Multiple sequence alignment - TraesCS7D01G022000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G022000 chr7D 100.000 3343 0 0 1 3343 10475726 10472384 0.000000e+00 6174.0
1 TraesCS7D01G022000 chr7D 81.979 1304 173 35 2078 3343 10036114 10037393 0.000000e+00 1050.0
2 TraesCS7D01G022000 chr7D 80.220 1456 216 42 1942 3343 10482564 10481127 0.000000e+00 1027.0
3 TraesCS7D01G022000 chr7D 76.094 2217 361 91 830 2986 9088681 9090788 0.000000e+00 1002.0
4 TraesCS7D01G022000 chr7D 77.335 803 123 34 872 1663 10483588 10482834 1.430000e-113 420.0
5 TraesCS7D01G022000 chr7D 78.451 594 91 26 1028 1608 10105290 10104721 1.480000e-93 353.0
6 TraesCS7D01G022000 chr7D 100.000 173 0 0 276 448 10484110 10483938 1.500000e-83 320.0
7 TraesCS7D01G022000 chr7D 76.149 457 60 29 2661 3078 9133644 9134090 9.460000e-46 195.0
8 TraesCS7D01G022000 chr7D 86.441 118 6 4 357 474 10034990 10035097 1.630000e-23 121.0
9 TraesCS7D01G022000 chr4A 77.991 2558 396 94 859 3343 729138745 729141208 0.000000e+00 1450.0
10 TraesCS7D01G022000 chr4A 78.032 2490 383 90 927 3343 729742418 729744816 0.000000e+00 1417.0
11 TraesCS7D01G022000 chr4A 77.328 2373 404 76 1028 3343 729534151 729531856 0.000000e+00 1279.0
12 TraesCS7D01G022000 chr4A 79.589 1460 224 43 1939 3340 729858595 729860038 0.000000e+00 977.0
13 TraesCS7D01G022000 chr4A 80.200 1399 198 41 1986 3343 729086304 729084944 0.000000e+00 976.0
14 TraesCS7D01G022000 chr4A 79.662 1421 206 46 1964 3343 728827768 728829146 0.000000e+00 946.0
15 TraesCS7D01G022000 chr4A 79.030 1340 220 31 2052 3343 718930710 718929384 0.000000e+00 861.0
16 TraesCS7D01G022000 chr4A 76.409 1721 322 57 995 2671 728758439 728760119 0.000000e+00 852.0
17 TraesCS7D01G022000 chr4A 77.756 1515 248 52 872 2375 728458201 728456765 0.000000e+00 848.0
18 TraesCS7D01G022000 chr4A 78.499 1372 219 46 2017 3338 729703665 729705010 0.000000e+00 830.0
19 TraesCS7D01G022000 chr4A 79.293 792 124 24 989 1771 729681016 729681776 4.940000e-143 518.0
20 TraesCS7D01G022000 chr4A 78.854 785 120 27 997 1771 718931783 718931035 3.880000e-134 488.0
21 TraesCS7D01G022000 chr4A 77.822 762 126 25 908 1663 728433896 728433172 6.630000e-117 431.0
22 TraesCS7D01G022000 chr4A 88.214 280 27 4 1 275 729817750 729818028 2.490000e-86 329.0
23 TraesCS7D01G022000 chr4A 81.188 404 65 7 1237 1636 729857955 729858351 6.960000e-82 315.0
