Multiple sequence alignment - TraesCS7D01G023000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G023000 chr7D 100.000 2486 0 0 1 2486 10803505 10805990 0.000000e+00 4591
1 TraesCS7D01G023000 chr7D 82.181 1128 119 29 593 1696 22477951 22476882 0.000000e+00 894
2 TraesCS7D01G023000 chr7D 88.546 454 36 6 1797 2248 10812055 10812494 1.010000e-148 536
3 TraesCS7D01G023000 chr7D 82.135 431 55 16 1039 1449 10595061 10594633 1.410000e-92 350
4 TraesCS7D01G023000 chr7D 92.825 223 14 1 2266 2486 10812478 10812700 3.080000e-84 322
5 TraesCS7D01G023000 chr7A 87.045 1482 118 30 625 2064 10016708 10018157 0.000000e+00 1605
6 TraesCS7D01G023000 chr7A 88.493 982 79 18 589 1547 9996778 9997748 0.000000e+00 1157
7 TraesCS7D01G023000 chr7A 92.105 342 24 2 1905 2243 10034621 10034962 1.730000e-131 479
8 TraesCS7D01G023000 chr7A 83.372 433 49 15 1039 1449 9720285 9719854 1.800000e-101 379
9 TraesCS7D01G023000 chr7A 91.707 205 13 1 2280 2480 10018602 10018806 5.230000e-72 281
10 TraesCS7D01G023000 chr7A 93.011 186 13 0 2054 2239 10018416 10018601 3.150000e-69 272
11 TraesCS7D01G023000 chr7A 86.463 229 20 7 2266 2486 10034951 10035176 8.880000e-60 241
12 TraesCS7D01G023000 chr7A 92.810 153 10 1 1774 1925 10034456 10034608 1.160000e-53 220
13 TraesCS7D01G023000 chr7A 89.510 143 15 0 385 527 152877934 152877792 5.460000e-42 182
14 TraesCS7D01G023000 chr4A 87.139 1143 104 23 548 1664 727842616 727841491 0.000000e+00 1256
15 TraesCS7D01G023000 chr4A 87.611 226 17 7 1322 1547 727804169 727803955 4.100000e-63 252
16 TraesCS7D01G023000 chr4A 75.427 293 57 14 1872 2159 728941444 728941162 7.220000e-26 128
17 TraesCS7D01G023000 chr4A 86.316 95 13 0 1368 1462 728329066 728329160 1.220000e-18 104
18 TraesCS7D01G023000 chr2D 97.708 480 11 0 1 480 377510501 377510980 0.000000e+00 826
19 TraesCS7D01G023000 chr5A 91.429 140 10 1 386 525 70739556 70739419 9.080000e-45 191
20 TraesCS7D01G023000 chr3B 91.729 133 10 1 381 513 15935613 15935744 1.520000e-42 183
21 TraesCS7D01G023000 chr3B 85.816 141 16 3 386 525 757252753 757252616 1.990000e-31 147
22 TraesCS7D01G023000 chr1A 86.452 155 17 3 393 544 23617211 23617058 1.530000e-37 167
23 TraesCS7D01G023000 chr7B 88.971 136 9 3 387 517 735392769 735392903 1.980000e-36 163
24 TraesCS7D01G023000 chr6B 86.164 159 13 7 376 530 70255748 70255595 1.980000e-36 163
25 TraesCS7D01G023000 chr6B 94.231 104 5 1 384 486 28821229 28821126 9.200000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G023000 chr7D 10803505 10805990 2485 False 4591.000000 4591 100.000000 1 2486 1 chr7D.!!$F1 2485
1 TraesCS7D01G023000 chr7D 22476882 22477951 1069 True 894.000000 894 82.181000 593 1696 1 chr7D.!!$R2 1103
2 TraesCS7D01G023000 chr7D 10812055 10812700 645 False 429.000000 536 90.685500 1797 2486 2 chr7D.!!$F2 689
3 TraesCS7D01G023000 chr7A 9996778 9997748 970 False 1157.000000 1157 88.493000 589 1547 1 chr7A.!!$F1 958
4 TraesCS7D01G023000 chr7A 10016708 10018806 2098 False 719.333333 1605 90.587667 625 2480 3 chr7A.!!$F2 1855
5 TraesCS7D01G023000 chr7A 10034456 10035176 720 False 313.333333 479 90.459333 1774 2486 3 chr7A.!!$F3 712
6 TraesCS7D01G023000 chr4A 727841491 727842616 1125 True 1256.000000 1256 87.139000 548 1664 1 chr4A.!!$R2 1116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.030908 CGGGTAGTTGCGAGAGGATC 59.969 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1560 0.592247 GCCGGATTATGCGCAAACAG 60.592 55.0 17.11 6.91 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.697431 GAGGATCGATCAACCTCTCG 57.303 55.000 25.93 0.00 44.54 4.04
22 23 1.950909 GAGGATCGATCAACCTCTCGT 59.049 52.381 25.93 0.34 44.54 4.18
23 24 3.139850 GAGGATCGATCAACCTCTCGTA 58.860 50.000 25.93 0.00 44.54 3.43
24 25 3.142951 AGGATCGATCAACCTCTCGTAG 58.857 50.000 25.93 0.00 36.33 3.51
25 26 3.139850 GGATCGATCAACCTCTCGTAGA 58.860 50.000 25.93 0.00 36.33 2.59
37 38 2.300996 TCGTAGAGACCCGGGTAGT 58.699 57.895 30.38 18.21 0.00 2.73
38 39 0.620556 TCGTAGAGACCCGGGTAGTT 59.379 55.000 30.38 16.01 0.00 2.24
39 40 0.737219 CGTAGAGACCCGGGTAGTTG 59.263 60.000 30.38 11.05 0.00 3.16
40 41 0.459078 GTAGAGACCCGGGTAGTTGC 59.541 60.000 30.38 14.50 0.00 4.17
41 42 1.033746 TAGAGACCCGGGTAGTTGCG 61.034 60.000 30.38 0.00 0.00 4.85
42 43 2.283388 AGACCCGGGTAGTTGCGA 60.283 61.111 30.38 0.00 0.00 5.10
43 44 2.183555 GACCCGGGTAGTTGCGAG 59.816 66.667 30.38 0.00 0.00 5.03
44 45 2.283388 ACCCGGGTAGTTGCGAGA 60.283 61.111 29.13 0.00 0.00 4.04
45 46 2.280823 GACCCGGGTAGTTGCGAGAG 62.281 65.000 30.38 0.00 0.00 3.20
46 47 2.494918 CCGGGTAGTTGCGAGAGG 59.505 66.667 0.00 0.00 0.00 3.69
47 48 2.050350 CCGGGTAGTTGCGAGAGGA 61.050 63.158 0.00 0.00 0.00 3.71
48 49 1.392710 CCGGGTAGTTGCGAGAGGAT 61.393 60.000 0.00 0.00 0.00 3.24
49 50 0.030908 CGGGTAGTTGCGAGAGGATC 59.969 60.000 0.00 0.00 0.00 3.36
62 63 2.810439 GAGGATCGATCAACCTCTGG 57.190 55.000 25.93 0.00 44.54 3.86
63 64 2.311463 GAGGATCGATCAACCTCTGGA 58.689 52.381 25.93 0.00 44.54 3.86
64 65 2.295909 GAGGATCGATCAACCTCTGGAG 59.704 54.545 25.93 0.00 44.54 3.86
73 74 3.543537 CCTCTGGAGGGATGGACG 58.456 66.667 8.68 0.00 44.87 4.79
74 75 1.381872 CCTCTGGAGGGATGGACGT 60.382 63.158 8.68 0.00 44.87 4.34
75 76 1.395826 CCTCTGGAGGGATGGACGTC 61.396 65.000 7.13 7.13 44.87 4.34
76 77 1.381327 TCTGGAGGGATGGACGTCC 60.381 63.158 28.17 28.17 43.81 4.79
85 86 3.066190 TGGACGTCCAGCCTACGG 61.066 66.667 33.23 0.00 44.48 4.02
86 87 3.834799 GGACGTCCAGCCTACGGG 61.835 72.222 29.75 0.00 44.48 5.28
87 88 2.753043 GACGTCCAGCCTACGGGA 60.753 66.667 3.51 0.00 44.48 5.14
88 89 2.043248 ACGTCCAGCCTACGGGAT 60.043 61.111 7.82 0.00 42.47 3.85
89 90 1.673808 GACGTCCAGCCTACGGGATT 61.674 60.000 3.51 0.00 42.47 3.01
90 91 1.227263 CGTCCAGCCTACGGGATTG 60.227 63.158 0.00 0.00 42.47 2.67
91 92 1.672854 CGTCCAGCCTACGGGATTGA 61.673 60.000 0.00 0.00 42.47 2.57
92 93 0.759346 GTCCAGCCTACGGGATTGAT 59.241 55.000 0.00 0.00 42.47 2.57
93 94 0.758734 TCCAGCCTACGGGATTGATG 59.241 55.000 0.00 0.00 34.97 3.07
94 95 0.250467 CCAGCCTACGGGATTGATGG 60.250 60.000 0.00 0.00 31.88 3.51
95 96 0.250467 CAGCCTACGGGATTGATGGG 60.250 60.000 0.00 0.00 33.58 4.00
96 97 1.073199 GCCTACGGGATTGATGGGG 59.927 63.158 0.00 0.00 33.58 4.96
97 98 1.761174 CCTACGGGATTGATGGGGG 59.239 63.158 0.00 0.00 33.58 5.40
98 99 0.766674 CCTACGGGATTGATGGGGGA 60.767 60.000 0.00 0.00 33.58 4.81
99 100 0.396811 CTACGGGATTGATGGGGGAC 59.603 60.000 0.00 0.00 0.00 4.46
100 101 1.404479 TACGGGATTGATGGGGGACG 61.404 60.000 0.00 0.00 0.00 4.79
101 102 2.439960 CGGGATTGATGGGGGACGA 61.440 63.158 0.00 0.00 0.00 4.20
102 103 1.148498 GGGATTGATGGGGGACGAC 59.852 63.158 0.00 0.00 0.00 4.34
103 104 1.632018 GGGATTGATGGGGGACGACA 61.632 60.000 0.00 0.00 0.00 4.35
104 105 0.179045 GGATTGATGGGGGACGACAG 60.179 60.000 0.00 0.00 0.00 3.51
105 106 0.830648 GATTGATGGGGGACGACAGA 59.169 55.000 0.00 0.00 0.00 3.41
