Multiple sequence alignment - TraesCS7D01G022300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G022300 chr7D 100.000 7596 0 0 1 7596 10502217 10494622 0.000000e+00 14028.0
1 TraesCS7D01G022300 chr7D 83.493 2187 286 39 3580 5718 9310747 9312906 0.000000e+00 1969.0
2 TraesCS7D01G022300 chr7D 82.607 2248 300 49 3499 5695 8346427 8344220 0.000000e+00 1901.0
3 TraesCS7D01G022300 chr7D 73.754 2027 418 58 3585 5567 3688390 3690346 0.000000e+00 691.0
4 TraesCS7D01G022300 chr7D 94.158 291 16 1 6987 7277 9314387 9314676 7.000000e-120 442.0
5 TraesCS7D01G022300 chr7D 77.208 838 135 30 1000 1791 9309692 9310519 9.050000e-119 438.0
6 TraesCS7D01G022300 chr7D 83.140 344 50 6 6111 6449 8343819 8343479 2.660000e-79 307.0
7 TraesCS7D01G022300 chr7D 74.539 271 52 13 1010 1276 2650092 2650349 1.350000e-17 102.0
8 TraesCS7D01G022300 chr4A 97.679 6161 130 7 1 6156 728504794 728498642 0.000000e+00 10573.0
9 TraesCS7D01G022300 chr4A 82.418 2275 306 53 3499 5721 731408013 731410245 0.000000e+00 1899.0
10 TraesCS7D01G022300 chr4A 94.425 1148 37 2 6153 7277 728487646 728486503 0.000000e+00 1740.0
11 TraesCS7D01G022300 chr4A 81.622 1997 280 47 3580 5528 730113825 730111868 0.000000e+00 1574.0
12 TraesCS7D01G022300 chr4A 81.070 935 122 26 5719 6609 731410278 731411201 0.000000e+00 695.0
13 TraesCS7D01G022300 chr4A 88.498 426 35 8 7008 7421 729640953 729641376 3.160000e-138 503.0
14 TraesCS7D01G022300 chr4A 86.869 396 47 4 5719 6110 729639885 729640279 9.050000e-119 438.0
15 TraesCS7D01G022300 chr4A 75.524 858 136 47 912 1718 731406952 731407786 3.370000e-93 353.0
16 TraesCS7D01G022300 chr4A 86.301 292 8 17 7286 7577 728486455 728486196 9.640000e-74 289.0
17 TraesCS7D01G022300 chr4A 87.500 136 16 1 7142 7276 728840583 728840718 1.020000e-33 156.0
18 TraesCS7D01G022300 chr4A 79.907 214 38 4 6610 6822 730108035 730107826 1.320000e-32 152.0
19 TraesCS7D01G022300 chr4A 79.535 215 39 4 6768 6982 728840213 728840422 1.710000e-31 148.0
20 TraesCS7D01G022300 chr4A 82.474 97 11 4 6365 6457 728820480 728820386 6.320000e-11 80.5
21 TraesCS7D01G022300 chr2D 83.171 2151 294 41 3584 5694 603209353 603211475 0.000000e+00 1905.0
22 TraesCS7D01G022300 chr2D 81.414 495 65 10 920 1398 603208243 603208726 5.560000e-101 379.0
23 TraesCS7D01G022300 chr7A 82.724 2188 310 43 3580 5723 8779917 8777754 0.000000e+00 1884.0
24 TraesCS7D01G022300 chr7A 83.472 1446 181 31 3519 4934 9009262 9010679 0.000000e+00 1293.0
25 TraesCS7D01G022300 chr7A 89.450 872 78 7 6111 6982 9013983 9014840 0.000000e+00 1088.0
26 TraesCS7D01G022300 chr7A 74.394 2023 393 66 3581 5552 2715958 2717906 0.000000e+00 750.0
27 TraesCS7D01G022300 chr7A 73.855 1943 390 80 3710 5601 3413745 3415620 0.000000e+00 665.0
28 TraesCS7D01G022300 chr7A 84.154 650 92 9 4966 5611 9011911 9012553 3.010000e-173 619.0
29 TraesCS7D01G022300 chr7A 77.126 835 130 33 1001 1791 8780950 8780133 1.960000e-115 427.0
30 TraesCS7D01G022300 chr7A 76.316 874 153 26 998 1819 9008255 9009126 1.180000e-112 418.0
31 TraesCS7D01G022300 chr7A 84.673 398 52 3 5719 6110 8777722 8777328 9.240000e-104 388.0
32 TraesCS7D01G022300 chr7A 87.726 277 25 1 5834 6110 9013681 9013948 1.590000e-81 315.0
33 TraesCS7D01G022300 chr7A 73.606 269 52 15 1013 1276 3273258 3273512 1.360000e-12 86.1
34 TraesCS7D01G022300 chr1D 74.971 1746 346 52 3839 5558 456653747 456655427 0.000000e+00 719.0
35 TraesCS7D01G022300 chr5B 85.890 326 40 3 5237 5559 21691436 21691114 7.300000e-90 342.0
36 TraesCS7D01G022300 chr6B 75.714 210 38 11 1069 1276 77778706 77778508 8.120000e-15 93.5
37 TraesCS7D01G022300 chr5D 73.518 253 52 13 1030 1279 29570232 29569992 1.760000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G022300 chr7D 10494622 10502217 7595 True 14028.000000 14028 100.000000 1 7596 1 chr7D.!!$R1 7595
1 TraesCS7D01G022300 chr7D 8343479 8346427 2948 True 1104.000000 1901 82.873500 3499 6449 2 chr7D.!!$R2 2950