24 TraesCS7D01G022000 chr4A 78.378 481 83 14 1234 1699 728518571 728519045 3.260000e-75 292.0
25 TraesCS7D01G022000 chr4A 83.987 306 47 2 1230 1535 729480511 729480208 3.260000e-75 292.0
26 TraesCS7D01G022000 chr4A 94.054 185 6 1 276 460 728458720 728458541 3.290000e-70 276.0
27 TraesCS7D01G022000 chr4A 82.026 306 48 5 2990 3288 729683037 729683342 1.540000e-63 254.0
28 TraesCS7D01G022000 chr4A 88.776 196 18 3 276 471 729138106 729138297 1.550000e-58 237.0
29 TraesCS7D01G022000 chr4A 90.110 182 13 1 293 474 728434372 728434196 7.210000e-57 231.0
30 TraesCS7D01G022000 chr4A 88.950 181 15 4 276 456 729680505 729680680 5.620000e-53 219.0
31 TraesCS7D01G022000 chr4A 88.462 182 13 7 296 474 718932328 718932152 2.610000e-51 213.0
32 TraesCS7D01G022000 chr4A 85.366 205 28 2 1230 1434 728741841 728742043 9.400000e-51 211.0
33 TraesCS7D01G022000 chr4A 75.542 507 66 26 2861 3343 729048789 729048317 2.630000e-46 196.0
34 TraesCS7D01G022000 chr4A 84.066 182 26 1 999 1177 728518368 728518549 4.430000e-39 172.0
35 TraesCS7D01G022000 chr7A 79.075 1448 239 35 1948 3343 9329540 9330975 0.000000e+00 937.0
36 TraesCS7D01G022000 chr1B 85.135 74 5 6 102 173 608856106 608856037 1.660000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G022000 chr7D 10472384 10475726 3342 True 6174.000000 6174 100.000000 1 3343 1 chr7D.!!$R2 3342
1 TraesCS7D01G022000 chr7D 9088681 9090788 2107 False 1002.000000 1002 76.094000 830 2986 1 chr7D.!!$F1 2156
2 TraesCS7D01G022000 chr7D 10481127 10484110 2983 True 589.000000 1027 85.851667 276 3343 3 chr7D.!!$R3 3067
3 TraesCS7D01G022000 chr7D 10034990 10037393 2403 False 585.500000 1050 84.210000 357 3343 2 chr7D.!!$F3 2986
4 TraesCS7D01G022000 chr7D 10104721 10105290 569 True 353.000000 353 78.451000 1028 1608 1 chr7D.!!$R1 580
5 TraesCS7D01G022000 chr4A 729742418 729744816 2398 False 1417.000000 1417 78.032000 927 3343 1 chr4A.!!$F5 2416
6 TraesCS7D01G022000 chr4A 729531856 729534151 2295 True 1279.000000 1279 77.328000 1028 3343 1 chr4A.!!$R4 2315
7 TraesCS7D01G022000 chr4A 729084944 729086304 1360 True 976.000000 976 80.200000 1986 3343 1 chr4A.!!$R2 1357
8 TraesCS7D01G022000 chr4A 728827768 728829146 1378 False 946.000000 946 79.662000 1964 3343 1 chr4A.!!$F3 1379
9 TraesCS7D01G022000 chr4A 728758439 728760119 1680 False 852.000000 852 76.409000 995 2671 1 chr4A.!!$F2 1676