106 107 0.833287 ATTGATGGGGGACGACAGAG 59.167 55.000 0.00 0.00 0.00 3.35
107 108 0.544357 TTGATGGGGGACGACAGAGT 60.544 55.000 0.00 0.00 0.00 3.24
108 109 0.544357 TGATGGGGGACGACAGAGTT 60.544 55.000 0.00 0.00 0.00 3.01
109 110 0.613777 GATGGGGGACGACAGAGTTT 59.386 55.000 0.00 0.00 0.00 2.66
110 111 1.003233 GATGGGGGACGACAGAGTTTT 59.997 52.381 0.00 0.00 0.00 2.43
111 112 0.841289 TGGGGGACGACAGAGTTTTT 59.159 50.000 0.00 0.00 0.00 1.94
130 131 4.415881 TTTTGGGAAAGGAAAAGAAGCC 57.584 40.909 0.00 0.00 0.00 4.35
131 132 1.616159 TGGGAAAGGAAAAGAAGCCG 58.384 50.000 0.00 0.00 0.00 5.52
132 133 1.133606 TGGGAAAGGAAAAGAAGCCGT 60.134 47.619 0.00 0.00 0.00 5.68
133 134 1.269723 GGGAAAGGAAAAGAAGCCGTG 59.730 52.381 0.00 0.00 0.00 4.94
134 135 1.335964 GGAAAGGAAAAGAAGCCGTGC 60.336 52.381 0.00 0.00 0.00 5.34
135 136 0.310854 AAAGGAAAAGAAGCCGTGCG 59.689 50.000 0.00 0.00 0.00 5.34
136 137 2.126850 GGAAAAGAAGCCGTGCGC 60.127 61.111 0.00 0.00 37.98 6.09
146 147 3.342627 CCGTGCGCTTGGAACGAA 61.343 61.111 17.52 0.00 39.64 3.85
147 148 2.170985 CGTGCGCTTGGAACGAAG 59.829 61.111 9.73 0.00 39.64 3.79
148 149 2.127232 GTGCGCTTGGAACGAAGC 60.127 61.111 9.73 10.62 44.21 3.86
157 158 4.848757 GCTTGGAACGAAGCATTAATAGG 58.151 43.478 14.64 0.00 46.46 2.57
158 159 4.574828 GCTTGGAACGAAGCATTAATAGGA 59.425 41.667 14.64 0.00 46.46 2.94
159 160 5.065988 GCTTGGAACGAAGCATTAATAGGAA 59.934 40.000 14.64 0.00 46.46 3.36
160 161 6.404293 GCTTGGAACGAAGCATTAATAGGAAA 60.404 38.462 14.64 0.00 46.46 3.13
161 162 7.455641 TTGGAACGAAGCATTAATAGGAAAA 57.544 32.000 0.00 0.00 0.00 2.29
162 163 7.083875 TGGAACGAAGCATTAATAGGAAAAG 57.916 36.000 0.00 0.00 0.00 2.27
163 164 6.094881 TGGAACGAAGCATTAATAGGAAAAGG 59.905 38.462 0.00 0.00 0.00 3.11
164 165 6.317893 GGAACGAAGCATTAATAGGAAAAGGA 59.682 38.462 0.00 0.00 0.00 3.36
165 166 7.148137 GGAACGAAGCATTAATAGGAAAAGGAA 60.148 37.037 0.00 0.00 0.00 3.36
166 167 7.696992 ACGAAGCATTAATAGGAAAAGGAAA 57.303 32.000 0.00 0.00 0.00 3.13
167 168 7.535997 ACGAAGCATTAATAGGAAAAGGAAAC 58.464 34.615 0.00 0.00 0.00 2.78
168 169 6.687105 CGAAGCATTAATAGGAAAAGGAAACG 59.313 38.462 0.00 0.00 0.00 3.60
169 170 7.462571 AAGCATTAATAGGAAAAGGAAACGT 57.537 32.000 0.00 0.00 0.00 3.99
170 171 8.570068 AAGCATTAATAGGAAAAGGAAACGTA 57.430 30.769 0.00 0.00 0.00 3.57
171 172 8.747538 AGCATTAATAGGAAAAGGAAACGTAT 57.252 30.769 0.00 0.00 0.00 3.06
172 173 9.185680 AGCATTAATAGGAAAAGGAAACGTATT 57.814 29.630 0.00 0.00 0.00 1.89
173 174 9.797556 GCATTAATAGGAAAAGGAAACGTATTT 57.202 29.630 0.00 0.00 0.00 1.40
178 179 8.959705 ATAGGAAAAGGAAACGTATTTCTAGG 57.040 34.615 0.00 0.00 43.33 3.02
179 180 7.012661 AGGAAAAGGAAACGTATTTCTAGGA 57.987 36.000 0.00 0.00 43.33 2.94
180 181 7.104290 AGGAAAAGGAAACGTATTTCTAGGAG 58.896 38.462 0.00 0.00 43.33 3.69
181 182 7.038516 AGGAAAAGGAAACGTATTTCTAGGAGA 60.039 37.037 0.00 0.00 43.33 3.71
182 183 7.605309 GGAAAAGGAAACGTATTTCTAGGAGAA 59.395 37.037 0.00 0.00 43.33 2.87
183 184 7.902387 AAAGGAAACGTATTTCTAGGAGAAC 57.098 36.000 0.00 0.00 43.33 3.01
184 185 6.854091 AGGAAACGTATTTCTAGGAGAACT 57.146 37.500 0.00 0.00 43.33 3.01
185 186 6.631962 AGGAAACGTATTTCTAGGAGAACTG 58.368 40.000 0.00 0.00 43.33 3.16
186 187 5.291371 GGAAACGTATTTCTAGGAGAACTGC 59.709 44.000 0.00 0.00 43.33 4.40
187 188 4.030134 ACGTATTTCTAGGAGAACTGCG 57.970 45.455 12.91 12.91 44.15 5.18
188 189 3.442977 ACGTATTTCTAGGAGAACTGCGT 59.557 43.478 13.92 13.92 45.59 5.24
189 190 3.791887 CGTATTTCTAGGAGAACTGCGTG 59.208 47.826 8.27 0.00 37.87 5.34
190 191 2.743636 TTTCTAGGAGAACTGCGTGG 57.256 50.000 0.00 0.00 33.26 4.94
191 192 0.895530 TTCTAGGAGAACTGCGTGGG 59.104 55.000 0.00 0.00 0.00 4.61
192 193 0.039180 TCTAGGAGAACTGCGTGGGA 59.961 55.000 0.00 0.00 0.00 4.37
193 194 0.457851 CTAGGAGAACTGCGTGGGAG 59.542 60.000 0.00 0.00 0.00 4.30
194 195 0.039180 TAGGAGAACTGCGTGGGAGA 59.961 55.000 0.00 0.00 0.00 3.71
195 196 0.832135 AGGAGAACTGCGTGGGAGAA 60.832 55.000 0.00 0.00 0.00 2.87
196 197 0.670854 GGAGAACTGCGTGGGAGAAC 60.671 60.000 0.00 0.00 0.00 3.01
197 198 0.033504 GAGAACTGCGTGGGAGAACA 59.966 55.000 0.00 0.00 0.00 3.18
198 199 0.034059 AGAACTGCGTGGGAGAACAG 59.966 55.000 0.00 0.00 36.22 3.16
199 200 0.951040 GAACTGCGTGGGAGAACAGG 60.951 60.000 0.00 0.00 34.40 4.00
200 201 1.696097 AACTGCGTGGGAGAACAGGT 61.696 55.000 0.00 0.00 34.40 4.00
201 202 0.830444 ACTGCGTGGGAGAACAGGTA 60.830 55.000 0.00 0.00 34.40 3.08
202 203 0.320374 CTGCGTGGGAGAACAGGTAA 59.680 55.000 0.00 0.00 0.00 2.85
203 204 0.981183 TGCGTGGGAGAACAGGTAAT 59.019 50.000 0.00 0.00 0.00 1.89
204 205 1.338674 TGCGTGGGAGAACAGGTAATG 60.339 52.381 0.00 0.00 0.00 1.90
205 206 1.066430 GCGTGGGAGAACAGGTAATGA 60.066 52.381 0.00 0.00 0.00 2.57
206 207 2.614481 GCGTGGGAGAACAGGTAATGAA 60.614 50.000 0.00 0.00 0.00 2.57
207 208 3.000727 CGTGGGAGAACAGGTAATGAAC 58.999 50.000 0.00 0.00 0.00 3.18
208 209 3.556213 CGTGGGAGAACAGGTAATGAACA 60.556 47.826 0.00 0.00 0.00 3.18
209 210 4.003648 GTGGGAGAACAGGTAATGAACAG 58.996 47.826 0.00 0.00 0.00 3.16
210 211 3.009033 TGGGAGAACAGGTAATGAACAGG 59.991 47.826 0.00 0.00 0.00 4.00
211 212 3.009143 GGGAGAACAGGTAATGAACAGGT 59.991 47.826 0.00 0.00 0.00 4.00
212 213 4.254492 GGAGAACAGGTAATGAACAGGTC 58.746 47.826 0.00 0.00 0.00 3.85
213 214 3.926616 AGAACAGGTAATGAACAGGTCG 58.073 45.455 0.00 0.00 0.00 4.79
214 215 3.576982 AGAACAGGTAATGAACAGGTCGA 59.423 43.478 0.00 0.00 0.00 4.20
215 216 3.594603 ACAGGTAATGAACAGGTCGAG 57.405 47.619 0.00 0.00 0.00 4.04
216 217 2.233922 ACAGGTAATGAACAGGTCGAGG 59.766 50.000 0.00 0.00 0.00 4.63
217 218 1.207329 AGGTAATGAACAGGTCGAGGC 59.793 52.381 0.00 0.00 0.00 4.70
218 219 1.066430 GGTAATGAACAGGTCGAGGCA 60.066 52.381 0.00 0.00 0.00 4.75
219 220 2.000447 GTAATGAACAGGTCGAGGCAC 59.000 52.381 0.00 0.00 0.00 5.01
220 221 0.396435 AATGAACAGGTCGAGGCACA 59.604 50.000 0.00 0.00 0.00 4.57
221 222 0.615331 ATGAACAGGTCGAGGCACAT 59.385 50.000 0.00 0.00 0.00 3.21
222 223 0.037326 TGAACAGGTCGAGGCACATC 60.037 55.000 0.00 0.00 0.00 3.06
223 224 0.247736 GAACAGGTCGAGGCACATCT 59.752 55.000 0.00 0.00 0.00 2.90
224 225 0.247736 AACAGGTCGAGGCACATCTC 59.752 55.000 0.00 0.00 0.00 2.75
225 226 1.142748 CAGGTCGAGGCACATCTCC 59.857 63.158 0.00 0.00 0.00 3.71
226 227 1.000993 AGGTCGAGGCACATCTCCT 59.999 57.895 0.00 0.00 36.46 3.69
227 228 1.040339 AGGTCGAGGCACATCTCCTC 61.040 60.000 0.00 0.00 45.12 3.71
234 235 2.826488 AGGCACATCTCCTCAAGTACT 58.174 47.619 0.00 0.00 0.00 2.73
235 236 2.763448 AGGCACATCTCCTCAAGTACTC 59.237 50.000 0.00 0.00 0.00 2.59
236 237 2.497675 GGCACATCTCCTCAAGTACTCA 59.502 50.000 0.00 0.00 0.00 3.41
237 238 3.516615 GCACATCTCCTCAAGTACTCAC 58.483 50.000 0.00 0.00 0.00 3.51
238 239 3.763902 CACATCTCCTCAAGTACTCACG 58.236 50.000 0.00 0.00 0.00 4.35
239 240 3.191581 CACATCTCCTCAAGTACTCACGT 59.808 47.826 0.00 0.00 0.00 4.49
