Multiple sequence alignment - TraesCS7D01G022800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G022800
chr7D
100.000
3985
0
0
1
3985
10713779
10717763
0.000000e+00
7360
1
TraesCS7D01G022800
chr7D
81.818
484
57
14
1588
2068
63071052
63071507
1.050000e-100
377
2
TraesCS7D01G022800
chr7A
91.688
3080
153
43
1
3007
9753559
9756608
0.000000e+00
4174
3
TraesCS7D01G022800
chr7A
88.778
900
52
19
3090
3985
9756714
9757568
0.000000e+00
1057
4
TraesCS7D01G022800
chr7A
81.237
485
59
17
1588
2068
639220811
639221267
2.930000e-96
363
5
TraesCS7D01G022800
chr4A
92.033
1343
67
16
699
2018
728087856
728086531
0.000000e+00
1851
6
TraesCS7D01G022800
chr4A
90.275
1018
40
30
2010
2998
728086333
728085346
0.000000e+00
1277
7
TraesCS7D01G022800
chr4A
96.302
676
22
1
1
673
728088529
728087854
0.000000e+00
1107
8
TraesCS7D01G022800
chr4A
88.375
886
55
25
3129
3985
728085212
728084346
0.000000e+00
1022
9
TraesCS7D01G022800
chr6D
82.526
475
52
14
1597
2068
435556737
435557183
4.830000e-104
388
10
TraesCS7D01G022800
chr4D
81.799
478
56
20
1597
2071
452006859
452006410
4.860000e-99
372
11
TraesCS7D01G022800
chr3A
81.875
480
52
18
1597
2071
555171888
555171439
4.860000e-99
372
12
TraesCS7D01G022800
chr2B
84.881
377
36
12
1673
2035
56001853
56002222
1.050000e-95
361
13
TraesCS7D01G022800
chr2B
92.810
153
10
1
2529
2680
510167747
510167595
1.860000e-53
220
14
TraesCS7D01G022800
chr1D
81.532
444
51
18
1588
2028
393065196
393065611
1.770000e-88
337
15
TraesCS7D01G022800
chr1D
80.603
464
57
20
1588
2047
477539023
477539457
1.070000e-85
327
16
TraesCS7D01G022800
chr1D
80.388
464
58
22
1588
2047
392993546
392993980
4.970000e-84
322
17
TraesCS7D01G022800
chr1D
78.744
414
57
13
1624
2034
476038506
476038121
8.550000e-62
248
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G022800
chr7D
10713779
10717763
3984
False
7360.00
7360
100.00000
1
3985
1
chr7D.!!$F1
3984
1
TraesCS7D01G022800
chr7A
9753559
9757568
4009
False
2615.50
4174
90.23300
1
3985
2
chr7A.!!$F2
3984
2
TraesCS7D01G022800
chr4A
728084346
728088529
4183
True
1314.25
1851
91.74625
1
3985
4
chr4A.!!$R1
3984
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
773
788
1.135699
GGTGCGCAATTTGCTCGATG
61.136
55.0
14.00
4.53
42.25
3.84
F
1313
1345
0.304098
GTCGCTGATCATGAGCTTGC
59.696
55.0
12.92
14.66
34.03
4.01
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2452
2739
0.179037
TCGACGTATGGACCGGATCT
60.179
55.0
9.46
0.00
0.00
2.75
R
3257
3625
0.034059
AAGACTGACAGGCTGAACGG
59.966
55.0
23.66
20.13
30.77
4.44
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