2 TraesCS7D01G022300 chr7D 9309692 9314676 4984 False 949.666667 1969 84.953000 1000 7277 3 chr7D.!!$F3 6277
3 TraesCS7D01G022300 chr7D 3688390 3690346 1956 False 691.000000 691 73.754000 3585 5567 1 chr7D.!!$F2 1982
4 TraesCS7D01G022300 chr4A 728498642 728504794 6152 True 10573.000000 10573 97.679000 1 6156 1 chr4A.!!$R1 6155
5 TraesCS7D01G022300 chr4A 728486196 728487646 1450 True 1014.500000 1740 90.363000 6153 7577 2 chr4A.!!$R3 1424
6 TraesCS7D01G022300 chr4A 731406952 731411201 4249 False 982.333333 1899 79.670667 912 6609 3 chr4A.!!$F3 5697
7 TraesCS7D01G022300 chr4A 730107826 730113825 5999 True 863.000000 1574 80.764500 3580 6822 2 chr4A.!!$R4 3242
8 TraesCS7D01G022300 chr4A 729639885 729641376 1491 False 470.500000 503 87.683500 5719 7421 2 chr4A.!!$F2 1702
9 TraesCS7D01G022300 chr2D 603208243 603211475 3232 False 1142.000000 1905 82.292500 920 5694 2 chr2D.!!$F1 4774
10 TraesCS7D01G022300 chr7A 8777328 8780950 3622 True 899.666667 1884 81.507667 1001 6110 3 chr7A.!!$R1 5109
11 TraesCS7D01G022300 chr7A 2715958 2717906 1948 False 750.000000 750 74.394000 3581 5552 1 chr7A.!!$F1 1971
12 TraesCS7D01G022300 chr7A 9008255 9014840 6585 False 746.600000 1293 84.223600 998 6982 5 chr7A.!!$F4 5984
13 TraesCS7D01G022300 chr7A 3413745 3415620 1875 False 665.000000 665 73.855000 3710 5601 1 chr7A.!!$F3 1891
14 TraesCS7D01G022300 chr1D 456653747 456655427 1680 False 719.000000 719 74.971000 3839 5558 1 chr1D.!!$F1 1719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 733 1.301479 GGTTCAGTGGACGGTGGTC 60.301 63.158 0.00 0.00 42.66 4.02 F
1493 1558 0.835971 TCTGCTAACAGCCCTGTGGA 60.836 55.000 1.07 0.00 44.13 4.02 F
2833 2931 0.180642 TACTCGTTGTTGGCCACCAA 59.819 50.000 12.31 12.31 41.69 3.67 F
4536 4722 1.171308 CCAGTTGGAGGACAAGCATG 58.829 55.000 0.00 0.00 40.38 4.06 F
4746 4938 2.185004 ACTGCAACATGGTGTAGGAC 57.815 50.000 29.11 6.10 35.72 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2309 2406 0.739813 CCCTACTTCGCCGAGTTTGG 60.740 60.000 0.00 0.0 0.00 3.28 R
3003 3101 0.109597 CCGTCATTGTGCTTTGAGGC 60.110 55.000 0.00 0.0 0.00 4.70 R
4746 4938 1.514873 GCTTGAGCATTTTCCGGCG 60.515 57.895 0.00 0.0 41.59 6.46 R
5350 6769 2.158842 CCCTCTTCGATTTCCAGCTCAT 60.159 50.000 0.00 0.0 0.00 2.90 R
6716 12176 1.169577 GACAGACGAGCTCCTGAAGA 58.830 55.000 22.22 0.0 34.65 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 135 9.965824 CATGTCCCCATACAATAAATTAGAAAC 57.034 33.333 0.00 0.00 32.02 2.78
205 206 3.950397 TGCTAGGGTATGAACTGGTTTG 58.050 45.455 0.00 0.00 0.00 2.93
386 387 2.210116 TGTTTTCCTCTGCGTCAACTC 58.790 47.619 0.00 0.00 0.00 3.01
645 646 4.772624 AGCTATGTACTGAAGACAAGTCCA 59.227 41.667 0.00 0.00 0.00 4.02
659 660 3.888930 ACAAGTCCATGTCCGAAATTTGT 59.111 39.130 0.00 0.00 0.00 2.83
725 726 6.366061 GCATCATTTAAAAAGGTTCAGTGGAC 59.634 38.462 0.00 0.00 0.00 4.02
731 732 1.342672 AAGGTTCAGTGGACGGTGGT 61.343 55.000 0.00 0.00 0.00 4.16
732 733 1.301479 GGTTCAGTGGACGGTGGTC 60.301 63.158 0.00 0.00 42.66 4.02
745 746 2.038387 GGTGGTCCAGCGATGTAAAT 57.962 50.000 5.07 0.00 0.00 1.40
756 757 5.760253 CCAGCGATGTAAATAGATTCTTGGT 59.240 40.000 0.00 0.00 0.00 3.67
764 765 8.662781 TGTAAATAGATTCTTGGTAGCATCAC 57.337 34.615 0.00 0.00 0.00 3.06
765 766 8.264347 TGTAAATAGATTCTTGGTAGCATCACA 58.736 33.333 0.00 0.00 0.00 3.58
772 773 7.776969 AGATTCTTGGTAGCATCACATGTAAAT 59.223 33.333 0.00 0.00 0.00 1.40
792 794 7.668052 TGTAAATATTAACTCCAGCAAGTTGGT 59.332 33.333 0.63 0.63 39.74 3.67
825 827 3.668821 TGGGATGACTAATCAGGGATGT 58.331 45.455 0.00 0.00 38.57 3.06
854 856 7.569240 AGTAAAATATCTCTAAGCAGGCACTT 58.431 34.615 0.00 0.00 34.60 3.16
871 873 1.625818 ACTTGCAGCTAGCTACCTTGT 59.374 47.619 18.86 10.04 45.94 3.16
993 995 2.634940 GAGGAAGACATATAGGCCAGCA 59.365 50.000 5.01 0.00 0.00 4.41
1180 1182 3.695606 GTCGCTGGAGGAGTGGCA 61.696 66.667 0.00 0.00 36.74 4.92