240 241 3.191581 ACATCTCCTCAAGTACTCACGTG 59.808 47.826 9.94 9.94 35.70 4.49
241 242 3.136009 TCTCCTCAAGTACTCACGTGA 57.864 47.619 18.88 18.88 40.28 4.35
242 243 3.687125 TCTCCTCAAGTACTCACGTGAT 58.313 45.455 20.40 11.80 41.42 3.06
243 244 4.079970 TCTCCTCAAGTACTCACGTGATT 58.920 43.478 20.40 16.54 41.42 2.57
244 245 5.250982 TCTCCTCAAGTACTCACGTGATTA 58.749 41.667 20.40 15.36 41.42 1.75
245 246 5.886474 TCTCCTCAAGTACTCACGTGATTAT 59.114 40.000 20.40 10.38 41.42 1.28
246 247 7.052248 TCTCCTCAAGTACTCACGTGATTATA 58.948 38.462 20.40 9.34 41.42 0.98
247 248 7.720074 TCTCCTCAAGTACTCACGTGATTATAT 59.280 37.037 20.40 8.12 41.42 0.86
248 249 8.234136 TCCTCAAGTACTCACGTGATTATATT 57.766 34.615 20.40 13.37 41.42 1.28
249 250 8.692710 TCCTCAAGTACTCACGTGATTATATTT 58.307 33.333 20.40 11.72 41.42 1.40
250 251 9.314321 CCTCAAGTACTCACGTGATTATATTTT 57.686 33.333 20.40 8.50 41.42 1.82
254 255 9.871238 AAGTACTCACGTGATTATATTTTCTGT 57.129 29.630 20.40 11.01 0.00 3.41
255 256 9.871238 AGTACTCACGTGATTATATTTTCTGTT 57.129 29.630 20.40 0.00 0.00 3.16
258 259 9.314321 ACTCACGTGATTATATTTTCTGTTAGG 57.686 33.333 20.40 2.94 0.00 2.69
259 260 9.529325 CTCACGTGATTATATTTTCTGTTAGGA 57.471 33.333 20.40 0.00 0.00 2.94
262 263 9.193133 ACGTGATTATATTTTCTGTTAGGATCG 57.807 33.333 0.00 0.00 0.00 3.69
263 264 9.406828 CGTGATTATATTTTCTGTTAGGATCGA 57.593 33.333 0.00 0.00 0.00 3.59
270 271 7.761038 ATTTTCTGTTAGGATCGAACCTTTT 57.239 32.000 20.32 0.00 41.00 2.27
271 272 7.576861 TTTTCTGTTAGGATCGAACCTTTTT 57.423 32.000 20.32 0.00 41.00 1.94
302 303 8.880991 ACTGTTAGGATCGTATCTATTATGGT 57.119 34.615 0.00 0.00 0.00 3.55
303 304 9.310449 ACTGTTAGGATCGTATCTATTATGGTT 57.690 33.333 0.00 0.00 0.00 3.67
339 340 7.246171 ACAGTAGATCAAACATTGTAGGTCT 57.754 36.000 9.19 9.19 0.00 3.85
340 341 7.680730 ACAGTAGATCAAACATTGTAGGTCTT 58.319 34.615 9.42 0.00 0.00 3.01
341 342 8.157476 ACAGTAGATCAAACATTGTAGGTCTTT 58.843 33.333 9.42 0.00 0.00 2.52
342 343 9.003658 CAGTAGATCAAACATTGTAGGTCTTTT 57.996 33.333 9.42 0.00 0.00 2.27
352 353 9.908152 AACATTGTAGGTCTTTTAAACTATTGC 57.092 29.630 0.00 0.00 0.00 3.56
353 354 8.234546 ACATTGTAGGTCTTTTAAACTATTGCG 58.765 33.333 0.00 0.00 0.00 4.85
354 355 7.733402 TTGTAGGTCTTTTAAACTATTGCGT 57.267 32.000 0.00 0.00 0.00 5.24
355 356 7.124347 TGTAGGTCTTTTAAACTATTGCGTG 57.876 36.000 0.00 0.00 0.00 5.34
356 357 6.930164 TGTAGGTCTTTTAAACTATTGCGTGA 59.070 34.615 0.00 0.00 0.00 4.35
357 358 6.237313 AGGTCTTTTAAACTATTGCGTGAC 57.763 37.500 0.00 0.00 0.00 3.67
358 359 5.995897 AGGTCTTTTAAACTATTGCGTGACT 59.004 36.000 0.00 0.00 0.00 3.41
359 360 6.073222 AGGTCTTTTAAACTATTGCGTGACTG 60.073 38.462 0.00 0.00 0.00 3.51
360 361 6.073440 GGTCTTTTAAACTATTGCGTGACTGA 60.073 38.462 0.00 0.00 0.00 3.41
361 362 7.349711 GTCTTTTAAACTATTGCGTGACTGAA 58.650 34.615 0.00 0.00 0.00 3.02
362 363 8.015658 GTCTTTTAAACTATTGCGTGACTGAAT 58.984 33.333 0.00 0.00 0.00 2.57
363 364 8.564574 TCTTTTAAACTATTGCGTGACTGAATT 58.435 29.630 0.00 0.00 0.00 2.17
364 365 8.500837 TTTTAAACTATTGCGTGACTGAATTG 57.499 30.769 0.00 0.00 0.00 2.32
365 366 5.940192 AAACTATTGCGTGACTGAATTGA 57.060 34.783 0.00 0.00 0.00 2.57
366 367 5.536554 AACTATTGCGTGACTGAATTGAG 57.463 39.130 0.00 0.00 0.00 3.02
367 368 4.569943 ACTATTGCGTGACTGAATTGAGT 58.430 39.130 0.00 0.00 0.00 3.41
368 369 5.720202 ACTATTGCGTGACTGAATTGAGTA 58.280 37.500 0.00 0.00 0.00 2.59
369 370 6.163476 ACTATTGCGTGACTGAATTGAGTAA 58.837 36.000 0.00 0.00 0.00 2.24
370 371 5.940192 ATTGCGTGACTGAATTGAGTAAA 57.060 34.783 0.00 0.00 0.00 2.01
371 372 5.743026 TTGCGTGACTGAATTGAGTAAAA 57.257 34.783 0.00 0.00 0.00 1.52
372 373 5.090652 TGCGTGACTGAATTGAGTAAAAC 57.909 39.130 0.00 0.00 0.00 2.43
373 374 4.814234 TGCGTGACTGAATTGAGTAAAACT 59.186 37.500 0.00 0.00 0.00 2.66
374 375 5.986741 TGCGTGACTGAATTGAGTAAAACTA 59.013 36.000 0.00 0.00 0.00 2.24
375 376 6.480651 TGCGTGACTGAATTGAGTAAAACTAA 59.519 34.615 0.00 0.00 0.00 2.24
376 377 7.172532 TGCGTGACTGAATTGAGTAAAACTAAT 59.827 33.333 0.00 0.00 0.00 1.73
377 378 8.653338 GCGTGACTGAATTGAGTAAAACTAATA 58.347 33.333 0.00 0.00 0.00 0.98
378 379 9.953825 CGTGACTGAATTGAGTAAAACTAATAC 57.046 33.333 0.00 0.00 0.00 1.89
394 395 6.919775 ACTAATACTGGTATGATCTCCACC 57.080 41.667 0.00 0.00 0.00 4.61
395 396 4.873746 AATACTGGTATGATCTCCACCG 57.126 45.455 0.00 0.00 34.94 4.94
396 397 2.160721 ACTGGTATGATCTCCACCGT 57.839 50.000 0.00 0.00 34.94 4.83
397 398 2.467880 ACTGGTATGATCTCCACCGTT 58.532 47.619 0.00 0.00 34.94 4.44
398 399 3.638860 ACTGGTATGATCTCCACCGTTA 58.361 45.455 0.00 0.00 34.94 3.18
399 400 4.223953 ACTGGTATGATCTCCACCGTTAT 58.776 43.478 0.00 0.00 34.94 1.89
400 401 5.391256 ACTGGTATGATCTCCACCGTTATA 58.609 41.667 0.00 0.00 34.94 0.98
401 402 5.836898 ACTGGTATGATCTCCACCGTTATAA 59.163 40.000 0.00 0.00 34.94 0.98
402 403 6.497259 ACTGGTATGATCTCCACCGTTATAAT 59.503 38.462 0.00 0.00 34.94 1.28
403 404 7.016268 ACTGGTATGATCTCCACCGTTATAATT 59.984 37.037 0.00 0.00 34.94 1.40
404 405 7.741785 TGGTATGATCTCCACCGTTATAATTT 58.258 34.615 0.00 0.00 34.94 1.82
405 406 7.659799 TGGTATGATCTCCACCGTTATAATTTG 59.340 37.037 0.00 0.00 34.94 2.32
406 407 7.119262 GGTATGATCTCCACCGTTATAATTTGG 59.881 40.741 0.00 4.36 0.00 3.28
407 408 5.996644 TGATCTCCACCGTTATAATTTGGT 58.003 37.500 8.86 5.79 34.29 3.67
408 409 6.053005 TGATCTCCACCGTTATAATTTGGTC 58.947 40.000 4.54 0.56 30.72 4.02
409 410 4.773013 TCTCCACCGTTATAATTTGGTCC 58.227 43.478 4.54 0.00 30.72 4.46
410 411 3.881089 CTCCACCGTTATAATTTGGTCCC 59.119 47.826 4.54 0.00 30.72 4.46
411 412 3.266254 TCCACCGTTATAATTTGGTCCCA 59.734 43.478 4.54 0.00 30.72 4.37
412 413 3.379057 CCACCGTTATAATTTGGTCCCAC 59.621 47.826 4.54 0.00 30.72 4.61
413 414 3.064271 CACCGTTATAATTTGGTCCCACG 59.936 47.826 4.54 0.00 30.72 4.94
414 415 3.055240 ACCGTTATAATTTGGTCCCACGA 60.055 43.478 0.00 0.00 0.00 4.35
415 416 3.940221 CCGTTATAATTTGGTCCCACGAA 59.060 43.478 0.00 0.00 0.00 3.85
416 417 4.395542 CCGTTATAATTTGGTCCCACGAAA 59.604 41.667 0.00 0.00 30.67 3.46
417 418 5.066764 CCGTTATAATTTGGTCCCACGAAAT 59.933 40.000 0.00 0.00 37.98 2.17
418 419 6.404954 CCGTTATAATTTGGTCCCACGAAATT 60.405 38.462 12.23 12.23 44.66 1.82
419 420 7.201714 CCGTTATAATTTGGTCCCACGAAATTA 60.202 37.037 14.88 14.88 45.72 1.40
420 421 8.182881 CGTTATAATTTGGTCCCACGAAATTAA 58.817 33.333 15.90 5.04 45.22 1.40
421 422 9.292846 GTTATAATTTGGTCCCACGAAATTAAC 57.707 33.333 15.90 11.07 45.22 2.01
422 423 3.900388 TTTGGTCCCACGAAATTAACG 57.100 42.857 0.00 3.92 0.00 3.18
423 424 1.810959 TGGTCCCACGAAATTAACGG 58.189 50.000 9.19 0.00 34.93 4.44
424 425 0.448990 GGTCCCACGAAATTAACGGC 59.551 55.000 9.19 0.00 34.93 5.68
425 426 1.445871 GTCCCACGAAATTAACGGCT 58.554 50.000 9.19 0.00 34.93 5.52
426 427 1.395954 GTCCCACGAAATTAACGGCTC 59.604 52.381 9.19 0.00 34.93 4.70
427 428 0.372334 CCCACGAAATTAACGGCTCG 59.628 55.000 9.19 2.31 37.33 5.03
428 429 1.073177 CCACGAAATTAACGGCTCGT 58.927 50.000 9.19 2.89 44.85 4.18