97
98
5.579511
GCAAATCAAATCATGAGGACCAAAG
59.420
40.000
0.09
0.00
42.53
2.77
117
118
6.127647
CCAAAGCTATGCAATTCTTAGGTTGA
60.128
38.462
8.94
0.00
40.21
3.18
483
494
7.060633
CGATTTGATTTGGACTTAAAGAAACGG
59.939
37.037
0.00
0.00
0.00
4.44
521
532
1.637553
AGACAGTGGGCATTGGATCTT
59.362
47.619
0.00
0.00
0.00
2.40
522
533
2.019984
GACAGTGGGCATTGGATCTTC
58.980
52.381
0.00
0.00
0.00
2.87
543
554
2.795329
GAACTTTCTCATGGGAAGGCA
58.205
47.619
16.85
0.00
0.00
4.75
572
583
5.427481
CCTAAATTGGTCCTTGTAGGTCCTA
59.573
44.000
9.80
0.00
42.97
2.94
605
617
6.286758
TCATGCCAAAATTTTCAGTGCTAAA
58.713
32.000
0.00
0.00
0.00
1.85
716
731
4.389374
CAGAGCCTTACTTTGTTCCTTCA
58.611
43.478
0.00
0.00
0.00
3.02
734
749
4.083110
CCTTCACACTGTGCAATAAAGAGG
60.083
45.833
7.90
1.10
32.98
3.69
752
767
1.415659
AGGCAGCTATTCGATTCAGCT
59.584
47.619
9.44
9.44
46.36
4.24
773
788
1.135699
GGTGCGCAATTTGCTCGATG
61.136
55.000
14.00
4.53
42.25
3.84
853
868
1.678728
CGGGCCATGTTTTAGCTCTCA
60.679
52.381
4.39
0.00
0.00
3.27
954
969
5.838521
ACCCCTATAAAAACCATGGCATAAG
59.161
40.000
13.04
0.00
0.00
1.73
1008
1034
1.464997
GACGGACTGAAAATGTGGAGC
59.535
52.381
0.00
0.00
0.00
4.70
1235
1261
3.986277
AGCAAAGGCAAAAACAGATCAG
58.014
40.909
0.00
0.00
44.61
2.90
1307
1339
3.317603
TTTCACTGTCGCTGATCATGA
57.682
42.857
0.00
0.00
0.00
3.07
1308
1340
2.573941
TCACTGTCGCTGATCATGAG
57.426
50.000
0.09
0.00
0.00
2.90
1310
1342
0.822811
ACTGTCGCTGATCATGAGCT
59.177
50.000
12.92
0.00
34.03
4.09
1313
1345
0.304098
GTCGCTGATCATGAGCTTGC
59.696
55.000
12.92
14.66
34.03
4.01
1314
1346
1.149964
TCGCTGATCATGAGCTTGCG
61.150
55.000
30.66
30.66
39.85
4.85
1381
1414
5.640189
AAGATCACTGCTGAAATCTTTGG
57.360
39.130
14.59
0.00
25.92
3.28
1382
1415
4.914983
AGATCACTGCTGAAATCTTTGGA
58.085
39.130
0.00
0.00
0.00
3.53
1394
1427
5.945784
TGAAATCTTTGGATACCTGTTCCTG
59.054
40.000
0.00
0.00
34.17
3.86
1463
1496
1.007038
GGAGTACACGACCGCAACA
60.007
57.895
0.00
0.00
0.00
3.33
1586
1619
5.769662
AGTCATTTTCTTACATGCAGGTCAA
59.230
36.000
7.56
0.15
0.00
3.18
1842
1904
4.679662
CTTTACGGACCACATCGATAAGT
58.320
43.478
0.00
0.00
0.00
2.24
1844
1906
2.097036
ACGGACCACATCGATAAGTGA
58.903
47.619
15.44
0.00
37.97
3.41
1845
1907
2.693591
ACGGACCACATCGATAAGTGAT
59.306
45.455
15.44
0.05
37.97
3.06
1846
1908
3.887110
ACGGACCACATCGATAAGTGATA
59.113
43.478
15.44
0.00
37.97
2.15
1847
1909
4.340097
ACGGACCACATCGATAAGTGATAA
59.660
41.667
15.44
0.00
37.97
1.75
1918
1982
8.749499
GTGAATCAGAATCAAACACTTTTTCAG
58.251
33.333
0.00
0.00
0.00
3.02
1940
2008
2.233271
AGCTAAGTTGCATTGCACACT
58.767
42.857
11.66
14.42
38.71