1212 1232 2.434843 CGTGCAGAGGGCCTGGATA 61.435 63.158 12.95 0.00 45.11 2.59
1493 1558 0.835971 TCTGCTAACAGCCCTGTGGA 60.836 55.000 1.07 0.00 44.13 4.02
1701 1769 6.122277 GGATGTTCTCATTGAGATAACCCAA 58.878 40.000 16.82 0.00 38.56 4.12
1916 2013 6.591935 TCTTATCCCCTTTGTACTTGCATAG 58.408 40.000 0.00 0.00 0.00 2.23
2007 2104 4.399303 CACTTAGCCAAATTCACCCTAAGG 59.601 45.833 14.37 0.00 39.32 2.69
2060 2157 6.071320 ACTAGAGAATTGCCCTTTGAAACTT 58.929 36.000 0.00 0.00 0.00 2.66
2063 2160 5.541484 AGAGAATTGCCCTTTGAAACTTCAT 59.459 36.000 0.00 0.00 37.00 2.57
2066 2163 7.734942 AGAATTGCCCTTTGAAACTTCATAAA 58.265 30.769 0.00 0.00 37.00 1.40
2067 2164 7.874528 AGAATTGCCCTTTGAAACTTCATAAAG 59.125 33.333 0.00 0.00 37.00 1.85
2070 2167 4.021104 GCCCTTTGAAACTTCATAAAGCCT 60.021 41.667 0.00 0.00 37.00 4.58
2071 2168 5.473039 CCCTTTGAAACTTCATAAAGCCTG 58.527 41.667 0.00 0.00 37.00 4.85
2072 2169 5.243730 CCCTTTGAAACTTCATAAAGCCTGA 59.756 40.000 0.00 0.00 37.00 3.86
2073 2170 6.152379 CCTTTGAAACTTCATAAAGCCTGAC 58.848 40.000 0.00 0.00 37.00 3.51
2167 2264 9.793259 TTACCATTCATCCTAAAATAAGGCTAG 57.207 33.333 0.00 0.00 36.51 3.42
2169 2266 7.939588 ACCATTCATCCTAAAATAAGGCTAGTC 59.060 37.037 0.00 0.00 36.51 2.59
2180 2277 7.964604 AAATAAGGCTAGTCGTATTTCCATC 57.035 36.000 18.73 0.00 29.75 3.51
2190 2287 6.109359 AGTCGTATTTCCATCCTTTCAAGAG 58.891 40.000 0.00 0.00 0.00 2.85
2235 2332 2.642171 TCCCATGGAGTAGGTTGTCT 57.358 50.000 15.22 0.00 0.00 3.41
2236 2333 2.467880 TCCCATGGAGTAGGTTGTCTC 58.532 52.381 15.22 0.00 0.00 3.36
2259 2356 1.299240 TAGTGTCGCGTCGTTTGCA 60.299 52.632 5.77 0.00 0.00 4.08
2294 2391 2.826979 TAGCGTTGTCTCTCGTCATC 57.173 50.000 0.00 0.00 0.00 2.92
2309 2406 0.735978 TCATCGACGTCACATGTGGC 60.736 55.000 25.16 22.98 0.00 5.01
2343 2441 0.918983 TAGGGAGAAATGCAGTGGGG 59.081 55.000 0.00 0.00 0.00 4.96
2398 2496 5.334421 AGGGTGGCTCTCTATTTATACGAT 58.666 41.667 0.00 0.00 0.00 3.73
2403 2501 6.309251 GTGGCTCTCTATTTATACGATTGAGC 59.691 42.308 0.00 0.00 42.26 4.26
2410 2508 3.918258 TTATACGATTGAGCGTGCAAC 57.082 42.857 4.37 0.00 45.23 4.17
2439 2537 1.133699 TCCTGCCAATGAGCCCTATTG 60.134 52.381 0.00 0.00 35.75 1.90
2466 2564 4.469657 TGAAGGCAACAGACCATTTAAGT 58.530 39.130 0.00 0.00 41.41 2.24
2473 2571 6.092748 GCAACAGACCATTTAAGTTGTATGG 58.907 40.000 13.60 13.60 43.55 2.74
2501 2599 7.173390 ACACTAATGAGACCAACTTAGAAAAGC 59.827 37.037 0.00 0.00 36.05 3.51
2523 2621 7.875327 AGCGGGTATAACATTTTGAGTTATT 57.125 32.000 4.18 0.00 41.17 1.40
2587 2685 7.281100 GCAAATAATAGACAGAAGTGCTTACCT 59.719 37.037 0.00 0.00 0.00 3.08
2776 2874 8.792830 TTAATGAGAGGTCAAAAGTTGATAGG 57.207 34.615 0.00 0.00 42.47 2.57
2804 2902 5.242838 TGGTAAGAATGTGCCGAAGAAATTT 59.757 36.000 0.00 0.00 0.00 1.82
2808 2906 5.464168 AGAATGTGCCGAAGAAATTTCAAG 58.536 37.500 19.99 10.12 0.00 3.02
2833 2931 0.180642 TACTCGTTGTTGGCCACCAA 59.819 50.000 12.31 12.31 41.69 3.67
2861 2959 9.228949 AGATATCCTCTTATTTGACATGAATGC 57.771 33.333 0.00 0.00 0.00 3.56
2898 2996 5.423015 CAGAAGGCTAGATTGAGCAAACTA 58.577 41.667 0.00 1.18 44.76 2.24
2904 3002 7.569240 AGGCTAGATTGAGCAAACTACTTAAT 58.431 34.615 0.00 0.00 44.76 1.40
2959 3057 9.329913 GCACACAACATGTAAGACTATAAAAAG 57.670 33.333 0.00 0.00 40.64 2.27
3131 3229 8.537016 AGTATACCACTGTTTCTGCACTAAATA 58.463 33.333 0.00 0.00 35.62 1.40
3240 3338 3.926616 ACTGGAGACGGACTAACATTTG 58.073 45.455 0.00 0.00 41.09 2.32
3700 3831 2.417933 CAGCCATTCAGTCAGTAGCAAC 59.582 50.000 0.00 0.00 0.00 4.17
3760 3894 4.703645 TGAGAACTCTTACCGAGACATG 57.296 45.455 3.51 0.00 42.62 3.21
4091 4253 1.567357 AGGTCAGGAGAAGAAGCCTC 58.433 55.000 0.00 0.00 30.41 4.70
4426 4612 4.862902 ATGATCTATCTCTTGTCCGGTG 57.137 45.455 0.00 0.00 0.00 4.94
4536 4722 1.171308 CCAGTTGGAGGACAAGCATG 58.829 55.000 0.00 0.00 40.38 4.06
4746 4938 2.185004 ACTGCAACATGGTGTAGGAC 57.815 50.000 29.11 6.10 35.72 3.85
4936 5134 4.985538 AGTATTACGGATCCCATTGCAAT 58.014 39.130 5.99 5.99 0.00 3.56