10 TraesCS7D01G022000 chr4A 729138106 729141208 3102 False 843.500000 1450 83.383500 276 3343 2 chr4A.!!$F8 3067
11 TraesCS7D01G022000 chr4A 729703665 729705010 1345 False 830.000000 830 78.499000 2017 3338 1 chr4A.!!$F4 1321
12 TraesCS7D01G022000 chr4A 729857955 729860038 2083 False 646.000000 977 80.388500 1237 3340 2 chr4A.!!$F10 2103
13 TraesCS7D01G022000 chr4A 728456765 728458720 1955 True 562.000000 848 85.905000 276 2375 2 chr4A.!!$R7 2099
14 TraesCS7D01G022000 chr4A 718929384 718932328 2944 True 520.666667 861 82.115333 296 3343 3 chr4A.!!$R5 3047
15 TraesCS7D01G022000 chr4A 728433172 728434372 1200 True 331.000000 431 83.966000 293 1663 2 chr4A.!!$R6 1370
16 TraesCS7D01G022000 chr4A 729680505 729683342 2837 False 330.333333 518 83.423000 276 3288 3 chr4A.!!$F9 3012
17 TraesCS7D01G022000 chr4A 728518368 728519045 677 False 232.000000 292 81.222000 999 1699 2 chr4A.!!$F7 700
18 TraesCS7D01G022000 chr7A 9329540 9330975 1435 False 937.000000 937 79.075000 1948 3343 1 chr7A.!!$F1 1395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 1004 0.035598 TCAGACGATTTTTGGCCCGA 59.964 50.0 0.0 0.0 0.00 5.14 F
1856 2292 0.106335 CCGAGCATCTCAATCTGCCT 59.894 55.0 0.0 0.0 39.22 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 2688 0.109086 ACTCGTGATCCACTGAAGCG 60.109 55.0 0.00 0.00 31.34 4.68 R
3052 3725 0.254178 CCATGTAGCTGGCCTGTTCT 59.746 55.0 11.69 3.36 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.797693 TGCAACAGCAAAAACATGATTG 57.202 36.364 0.00 2.99 34.85 2.67
25 26 4.190001 TGCAACAGCAAAAACATGATTGT 58.810 34.783 0.00 0.00 34.48 2.71
26 27 4.034163 TGCAACAGCAAAAACATGATTGTG 59.966 37.500 0.00 0.00 33.73 3.33
27 28 4.553156 GCAACAGCAAAAACATGATTGTGG 60.553 41.667 7.88 5.52 35.83 4.17
28 29 4.669206 ACAGCAAAAACATGATTGTGGA 57.331 36.364 7.88 0.00 35.83 4.02
29 30 5.217978 ACAGCAAAAACATGATTGTGGAT 57.782 34.783 7.88 0.00 35.83 3.41
30 31 6.343716 ACAGCAAAAACATGATTGTGGATA 57.656 33.333 7.88 0.00 35.83 2.59
31 32 6.757237 ACAGCAAAAACATGATTGTGGATAA 58.243 32.000 7.88 0.00 35.83 1.75
32 33 7.215789 ACAGCAAAAACATGATTGTGGATAAA 58.784 30.769 7.88 0.00 35.83 1.40
33 34 7.714377 ACAGCAAAAACATGATTGTGGATAAAA 59.286 29.630 7.88 0.00 35.83 1.52
34 35 8.557864 CAGCAAAAACATGATTGTGGATAAAAA 58.442 29.630 7.88 0.00 35.83 1.94
35 36 8.558700 AGCAAAAACATGATTGTGGATAAAAAC 58.441 29.630 7.88 0.00 35.83 2.43