3.55
1947
2015
1.900245
TGCATTGCACACTCATGAGT
58.100
45.000
22.89
22.89
36.29
3.41
2138
2413
2.852075
GTCCCTCACCCACCACCA
60.852
66.667
0.00
0.00
0.00
4.17
2141
2416
2.854032
CCTCACCCACCACCACCT
60.854
66.667
0.00
0.00
0.00
4.00
2447
2734
1.972752
TCTACTGCGTACGTGGGCA
60.973
57.895
17.90
13.60
37.63
5.36
2463
2750
3.822192
CACGCGAGATCCGGTCCA
61.822
66.667
15.93
0.00
39.04
4.02
2464
2751
2.833582
ACGCGAGATCCGGTCCAT
60.834
61.111
15.93
0.00
39.04
3.41
2479
2779
1.948145
GTCCATACGTCGACTCCTGAT
59.052
52.381
14.70
0.00
0.00
2.90
2481
2781
1.001268
CCATACGTCGACTCCTGATGG
60.001
57.143
14.70
13.77
0.00
3.51
2491
2791
4.709886
TCGACTCCTGATGGTTAAAGATGA
59.290
41.667
0.00
0.00
34.23
2.92
2508
2808
9.723601
TTAAAGATGAAAGATTTTGATTTGGGG
57.276
29.630
0.00
0.00
0.00
4.96
2509
2809
7.557875
AAGATGAAAGATTTTGATTTGGGGA
57.442
32.000
0.00
0.00
0.00
4.81
2510
2810
7.744678
AGATGAAAGATTTTGATTTGGGGAT
57.255
32.000
0.00
0.00
0.00
3.85
2511
2811
8.154420
AGATGAAAGATTTTGATTTGGGGATT
57.846
30.769
0.00
0.00
0.00
3.01
2743
3047
5.447818
CCACTCTCTGAACACTGTTGTTTTC
60.448
44.000
0.00
0.00
46.43
2.29
2812
3126
9.148104
GAATTGTCGATTGATCTGATGATGATA
57.852
33.333
0.00
0.00
32.19
2.15
2813
3127
9.668497
AATTGTCGATTGATCTGATGATGATAT
57.332
29.630
0.00
0.00
32.19
1.63
2814
3128
8.475331
TTGTCGATTGATCTGATGATGATATG
57.525
34.615
0.00
0.00
32.19
1.78
2815
3129
7.039882
TGTCGATTGATCTGATGATGATATGG
58.960
38.462
0.00
0.00
32.19
2.74
2972
3292
2.666190
GACGTGGCAGAGCAGCAA
60.666
61.111
0.00
0.00
35.83
3.91
2978
3298
2.107903
GGCAGAGCAGCAAGAGAGC
61.108
63.158
0.00
0.00
35.83
4.09
2997
3349
1.789464
GCGTGTGACTCTGAACTGAAG
59.211
52.381
0.00
0.00
0.00
3.02
3014
3368
9.046296
TGAACTGAAGTTTTGAACTAGAGAATC
57.954
33.333
0.00
0.00
41.91
2.52
3033
3387
8.364129
GAGAATCTGATGGACTGAAACTAATC
57.636
38.462
0.00
0.00
0.00
1.75
3035
3389
8.324306
AGAATCTGATGGACTGAAACTAATCAA
58.676
33.333
0.00
0.00
0.00
2.57
3040
3403
7.676004
TGATGGACTGAAACTAATCAACACTA
58.324
34.615
0.00
0.00
0.00
2.74
3067
3430
6.925610
CGTAGGAAATTTGGATGAGAATGA
57.074
37.500
0.00
0.00
0.00
2.57
3068
3431
6.952743
CGTAGGAAATTTGGATGAGAATGAG
58.047
40.000
0.00
0.00
0.00
2.90
3069
3432
6.763135
CGTAGGAAATTTGGATGAGAATGAGA
59.237
38.462
0.00
0.00
0.00
3.27
3070
3433
7.443575
CGTAGGAAATTTGGATGAGAATGAGAT
59.556
37.037
0.00
0.00
0.00
2.75
3071
3434
7.584122
AGGAAATTTGGATGAGAATGAGATG
57.416
36.000
0.00
0.00
0.00
2.90
3072
3435
7.124052
AGGAAATTTGGATGAGAATGAGATGT
58.876
34.615
0.00
0.00
0.00
3.06
3073
3436
7.618512
AGGAAATTTGGATGAGAATGAGATGTT
59.381
33.333
0.00
0.00
0.00
2.71
3074
3437
7.705325