5029 6433 6.291648 AGCTCATTCACTCTCACTGAATTA 57.708 37.500 0.00 0.00 36.42 1.40
5223 6642 3.782523 TCAGCTGACCAGGGATATTCTTT 59.217 43.478 13.74 0.00 0.00 2.52
5350 6769 2.698803 CATCGTGGTGGAAGTCATGAA 58.301 47.619 0.00 0.00 33.34 2.57
5701 9712 2.579624 TCTGGTAATCAAGGGCCCTA 57.420 50.000 28.96 11.75 0.00 3.53
6277 11307 9.667107 TTCCTATGAGTTTTGATTCGTTCTATT 57.333 29.630 0.00 0.00 0.00 1.73
6278 11308 9.098355 TCCTATGAGTTTTGATTCGTTCTATTG 57.902 33.333 0.00 0.00 0.00 1.90
6359 11389 6.093495 TCCTGTTTCTTTTAACTGTCTGTGTG 59.907 38.462 0.00 0.00 0.00 3.82
6643 11761 2.610479 GGTCAATCTTGCTCGTGAGTCA 60.610 50.000 0.00 0.00 0.00 3.41
6700 12160 6.472686 TGGCATTTGGTGTTTAACTAAGTT 57.527 33.333 0.00 0.00 30.06 2.66
6704 12164 6.975772 GCATTTGGTGTTTAACTAAGTTGTCA 59.024 34.615 0.00 0.00 30.06 3.58
6716 12176 7.730364 AACTAAGTTGTCATCGATTCTGTTT 57.270 32.000 0.00 0.00 0.00 2.83
6728 12188 3.616379 CGATTCTGTTTCTTCAGGAGCTC 59.384 47.826 4.71 4.71 36.25 4.09
6740 12200 2.029828 TCAGGAGCTCGTCTGTCTTTTC 60.030 50.000 16.58 0.00 33.13 2.29
6756 12216 1.851304 TTTCATCCCCTGGCATGTTC 58.149 50.000 0.00 0.00 0.00 3.18
6787 12247 0.737219 GTGAATCCTCATGTGCTGCC 59.263 55.000 0.00 0.00 33.05 4.85
6799 12259 2.176792 GCTGCCGCTTGCTACAAC 59.823 61.111 0.00 0.00 42.00 3.32
6803 12263 1.376037 GCCGCTTGCTACAACTCCT 60.376 57.895 0.00 0.00 36.87 3.69
6832 12303 2.166459 CTGATACGGCTCTGGTGAAGAA 59.834 50.000 0.00 0.00 33.37 2.52
6833 12304 2.565391 TGATACGGCTCTGGTGAAGAAA 59.435 45.455 0.00 0.00 33.37 2.52
6836 12307 1.151668 CGGCTCTGGTGAAGAAAGTG 58.848 55.000 0.00 0.00 33.37 3.16
6845 12316 3.627577 TGGTGAAGAAAGTGAAGTGCTTC 59.372 43.478 5.07 5.07 39.91 3.86
6849 12320 4.889409 TGAAGAAAGTGAAGTGCTTCCAAT 59.111 37.500 9.18 0.00 38.77 3.16
6850 12321 5.360714 TGAAGAAAGTGAAGTGCTTCCAATT 59.639 36.000 9.18 2.21 38.77 2.32
6852 12323 6.566197 AGAAAGTGAAGTGCTTCCAATTAG 57.434 37.500 9.18 0.00 38.77 1.73
6853 12324 4.773323 AAGTGAAGTGCTTCCAATTAGC 57.227 40.909 9.18 0.00 38.77 3.09
6856 12327 4.457257 AGTGAAGTGCTTCCAATTAGCTTC 59.543 41.667 9.18 0.00 39.38 3.86
6891 12363 7.884816 TTCTACTTGTACTGCAACATAAGTC 57.115 36.000 11.17 0.00 32.90 3.01
6898 12370 8.671384 TTGTACTGCAACATAAGTCTACTTTT 57.329 30.769 0.00 0.00 33.28 2.27
6905 12377 8.397906 TGCAACATAAGTCTACTTTTATGCATC 58.602 33.333 0.19 0.00 39.66 3.91
6908 12380 8.581057 ACATAAGTCTACTTTTATGCATCTCG 57.419 34.615 0.19 0.00 39.66 4.04
6927 12399 2.083774 CGATTTGGTGGCTTTCTGCTA 58.916 47.619 0.00 0.00 42.39 3.49
6948 12420 6.051717 GCTATGACAGAGTTCACCATGTATT 58.948 40.000 0.00 0.00 0.00 1.89
6955 12427 5.630680 CAGAGTTCACCATGTATTTTGTTGC 59.369 40.000 0.00 0.00 0.00 4.17
6960 12432 7.760794 AGTTCACCATGTATTTTGTTGCATATG 59.239 33.333 0.00 0.00 0.00 1.78
7122 12634 7.602644 CGATAATTAGCATGGAAACTAAGGCTA 59.397 37.037 1.10 0.00 32.20 3.93
7123 12635 9.284968 GATAATTAGCATGGAAACTAAGGCTAA 57.715 33.333 0.00 0.00 44.79 3.09
7277 12791 1.085091 CCAAGCAGCATCAGAGACAC 58.915 55.000 0.00 0.00 0.00 3.67
7279 12793 0.390866 AAGCAGCATCAGAGACACCG 60.391 55.000 0.00 0.00 0.00 4.94
7281 12795 1.153489 CAGCATCAGAGACACCGGG 60.153 63.158 6.32 0.00 0.00 5.73
7282 12796 1.610673 AGCATCAGAGACACCGGGT 60.611 57.895 6.32 0.00 0.00 5.28
7283 12797 1.194781 AGCATCAGAGACACCGGGTT 61.195 55.000 6.32 0.00 0.00 4.11
7285 12799 0.898320 CATCAGAGACACCGGGTTCT 59.102 55.000 6.32 6.60 0.00 3.01
7286 12800 1.134965 CATCAGAGACACCGGGTTCTC 60.135 57.143 21.43 21.43 0.00 2.87
7287 12801 0.898789 TCAGAGACACCGGGTTCTCC 60.899 60.000 23.97 11.40 0.00 3.71
7332 12884 3.585862 TGTTCATTCGACTAGTCCTTGC 58.414 45.455 17.23 2.52 0.00 4.01
7337 12889 0.322277 TCGACTAGTCCTTGCTCGGT 60.322 55.000 17.23 0.00 0.00 4.69
7338 12890 0.179161 CGACTAGTCCTTGCTCGGTG 60.179 60.000 17.23 0.00 0.00 4.94
7414 12966 4.021192 ACAAGCTGTTTGGTATGGAAATGG 60.021 41.667 9.07 0.00 41.25 3.16