429 430 2.261345 CCACGAAATTAACGGCTCGTA 58.739 47.619 0.65 0.00 42.28 3.43
430 431 2.667481 CCACGAAATTAACGGCTCGTAA 59.333 45.455 0.65 0.00 42.28 3.18
431 432 3.123284 CCACGAAATTAACGGCTCGTAAA 59.877 43.478 0.65 0.00 42.28 2.01
432 433 4.377226 CCACGAAATTAACGGCTCGTAAAA 60.377 41.667 0.65 0.50 42.28 1.52
433 434 5.318349 CACGAAATTAACGGCTCGTAAAAT 58.682 37.500 0.65 2.57 42.28 1.82
434 435 5.446899 CACGAAATTAACGGCTCGTAAAATC 59.553 40.000 0.65 0.00 42.28 2.17
435 436 5.349543 ACGAAATTAACGGCTCGTAAAATCT 59.650 36.000 0.00 0.00 42.36 2.40
436 437 5.671140 CGAAATTAACGGCTCGTAAAATCTG 59.329 40.000 0.62 0.00 39.99 2.90
437 438 6.454583 CGAAATTAACGGCTCGTAAAATCTGA 60.455 38.462 0.62 0.00 39.99 3.27
438 439 6.920569 AATTAACGGCTCGTAAAATCTGAT 57.079 33.333 0.62 0.00 39.99 2.90
439 440 6.920569 ATTAACGGCTCGTAAAATCTGATT 57.079 33.333 0.00 0.00 39.99 2.57
440 441 8.428186 AATTAACGGCTCGTAAAATCTGATTA 57.572 30.769 2.85 0.00 39.99 1.75
441 442 7.830940 TTAACGGCTCGTAAAATCTGATTAA 57.169 32.000 2.85 0.00 39.99 1.40
442 443 5.713822 ACGGCTCGTAAAATCTGATTAAC 57.286 39.130 2.85 4.76 38.73 2.01
443 444 4.266976 ACGGCTCGTAAAATCTGATTAACG 59.733 41.667 22.27 22.27 38.73 3.18
444 445 4.266976 CGGCTCGTAAAATCTGATTAACGT 59.733 41.667 24.88 8.61 34.96 3.99
445 446 5.490213 GGCTCGTAAAATCTGATTAACGTG 58.510 41.667 24.88 23.62 34.96 4.49
446 447 5.490213 GCTCGTAAAATCTGATTAACGTGG 58.510 41.667 24.88 20.93 34.96 4.94
447 448 5.501897 GCTCGTAAAATCTGATTAACGTGGG 60.502 44.000 24.88 19.46 34.96 4.61
448 449 5.722263 TCGTAAAATCTGATTAACGTGGGA 58.278 37.500 24.88 12.23 34.96 4.37
449 450 6.164876 TCGTAAAATCTGATTAACGTGGGAA 58.835 36.000 24.88 11.98 34.96 3.97
450 451 6.819649 TCGTAAAATCTGATTAACGTGGGAAT 59.180 34.615 24.88 0.00 34.96 3.01
451 452 7.334921 TCGTAAAATCTGATTAACGTGGGAATT 59.665 33.333 24.88 8.92 34.96 2.17
452 453 7.966204 CGTAAAATCTGATTAACGTGGGAATTT 59.034 33.333 20.98 5.75 31.24 1.82
455 456 6.598753 ATCTGATTAACGTGGGAATTTACG 57.401 37.500 0.00 8.63 45.19 3.18
456 457 4.871557 TCTGATTAACGTGGGAATTTACGG 59.128 41.667 13.06 0.00 44.07 4.02
457 458 3.940221 TGATTAACGTGGGAATTTACGGG 59.060 43.478 13.06 0.00 44.07 5.28
458 459 3.692257 TTAACGTGGGAATTTACGGGA 57.308 42.857 13.06 1.38 44.07 5.14
459 460 2.565046 AACGTGGGAATTTACGGGAA 57.435 45.000 13.06 0.00 44.07 3.97
460 461 2.103537 ACGTGGGAATTTACGGGAAG 57.896 50.000 13.06 0.00 44.07 3.46
461 462 1.348696 ACGTGGGAATTTACGGGAAGT 59.651 47.619 13.06 0.00 44.07 3.01
462 463 2.004733 CGTGGGAATTTACGGGAAGTC 58.995 52.381 0.00 0.00 36.71 3.01
463 464 2.613474 CGTGGGAATTTACGGGAAGTCA 60.613 50.000 3.56 0.00 36.71 3.41
464 465 3.414269 GTGGGAATTTACGGGAAGTCAA 58.586 45.455 3.56 0.00 0.00 3.18
465 466 3.439129 GTGGGAATTTACGGGAAGTCAAG 59.561 47.826 3.56 0.00 0.00 3.02
466 467 3.328343 TGGGAATTTACGGGAAGTCAAGA 59.672 43.478 3.56 0.00 0.00 3.02
467 468 4.202482 TGGGAATTTACGGGAAGTCAAGAA 60.202 41.667 3.56 0.00 0.00 2.52
468 469 4.948004 GGGAATTTACGGGAAGTCAAGAAT 59.052 41.667 3.56 0.00 0.00 2.40
469 470 5.417894 GGGAATTTACGGGAAGTCAAGAATT 59.582 40.000 3.56 0.00 0.00 2.17
470 471 6.600427 GGGAATTTACGGGAAGTCAAGAATTA 59.400 38.462 3.56 0.00 0.00 1.40
471 472 7.201705 GGGAATTTACGGGAAGTCAAGAATTAG 60.202 40.741 3.56 0.00 0.00 1.73
472 473 7.336176 GGAATTTACGGGAAGTCAAGAATTAGT 59.664 37.037 3.56 0.00 0.00 2.24
473 474 9.374838 GAATTTACGGGAAGTCAAGAATTAGTA 57.625 33.333 0.00 0.00 0.00 1.82
474 475 9.901172 AATTTACGGGAAGTCAAGAATTAGTAT 57.099 29.630 0.00 0.00 0.00 2.12
477 478 7.052142 ACGGGAAGTCAAGAATTAGTATAGG 57.948 40.000 0.00 0.00 0.00 2.57
478 479 6.610425 ACGGGAAGTCAAGAATTAGTATAGGT 59.390 38.462 0.00 0.00 0.00 3.08
479 480 7.781693 ACGGGAAGTCAAGAATTAGTATAGGTA 59.218 37.037 0.00 0.00 0.00 3.08
480 481 8.298140 CGGGAAGTCAAGAATTAGTATAGGTAG 58.702 40.741 0.00 0.00 0.00 3.18
481 482 8.586744 GGGAAGTCAAGAATTAGTATAGGTAGG 58.413 40.741 0.00 0.00 0.00 3.18
482 483 9.145442 GGAAGTCAAGAATTAGTATAGGTAGGT 57.855 37.037 0.00 0.00 0.00 3.08
703 705 4.401202 CACCACCCAACTAATCATTAACCC 59.599 45.833 0.00 0.00 0.00 4.11
786 800 1.667236 CTGTGTTTGTCCACTGCAGA 58.333 50.000 23.35 0.00 36.30 4.26
804 818 1.137872 AGAACATCTCTGTCGCCATCC 59.862 52.381 0.00 0.00 33.36 3.51
857 871 0.823460 CTCCTTCCTCTGTCCAGCTC 59.177 60.000 0.00 0.00 0.00 4.09
858 872 0.616111 TCCTTCCTCTGTCCAGCTCC 60.616 60.000 0.00 0.00 0.00 4.70
859 873 0.617249 CCTTCCTCTGTCCAGCTCCT 60.617 60.000 0.00 0.00 0.00 3.69
860 874 0.823460 CTTCCTCTGTCCAGCTCCTC 59.177 60.000 0.00 0.00 0.00 3.71
863 877 0.617249 CCTCTGTCCAGCTCCTCCTT 60.617 60.000 0.00 0.00 0.00 3.36
864 878 1.342474 CCTCTGTCCAGCTCCTCCTTA 60.342 57.143 0.00 0.00 0.00 2.69
865 879 2.461695 CTCTGTCCAGCTCCTCCTTAA 58.538 52.381 0.00 0.00 0.00 1.85
904 920 0.597568 GTAGCTTTGTGTGCCATGCA 59.402 50.000 0.00 0.00 35.60 3.96
933 949 5.047377 CACTCCTCTTTCTCTAACTCTGCTT 60.047 44.000 0.00 0.00 0.00 3.91
944 961 0.694771 ACTCTGCTTGATTGGGCTGA 59.305 50.000 0.00 0.00 35.67 4.26
945 962 1.380524 CTCTGCTTGATTGGGCTGAG 58.619 55.000 0.00 0.00 43.84 3.35
992 1022 1.218763 TCTCCGACGATCGAGATCAC 58.781 55.000 24.34 4.82 43.74 3.06
1037 1067 1.301716 TGTTTCCAGAGTGCGAGGC 60.302 57.895 0.00 0.00 0.00 4.70
1156 1186 1.151450 AGCTTTGACCACCCCACTG 59.849 57.895 0.00 0.00 0.00 3.66
1458 1497 3.157949 CTCCCGCCCTTCCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
1640 1695 4.195334 ATGGAGGCCATGGCGGTC 62.195 66.667 29.90 26.28 43.39 4.79
1696 1770 7.759886 TCCTTTGTAGAGATTCTCACAATAACG 59.240 37.037 21.55 14.49 34.37 3.18
1699 1773 6.561614 TGTAGAGATTCTCACAATAACGTCC 58.438 40.000 15.83 0.00 32.06 4.79
1700 1774 5.012328 AGAGATTCTCACAATAACGTCCC 57.988 43.478 15.83 0.00 32.06 4.46
1701 1775 4.120589 GAGATTCTCACAATAACGTCCCC 58.879 47.826 8.84 0.00 0.00 4.81
1702 1776 3.517901 AGATTCTCACAATAACGTCCCCA 59.482 43.478 0.00 0.00 0.00 4.96
1703 1777 3.328382 TTCTCACAATAACGTCCCCAG 57.672 47.619 0.00 0.00 0.00 4.45
1704 1778 1.066430 TCTCACAATAACGTCCCCAGC 60.066 52.381 0.00 0.00 0.00 4.85
1705 1779 0.035820 TCACAATAACGTCCCCAGCC 60.036 55.000 0.00 0.00 0.00 4.85
1706 1780 1.029947 CACAATAACGTCCCCAGCCC 61.030 60.000 0.00 0.00 0.00 5.19
1734 1808 4.733077 TGGGGATTACTTCCTTGTTCAA 57.267 40.909 0.00 0.00 44.75 2.69
1735 1809 4.662278 TGGGGATTACTTCCTTGTTCAAG 58.338 43.478 5.66 5.66 44.75 3.02
1745 1819 3.399330 TCCTTGTTCAAGCTTCGGTTAG 58.601 45.455 0.00 0.00 0.00 2.34
1756 1830 4.394729 AGCTTCGGTTAGTTTGGATTTCA 58.605 39.130 0.00 0.00 0.00 2.69
1762 1836 6.908825 TCGGTTAGTTTGGATTTCATTCAAG 58.091 36.000 0.00 0.00 0.00 3.02
1837 1931 6.443849 GGGGTGAATCTGAATATATGTAGGGA 59.556 42.308 0.00 0.00 0.00 4.20
2025 2155 6.651643 CCTTCTTGGAAATGCATTTTGATTCA 59.348 34.615 24.81 14.92 38.35 2.57
2038 2168 6.753744 GCATTTTGATTCAACTGGATTACCTC 59.246 38.462 0.00 0.00 37.04 3.85
2109 2509 2.745152 GCCGCATACCTACCAAGACATT 60.745 50.000 0.00 0.00 0.00 2.71