GGAAATTTGGATGAGAATGAGATGTTG
59.295
37.037
0.00
0.00
0.00
3.33
3075
3438
7.713734
AATTTGGATGAGAATGAGATGTTGT
57.286
32.000
0.00
0.00
0.00
3.32
3076
3439
6.505044
TTTGGATGAGAATGAGATGTTGTG
57.495
37.500
0.00
0.00
0.00
3.33
3077
3440
5.425196
TGGATGAGAATGAGATGTTGTGA
57.575
39.130
0.00
0.00
0.00
3.58
3078
3441
5.997843
TGGATGAGAATGAGATGTTGTGAT
58.002
37.500
0.00
0.00
0.00
3.06
3079
3442
5.820947
TGGATGAGAATGAGATGTTGTGATG
59.179
40.000
0.00
0.00
0.00
3.07
3080
3443
5.821470
GGATGAGAATGAGATGTTGTGATGT
59.179
40.000
0.00
0.00
0.00
3.06
3081
3444
6.318144
GGATGAGAATGAGATGTTGTGATGTT
59.682
38.462
0.00
0.00
0.00
2.71
3082
3445
6.490566
TGAGAATGAGATGTTGTGATGTTG
57.509
37.500
0.00
0.00
0.00
3.33
3083
3446
5.999600
TGAGAATGAGATGTTGTGATGTTGT
59.000
36.000
0.00
0.00
0.00
3.32
3084
3447
6.072893
TGAGAATGAGATGTTGTGATGTTGTG
60.073
38.462
0.00
0.00
0.00
3.33
3085
3448
5.182570
AGAATGAGATGTTGTGATGTTGTGG
59.817
40.000
0.00
0.00
0.00
4.17
3086
3449
2.553602
TGAGATGTTGTGATGTTGTGGC
59.446
45.455
0.00
0.00
0.00
5.01
3087
3450
1.888512
AGATGTTGTGATGTTGTGGCC
59.111
47.619
0.00
0.00
0.00
5.36
3088
3451
1.612950
GATGTTGTGATGTTGTGGCCA
59.387
47.619
0.00
0.00
0.00
5.36
3097
3460
3.008923
TGATGTTGTGGCCAGTGATCTTA
59.991
43.478
5.11
0.00
0.00
2.10
3106
3469
4.019411
TGGCCAGTGATCTTAACATGAGAA
60.019
41.667
0.00
0.00
0.00
2.87
3129
3492
2.433604
GAGATGCTCTGGTGAAGATGGA
59.566
50.000
0.00
0.00
33.29
3.41
3150
3513
7.186570
TGGAGATGAACTATGAGATGTTGAA
57.813
36.000
0.00
0.00
0.00
2.69
3162
3525
4.939439
TGAGATGTTGAATGATGGTGTCAG
59.061
41.667
0.00
0.00
40.92
3.51
3163
3526
5.169992
AGATGTTGAATGATGGTGTCAGA
57.830
39.130
0.00
0.00
40.92
3.27
3164
3527
5.752650
AGATGTTGAATGATGGTGTCAGAT
58.247
37.500
0.00
0.00
40.92
2.90
3165
3528
5.821470
AGATGTTGAATGATGGTGTCAGATC
59.179
40.000
0.00
0.00
40.92
2.75
3196
3562
1.801242
TAGGATCCCTGATTTGGCGA
58.199
50.000
8.55
0.00
34.61
5.54
3197
3563
1.143813
AGGATCCCTGATTTGGCGAT
58.856
50.000
8.55
0.00
29.57
4.58
3203
3571
2.503765
TCCCTGATTTGGCGATTCACTA
59.496
45.455
0.00
0.00
0.00
2.74
3225
3593
0.665068
TGTCGTTCGTTCATGTCCGG
60.665
55.000
0.00
0.00
0.00
5.14
3249
3617
1.951130
CAATGGTCGATCTCCGGCG
60.951
63.158
0.00
0.00
45.31
6.46
3250
3618
2.125326
AATGGTCGATCTCCGGCGA
61.125
57.895
9.30
0.00
45.31
5.54
3252
3620
4.632458
GGTCGATCTCCGGCGAGC
62.632
72.222
9.30
14.06
45.31
5.03
3253
3621
3.587933
GTCGATCTCCGGCGAGCT
61.588
66.667
9.30
0.00
37.18
4.09
3254
3622
3.586961
TCGATCTCCGGCGAGCTG
61.587
66.667
9.30
1.86
39.14
4.24
3255
3623
3.586961
CGATCTCCGGCGAGCTGA
61.587
66.667
9.30
0.53
35.94
4.26
3256