36 37 8.341173 GCAAAAACATGATTGTGGATAAAAACA 58.659 29.630 7.88 0.00 35.83 2.83
40 41 9.829507 AAACATGATTGTGGATAAAAACAAAGA 57.170 25.926 0.00 0.00 39.57 2.52
41 42 9.829507 AACATGATTGTGGATAAAAACAAAGAA 57.170 25.926 0.00 0.00 39.57 2.52
42 43 9.260002 ACATGATTGTGGATAAAAACAAAGAAC 57.740 29.630 0.00 0.00 39.57 3.01
43 44 9.480053 CATGATTGTGGATAAAAACAAAGAACT 57.520 29.630 0.00 0.00 39.57 3.01
142 143 7.773489 TCATGAATTAGGAAAATGTTCACCA 57.227 32.000 0.00 0.00 35.25 4.17
143 144 8.365060 TCATGAATTAGGAAAATGTTCACCAT 57.635 30.769 0.00 0.00 35.25 3.55
144 145 8.814931 TCATGAATTAGGAAAATGTTCACCATT 58.185 29.630 0.00 0.00 45.81 3.16
156 157 7.920160 AATGTTCACCATTTCAAAAACTGTT 57.080 28.000 0.00 0.00 41.01 3.16
157 158 6.959671 TGTTCACCATTTCAAAAACTGTTC 57.040 33.333 0.00 0.00 0.00 3.18
158 159 6.459066 TGTTCACCATTTCAAAAACTGTTCA 58.541 32.000 0.00 0.00 0.00 3.18
159 160 6.367422 TGTTCACCATTTCAAAAACTGTTCAC 59.633 34.615 0.00 0.00 0.00 3.18
160 161 6.030548 TCACCATTTCAAAAACTGTTCACA 57.969 33.333 0.00 0.00 0.00 3.58
161 162 6.459066 TCACCATTTCAAAAACTGTTCACAA 58.541 32.000 0.00 0.00 0.00 3.33
162 163 6.931281 TCACCATTTCAAAAACTGTTCACAAA 59.069 30.769 0.00 0.00 0.00 2.83
163 164 7.605691 TCACCATTTCAAAAACTGTTCACAAAT 59.394 29.630 0.00 0.00 0.00 2.32
164 165 8.235905 CACCATTTCAAAAACTGTTCACAAATT 58.764 29.630 0.00 0.00 0.00 1.82
165 166 8.450180 ACCATTTCAAAAACTGTTCACAAATTC 58.550 29.630 0.00 0.00 0.00 2.17
166 167 8.449397 CCATTTCAAAAACTGTTCACAAATTCA 58.551 29.630 0.00 0.00 0.00 2.57
167 168 9.823098 CATTTCAAAAACTGTTCACAAATTCAA 57.177 25.926 0.00 0.00 0.00 2.69
177 178 9.991388 ACTGTTCACAAATTCAAAAATTTCATG 57.009 25.926 0.00 0.00 41.96 3.07
215 216 8.219546 TGTTCACTAACATCAAAGAATGTTCA 57.780 30.769 5.59 0.00 40.69 3.18
216 217 8.128582 TGTTCACTAACATCAAAGAATGTTCAC 58.871 33.333 5.59 0.00 40.69 3.18
217 218 7.800155 TCACTAACATCAAAGAATGTTCACA 57.200 32.000 5.59 0.00 41.79 3.58
218 219 8.394971 TCACTAACATCAAAGAATGTTCACAT 57.605 30.769 5.59 0.00 41.79 3.21
219 220 8.291740 TCACTAACATCAAAGAATGTTCACATG 58.708 33.333 5.59 0.00 41.79 3.21
220 221 8.077991 CACTAACATCAAAGAATGTTCACATGT 58.922 33.333 5.59 0.00 41.79 3.21
221 222 8.632679 ACTAACATCAAAGAATGTTCACATGTT 58.367 29.630 0.00 0.00 41.79 2.71
222 223 9.467258 CTAACATCAAAGAATGTTCACATGTTT 57.533 29.630 0.00 0.00 41.79 2.83