2117 2517 8.034804 GCATACCTACCAAGACATTCAATTTTT 58.965 33.333 0.00 0.00 0.00 1.94
2162 2562 5.831525 TCGTCCACTAATATCTGCTTCCTTA 59.168 40.000 0.00 0.00 0.00 2.69
2255 2655 7.916914 AAGAATAACTTTGTTACCGTATGCT 57.083 32.000 0.00 0.00 34.94 3.79
2256 2656 7.916914 AGAATAACTTTGTTACCGTATGCTT 57.083 32.000 0.00 0.00 0.00 3.91
2257 2657 9.439500 AAGAATAACTTTGTTACCGTATGCTTA 57.561 29.630 0.00 0.00 34.94 3.09
2258 2658 8.876790 AGAATAACTTTGTTACCGTATGCTTAC 58.123 33.333 0.00 0.00 0.00 2.34
2259 2659 8.550710 AATAACTTTGTTACCGTATGCTTACA 57.449 30.769 10.09 0.00 0.00 2.41
2260 2660 8.726870 ATAACTTTGTTACCGTATGCTTACAT 57.273 30.769 10.09 0.64 40.49 2.29
2261 2661 6.657836 ACTTTGTTACCGTATGCTTACATC 57.342 37.500 10.09 0.00 37.74 3.06
2262 2662 6.403878 ACTTTGTTACCGTATGCTTACATCT 58.596 36.000 10.09 0.00 37.74 2.90
2263 2663 6.534079 ACTTTGTTACCGTATGCTTACATCTC 59.466 38.462 10.09 0.00 37.74 2.75
2264 2664 5.585820 TGTTACCGTATGCTTACATCTCA 57.414 39.130 10.09 0.69 37.74 3.27
2265 2665 5.968254 TGTTACCGTATGCTTACATCTCAA 58.032 37.500 10.09 0.00 37.74 3.02
2266 2666 6.399743 TGTTACCGTATGCTTACATCTCAAA 58.600 36.000 10.09 0.00 37.74 2.69
2267 2667 6.874664 TGTTACCGTATGCTTACATCTCAAAA 59.125 34.615 10.09 0.00 37.74 2.44
2268 2668 7.388224 TGTTACCGTATGCTTACATCTCAAAAA 59.612 33.333 10.09 0.00 37.74 1.94
2316 2716 3.945921 GGACCAAACTATTAACTGGGCTC 59.054 47.826 0.00 0.00 37.13 4.70
2472 2884 4.029186 CGCGTGTGCAAGCCATGT 62.029 61.111 0.00 0.00 42.97 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.950909 ACGAGAGGTTGATCGATCCTC 59.049 52.381 22.31 20.60 45.56 3.71
3 4 2.060050 ACGAGAGGTTGATCGATCCT 57.940 50.000 22.31 13.22 41.40 3.24
4 5 3.139850 TCTACGAGAGGTTGATCGATCC 58.860 50.000 22.31 8.23 41.40 3.36
6 7 3.810941 GTCTCTACGAGAGGTTGATCGAT 59.189 47.826 0.00 0.00 42.54 3.59
7 8 3.196463 GTCTCTACGAGAGGTTGATCGA 58.804 50.000 10.65 0.00 42.54 3.59
8 9 2.288458 GGTCTCTACGAGAGGTTGATCG 59.712 54.545 10.65 0.00 42.54 3.69
9 10 2.619646 GGGTCTCTACGAGAGGTTGATC 59.380 54.545 10.65 0.00 42.54 2.92
10 11 2.657143 GGGTCTCTACGAGAGGTTGAT 58.343 52.381 10.65 0.00 42.54 2.57
11 12 1.678123 CGGGTCTCTACGAGAGGTTGA 60.678 57.143 10.65 0.00 42.54 3.18
12 13 0.733729 CGGGTCTCTACGAGAGGTTG 59.266 60.000 10.65 0.00 42.54 3.77
13 14 0.394080 CCGGGTCTCTACGAGAGGTT 60.394 60.000 0.00 0.00 42.54 3.50
14 15 1.224039 CCGGGTCTCTACGAGAGGT 59.776 63.158 0.00 0.00 42.54 3.85
15 16 1.526455 CCCGGGTCTCTACGAGAGG 60.526 68.421 14.18 0.00 42.54 3.69
16 17 0.467384 TACCCGGGTCTCTACGAGAG 59.533 60.000 34.27 0.00 43.64 3.20
17 18 0.467384 CTACCCGGGTCTCTACGAGA 59.533 60.000 34.27 8.34 36.22 4.04
18 19 0.179936 ACTACCCGGGTCTCTACGAG 59.820 60.000 34.27 22.74 0.00 4.18
19 20 0.620556 AACTACCCGGGTCTCTACGA 59.379 55.000 34.27 10.14 0.00 3.43
20 21 0.737219 CAACTACCCGGGTCTCTACG 59.263 60.000 34.27 14.90 0.00 3.51
21 22 0.459078 GCAACTACCCGGGTCTCTAC 59.541 60.000 34.27 15.12 0.00 2.59
22 23 1.033746 CGCAACTACCCGGGTCTCTA 61.034 60.000 34.27 12.42 0.00 2.43
23 24 2.348888 CGCAACTACCCGGGTCTCT 61.349 63.158 34.27 13.01 0.00 3.10
24 25 2.183555 CGCAACTACCCGGGTCTC 59.816 66.667 34.27 14.57 0.00 3.36
25 26 2.283388 TCGCAACTACCCGGGTCT 60.283 61.111 34.27 14.60 0.00 3.85
26 27 2.183555 CTCGCAACTACCCGGGTC 59.816 66.667 34.27 15.15 0.00 4.46
27 28 2.283388 TCTCGCAACTACCCGGGT 60.283 61.111 32.66 32.66 0.00 5.28
28 29 2.494918 CTCTCGCAACTACCCGGG 59.505 66.667 22.25 22.25 0.00 5.73
29 30 1.392710 ATCCTCTCGCAACTACCCGG 61.393 60.000 0.00 0.00 0.00 5.73
30 31 0.030908 GATCCTCTCGCAACTACCCG 59.969 60.000 0.00 0.00 0.00 5.28
31 32 0.030908 CGATCCTCTCGCAACTACCC 59.969 60.000 0.00 0.00 41.14 3.69
32 33 3.553597 CGATCCTCTCGCAACTACC 57.446 57.895 0.00 0.00 41.14 3.18
43 44 2.295909 CTCCAGAGGTTGATCGATCCTC 59.704 54.545 22.31 20.60 45.56 3.71
44 45 2.315176 CTCCAGAGGTTGATCGATCCT 58.685 52.381 22.31 13.22 0.00 3.24
45 46 1.342819 CCTCCAGAGGTTGATCGATCC 59.657 57.143 22.31 8.23 43.61 3.36
46 47 2.810439 CCTCCAGAGGTTGATCGATC 57.190 55.000 18.72 18.72 43.61 3.69
57 58 1.395826 GGACGTCCATCCCTCCAGAG 61.396 65.000 29.75 0.00 35.64 3.35
58 59 1.381327 GGACGTCCATCCCTCCAGA 60.381 63.158 29.75 0.00 35.64 3.86
59 60 1.680522 CTGGACGTCCATCCCTCCAG 61.681 65.000 36.21 18.79 46.46 3.86
60 61 1.685765 CTGGACGTCCATCCCTCCA 60.686 63.158 36.21 12.90 46.46 3.86
61 62 3.095347 GCTGGACGTCCATCCCTCC 62.095 68.421 36.21 16.62 46.46 4.30
62 63 2.501610 GCTGGACGTCCATCCCTC 59.498 66.667 36.21 18.81 46.46 4.30
63 64 3.083997 GGCTGGACGTCCATCCCT 61.084 66.667 36.92 0.00 44.49 4.20
66 67 1.065928 CGTAGGCTGGACGTCCATC 59.934 63.158 36.21 31.19 46.46 3.51
67 68 2.423898 CCGTAGGCTGGACGTCCAT 61.424 63.158 36.21 24.37 46.14 3.41
68 69 3.066190 CCGTAGGCTGGACGTCCA 61.066 66.667 34.13 34.13 46.14 4.02
80 81 0.396811 GTCCCCCATCAATCCCGTAG 59.603 60.000 0.00 0.00 0.00 3.51
81 82 1.404479 CGTCCCCCATCAATCCCGTA 61.404 60.000 0.00 0.00 0.00 4.02
82 83 2.742116 CGTCCCCCATCAATCCCGT 61.742 63.158 0.00 0.00 0.00 5.28
83 84 2.111043 CGTCCCCCATCAATCCCG 59.889 66.667 0.00 0.00 0.00 5.14
84 85 1.148498 GTCGTCCCCCATCAATCCC 59.852 63.158 0.00 0.00 0.00 3.85
85 86 0.179045 CTGTCGTCCCCCATCAATCC 60.179 60.000 0.00 0.00 0.00 3.01
86 87 0.830648 TCTGTCGTCCCCCATCAATC 59.169 55.000 0.00 0.00 0.00 2.67
87 88 0.833287 CTCTGTCGTCCCCCATCAAT 59.167 55.000 0.00 0.00 0.00 2.57
88 89 0.544357 ACTCTGTCGTCCCCCATCAA 60.544 55.000 0.00 0.00 0.00 2.57
89 90 0.544357 AACTCTGTCGTCCCCCATCA 60.544 55.000 0.00 0.00 0.00 3.07
90 91 0.613777 AAACTCTGTCGTCCCCCATC 59.386 55.000 0.00 0.00 0.00 3.51
91 92 1.064825 AAAACTCTGTCGTCCCCCAT 58.935 50.000 0.00 0.00 0.00 4.00
92 93 0.841289 AAAAACTCTGTCGTCCCCCA 59.159 50.000 0.00 0.00 0.00 4.96
93 94 3.719816 AAAAACTCTGTCGTCCCCC 57.280 52.632 0.00 0.00 0.00 5.40
108 109 4.682050 CGGCTTCTTTTCCTTTCCCAAAAA 60.682 41.667 0.00 0.00 0.00 1.94
109 110 3.181470 CGGCTTCTTTTCCTTTCCCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
110 111 2.364002 CGGCTTCTTTTCCTTTCCCAAA 59.636 45.455 0.00 0.00 0.00 3.28
111 112 1.960689 CGGCTTCTTTTCCTTTCCCAA 59.039 47.619 0.00 0.00 0.00 4.12
112 113 1.133606 ACGGCTTCTTTTCCTTTCCCA 60.134 47.619 0.00 0.00 0.00 4.37
113 114 1.269723 CACGGCTTCTTTTCCTTTCCC 59.730 52.381 0.00 0.00 0.00 3.97
114 115 1.335964 GCACGGCTTCTTTTCCTTTCC 60.336 52.381 0.00 0.00 0.00 3.13
115 116 1.663161 CGCACGGCTTCTTTTCCTTTC 60.663 52.381 0.00 0.00 0.00 2.62
116 117 0.310854 CGCACGGCTTCTTTTCCTTT 59.689 50.000 0.00 0.00 0.00 3.11
117 118 1.949257 CGCACGGCTTCTTTTCCTT 59.051 52.632 0.00 0.00 0.00 3.36
118 119 2.617274 GCGCACGGCTTCTTTTCCT 61.617 57.895 0.30 0.00 39.11 3.36
119 120 2.126850 GCGCACGGCTTCTTTTCC 60.127 61.111 0.30 0.00 39.11 3.13
129 130 3.295228 CTTCGTTCCAAGCGCACGG 62.295 63.158 11.47 9.88 34.61 4.94
130 131 2.170985 CTTCGTTCCAAGCGCACG 59.829 61.111 11.47 10.96 35.18 5.34