3624
2.334653
GATCTCCGGCGAGCTGAG
59.665
66.667
9.30
6.50
35.94
3.35
3257
3625
3.839642
GATCTCCGGCGAGCTGAGC
62.840
68.421
9.30
0.00
35.94
4.26
3263
3631
4.742201
GGCGAGCTGAGCCGTTCA
62.742
66.667
13.32
0.00
45.58
3.18
3269
3637
2.345244
CTGAGCCGTTCAGCCTGT
59.655
61.111
0.00
0.00
46.30
4.00
3270
3638
1.739562
CTGAGCCGTTCAGCCTGTC
60.740
63.158
0.00
0.00
46.30
3.51
3271
3639
2.343758
GAGCCGTTCAGCCTGTCA
59.656
61.111
0.00
0.00
0.00
3.58
3272
3640
1.739562
GAGCCGTTCAGCCTGTCAG
60.740
63.158
0.00
0.00
0.00
3.51
3273
3641
2.031163
GCCGTTCAGCCTGTCAGT
59.969
61.111
0.00
0.00
0.00
3.41
3274
3642
2.029844
GCCGTTCAGCCTGTCAGTC
61.030
63.158
0.00
0.00
0.00
3.51
3275
3643
1.668294
CCGTTCAGCCTGTCAGTCT
59.332
57.895
0.00
0.00
0.00
3.24
3276
3644
0.034059
CCGTTCAGCCTGTCAGTCTT
59.966
55.000
0.00
0.00
0.00
3.01
3316
3691
2.990479
GTCCTCCATTGACGGGCT
59.010
61.111
0.00
0.00
0.00
5.19
3317
3692
1.450312
GTCCTCCATTGACGGGCTG
60.450
63.158
0.00
0.00
0.00
4.85
3355
3738
3.610114
GCTCATAAATAACCATGGCGCAG
60.610
47.826
13.04
0.00
0.00
5.18
3391
3774
0.387878
GATCGAGGTAGCATGGCGAG
60.388
60.000
0.00
0.00
34.25
5.03
3393
3776
2.490148
CGAGGTAGCATGGCGAGGA
61.490
63.158
0.00
0.00
0.00
3.71
3431
3814
4.094646
ATCACGTCCATGGCGGCA
62.095
61.111
25.35
16.34
33.14
5.69
3432
3815
4.758251
TCACGTCCATGGCGGCAG
62.758
66.667
25.35
17.13
33.14
4.85
3892
4281
3.003763
GTGGAAGGGCGAGGAGGT
61.004
66.667
0.00
0.00
0.00
3.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
97
98
7.814587
AGTTTTTCAACCTAAGAATTGCATAGC
59.185
33.333
0.00
0.00
32.70
2.97
385
396
4.336532
ACAAAAATCGTGCGGAGAATAC
57.663
40.909
0.00
0.00
0.00
1.89
483
494
5.238214
ACTGTCTCTTCTTTGATGAGCAAAC
59.762
40.000
0.00
0.00
41.37
2.93
521
532
2.615493
GCCTTCCCATGAGAAAGTTCGA
60.615
50.000
0.00
0.00
0.00
3.71
522
533
1.740025
GCCTTCCCATGAGAAAGTTCG
59.260
52.381
0.00
0.00
0.00
3.95
543
554
4.692523
ACAAGGACCAATTTAGGGGAAT
57.307
40.909
0.00
0.00
0.00
3.01
557
568
3.593096
CCGTTTTAGGACCTACAAGGAC
58.407
50.000
17.73
5.62
37.67
3.85
716
731
2.816087
CTGCCTCTTTATTGCACAGTGT
59.184
45.455
1.61
0.00
0.00
3.55
773
788
5.121454
TGAATAATTGTGGAAAATTTGCCGC
59.879
36.000
20.35
20.35
32.16
6.53
853
868
0.802994
TCGTTTTCGCACACGTGACT
60.803
50.000
25.01
0.00
43.73
3.41
893
908
3.648528
GGAAAATGGCATCCGAAGC
57.351
52.632
0.00
0.00
0.00
3.86
898
913
0.395724
AGGTCCGGAAAATGGCATCC
60.396
55.000
5.23
0.00
0.00
3.51
954
969
4.801891
TCTGATGAGCAATTTGTTTCTGC
58.198
39.130
0.00
0.00
36.29
4.26
969
984
2.295629
GTCTGCCTCGATGATCTGATGA
59.704
50.000
0.00
0.00
0.00
2.92
1235
1261
2.805845
CAGCTGCTTTTATCACCATGC