224 225 9.814899 AACATCAAAGAATGTTCACATGTTTAA 57.185 25.926 0.00 0.00 41.79 1.52
225 226 9.814899 ACATCAAAGAATGTTCACATGTTTAAA 57.185 25.926 0.00 0.00 36.47 1.52
236 237 9.482627 TGTTCACATGTTTAAAAAGTTTTCACT 57.517 25.926 0.32 0.00 33.11 3.41
465 469 5.278120 CGTCCCCTGGTTTTTGTTTAGTTAG 60.278 44.000 0.00 0.00 0.00 2.34
466 470 5.595542 GTCCCCTGGTTTTTGTTTAGTTAGT 59.404 40.000 0.00 0.00 0.00 2.24
467 471 5.595133 TCCCCTGGTTTTTGTTTAGTTAGTG 59.405 40.000 0.00 0.00 0.00 2.74
468 472 5.286438 CCCTGGTTTTTGTTTAGTTAGTGC 58.714 41.667 0.00 0.00 0.00 4.40
469 473 5.068591 CCCTGGTTTTTGTTTAGTTAGTGCT 59.931 40.000 0.00 0.00 0.00 4.40
470 474 6.263617 CCCTGGTTTTTGTTTAGTTAGTGCTA 59.736 38.462 0.00 0.00 0.00 3.49
471 475 7.360361 CCTGGTTTTTGTTTAGTTAGTGCTAG 58.640 38.462 0.00 0.00 0.00 3.42
472 476 7.227910 CCTGGTTTTTGTTTAGTTAGTGCTAGA 59.772 37.037 0.00 0.00 0.00 2.43
473 477 8.685838 TGGTTTTTGTTTAGTTAGTGCTAGAT 57.314 30.769 0.00 0.00 0.00 1.98
474 478 9.127277 TGGTTTTTGTTTAGTTAGTGCTAGATT 57.873 29.630 0.00 0.00 0.00 2.40
475 479 9.961265 GGTTTTTGTTTAGTTAGTGCTAGATTT 57.039 29.630 0.00 0.00 0.00 2.17
480 484 8.331730 TGTTTAGTTAGTGCTAGATTTTTCCC 57.668 34.615 0.00 0.00 0.00 3.97
481 485 8.161425 TGTTTAGTTAGTGCTAGATTTTTCCCT 58.839 33.333 0.00 0.00 0.00 4.20
482 486 9.011095 GTTTAGTTAGTGCTAGATTTTTCCCTT 57.989 33.333 0.00 0.00 0.00 3.95
486 490 9.582648 AGTTAGTGCTAGATTTTTCCCTTAAAA 57.417 29.630 0.00 0.00 35.24 1.52
490 494 8.870116 AGTGCTAGATTTTTCCCTTAAAATTGT 58.130 29.630 0.00 0.00 37.72 2.71
491 495 9.489084 GTGCTAGATTTTTCCCTTAAAATTGTT 57.511 29.630 0.00 0.00 37.72 2.83
492 496 9.487790 TGCTAGATTTTTCCCTTAAAATTGTTG 57.512 29.630 0.00 0.00 37.72 3.33
493 497 8.935844 GCTAGATTTTTCCCTTAAAATTGTTGG 58.064 33.333 0.00 0.00 37.72 3.77
494 498 9.996554 CTAGATTTTTCCCTTAAAATTGTTGGT 57.003 29.630 0.00 0.00 37.72 3.67
496 500 9.119418 AGATTTTTCCCTTAAAATTGTTGGTTG 57.881 29.630 0.00 0.00 37.72 3.77
506 510 5.806654 AAATTGTTGGTTGGTGCTAGATT 57.193 34.783 0.00 0.00 0.00 2.40
524 529 9.862149 TGCTAGATTCGTATCCTCCATATATAA 57.138 33.333 0.00 0.00 0.00 0.98
546 553 6.910259 AAGTAGATCTAATTTGGGGTTCCT 57.090 37.500 9.59 0.00 0.00 3.36
586 701 5.437289 TGTTGTTGCTACAAATGGAGAAG 57.563 39.130 15.28 0.00 45.33 2.85
597 713 3.790089 AATGGAGAAGAAAGGTCCGTT 57.210 42.857 0.00 0.00 35.19 4.44
598 714 2.543777 TGGAGAAGAAAGGTCCGTTG 57.456 50.000 0.00 0.00 32.51 4.10