7447 12999 7.750229 AAAGATGACAAGCAAGAAACTATGA 57.250 32.000 0.00 0.00 0.00 2.15
7448 13000 7.934855 AAGATGACAAGCAAGAAACTATGAT 57.065 32.000 0.00 0.00 0.00 2.45
7449 13001 7.317842 AGATGACAAGCAAGAAACTATGATG 57.682 36.000 0.00 0.00 0.00 3.07
7450 13002 7.108194 AGATGACAAGCAAGAAACTATGATGA 58.892 34.615 0.00 0.00 0.00 2.92
7451 13003 7.609146 AGATGACAAGCAAGAAACTATGATGAA 59.391 33.333 0.00 0.00 0.00 2.57
7452 13004 7.509141 TGACAAGCAAGAAACTATGATGAAA 57.491 32.000 0.00 0.00 0.00 2.69
7453 13005 7.362662 TGACAAGCAAGAAACTATGATGAAAC 58.637 34.615 0.00 0.00 0.00 2.78
7454 13006 6.681777 ACAAGCAAGAAACTATGATGAAACC 58.318 36.000 0.00 0.00 0.00 3.27
7455 13007 6.265196 ACAAGCAAGAAACTATGATGAAACCA 59.735 34.615 0.00 0.00 0.00 3.67
7456 13008 7.039504 ACAAGCAAGAAACTATGATGAAACCAT 60.040 33.333 0.00 0.00 0.00 3.55
7457 13009 6.860080 AGCAAGAAACTATGATGAAACCATG 58.140 36.000 0.00 0.00 0.00 3.66
7458 13010 6.660521 AGCAAGAAACTATGATGAAACCATGA 59.339 34.615 0.00 0.00 0.00 3.07
7459 13011 6.749118 GCAAGAAACTATGATGAAACCATGAC 59.251 38.462 0.00 0.00 0.00 3.06
7460 13012 7.575532 GCAAGAAACTATGATGAAACCATGACA 60.576 37.037 0.00 0.00 0.00 3.58
7461 13013 8.298854 CAAGAAACTATGATGAAACCATGACAA 58.701 33.333 0.00 0.00 0.00 3.18
7462 13014 8.048534 AGAAACTATGATGAAACCATGACAAG 57.951 34.615 0.00 0.00 0.00 3.16
7463 13015 5.824904 ACTATGATGAAACCATGACAAGC 57.175 39.130 0.00 0.00 0.00 4.01
7464 13016 5.255687 ACTATGATGAAACCATGACAAGCA 58.744 37.500 0.00 0.00 0.00 3.91
7465 13017 5.711506 ACTATGATGAAACCATGACAAGCAA 59.288 36.000 0.00 0.00 0.00 3.91
7466 13018 4.508461 TGATGAAACCATGACAAGCAAG 57.492 40.909 0.00 0.00 0.00 4.01
7467 13019 4.143543 TGATGAAACCATGACAAGCAAGA 58.856 39.130 0.00 0.00 0.00 3.02
7468 13020 4.583907 TGATGAAACCATGACAAGCAAGAA 59.416 37.500 0.00 0.00 0.00 2.52
7469 13021 4.998671 TGAAACCATGACAAGCAAGAAA 57.001 36.364 0.00 0.00 0.00 2.52
7470 13022 5.336150 TGAAACCATGACAAGCAAGAAAA 57.664 34.783 0.00 0.00 0.00 2.29
7471 13023 5.728471 TGAAACCATGACAAGCAAGAAAAA 58.272 33.333 0.00 0.00 0.00 1.94
7472 13024 5.580297 TGAAACCATGACAAGCAAGAAAAAC 59.420 36.000 0.00 0.00 0.00 2.43
7473 13025 5.343307 AACCATGACAAGCAAGAAAAACT 57.657 34.783 0.00 0.00 0.00 2.66
7474 13026 6.463995 AACCATGACAAGCAAGAAAAACTA 57.536 33.333 0.00 0.00 0.00 2.24
7475 13027 6.655078 ACCATGACAAGCAAGAAAAACTAT 57.345 33.333 0.00 0.00 0.00 2.12
7476 13028 6.449698 ACCATGACAAGCAAGAAAAACTATG 58.550 36.000 0.00 0.00 0.00 2.23
7477 13029 6.265196 ACCATGACAAGCAAGAAAAACTATGA 59.735 34.615 0.00 0.00 0.00 2.15
7508 13060 5.446143 AATGAAATTGAACCGTACTTGCA 57.554 34.783 0.00 0.00 33.44 4.08
7563 13115 4.819761 GAGCACCGCCATCTCGCA 62.820 66.667 0.00 0.00 0.00 5.10
7577 13129 3.508840 CGCAACATTCCGAGCCCC 61.509 66.667 0.00 0.00 0.00 5.80
7578 13130 2.044946 GCAACATTCCGAGCCCCT 60.045 61.111 0.00 0.00 0.00 4.79
7579 13131 2.409870 GCAACATTCCGAGCCCCTG 61.410 63.158 0.00 0.00 0.00 4.45
7580 13132 1.002134 CAACATTCCGAGCCCCTGT 60.002 57.895 0.00 0.00 0.00 4.00
7581 13133 1.026718 CAACATTCCGAGCCCCTGTC 61.027 60.000 0.00 0.00 0.00 3.51
7582 13134 1.201429 AACATTCCGAGCCCCTGTCT 61.201 55.000 0.00 0.00 0.00 3.41
7583 13135 1.153289 CATTCCGAGCCCCTGTCTG 60.153 63.158 0.00 0.00 0.00 3.51
7584 13136 1.306141 ATTCCGAGCCCCTGTCTGA 60.306 57.895 0.00 0.00 0.00 3.27
7585 13137 0.909610 ATTCCGAGCCCCTGTCTGAA 60.910 55.000 0.00 0.00 0.00 3.02
7586 13138 0.909610 TTCCGAGCCCCTGTCTGAAT 60.910 55.000 0.00 0.00 0.00 2.57
7587 13139 1.144936 CCGAGCCCCTGTCTGAATC 59.855 63.158 0.00 0.00 0.00 2.52
7588 13140 1.333636 CCGAGCCCCTGTCTGAATCT 61.334 60.000 0.00 0.00 0.00 2.40
7589 13141 0.103937 CGAGCCCCTGTCTGAATCTC 59.896 60.000 0.00 0.00 0.00 2.75
7590 13142 1.198713 GAGCCCCTGTCTGAATCTCA 58.801 55.000 0.00 0.00 0.00 3.27
7591 13143 1.767681 GAGCCCCTGTCTGAATCTCAT 59.232 52.381 0.00 0.00 0.00 2.90
7592 13144 1.767681 AGCCCCTGTCTGAATCTCATC 59.232 52.381 0.00 0.00 0.00 2.92