58.194
47.619
0.00
0.00
0.00
4.06
1394
1427
2.506472
GGGCCGAGGATTCCACTC
59.494
66.667
5.29
0.00
0.00
3.51
1463
1496
1.210155
GCCGAAAGTCGCAGCAAAT
59.790
52.632
0.00
0.00
38.82
2.32
1586
1619
8.267894
ACATAGTAGGATATGAAACTTTGCACT
58.732
33.333
0.00
0.00
36.76
4.40
1691
1751
1.963515
GGGTCTTGGTGCATTTCAAGT
59.036
47.619
19.58
0.00
40.67
3.16
1746
1808
9.696917
GTGGTAGATTTGATGAAAACAGATTTT
57.303
29.630
0.00
0.00
40.83
1.82
1769
1831
7.412853
GTTCAGTTCAAGATGCTATTATGTGG
58.587
38.462
0.00
0.00
0.00
4.17
1888
1952
6.263516
AGTGTTTGATTCTGATTCACATGG
57.736
37.500
0.00
0.00
0.00
3.66
1918
1982
2.982470
GTGTGCAATGCAACTTAGCTTC
59.018
45.455
10.44
0.00
41.47
3.86
1994
2062
8.761689
ACCTAGCACAAATTATGGATGAAATTT
58.238
29.630
0.00
0.00
36.08
1.82
2138
2413
2.930562
GAGGCAGGTGGTGGAGGT
60.931
66.667
0.00
0.00
0.00
3.85
2141
2416
4.954118
ACGGAGGCAGGTGGTGGA
62.954
66.667
0.00
0.00
0.00
4.02
2177
2464
4.704103
TCCGGTGCTGCTCCTCCT
62.704
66.667
17.64
0.00
0.00
3.69
2178
2465
4.154347
CTCCGGTGCTGCTCCTCC
62.154
72.222
17.64
6.46
0.00
4.30
2447
2734
1.527611
TATGGACCGGATCTCGCGT
60.528
57.895
9.46
0.00
37.59
6.01
2450
2737
0.237761
GACGTATGGACCGGATCTCG
59.762
60.000
9.46
7.70
38.88
4.04
2451
2738
0.237761
CGACGTATGGACCGGATCTC
59.762
60.000
9.46
0.00
0.00
2.75
2452
2739
0.179037
TCGACGTATGGACCGGATCT
60.179
55.000
9.46
0.00
0.00
2.75
2459
2746
1.376543
TCAGGAGTCGACGTATGGAC
58.623
55.000
10.46
5.91
33.94
4.02
2460
2747
1.947456
CATCAGGAGTCGACGTATGGA
59.053
52.381
10.46
6.20
0.00
3.41
2461
2748
1.001268
CCATCAGGAGTCGACGTATGG
60.001
57.143
10.46
14.82
36.89
2.74
2462
2749
1.676529
ACCATCAGGAGTCGACGTATG
59.323
52.381
10.46
10.02
38.69
2.39
2463
2750
2.054232
ACCATCAGGAGTCGACGTAT
57.946
50.000
10.46
0.00
38.69
3.06
2464
2751
1.830279
AACCATCAGGAGTCGACGTA
58.170
50.000
10.46
0.00
38.69
3.57
2491
2791
9.016438
CAAATCAATCCCCAAATCAAAATCTTT
57.984
29.630
0.00
0.00
0.00
2.52
2504
2804
5.514484
CCAAATCCAAACAAATCAATCCCCA
60.514
40.000
0.00
0.00
0.00
4.96
2507
2807
7.926674
AATCCAAATCCAAACAAATCAATCC
57.073
32.000
0.00
0.00
0.00
3.01
2508
2808
8.238631
CCAAATCCAAATCCAAACAAATCAATC
58.761
33.333
0.00
0.00
0.00
2.67
2509
2809
7.309316
GCCAAATCCAAATCCAAACAAATCAAT
60.309
33.333
0.00
0.00
0.00
2.57
2510
2810
6.016443
GCCAAATCCAAATCCAAACAAATCAA
60.016
34.615
0.00
0.00
0.00
2.57
2511
2811
5.472820
GCCAAATCCAAATCCAAACAAATCA
59.527
36.000
0.00
0.00
0.00
2.57
2784
3098
6.145048
CATCATCAGATCAATCGACAATTCGA
59.855
38.462
0.00
0.00
45.06
3.71
2812
3126
2.336088
GCACGCTGCAAACACCAT
59.664
55.556
0.00
0.00
44.26
3.55
2972
3292
1.268352