625 741 5.842907 TCTTTCAGACTTTTCAGATCGACA 58.157 37.500 0.00 0.00 0.00 4.35
671 796 9.047947 AGATATATACCACAGTATTTCTTCCCC 57.952 37.037 0.00 0.00 39.88 4.81
673 798 5.632034 ATACCACAGTATTTCTTCCCCTC 57.368 43.478 0.00 0.00 35.58 4.30
695 955 3.544834 CGCAATCGCTATTCTTCAGTTGG 60.545 47.826 0.00 0.00 35.30 3.77
697 957 3.550437 ATCGCTATTCTTCAGTTGGCT 57.450 42.857 0.00 0.00 0.00 4.75
698 958 2.621338 TCGCTATTCTTCAGTTGGCTG 58.379 47.619 0.00 0.00 43.87 4.85
714 982 5.798125 TTGGCTGACAACAAATATTTGGA 57.202 34.783 27.43 8.83 42.34 3.53
721 989 7.814107 GCTGACAACAAATATTTGGATTTCAGA 59.186 33.333 31.31 13.74 42.34 3.27
725 993 8.522830 ACAACAAATATTTGGATTTCAGACGAT 58.477 29.630 27.43 3.68 42.34 3.73
731 999 8.931385 ATATTTGGATTTCAGACGATTTTTGG 57.069 30.769 0.00 0.00 0.00 3.28
732 1000 4.173036 TGGATTTCAGACGATTTTTGGC 57.827 40.909 0.00 0.00 0.00 4.52
733 1001 3.056891 TGGATTTCAGACGATTTTTGGCC 60.057 43.478 0.00 0.00 0.00 5.36
734 1002 3.511699 GATTTCAGACGATTTTTGGCCC 58.488 45.455 0.00 0.00 0.00 5.80
735 1003 0.878416 TTCAGACGATTTTTGGCCCG 59.122 50.000 0.00 0.00 0.00 6.13
736 1004 0.035598 TCAGACGATTTTTGGCCCGA 59.964 50.000 0.00 0.00 0.00 5.14
737 1005 0.878416 CAGACGATTTTTGGCCCGAA 59.122 50.000 0.00 0.00 0.00 4.30
738 1006 1.135689 CAGACGATTTTTGGCCCGAAG 60.136 52.381 0.00 0.00 0.00 3.79
739 1007 0.456142 GACGATTTTTGGCCCGAAGC 60.456 55.000 0.00 0.00 42.60 3.86
748 1016 3.818787 GCCCGAAGCCGTAGACGA 61.819 66.667 3.07 0.00 43.02 4.20
749 1017 2.879907 CCCGAAGCCGTAGACGAA 59.120 61.111 3.07 0.00 43.02 3.85
750 1018 1.226603 CCCGAAGCCGTAGACGAAG 60.227 63.158 3.07 0.00 43.02 3.79
786 1054 2.125350 GCCGGAGCCAGAGTTCTG 60.125 66.667 5.05 2.09 43.40 3.02
794 1062 2.743718 CAGAGTTCTGGTGCGGGT 59.256 61.111 1.09 0.00 40.20 5.28
795 1063 1.071471 CAGAGTTCTGGTGCGGGTT 59.929 57.895 1.09 0.00 40.20 4.11
796 1064 0.951040 CAGAGTTCTGGTGCGGGTTC 60.951 60.000 1.09 0.00 40.20 3.62
797 1065 2.027625 GAGTTCTGGTGCGGGTTCG 61.028 63.158 0.00 0.00 39.81 3.95
798 1066 3.047877 GTTCTGGTGCGGGTTCGG 61.048 66.667 0.00 0.00 36.79 4.30
799 1067 4.323477 TTCTGGTGCGGGTTCGGG 62.323 66.667 0.00 0.00 36.79 5.14
804 1072 4.419921 GTGCGGGTTCGGGGGATT 62.420 66.667 0.00 0.00 36.79 3.01
805 1073 3.653078 TGCGGGTTCGGGGGATTT 61.653 61.111 0.00 0.00 36.79 2.17
806 1074 3.138128 GCGGGTTCGGGGGATTTG 61.138 66.667 0.00 0.00 36.79 2.32