131 132 2.127232 GCTTCGTTCCAAGCGCAC 60.127 61.111 11.47 0.00 39.55 5.34
136 137 6.677781 TTCCTATTAATGCTTCGTTCCAAG 57.322 37.500 0.00 0.00 0.00 3.61
137 138 7.362574 CCTTTTCCTATTAATGCTTCGTTCCAA 60.363 37.037 0.00 0.00 0.00 3.53
138 139 6.094881 CCTTTTCCTATTAATGCTTCGTTCCA 59.905 38.462 0.00 0.00 0.00 3.53
139 140 6.317893 TCCTTTTCCTATTAATGCTTCGTTCC 59.682 38.462 0.00 0.00 0.00 3.62
140 141 7.316544 TCCTTTTCCTATTAATGCTTCGTTC 57.683 36.000 0.00 0.00 0.00 3.95
141 142 7.696992 TTCCTTTTCCTATTAATGCTTCGTT 57.303 32.000 0.00 0.00 0.00 3.85
142 143 7.535997 GTTTCCTTTTCCTATTAATGCTTCGT 58.464 34.615 0.00 0.00 0.00 3.85
143 144 6.687105 CGTTTCCTTTTCCTATTAATGCTTCG 59.313 38.462 0.00 0.00 0.00 3.79
144 145 7.535997 ACGTTTCCTTTTCCTATTAATGCTTC 58.464 34.615 0.00 0.00 0.00 3.86
145 146 7.462571 ACGTTTCCTTTTCCTATTAATGCTT 57.537 32.000 0.00 0.00 0.00 3.91
146 147 8.747538 ATACGTTTCCTTTTCCTATTAATGCT 57.252 30.769 0.00 0.00 0.00 3.79
147 148 9.797556 AAATACGTTTCCTTTTCCTATTAATGC 57.202 29.630 0.00 0.00 0.00 3.56
152 153 9.392259 CCTAGAAATACGTTTCCTTTTCCTATT 57.608 33.333 0.00 0.00 43.82 1.73
153 154 8.765517 TCCTAGAAATACGTTTCCTTTTCCTAT 58.234 33.333 0.00 0.00 43.82 2.57
154 155 8.137745 TCCTAGAAATACGTTTCCTTTTCCTA 57.862 34.615 0.00 0.00 43.82 2.94
155 156 7.012661 TCCTAGAAATACGTTTCCTTTTCCT 57.987 36.000 0.00 0.00 43.82 3.36
156 157 7.101700 TCTCCTAGAAATACGTTTCCTTTTCC 58.898 38.462 0.00 0.00 43.82 3.13
157 158 8.441608 GTTCTCCTAGAAATACGTTTCCTTTTC 58.558 37.037 0.00 0.00 43.82 2.29
158 159 8.155510 AGTTCTCCTAGAAATACGTTTCCTTTT 58.844 33.333 0.00 0.00 43.82 2.27
159 160 7.603024 CAGTTCTCCTAGAAATACGTTTCCTTT 59.397 37.037 0.00 0.00 43.82 3.11
160 161 7.097834 CAGTTCTCCTAGAAATACGTTTCCTT 58.902 38.462 0.00 0.00 43.82 3.36
161 162 6.631962 CAGTTCTCCTAGAAATACGTTTCCT 58.368 40.000 0.00 0.00 43.82 3.36
162 163 5.291371 GCAGTTCTCCTAGAAATACGTTTCC 59.709 44.000 0.00 0.00 43.82 3.13
163 164 5.004535 CGCAGTTCTCCTAGAAATACGTTTC 59.995 44.000 0.00 0.00 43.24 2.78
164 165 4.863131 CGCAGTTCTCCTAGAAATACGTTT 59.137 41.667 0.00 0.00 35.22 3.60
165 166 4.082354 ACGCAGTTCTCCTAGAAATACGTT 60.082 41.667 8.96 0.00 46.06 3.99
166 167 3.442977 ACGCAGTTCTCCTAGAAATACGT 59.557 43.478 8.96 8.96 44.29 3.57
167 168 3.791887 CACGCAGTTCTCCTAGAAATACG 59.208 47.826 7.86 7.86 42.62 3.06
168 169 4.113354 CCACGCAGTTCTCCTAGAAATAC 58.887 47.826 0.00 0.00 41.61 1.89
169 170 3.132289 CCCACGCAGTTCTCCTAGAAATA 59.868 47.826 0.00 0.00 41.61 1.40
170 171 2.093447 CCCACGCAGTTCTCCTAGAAAT 60.093 50.000 0.00 0.00 41.61 2.17
171 172 1.275291 CCCACGCAGTTCTCCTAGAAA 59.725 52.381 0.00 0.00 41.61 2.52
172 173 0.895530 CCCACGCAGTTCTCCTAGAA 59.104 55.000 0.00 0.00 41.61 2.10
173 174 0.039180 TCCCACGCAGTTCTCCTAGA 59.961 55.000 0.00 0.00 41.61 2.43
174 175 0.457851 CTCCCACGCAGTTCTCCTAG 59.542 60.000 0.00 0.00 41.61 3.02
175 176 0.039180 TCTCCCACGCAGTTCTCCTA 59.961 55.000 0.00 0.00 41.61 2.94
176 177 0.832135 TTCTCCCACGCAGTTCTCCT 60.832 55.000 0.00 0.00 41.61 3.69
177 178 0.670854 GTTCTCCCACGCAGTTCTCC 60.671 60.000 0.00 0.00 41.61 3.71
178 179 0.033504 TGTTCTCCCACGCAGTTCTC 59.966 55.000 0.00 0.00 41.61 2.87
179 180 0.034059 CTGTTCTCCCACGCAGTTCT 59.966 55.000 0.00 0.00 41.61 3.01
180 181 0.951040 CCTGTTCTCCCACGCAGTTC 60.951 60.000 0.00 0.00 41.61 3.01
181 182 1.071471 CCTGTTCTCCCACGCAGTT 59.929 57.895 0.00 0.00 41.61 3.16
183 184 0.320374 TTACCTGTTCTCCCACGCAG 59.680 55.000 0.00 0.00 0.00 5.18
184 185 0.981183 ATTACCTGTTCTCCCACGCA 59.019 50.000 0.00 0.00 0.00 5.24
185 186 1.066430 TCATTACCTGTTCTCCCACGC 60.066 52.381 0.00 0.00 0.00 5.34
186 187 3.000727 GTTCATTACCTGTTCTCCCACG 58.999 50.000 0.00 0.00 0.00 4.94
187 188 4.003648 CTGTTCATTACCTGTTCTCCCAC 58.996 47.826 0.00 0.00 0.00 4.61
188 189 3.009033 CCTGTTCATTACCTGTTCTCCCA 59.991 47.826 0.00 0.00 0.00 4.37
189 190 3.009143 ACCTGTTCATTACCTGTTCTCCC 59.991 47.826 0.00 0.00 0.00 4.30
190 191 4.254492 GACCTGTTCATTACCTGTTCTCC 58.746 47.826 0.00 0.00 0.00 3.71
191 192 3.927142 CGACCTGTTCATTACCTGTTCTC 59.073 47.826 0.00 0.00 0.00 2.87
192 193 3.576982 TCGACCTGTTCATTACCTGTTCT 59.423 43.478 0.00 0.00 0.00 3.01
193 194 3.921677 TCGACCTGTTCATTACCTGTTC 58.078 45.455 0.00 0.00 0.00 3.18
194 195 3.306780 CCTCGACCTGTTCATTACCTGTT 60.307 47.826 0.00 0.00 0.00 3.16
195 196 2.233922 CCTCGACCTGTTCATTACCTGT 59.766 50.000 0.00 0.00 0.00 4.00
196 197 2.893637 CCTCGACCTGTTCATTACCTG 58.106 52.381 0.00 0.00 0.00 4.00
197 198 1.207329 GCCTCGACCTGTTCATTACCT 59.793 52.381 0.00 0.00 0.00 3.08
198 199 1.066430 TGCCTCGACCTGTTCATTACC 60.066 52.381 0.00 0.00 0.00 2.85
199 200 2.000447 GTGCCTCGACCTGTTCATTAC 59.000 52.381 0.00 0.00 0.00 1.89
200 201 1.621317 TGTGCCTCGACCTGTTCATTA 59.379 47.619 0.00 0.00 0.00 1.90
201 202 0.396435 TGTGCCTCGACCTGTTCATT 59.604 50.000 0.00 0.00 0.00 2.57
202 203 0.615331 ATGTGCCTCGACCTGTTCAT 59.385 50.000 0.00 0.00 0.00 2.57
203 204 0.037326 GATGTGCCTCGACCTGTTCA 60.037 55.000 0.00 0.00 0.00 3.18
204 205 0.247736 AGATGTGCCTCGACCTGTTC 59.752 55.000 0.00 0.00 0.00 3.18
205 206 0.247736 GAGATGTGCCTCGACCTGTT 59.752 55.000 0.00 0.00 0.00 3.16
206 207 1.608717 GGAGATGTGCCTCGACCTGT 61.609 60.000 0.00 0.00 34.08 4.00
207 208 1.142748 GGAGATGTGCCTCGACCTG 59.857 63.158 0.00 0.00 34.08 4.00
208 209 1.000993 AGGAGATGTGCCTCGACCT 59.999 57.895 0.00 0.00 34.08 3.85
209 210 1.439644 GAGGAGATGTGCCTCGACC 59.560 63.158 0.00 0.00 42.22 4.79
214 215 2.763448 GAGTACTTGAGGAGATGTGCCT 59.237 50.000 0.00 0.00 38.81 4.75
215 216 2.497675 TGAGTACTTGAGGAGATGTGCC 59.502 50.000 0.00 0.00 0.00 5.01
216 217 3.516615 GTGAGTACTTGAGGAGATGTGC 58.483 50.000 0.00 0.00 0.00 4.57
217 218 3.191581 ACGTGAGTACTTGAGGAGATGTG 59.808 47.826 0.00 0.00 46.88 3.21
218 219 3.422796 ACGTGAGTACTTGAGGAGATGT 58.577 45.455 0.00 0.00 46.88 3.06
233 234 9.529325 TCCTAACAGAAAATATAATCACGTGAG 57.471 33.333 24.41 7.88 0.00 3.51
236 237 9.193133 CGATCCTAACAGAAAATATAATCACGT 57.807 33.333 0.00 0.00 0.00 4.49
237 238 9.406828 TCGATCCTAACAGAAAATATAATCACG 57.593 33.333 0.00 0.00 0.00 4.35
244 245 9.462606 AAAAGGTTCGATCCTAACAGAAAATAT 57.537 29.630 15.38 0.00 36.74 1.28
245 246 8.857694 AAAAGGTTCGATCCTAACAGAAAATA 57.142 30.769 15.38 0.00 36.74 1.40
246 247 7.761038 AAAAGGTTCGATCCTAACAGAAAAT 57.239 32.000 15.38 0.00 36.74 1.82
247 248 7.576861 AAAAAGGTTCGATCCTAACAGAAAA 57.423 32.000 15.38 0.00 36.74 2.29
276 277 9.310449 ACCATAATAGATACGATCCTAACAGTT 57.690 33.333 0.00 0.00 0.00 3.16
277 278 8.880991 ACCATAATAGATACGATCCTAACAGT 57.119 34.615 0.00 0.00 0.00 3.55
313 314 8.982723 AGACCTACAATGTTTGATCTACTGTAT 58.017 33.333 0.00 0.00 0.00 2.29
314 315 8.362464 AGACCTACAATGTTTGATCTACTGTA 57.638 34.615 0.00 0.00 0.00 2.74
315 316 7.246171 AGACCTACAATGTTTGATCTACTGT 57.754 36.000 0.00 0.00 0.00 3.55
316 317 8.553459 AAAGACCTACAATGTTTGATCTACTG 57.447 34.615 0.00 0.00 0.00 2.74