GTTCAGAGTCACACGCTCTCT
59.732
52.381
0.00
0.00
40.97
3.10
2978
3298
3.085443
ACTTCAGTTCAGAGTCACACG
57.915
47.619
0.00
0.00
0.00
4.49
2997
3349
7.821846
AGTCCATCAGATTCTCTAGTTCAAAAC
59.178
37.037
0.00
0.00
0.00
2.43
3014
3368
6.652481
AGTGTTGATTAGTTTCAGTCCATCAG
59.348
38.462
0.00
0.00
0.00
2.90
3020
3374
7.758528
ACGGTATAGTGTTGATTAGTTTCAGTC
59.241
37.037
0.00
0.00
0.00
3.51
3031
3385
7.497909
CCAAATTTCCTACGGTATAGTGTTGAT
59.502
37.037
0.00
0.00
0.00
2.57
3033
3387
6.819649
TCCAAATTTCCTACGGTATAGTGTTG
59.180
38.462
0.00
0.00
0.00
3.33
3035
3389
6.549433
TCCAAATTTCCTACGGTATAGTGT
57.451
37.500
0.00
0.00
0.00
3.55
3040
3403
6.494666
TCTCATCCAAATTTCCTACGGTAT
57.505
37.500
0.00
0.00
0.00
2.73
3065
3428
2.553602
GCCACAACATCACAACATCTCA
59.446
45.455
0.00
0.00
0.00
3.27
3066
3429
2.095059
GGCCACAACATCACAACATCTC
60.095
50.000
0.00
0.00
0.00
2.75
3067
3430
1.888512
GGCCACAACATCACAACATCT
59.111
47.619
0.00
0.00
0.00
2.90
3068
3431
1.612950
TGGCCACAACATCACAACATC
59.387
47.619
0.00
0.00
0.00
3.06
3069
3432
1.614903
CTGGCCACAACATCACAACAT
59.385
47.619
0.00
0.00
0.00
2.71
3070
3433
1.031235
CTGGCCACAACATCACAACA
58.969
50.000
0.00
0.00
0.00
3.33
3071
3434
1.032014
ACTGGCCACAACATCACAAC
58.968
50.000
0.00
0.00
0.00
3.32
3072
3435
1.031235
CACTGGCCACAACATCACAA
58.969
50.000
0.00
0.00
0.00
3.33
3073
3436
0.182299
TCACTGGCCACAACATCACA
59.818
50.000
0.00
0.00
0.00
3.58
3074
3437
1.470098
GATCACTGGCCACAACATCAC
59.530
52.381
0.00
0.00
0.00
3.06
3075
3438
1.352017
AGATCACTGGCCACAACATCA
59.648
47.619
0.00
0.00
0.00
3.07
3076
3439
2.119801
AGATCACTGGCCACAACATC
57.880
50.000
0.00
0.84
0.00
3.06
3077
3440
2.592102
AAGATCACTGGCCACAACAT
57.408
45.000
0.00
0.00
0.00
2.71
3078
3441
3.146066
GTTAAGATCACTGGCCACAACA
58.854
45.455
0.00
0.00
0.00
3.33
3079
3442
3.146066
TGTTAAGATCACTGGCCACAAC
58.854
45.455
0.00
0.00
0.00
3.32
3080
3443
3.500448
TGTTAAGATCACTGGCCACAA
57.500
42.857
0.00
0.00
0.00
3.33
3081
3444
3.008923
TCATGTTAAGATCACTGGCCACA
59.991
43.478
0.00
0.00
0.00
4.17
3082
3445
3.609853
TCATGTTAAGATCACTGGCCAC
58.390
45.455
0.00
0.00
0.00
5.01
3083
3446
3.519107
TCTCATGTTAAGATCACTGGCCA
59.481
43.478
4.71
4.71
0.00
5.36
3084
3447
4.142609
TCTCATGTTAAGATCACTGGCC
57.857
45.455
0.00
0.00
0.00
5.36
3085
3448
5.819379
TCATTCTCATGTTAAGATCACTGGC
59.181
40.000
0.00
0.00
0.00
4.85
3086
3449
7.270779
TCTCATTCTCATGTTAAGATCACTGG
58.729
38.462
0.00
0.00
0.00
4.00
3087
3450
8.766151
CATCTCATTCTCATGTTAAGATCACTG
58.234
37.037
0.00
0.00
0.00
3.66
3088
3451
7.441760
GCATCTCATTCTCATGTTAAGATCACT
59.558
37.037
0.00
0.00
0.00
3.41
3129
3492
9.274206