807 1075 3.138128 CGGGTTCGGGGGATTTGC 61.138 66.667 0.00 0.00 0.00 3.68
808 1076 2.758327 GGGTTCGGGGGATTTGCC 60.758 66.667 0.00 0.00 0.00 4.52
809 1077 3.138128 GGTTCGGGGGATTTGCCG 61.138 66.667 0.00 0.00 37.63 5.69
810 1078 3.138128 GTTCGGGGGATTTGCCGG 61.138 66.667 0.00 0.00 37.63 6.13
825 1093 3.788766 CGGCGCCGAAGAAAGTGG 61.789 66.667 44.86 10.04 42.83 4.00
826 1094 3.431725 GGCGCCGAAGAAAGTGGG 61.432 66.667 12.58 0.00 0.00 4.61
827 1095 4.103103 GCGCCGAAGAAAGTGGGC 62.103 66.667 0.00 0.00 42.14 5.36
828 1096 2.668212 CGCCGAAGAAAGTGGGCA 60.668 61.111 1.55 0.00 45.85 5.36
829 1097 2.680913 CGCCGAAGAAAGTGGGCAG 61.681 63.158 1.55 0.00 45.85 4.85
830 1098 2.335712 GCCGAAGAAAGTGGGCAGG 61.336 63.158 0.00 0.00 44.91 4.85
831 1099 1.675641 CCGAAGAAAGTGGGCAGGG 60.676 63.158 0.00 0.00 0.00 4.45
832 1100 1.675641 CGAAGAAAGTGGGCAGGGG 60.676 63.158 0.00 0.00 0.00 4.79
833 1101 1.767692 GAAGAAAGTGGGCAGGGGA 59.232 57.895 0.00 0.00 0.00 4.81
834 1102 0.609406 GAAGAAAGTGGGCAGGGGAC 60.609 60.000 0.00 0.00 0.00 4.46
835 1103 1.068352 AAGAAAGTGGGCAGGGGACT 61.068 55.000 0.00 0.00 46.44 3.85
857 1125 2.104331 GCGAGCGGAGGAAATCGA 59.896 61.111 0.00 0.00 37.35 3.59
862 1130 0.173708 AGCGGAGGAAATCGACTGAC 59.826 55.000 0.00 0.00 0.00 3.51
866 1134 2.385803 GGAGGAAATCGACTGACCCTA 58.614 52.381 0.00 0.00 0.00 3.53
903 1171 6.726764 GGAGACTGAATAATACTAGGTCCCAT 59.273 42.308 0.00 0.00 0.00 4.00
907 1175 9.274206 GACTGAATAATACTAGGTCCCATTTTC 57.726 37.037 0.00 0.00 0.00 2.29
908 1176 9.004231 ACTGAATAATACTAGGTCCCATTTTCT 57.996 33.333 0.00 0.00 0.00 2.52
909 1177 9.853177 CTGAATAATACTAGGTCCCATTTTCTT 57.147 33.333 0.00 0.00 0.00 2.52
910 1178 9.847224 TGAATAATACTAGGTCCCATTTTCTTC 57.153 33.333 0.00 0.00 0.00 2.87
914 1183 7.757242 ATACTAGGTCCCATTTTCTTCTTCT 57.243 36.000 0.00 0.00 0.00 2.85
915 1184 5.810095 ACTAGGTCCCATTTTCTTCTTCTG 58.190 41.667 0.00 0.00 0.00 3.02
925 1194 6.587608 CCATTTTCTTCTTCTGTATTTGCACC 59.412 38.462 0.00 0.00 0.00 5.01
951 1222 6.848451 ACGGCTAAAACAACAGTAATTATGG 58.152 36.000 0.00 0.00 0.00 2.74
977 1248 8.946085 GTATGATTCAGGAGAATTAACACACAA 58.054 33.333 0.00 0.00 44.30 3.33
978 1249 7.202016 TGATTCAGGAGAATTAACACACAAC 57.798 36.000 0.00 0.00 44.30 3.32
979 1250 6.998074 TGATTCAGGAGAATTAACACACAACT 59.002 34.615 0.00 0.00 44.30 3.16
