | 0.111832 | ACACCAGTCTCCTGTCCGTA | 59.888 | 55.000 | 0.00 | 0.00 | 36.95 | 4.02 |
1742 | 1904 | 2.434884 | CGTTCATGCGGTCCAGCT | 60.435 | 61.111 | 7.14 | 0.00 | 38.13 | 4.24 |
1743 | 1905 | 2.740714 | GACGTTCATGCGGTCCAGC | 61.741 | 63.158 | 0.00 | 0.00 | 35.98 | 4.85 |
1907 | 3020 | 3.594134 | CAGAATGCTCTCTCGGAAAACT | 58.406 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
1924 | 3037 | 0.250234 | CGATCCTTGAGCCACCAGAA | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2211 | 3373 | 3.612479 | GCACATGCTTGGTTTGAAGGTAG | 60.612 | 47.826 | 4.44 | 0.00 | 38.21 | 3.18 |
2545 | 3752 | 3.879295 | CAGGTTGACAATATGCACTAGGG | 59.121 | 47.826 | 0.00 | 0.00 | 0.00 | 3.53 |
2771 | 4035 | 9.384682 | GCATTTTTATTTCAGTTTTGGACATTG | 57.615 | 29.630 | 0.00 | 0.00 | 0.00 | 2.82 |
2888 | 4159 | 2.760650 | CCCCTTTTTCATAGGTGAAGCC | 59.239 | 50.000 | 0.00 | 0.00 | 44.62 | 4.35 |
3024 | 4298 | 0.108186 | TCTGCTGCATTACCCTGACG | 60.108 | 55.000 | 1.31 | 0.00 | 0.00 | 4.35 |
3025 | 4299 | 2.113860 | TTCTGCTGCATTACCCTGAC | 57.886 | 50.000 | 1.31 | 0.00 | 0.00 | 3.51 |
3026 | 4300 | 2.507058 | AGATTCTGCTGCATTACCCTGA | 59.493 | 45.455 | 1.31 | 0.00 | 0.00 | 3.86 |
3027 | 4301 | 2.617308 | CAGATTCTGCTGCATTACCCTG | 59.383 | 50.000 | 1.31 | 3.99 | 0.00 | 4.45 |
3051 | 4334 | 3.467119 | CGACGCGTACAGCCACAC | 61.467 | 66.667 | 13.97 | 0.00 | 44.76 | 3.82 |
3075 | 4358 | 3.568430 | GTGATTTTTCTTCCTTGACGGGT | 59.432 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
3076 | 4359 | 3.057526 | GGTGATTTTTCTTCCTTGACGGG | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 5.28 |
3079 | 4362 | 4.036380 | ACACGGTGATTTTTCTTCCTTGAC | 59.964 | 41.667 | 16.29 | 0.00 | 0.00 | 3.18 |
3080 | 4363 | 4.204012 | ACACGGTGATTTTTCTTCCTTGA | 58.796 | 39.130 | 16.29 | 0.00 | 0.00 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.