7593 13145 1.767681 GCCCCTGTCTGAATCTCATCT 59.232 52.381 0.00 0.00 0.00 2.90
7594 13146 2.224257 GCCCCTGTCTGAATCTCATCTC 60.224 54.545 0.00 0.00 0.00 2.75
7595 13147 3.307506 CCCCTGTCTGAATCTCATCTCT 58.692 50.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.930371 GCTTAACTTTGCAAGCACGGG 60.930 52.381 0.00 0.00 45.20 5.28
78 79 6.921857 CAGTTCAAGCATCTTTCTCAATTTGT 59.078 34.615 0.00 0.00 0.00 2.83
134 135 2.045926 GGTGGTGGCAGGTAGCTG 60.046 66.667 17.67 17.67 44.79 4.24
184 185 3.329520 ACAAACCAGTTCATACCCTAGCA 59.670 43.478 0.00 0.00 0.00 3.49
185 186 3.951663 ACAAACCAGTTCATACCCTAGC 58.048 45.455 0.00 0.00 0.00 3.42
359 360 4.000988 GACGCAGAGGAAAACATAAAGGA 58.999 43.478 0.00 0.00 0.00 3.36
361 362 5.049405 AGTTGACGCAGAGGAAAACATAAAG 60.049 40.000 0.00 0.00 0.00 1.85
386 387 6.122277 TGCCTCATTCAATTAGTTAAGGGAG 58.878 40.000 0.00 0.00 0.00 4.30
556 557 3.542712 TGAAAGTACTCGTCGGTACAC 57.457 47.619 19.44 13.15 43.01 2.90
616 617 5.479306 TGTCTTCAGTACATAGCTTTGACC 58.521 41.667 11.39 0.94 0.00 4.02
645 646 4.692228 ACAAAAGCACAAATTTCGGACAT 58.308 34.783 0.00 0.00 0.00 3.06
725 726 0.390603 TTTACATCGCTGGACCACCG 60.391 55.000 2.58 2.58 39.42 4.94
731 732 5.991606 CCAAGAATCTATTTACATCGCTGGA 59.008 40.000 0.00 0.00 0.00 3.86
732 733 5.760253 ACCAAGAATCTATTTACATCGCTGG 59.240 40.000 0.00 0.00 0.00 4.85
742 743 7.776969 ACATGTGATGCTACCAAGAATCTATTT 59.223 33.333 0.00 0.00 38.48 1.40
745 746 6.239217 ACATGTGATGCTACCAAGAATCTA 57.761 37.500 0.00 0.00 38.48 1.98
764 765 9.507280 CAACTTGCTGGAGTTAATATTTACATG 57.493 33.333 7.30 0.00 37.76 3.21
765 766 8.686334 CCAACTTGCTGGAGTTAATATTTACAT 58.314 33.333 7.30 0.00 37.76 2.29
772 773 4.042311 TCCACCAACTTGCTGGAGTTAATA 59.958 41.667 2.10 0.00 37.76 0.98
792 794 3.080765 ATCCCATCCACGCGTCCA 61.081 61.111 9.86 0.00 0.00 4.02
796 798 0.104120 TTAGTCATCCCATCCACGCG 59.896 55.000 3.53 3.53 0.00 6.01
825 827 6.992715 GCCTGCTTAGAGATATTTTACTCCAA 59.007 38.462 0.00 0.00 34.13 3.53
854 856 3.432186 CCATAACAAGGTAGCTAGCTGCA 60.432 47.826 30.27 12.29 45.94 4.41
909 911 1.960689 GGATACAGAGAGGAGGTCAGC 59.039 57.143 0.00 0.00 0.00 4.26
910 912 3.304911 TGGATACAGAGAGGAGGTCAG 57.695 52.381 0.00 0.00 46.17 3.51
993 995 1.617536 TGCAGCCTCCATCTCCCTT 60.618 57.895 0.00 0.00 0.00 3.95
1180 1182 2.737180 CACGTGGTCAGTCCTGCT 59.263 61.111 7.95 0.00 37.07 4.24
1212 1232 3.668596 GCCAAGTCGCGTATAATTTGT 57.331 42.857 5.77 0.00 0.00 2.83
1723 1800 1.133976 GGGATGACCTCCACCATCAAG 60.134 57.143 0.00 0.00 46.98 3.02
1916 2013 2.740981 CACCTGATCAGAACACAAGCTC 59.259 50.000 24.62 0.00 0.00 4.09
2007 2104 4.499357 CGCTAAAGTATACACCTCTCACCC 60.499 50.000 5.50 0.00 0.00 4.61
2060 2157 2.301870 AGAACCACGTCAGGCTTTATGA 59.698 45.455 0.00 0.00 0.00 2.15
2063 2160 1.414919 ACAGAACCACGTCAGGCTTTA 59.585 47.619 0.00 0.00 0.00 1.85
2066 2163 1.267121 ATACAGAACCACGTCAGGCT 58.733 50.000 0.00 0.00 0.00 4.58
2067 2164 2.094762 AATACAGAACCACGTCAGGC 57.905 50.000 0.00 0.00 0.00 4.85
2070 2167 6.778834 TCCTATAAATACAGAACCACGTCA 57.221 37.500 0.00 0.00 0.00 4.35
2071 2168 7.595502 CAGATCCTATAAATACAGAACCACGTC 59.404 40.741 0.00 0.00 0.00 4.34
2072 2169 7.287005 TCAGATCCTATAAATACAGAACCACGT 59.713 37.037 0.00 0.00 0.00 4.49
2073 2170 7.658261 TCAGATCCTATAAATACAGAACCACG 58.342 38.462 0.00 0.00 0.00 4.94
2166 2263 6.049955 TCTTGAAAGGATGGAAATACGACT 57.950 37.500 0.00 0.00 0.00 4.18
2167 2264 5.875359 ACTCTTGAAAGGATGGAAATACGAC 59.125 40.000 0.00 0.00 0.00 4.34
2169 2266 6.258068 GGTACTCTTGAAAGGATGGAAATACG 59.742 42.308 0.00 0.00 0.00 3.06
2180 2277 6.607004 TTTCTCTAGGGTACTCTTGAAAGG 57.393 41.667 0.00 0.00 0.00 3.11
2190 2287 8.135382 TGGCATAGAATATTTCTCTAGGGTAC 57.865 38.462 0.00 0.00 41.14 3.34
2235 2332 1.439201 CGACGCGACACTACAACGA 60.439 57.895 15.93 0.00 0.00 3.85
2236 2333 1.264141 AACGACGCGACACTACAACG 61.264 55.000 15.93 6.50 0.00 4.10
2259 2356 2.196749 CGCTAAGACTGATGTTGCGAT 58.803 47.619 0.00 0.00 43.81 4.58