326 327 9.908152 GCAATAGTTTAAAAGACCTACAATGTT 57.092 29.630 0.00 0.00 0.00 2.71
327 328 8.234546 CGCAATAGTTTAAAAGACCTACAATGT 58.765 33.333 0.00 0.00 0.00 2.71
328 329 8.234546 ACGCAATAGTTTAAAAGACCTACAATG 58.765 33.333 0.00 0.00 0.00 2.82
329 330 8.234546 CACGCAATAGTTTAAAAGACCTACAAT 58.765 33.333 0.00 0.00 0.00 2.71
330 331 7.441760 TCACGCAATAGTTTAAAAGACCTACAA 59.558 33.333 0.00 0.00 0.00 2.41
331 332 6.930164 TCACGCAATAGTTTAAAAGACCTACA 59.070 34.615 0.00 0.00 0.00 2.74
332 333 7.117379 AGTCACGCAATAGTTTAAAAGACCTAC 59.883 37.037 0.00 0.00 0.00 3.18
333 334 7.117236 CAGTCACGCAATAGTTTAAAAGACCTA 59.883 37.037 0.00 0.00 0.00 3.08
334 335 5.995897 AGTCACGCAATAGTTTAAAAGACCT 59.004 36.000 0.00 0.00 0.00 3.85
335 336 6.073440 TCAGTCACGCAATAGTTTAAAAGACC 60.073 38.462 0.00 0.00 0.00 3.85
336 337 6.884187 TCAGTCACGCAATAGTTTAAAAGAC 58.116 36.000 0.00 0.00 0.00 3.01
337 338 7.485418 TTCAGTCACGCAATAGTTTAAAAGA 57.515 32.000 0.00 0.00 0.00 2.52
338 339 8.629986 CAATTCAGTCACGCAATAGTTTAAAAG 58.370 33.333 0.00 0.00 0.00 2.27
339 340 8.346300 TCAATTCAGTCACGCAATAGTTTAAAA 58.654 29.630 0.00 0.00 0.00 1.52
340 341 7.866729 TCAATTCAGTCACGCAATAGTTTAAA 58.133 30.769 0.00 0.00 0.00 1.52
341 342 7.172532 ACTCAATTCAGTCACGCAATAGTTTAA 59.827 33.333 0.00 0.00 0.00 1.52
342 343 6.649141 ACTCAATTCAGTCACGCAATAGTTTA 59.351 34.615 0.00 0.00 0.00 2.01
343 344 5.470098 ACTCAATTCAGTCACGCAATAGTTT 59.530 36.000 0.00 0.00 0.00 2.66
344 345 4.997395 ACTCAATTCAGTCACGCAATAGTT 59.003 37.500 0.00 0.00 0.00 2.24
345 346 4.569943 ACTCAATTCAGTCACGCAATAGT 58.430 39.130 0.00 0.00 0.00 2.12
346 347 6.647212 TTACTCAATTCAGTCACGCAATAG 57.353 37.500 0.00 0.00 0.00 1.73
347 348 7.172532 AGTTTTACTCAATTCAGTCACGCAATA 59.827 33.333 0.00 0.00 0.00 1.90
348 349 5.940192 TTTACTCAATTCAGTCACGCAAT 57.060 34.783 0.00 0.00 0.00 3.56
349 350 5.295787 AGTTTTACTCAATTCAGTCACGCAA 59.704 36.000 0.00 0.00 0.00 4.85
350 351 4.814234 AGTTTTACTCAATTCAGTCACGCA 59.186 37.500 0.00 0.00 0.00 5.24
351 352 5.344207 AGTTTTACTCAATTCAGTCACGC 57.656 39.130 0.00 0.00 0.00 5.34
352 353 9.953825 GTATTAGTTTTACTCAATTCAGTCACG 57.046 33.333 0.00 0.00 0.00 4.35
368 369 8.211629 GGTGGAGATCATACCAGTATTAGTTTT 58.788 37.037 6.56 0.00 36.82 2.43
369 370 7.471539 CGGTGGAGATCATACCAGTATTAGTTT 60.472 40.741 11.89 0.00 36.82 2.66
370 371 6.015350 CGGTGGAGATCATACCAGTATTAGTT 60.015 42.308 11.89 0.00 36.82 2.24
371 372 5.477291 CGGTGGAGATCATACCAGTATTAGT 59.523 44.000 11.89 0.00 36.82 2.24
372 373 5.477291 ACGGTGGAGATCATACCAGTATTAG 59.523 44.000 11.89 0.00 36.82 1.73
373 374 5.391256 ACGGTGGAGATCATACCAGTATTA 58.609 41.667 11.89 0.00 36.82 0.98
374 375 4.223953 ACGGTGGAGATCATACCAGTATT 58.776 43.478 11.89 0.00 36.82 1.89
375 376 3.845860 ACGGTGGAGATCATACCAGTAT 58.154 45.455 11.89 0.00 36.82 2.12
376 377 3.308035 ACGGTGGAGATCATACCAGTA 57.692 47.619 11.89 0.00 36.82 2.74
377 378 2.160721 ACGGTGGAGATCATACCAGT 57.839 50.000 11.89 8.40 36.82 4.00
378 379 4.873746 ATAACGGTGGAGATCATACCAG 57.126 45.455 11.89 7.94 36.82 4.00
379 380 6.928348 ATTATAACGGTGGAGATCATACCA 57.072 37.500 11.89 7.73 34.10 3.25
380 381 7.119262 CCAAATTATAACGGTGGAGATCATACC 59.881 40.741 0.00 0.00 0.00 2.73
381 382 7.660208 ACCAAATTATAACGGTGGAGATCATAC 59.340 37.037 14.74 0.00 33.39 2.39
382 383 7.741785 ACCAAATTATAACGGTGGAGATCATA 58.258 34.615 14.74 0.00 33.39 2.15
383 384 6.601332 ACCAAATTATAACGGTGGAGATCAT 58.399 36.000 14.74 0.00 33.39 2.45
384 385 5.996644 ACCAAATTATAACGGTGGAGATCA 58.003 37.500 14.74 0.00 33.39 2.92
385 386 5.469084 GGACCAAATTATAACGGTGGAGATC 59.531 44.000 14.74 5.29 33.39 2.75
386 387 5.374071 GGACCAAATTATAACGGTGGAGAT 58.626 41.667 14.74 0.00 33.39 2.75
387 388 4.384427 GGGACCAAATTATAACGGTGGAGA 60.384 45.833 14.74 0.00 33.39 3.71
388 389 3.881089 GGGACCAAATTATAACGGTGGAG 59.119 47.826 14.74 0.00 33.39 3.86
389 390 3.266254 TGGGACCAAATTATAACGGTGGA 59.734 43.478 14.74 0.00 33.39 4.02
390 391 3.379057 GTGGGACCAAATTATAACGGTGG 59.621 47.826 7.59 8.14 35.39 4.61
391 392 3.064271 CGTGGGACCAAATTATAACGGTG 59.936 47.826 7.59 0.00 0.00 4.94
392 393 3.055240 TCGTGGGACCAAATTATAACGGT 60.055 43.478 3.33 3.33 0.00 4.83
393 394 3.533547 TCGTGGGACCAAATTATAACGG 58.466 45.455 0.00 0.00 0.00 4.44
394 395 5.548706 TTTCGTGGGACCAAATTATAACG 57.451 39.130 0.00 0.00 0.00 3.18
395 396 9.292846 GTTAATTTCGTGGGACCAAATTATAAC 57.707 33.333 7.80 4.18 33.87 1.89
396 397 8.182881 CGTTAATTTCGTGGGACCAAATTATAA 58.817 33.333 7.80 0.00 33.87 0.98
397 398 7.201714 CCGTTAATTTCGTGGGACCAAATTATA 60.202 37.037 7.80 0.31 33.87 0.98
398 399 6.404954 CCGTTAATTTCGTGGGACCAAATTAT 60.405 38.462 7.80 0.00 33.87 1.28
399 400 5.106237 CCGTTAATTTCGTGGGACCAAATTA 60.106 40.000 0.00 0.00 33.02 1.40
400 401 4.321378 CCGTTAATTTCGTGGGACCAAATT 60.321 41.667 0.00 0.00 34.75 1.82
401 402 3.191791 CCGTTAATTTCGTGGGACCAAAT 59.808 43.478 0.00 0.00 0.00 2.32
402 403 2.553172 CCGTTAATTTCGTGGGACCAAA 59.447 45.455 0.00 0.00 0.00 3.28
403 404 2.152830 CCGTTAATTTCGTGGGACCAA 58.847 47.619 0.00 0.00 0.00 3.67
404 405 1.810959 CCGTTAATTTCGTGGGACCA 58.189 50.000 0.00 0.00 0.00 4.02
405 406 0.448990 GCCGTTAATTTCGTGGGACC 59.551 55.000 0.00 0.00 0.00 4.46
406 407 1.395954 GAGCCGTTAATTTCGTGGGAC 59.604 52.381 0.00 0.00 0.00 4.46
407 408 1.729284 GAGCCGTTAATTTCGTGGGA 58.271 50.000 0.00 0.00 0.00 4.37
408 409 0.372334 CGAGCCGTTAATTTCGTGGG 59.628 55.000 0.00 0.00 0.00 4.61
409 410 1.073177 ACGAGCCGTTAATTTCGTGG 58.927 50.000 0.08 0.00 43.78 4.94
410 411 3.976468 TTACGAGCCGTTAATTTCGTG 57.024 42.857 10.12 0.79 44.90 4.35
411 412 4.988708 TTTTACGAGCCGTTAATTTCGT 57.011 36.364 5.57 5.96 46.63 3.85
412 413 5.671140 CAGATTTTACGAGCCGTTAATTTCG 59.329 40.000 5.57 0.00 41.54 3.46
413 414 6.768078 TCAGATTTTACGAGCCGTTAATTTC 58.232 36.000 5.57 4.47 41.54 2.17
414 415 6.730960 TCAGATTTTACGAGCCGTTAATTT 57.269 33.333 5.57 0.83 41.54 1.82
415 416 6.920569 ATCAGATTTTACGAGCCGTTAATT 57.079 33.333 5.57 0.71 41.54 1.40
416 417 6.920569 AATCAGATTTTACGAGCCGTTAAT 57.079 33.333 5.57 6.53 41.54 1.40
417 418 7.463119 CGTTAATCAGATTTTACGAGCCGTTAA 60.463 37.037 18.65 0.85 41.54 2.01
418 419 6.020440 CGTTAATCAGATTTTACGAGCCGTTA 60.020 38.462 18.65 0.00 41.54 3.18
419 420 5.220340 CGTTAATCAGATTTTACGAGCCGTT 60.220 40.000 18.65 0.00 41.54 4.44
420 421 4.266976 CGTTAATCAGATTTTACGAGCCGT 59.733 41.667 18.65 5.58 44.35 5.68
421 422 4.266976 ACGTTAATCAGATTTTACGAGCCG 59.733 41.667 25.40 10.81 34.94 5.52
422 423 5.490213 CACGTTAATCAGATTTTACGAGCC 58.510 41.667 25.40 0.40 34.94 4.70
423 424 5.490213 CCACGTTAATCAGATTTTACGAGC 58.510 41.667 25.40 3.12 34.94 5.03
424 425 5.808540 TCCCACGTTAATCAGATTTTACGAG 59.191 40.000 25.40 20.15 34.94 4.18
425 426 5.722263 TCCCACGTTAATCAGATTTTACGA 58.278 37.500 25.40 9.78 34.94 3.43
426 427 6.411630 TTCCCACGTTAATCAGATTTTACG 57.588 37.500 20.48 20.48 36.11 3.18
429 430 7.966204 CGTAAATTCCCACGTTAATCAGATTTT 59.034 33.333 0.00 0.00 33.56 1.82