CATCATTCAACATCTCATAGTTCATCT
57.726
33.333
0.00
0.00
0.00
2.90
3176
3542
2.338809
TCGCCAAATCAGGGATCCTAT
58.661
47.619
12.58
0.15
29.64
2.57
3182
3548
1.281867
AGTGAATCGCCAAATCAGGGA
59.718
47.619
0.00
0.00
0.00
4.20
3191
3557
1.203758
ACGACACATAGTGAATCGCCA
59.796
47.619
3.88
0.00
36.14
5.69
3192
3558
1.922570
ACGACACATAGTGAATCGCC
58.077
50.000
3.88
0.00
36.14
5.54
3193
3559
2.035674
CGAACGACACATAGTGAATCGC
60.036
50.000
3.88
0.00
36.14
4.58
3196
3562
4.552355
TGAACGAACGACACATAGTGAAT
58.448
39.130
3.88
0.00
36.96
2.57
3197
3563
3.967401
TGAACGAACGACACATAGTGAA
58.033
40.909
3.88
0.00
36.96
3.18
3203
3571
2.066262
GGACATGAACGAACGACACAT
58.934
47.619
0.00
1.30
0.00
3.21
3225
3593
2.989840
CGGAGATCGACCATTGCTAATC
59.010
50.000
11.37
0.00
42.43
1.75
3256
3624
2.029844
GACTGACAGGCTGAACGGC
61.030
63.158
23.66
6.64
38.75
5.68
3257
3625
0.034059
AAGACTGACAGGCTGAACGG
59.966
55.000
23.66
20.13
30.77
4.44
3258
3626
1.143305
CAAGACTGACAGGCTGAACG
58.857
55.000
23.66
10.58
30.77
3.95
3259
3627
1.517242
CCAAGACTGACAGGCTGAAC
58.483
55.000
23.66
14.82
30.77
3.18
3260
3628
0.397941
CCCAAGACTGACAGGCTGAA
59.602
55.000
23.66
8.02
30.77
3.02
3261
3629
2.061220
CCCAAGACTGACAGGCTGA
58.939
57.895
23.66
0.00
30.77
4.26
3262
3630
1.673665
GCCCAAGACTGACAGGCTG
60.674
63.158
12.78
14.16
40.57
4.85
3263
3631
1.495579
ATGCCCAAGACTGACAGGCT
61.496
55.000
4.48
4.48
44.19
4.58
3264
3632
1.001641
ATGCCCAAGACTGACAGGC
60.002
57.895
7.51
3.10
44.13
4.85
3265
3633
0.679002
CCATGCCCAAGACTGACAGG
60.679
60.000
7.51
0.00
0.00
4.00
3266
3634
1.310933
GCCATGCCCAAGACTGACAG
61.311
60.000
0.00
0.00
0.00
3.51
3267
3635
1.303561
GCCATGCCCAAGACTGACA
60.304
57.895
0.00
0.00
0.00
3.58
3268
3636
2.048603
GGCCATGCCCAAGACTGAC
61.049
63.158
0.00
0.00
44.06
3.51
3269
3637
2.356278
GGCCATGCCCAAGACTGA
59.644
61.111
0.00
0.00
44.06
3.41
3314
3689
0.454620
CTCGTACGTGGAGTGACAGC
60.455
60.000
16.05
0.00
0.00
4.40
3316
3691
0.887836
AGCTCGTACGTGGAGTGACA
60.888
55.000
16.05
0.00
34.00
3.58
3317
3692
0.179194
GAGCTCGTACGTGGAGTGAC
60.179
60.000
16.05
0.00
34.00
3.67
3322
3698
5.276270
GTTATTTATGAGCTCGTACGTGGA
58.724
41.667
15.35
0.00
0.00
4.02
3355
3738
3.414700
CGTGCAGGAGCGTGGTTC
61.415
66.667
0.00
0.00
46.23
3.62
3391
3774
2.815647
CGCGTCCTCCTTGCTTCC
60.816
66.667
0.00
0.00
0.00
3.46
3415
3798
4.758251
CTGCCGCCATGGACGTGA
62.758
66.667
18.40
6.30
42.00
4.35
3581
3970
3.519930
GCGTCGGAGGAGAGGGAC
61.520
72.222
1.18
0.00
0.00
4.46
3740
4129
4.498520
TAGAGCTCCGTGCAGCGC
62.499
66.667
10.93
0.00
44.82
5.92
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.