2294 2391 1.502990 TTTGGCCACATGTGACGTCG 61.503 55.000 27.46 10.90 0.00 5.12
2309 2406 0.739813 CCCTACTTCGCCGAGTTTGG 60.740 60.000 0.00 0.00 0.00 3.28
2343 2441 1.135170 GGGTTGGTACTCGCTAGTCAC 60.135 57.143 0.00 0.00 37.15 3.67
2398 2496 3.913548 ATGTAATTGTTGCACGCTCAA 57.086 38.095 0.00 0.00 0.00 3.02
2403 2501 2.916716 GCAGGAATGTAATTGTTGCACG 59.083 45.455 0.00 0.00 40.20 5.34
2410 2508 4.365723 GCTCATTGGCAGGAATGTAATTG 58.634 43.478 0.00 0.00 36.07 2.32
2439 2537 2.297701 TGGTCTGTTGCCTTCAGAAAC 58.702 47.619 4.58 2.97 42.42 2.78
2466 2564 6.860790 TGGTCTCATTAGTGTACCATACAA 57.139 37.500 9.87 0.00 40.93 2.41
2473 2571 9.485206 TTTTCTAAGTTGGTCTCATTAGTGTAC 57.515 33.333 0.00 0.00 0.00 2.90
2560 2658 7.281100 GGTAAGCACTTCTGTCTATTATTTGCT 59.719 37.037 0.00 0.00 39.42 3.91
2587 2685 5.486735 TTACGGACCTTATTCTTGACCAA 57.513 39.130 0.00 0.00 0.00 3.67
2677 2775 4.060900 TCAGTGACAATGAAAGAGTGCTC 58.939 43.478 2.50 0.00 0.00 4.26
2752 2850 7.918076 ACCTATCAACTTTTGACCTCTCATTA 58.082 34.615 0.00 0.00 43.48 1.90
2776 2874 4.873827 TCTTCGGCACATTCTTACCATTAC 59.126 41.667 0.00 0.00 0.00 1.89
2804 2902 4.556233 CCAACAACGAGTATCTCACTTGA 58.444 43.478 0.00 0.00 40.72 3.02
2808 2906 2.000447 GGCCAACAACGAGTATCTCAC 59.000 52.381 0.00 0.00 0.00 3.51
2924 3022 4.085357 ACATGTTGTGTGCTCCTTTCTA 57.915 40.909 0.00 0.00 40.28 2.10
3003 3101 0.109597 CCGTCATTGTGCTTTGAGGC 60.110 55.000 0.00 0.00 0.00 4.70
3131 3229 4.709886 GCCATACATTTGTCTAAACCCCTT 59.290 41.667 0.00 0.00 0.00 3.95
3240 3338 5.796350 ATTCCGCTTAGTGTGTGTATTTC 57.204 39.130 0.00 0.00 0.00 2.17
3342 3440 3.059352 AGAAGTGTTCTTAAGCGGCAT 57.941 42.857 1.45 0.00 36.36 4.40
3760 3894 6.407202 TCCTTGTAGAATAACCTTCTTGAGC 58.593 40.000 0.00 0.00 0.00 4.26
4091 4253 5.300286 CCCTTCAGCTAACCATTTCCTTATG 59.700 44.000 0.00 0.00 0.00 1.90
4426 4612 1.869767 CACTGCCAAAGACTGTCAGAC 59.130 52.381 10.88 0.00 0.00 3.51
4536 4722 4.574013 CAGGTTCCTGCATATCTCTTTGAC 59.426 45.833 5.89 0.00 0.00 3.18
4746 4938 1.514873 GCTTGAGCATTTTCCGGCG 60.515 57.895 0.00 0.00 41.59 6.46
4936 5134 0.037697 ACAACTCAAGTATCGGCGCA 60.038 50.000 10.83 0.00 0.00 6.09
5029 6433 2.234661 TCTTGAGAACATCCATCAGCGT 59.765 45.455 0.00 0.00 0.00 5.07
5350 6769 2.158842 CCCTCTTCGATTTCCAGCTCAT 60.159 50.000 0.00 0.00 0.00 2.90
6203 11199 6.820470 CTCTAAAAGCAGTACATCTAGCAC 57.180 41.667 0.00 0.00 0.00 4.40
6277 11307 6.061022 TCCACAGATATTTAGAAACAGGCA 57.939 37.500 0.00 0.00 0.00 4.75
6278 11308 6.037610 CACTCCACAGATATTTAGAAACAGGC 59.962 42.308 0.00 0.00 0.00 4.85
6359 11389 6.262273 TCATCAGTAAACTTCAGAACCAAACC 59.738 38.462 0.00 0.00 0.00 3.27
6700 12160 4.931601 CCTGAAGAAACAGAATCGATGACA 59.068 41.667 0.00 0.00 39.94 3.58
6704 12164 4.081198 AGCTCCTGAAGAAACAGAATCGAT 60.081 41.667 0.00 0.00 39.94 3.59
6716 12176 1.169577 GACAGACGAGCTCCTGAAGA 58.830 55.000 22.22 0.00 34.65 2.87
6728 12188 2.350522 CAGGGGATGAAAAGACAGACG 58.649 52.381 0.00 0.00 0.00 4.18
6740 12200 3.850971 CATGTGAACATGCCAGGGGATG 61.851 54.545 17.07 17.07 45.92 3.51
6756 12216 6.709397 ACATGAGGATTCACTATTAGCATGTG 59.291 38.462 0.00 0.00 41.32 3.21
6767 12227 1.681166 GGCAGCACATGAGGATTCACT 60.681 52.381 0.00 0.00 35.83 3.41
6787 12247 3.521560 TGATAAGGAGTTGTAGCAAGCG 58.478 45.455 0.00 0.00 0.00 4.68
6803 12263 3.570125 CCAGAGCCGTATCAGTCTGATAA 59.430 47.826 21.58 6.12 40.64 1.75
6832 12303 4.401925 AGCTAATTGGAAGCACTTCACTT 58.598 39.130 12.21 5.05 42.62 3.16
6833 12304 4.026356 AGCTAATTGGAAGCACTTCACT 57.974 40.909 12.21 0.00 42.62 3.41
6836 12307 4.095632 GGAGAAGCTAATTGGAAGCACTTC 59.904 45.833 1.61 1.61 42.62 3.01
6845 12316 8.341892 AGAAACTTAAAGGAGAAGCTAATTGG 57.658 34.615 0.00 0.00 0.00 3.16
6849 12320 9.490379 CAAGTAGAAACTTAAAGGAGAAGCTAA 57.510 33.333 0.00 0.00 44.28 3.09
6850 12321 8.648693 ACAAGTAGAAACTTAAAGGAGAAGCTA 58.351 33.333 0.00 0.00 44.28 3.32
6852 12323 7.731882 ACAAGTAGAAACTTAAAGGAGAAGC 57.268 36.000 0.00 0.00 44.28 3.86