430 431 7.414762 CCGTAAATTCCCACGTTAATCAGATTT 60.415 37.037 0.00 0.00 36.44 2.17
431 432 6.037830 CCGTAAATTCCCACGTTAATCAGATT 59.962 38.462 0.20 0.20 36.44 2.40
432 433 5.526111 CCGTAAATTCCCACGTTAATCAGAT 59.474 40.000 0.00 0.00 36.44 2.90
433 434 4.871557 CCGTAAATTCCCACGTTAATCAGA 59.128 41.667 0.00 0.00 36.44 3.27
434 435 4.034742 CCCGTAAATTCCCACGTTAATCAG 59.965 45.833 0.00 0.00 36.44 2.90
435 436 3.940221 CCCGTAAATTCCCACGTTAATCA 59.060 43.478 0.00 0.00 36.44 2.57
436 437 4.190772 TCCCGTAAATTCCCACGTTAATC 58.809 43.478 0.00 0.00 36.44 1.75
437 438 4.219264 TCCCGTAAATTCCCACGTTAAT 57.781 40.909 0.00 0.00 36.44 1.40
438 439 3.692257 TCCCGTAAATTCCCACGTTAA 57.308 42.857 0.00 0.00 36.44 2.01
439 440 3.007831 ACTTCCCGTAAATTCCCACGTTA 59.992 43.478 0.00 0.00 36.44 3.18
440 441 2.224597 ACTTCCCGTAAATTCCCACGTT 60.225 45.455 0.00 0.00 36.44 3.99
441 442 1.348696 ACTTCCCGTAAATTCCCACGT 59.651 47.619 6.49 0.00 36.44 4.49
442 443 2.004733 GACTTCCCGTAAATTCCCACG 58.995 52.381 1.41 1.41 37.89 4.94
443 444 3.062122 TGACTTCCCGTAAATTCCCAC 57.938 47.619 0.00 0.00 0.00 4.61
444 445 3.328343 TCTTGACTTCCCGTAAATTCCCA 59.672 43.478 0.00 0.00 0.00 4.37
445 446 3.946606 TCTTGACTTCCCGTAAATTCCC 58.053 45.455 0.00 0.00 0.00 3.97
446 447 6.510879 AATTCTTGACTTCCCGTAAATTCC 57.489 37.500 0.00 0.00 0.00 3.01
447 448 8.265165 ACTAATTCTTGACTTCCCGTAAATTC 57.735 34.615 0.00 0.00 0.00 2.17
448 449 9.901172 ATACTAATTCTTGACTTCCCGTAAATT 57.099 29.630 0.00 0.00 0.00 1.82
451 452 8.636213 CCTATACTAATTCTTGACTTCCCGTAA 58.364 37.037 0.00 0.00 0.00 3.18
452 453 7.781693 ACCTATACTAATTCTTGACTTCCCGTA 59.218 37.037 0.00 0.00 0.00 4.02
453 454 6.610425 ACCTATACTAATTCTTGACTTCCCGT 59.390 38.462 0.00 0.00 0.00 5.28
454 455 7.052142 ACCTATACTAATTCTTGACTTCCCG 57.948 40.000 0.00 0.00 0.00 5.14
455 456 8.586744 CCTACCTATACTAATTCTTGACTTCCC 58.413 40.741 0.00 0.00 0.00 3.97
456 457 9.145442 ACCTACCTATACTAATTCTTGACTTCC 57.855 37.037 0.00 0.00 0.00 3.46
527 528 7.704472 GCATACACATTATTCTAGGCTAGCTAG 59.296 40.741 16.84 16.84 0.00 3.42
528 529 7.397476 AGCATACACATTATTCTAGGCTAGCTA 59.603 37.037 16.85 7.58 0.00 3.32
529 530 6.212388 AGCATACACATTATTCTAGGCTAGCT 59.788 38.462 16.85 8.91 0.00 3.32
530 531 6.402222 AGCATACACATTATTCTAGGCTAGC 58.598 40.000 16.85 6.04 0.00 3.42
531 532 8.744652 AGTAGCATACACATTATTCTAGGCTAG 58.255 37.037 15.56 15.56 46.26 3.42
532 533 8.651589 AGTAGCATACACATTATTCTAGGCTA 57.348 34.615 0.00 0.00 46.26 3.93
533 534 7.453126 AGAGTAGCATACACATTATTCTAGGCT 59.547 37.037 0.00 0.00 46.26 4.58
534 535 7.607250 AGAGTAGCATACACATTATTCTAGGC 58.393 38.462 0.00 0.00 46.26 3.93
545 546 9.635520 GAAGTAACTTTAAGAGTAGCATACACA 57.364 33.333 0.00 0.00 46.26 3.72
546 547 9.635520 TGAAGTAACTTTAAGAGTAGCATACAC 57.364 33.333 0.00 0.00 46.26 2.90
587 588 2.127271 TGACCGAATGTACCCGTCTA 57.873 50.000 0.00 0.00 0.00 2.59
703 705 3.501950 TCGATGATCGAGATTAATGCCG 58.498 45.455 14.25 0.00 44.82 5.69
751 753 1.214589 CAGGCTAACTGTACCGCGT 59.785 57.895 4.92 0.00 42.42 6.01
804 818 2.521958 CTACAGGACGGGGGTTGCAG 62.522 65.000 0.00 0.00 0.00 4.41
857 871 3.756963 GCCGGCCTTTATAATTAAGGAGG 59.243 47.826 18.11 11.18 44.01 4.30
858 872 3.756963 GGCCGGCCTTTATAATTAAGGAG 59.243 47.826 38.76 3.04 44.01 3.69
859 873 3.758425 GGCCGGCCTTTATAATTAAGGA 58.242 45.455 38.76 0.00 44.01 3.36
860 874 2.486592 CGGCCGGCCTTTATAATTAAGG 59.513 50.000 41.01 18.43 44.09 2.69
863 877 1.698532 TCCGGCCGGCCTTTATAATTA 59.301 47.619 41.01 15.09 34.68 1.40
864 878 0.475044 TCCGGCCGGCCTTTATAATT 59.525 50.000 41.01 0.00 34.68 1.40
865 879 0.036306 CTCCGGCCGGCCTTTATAAT 59.964 55.000 41.01 0.00 34.68 1.28
904 920 5.399113 AGTTAGAGAAAGAGGAGTGGTCTT 58.601 41.667 0.00 0.00 35.71 3.01
933 949 1.409241 GGCAATCTCTCAGCCCAATCA 60.409 52.381 0.00 0.00 42.58 2.57
944 961 8.763984 AGATGAAGAATTATTTGGCAATCTCT 57.236 30.769 0.00 0.00 0.00 3.10
945 962 9.460906 GAAGATGAAGAATTATTTGGCAATCTC 57.539 33.333 0.00 0.00 0.00 2.75
992 1022 1.279271 CCGGGAATCCCATTAGCTAGG 59.721 57.143 19.81 4.62 45.83 3.02
1312 1351 3.122323 GCCGTGGAATTCGCCGAA 61.122 61.111 14.69 0.33 0.00 4.30
1440 1479 3.680920 GAGGAGGAAGGGCGGGAGA 62.681 68.421 0.00 0.00 0.00 3.71
1505 1560 0.592247 GCCGGATTATGCGCAAACAG 60.592 55.000 17.11 6.91 0.00 3.16
1623 1678 4.195334 GACCGCCATGGCCTCCAT 62.195 66.667 30.79 11.72 46.37 3.41
1640 1695 6.690098 CCGATCAGAAAATATTTCAACAGCTG 59.310 38.462 13.48 13.48 0.00 4.24
1706 1780 1.425448 GGAAGTAATCCCCATCCCTGG 59.575 57.143 0.00 0.00 43.00 4.45
1734 1808 4.394729 TGAAATCCAAACTAACCGAAGCT 58.605 39.130 0.00 0.00 0.00 3.74
1735 1809 4.759516 TGAAATCCAAACTAACCGAAGC 57.240 40.909 0.00 0.00 0.00 3.86
1756 1830 7.001674 TGTGTGTGTAGGGATTTTACTTGAAT 58.998 34.615 0.00 0.00 0.00 2.57
1762 1836 4.391155 TGGTGTGTGTGTAGGGATTTTAC 58.609 43.478 0.00 0.00 0.00 2.01
1771 1845 5.147330 TCTATTTCCTGGTGTGTGTGTAG 57.853 43.478 0.00 0.00 0.00 2.74
1772 1846 5.755409 ATCTATTTCCTGGTGTGTGTGTA 57.245 39.130 0.00 0.00 0.00 2.90
1870 1964 8.910351 AGCAAGACAGAAAGTTAGACTAAAAT 57.090 30.769 0.00 0.00 0.00 1.82
1911 2006 7.277098 CAGCATAAAAGATGAAAAAGGACATGG 59.723 37.037 0.00 0.00 0.00 3.66
1918 2013 7.811236 TGAGAAGCAGCATAAAAGATGAAAAAG 59.189 33.333 0.00 0.00 0.00 2.27
1934 2064 1.075659 AAACCCCCTGAGAAGCAGC 59.924 57.895 0.00 0.00 43.50 5.25
2059 2189 9.987272 CCATATCATCAGTGTTTAGACATTAGA 57.013 33.333 0.00 0.00 38.23 2.10
2064 2194 6.316140 GCAACCATATCATCAGTGTTTAGACA 59.684 38.462 0.00 0.00 0.00 3.41
2117 2517 8.071368 GGACGAATTATTGTACACACAAGAAAA 58.929 33.333 0.00 0.00 45.94 2.29
2118 2518 7.226918 TGGACGAATTATTGTACACACAAGAAA 59.773 33.333 0.00 0.00 45.94 2.52
2162 2562 4.141274 CCCTTTCAAAATGAAAACCCCCTT 60.141 41.667 6.93 0.00 44.69 3.95
2233 2633 8.658609 TGTAAGCATACGGTAACAAAGTTATTC 58.341 33.333 0.00 0.00 34.60 1.75
2243 2643 6.897259 TTTGAGATGTAAGCATACGGTAAC 57.103 37.500 0.00 0.00 35.07 2.50
2244 2644 7.908827 TTTTTGAGATGTAAGCATACGGTAA 57.091 32.000 0.00 0.00 35.07 2.85
2268 2668 8.716909 CACACATTTTCAGGTAACAAAGTTTTT 58.283 29.630 0.00 0.00 41.41 1.94
2269 2669 7.333174 CCACACATTTTCAGGTAACAAAGTTTT 59.667 33.333 0.00 0.00 41.41 2.43
2270 2670 6.816140 CCACACATTTTCAGGTAACAAAGTTT 59.184 34.615 0.00 0.00 41.41 2.66
2271 2671 6.153680 TCCACACATTTTCAGGTAACAAAGTT 59.846 34.615 0.00 0.00 41.41 2.66
2272 2672 5.654650 TCCACACATTTTCAGGTAACAAAGT 59.345 36.000 0.00 0.00 41.41 2.66
2273 2673 5.977129 GTCCACACATTTTCAGGTAACAAAG 59.023 40.000 0.00 0.00 41.41 2.77
2274 2674 5.163499 GGTCCACACATTTTCAGGTAACAAA 60.163 40.000 0.00 0.00 41.41 2.83
2275 2675 4.339814 GGTCCACACATTTTCAGGTAACAA 59.660 41.667 0.00 0.00 41.41 2.83
2276 2676 3.886505 GGTCCACACATTTTCAGGTAACA 59.113 43.478 0.00 0.00 41.41 2.41
2282 2682 4.654091 AGTTTGGTCCACACATTTTCAG 57.346 40.909 10.76 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.