6853 12324 9.984190 AGTACAAGTAGAAACTTAAAGGAGAAG 57.016 33.333 0.00 0.00 44.28 2.85
6856 12327 7.656137 TGCAGTACAAGTAGAAACTTAAAGGAG 59.344 37.037 0.00 0.00 44.28 3.69
6891 12363 7.128331 CACCAAATCGAGATGCATAAAAGTAG 58.872 38.462 0.00 0.00 0.00 2.57
6898 12370 2.158769 AGCCACCAAATCGAGATGCATA 60.159 45.455 0.00 0.00 0.00 3.14
6905 12377 1.135575 GCAGAAAGCCACCAAATCGAG 60.136 52.381 0.00 0.00 37.23 4.04
6927 12399 6.716628 ACAAAATACATGGTGAACTCTGTCAT 59.283 34.615 0.00 0.00 0.00 3.06
6948 12420 5.481824 TGGGACCAAATACATATGCAACAAA 59.518 36.000 1.58 0.00 0.00 2.83
6955 12427 8.519799 AAGTTAACTGGGACCAAATACATATG 57.480 34.615 9.34 0.00 0.00 1.78
7040 12552 1.876156 AGCAAGAAGAAAAGCTGTCCG 59.124 47.619 0.00 0.00 35.72 4.79
7332 12884 3.926616 AGTACTTCAAACATCCACCGAG 58.073 45.455 0.00 0.00 0.00 4.63
7337 12889 5.306937 TCCTCAAGAGTACTTCAAACATCCA 59.693 40.000 0.00 0.00 33.70 3.41
7338 12890 5.639931 GTCCTCAAGAGTACTTCAAACATCC 59.360 44.000 0.00 0.00 33.70 3.51
7414 12966 5.376854 TGCTTGTCATCTTTTAAGCTTCC 57.623 39.130 0.00 0.00 44.30 3.46
7447 12999 5.534207 TTTCTTGCTTGTCATGGTTTCAT 57.466 34.783 0.00 0.00 0.00 2.57
7448 13000 4.998671 TTTCTTGCTTGTCATGGTTTCA 57.001 36.364 0.00 0.00 0.00 2.69
7449 13001 5.812127 AGTTTTTCTTGCTTGTCATGGTTTC 59.188 36.000 0.00 0.00 0.00 2.78
7450 13002 5.733676 AGTTTTTCTTGCTTGTCATGGTTT 58.266 33.333 0.00 0.00 0.00 3.27
7451 13003 5.343307 AGTTTTTCTTGCTTGTCATGGTT 57.657 34.783 0.00 0.00 0.00 3.67
7452 13004 6.265196 TCATAGTTTTTCTTGCTTGTCATGGT 59.735 34.615 0.00 0.00 0.00 3.55
7453 13005 6.680810 TCATAGTTTTTCTTGCTTGTCATGG 58.319 36.000 0.00 0.00 0.00 3.66
7454 13006 7.365741 ACTCATAGTTTTTCTTGCTTGTCATG 58.634 34.615 0.00 0.00 0.00 3.07
7455 13007 7.516198 ACTCATAGTTTTTCTTGCTTGTCAT 57.484 32.000 0.00 0.00 0.00 3.06
7456 13008 6.942532 ACTCATAGTTTTTCTTGCTTGTCA 57.057 33.333 0.00 0.00 0.00 3.58
7457 13009 7.173390 AGGTACTCATAGTTTTTCTTGCTTGTC 59.827 37.037 0.00 0.00 0.00 3.18
7458 13010 6.998673 AGGTACTCATAGTTTTTCTTGCTTGT 59.001 34.615 0.00 0.00 0.00 3.16
7459 13011 7.301054 CAGGTACTCATAGTTTTTCTTGCTTG 58.699 38.462 0.00 0.00 34.60 4.01
7460 13012 6.072452 GCAGGTACTCATAGTTTTTCTTGCTT 60.072 38.462 0.00 0.00 34.60 3.91
7461 13013 5.412904 GCAGGTACTCATAGTTTTTCTTGCT 59.587 40.000 0.00 0.00 34.60 3.91
7462 13014 5.181245 TGCAGGTACTCATAGTTTTTCTTGC 59.819 40.000 0.00 0.00 34.60 4.01
7463 13015 6.801539 TGCAGGTACTCATAGTTTTTCTTG 57.198 37.500 0.00 0.00 34.60 3.02
7464 13016 7.665559 TCATTGCAGGTACTCATAGTTTTTCTT 59.334 33.333 0.00 0.00 34.60 2.52
7465 13017 7.168219 TCATTGCAGGTACTCATAGTTTTTCT 58.832 34.615 0.00 0.00 34.60 2.52
7466 13018 7.377766 TCATTGCAGGTACTCATAGTTTTTC 57.622 36.000 0.00 0.00 34.60 2.29
7467 13019 7.759489 TTCATTGCAGGTACTCATAGTTTTT 57.241 32.000 0.00 0.00 34.60 1.94
7468 13020 7.759489 TTTCATTGCAGGTACTCATAGTTTT 57.241 32.000 0.00 0.00 34.60 2.43
7469 13021 7.944729 ATTTCATTGCAGGTACTCATAGTTT 57.055 32.000 0.00 0.00 34.60 2.66
7470 13022 7.611467 TCAATTTCATTGCAGGTACTCATAGTT 59.389 33.333 0.00 0.00 40.05 2.24
7471 13023 7.112122 TCAATTTCATTGCAGGTACTCATAGT 58.888 34.615 0.00 0.00 40.05 2.12
7472 13024 7.558161 TCAATTTCATTGCAGGTACTCATAG 57.442 36.000 0.00 0.00 40.05 2.23
7473 13025 7.148086 GGTTCAATTTCATTGCAGGTACTCATA 60.148 37.037 0.00 0.00 40.05 2.15
7474 13026 6.350445 GGTTCAATTTCATTGCAGGTACTCAT 60.350 38.462 0.00 0.00 40.05 2.90
7475 13027 5.048083 GGTTCAATTTCATTGCAGGTACTCA 60.048 40.000 0.00 0.00 40.05 3.41
7476 13028 5.402398 GGTTCAATTTCATTGCAGGTACTC 58.598 41.667 0.00 0.00 40.05 2.59
7477 13029 4.082787 CGGTTCAATTTCATTGCAGGTACT 60.083 41.667 0.00 0.00 40.05 2.73
7497 13049 5.457140 CAATTAATGTGTTGCAAGTACGGT 58.543 37.500 0.00 0.00 0.00 4.83
7508 13060 6.397272 CACAATGGCTACCAATTAATGTGTT 58.603 36.000 0.00 0.00 36.95 3.32
7563 13115 1.201429 AGACAGGGGCTCGGAATGTT 61.201 55.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.