980 1251 7.502226 TGATTCAGGAGAATTAACACACAACTT 59.498 33.333 0.00 0.00 44.30 2.66
982 1253 7.259290 TCAGGAGAATTAACACACAACTTTC 57.741 36.000 0.00 0.00 0.00 2.62
983 1254 7.054124 TCAGGAGAATTAACACACAACTTTCT 58.946 34.615 0.00 0.00 0.00 2.52
984 1255 7.556275 TCAGGAGAATTAACACACAACTTTCTT 59.444 33.333 0.00 0.00 0.00 2.52
985 1256 8.836413 CAGGAGAATTAACACACAACTTTCTTA 58.164 33.333 0.00 0.00 0.00 2.10
986 1257 9.057089 AGGAGAATTAACACACAACTTTCTTAG 57.943 33.333 0.00 0.00 0.00 2.18
987 1258 9.052759 GGAGAATTAACACACAACTTTCTTAGA 57.947 33.333 0.00 0.00 0.00 2.10
1014 1288 2.420138 CGAGATGACGGACAGGGAT 58.580 57.895 0.00 0.00 0.00 3.85
1026 1303 0.534412 ACAGGGATCAAGACAGCGAG 59.466 55.000 0.00 0.00 0.00 5.03
1073 1350 2.110734 GATGAAAGCGCGGATCCAGC 62.111 60.000 18.54 18.54 0.00 4.85
1087 1364 0.543410 TCCAGCCGACCTACCTTTCA 60.543 55.000 0.00 0.00 0.00 2.69
1116 1393 4.739793 TCAAGTCCATCACAGGGAATTTT 58.260 39.130 0.00 0.00 40.45 1.82
1171 1448 2.289882 GGGGTGGTCTACAAGGTAACAC 60.290 54.545 0.00 0.00 41.41 3.32
1185 1464 0.692476 TAACACAGGCACAGGCAGAT 59.308 50.000 0.00 0.00 43.71 2.90
1210 1513 7.405292 TCCTCCACTCTGAAATGAATAACAAT 58.595 34.615 0.00 0.00 0.00 2.71
1211 1514 7.554118 TCCTCCACTCTGAAATGAATAACAATC 59.446 37.037 0.00 0.00 0.00 2.67
1215 1518 8.733458 CCACTCTGAAATGAATAACAATCAGAA 58.267 33.333 14.59 5.16 45.62 3.02
1280 1602 3.673599 GGAGTGCTTCCAAGTGGC 58.326 61.111 3.32 0.00 46.01 5.01
1281 1603 1.073897 GGAGTGCTTCCAAGTGGCT 59.926 57.895 3.32 0.00 46.01 4.75
1286 1608 2.195567 GCTTCCAAGTGGCTGCACA 61.196 57.895 0.50 0.00 34.77 4.57
1305 1627 1.135575 CAATTGCCGTGAAGAAGCTCC 60.136 52.381 0.00 0.00 0.00 4.70
1312 1634 2.266554 CGTGAAGAAGCTCCATGAGAC 58.733 52.381 0.00 0.00 0.00 3.36
1418 1740 2.260743 TGCTCTGAGACGCAGCAG 59.739 61.111 9.28 1.92 44.52 4.24
1419 1741 3.187414 GCTCTGAGACGCAGCAGC 61.187 66.667 9.28 12.24 44.52 5.25
1427 1749 2.435586 ACGCAGCAGCTGATGGTC 60.436 61.111 31.37 15.91 37.60 4.02
1431 1753 4.479993 AGCAGCTGATGGTCCCGC 62.480 66.667 20.43 0.00 33.17 6.13
1434 1756 3.474570 AGCTGATGGTCCCGCTCC 61.475 66.667 0.00 0.00 0.00 4.70
1455 1777 0.821711 CGGAAACCTTGTCTGGGCAA 60.822 55.000 0.00 0.00 0.00 4.52
1456 1778 0.961753 GGAAACCTTGTCTGGGCAAG 59.038 55.000 7.85 7.85 43.88 4.01
1493 1815 1.517257 CTGCTTCGAGTACCTGCCG 60.517 63.158 0.00 0.00 0.00 5.69
1535 1857 4.171878 TCTCTCCGGTAGAATCACATCT 57.828 45.455 0.00 0.00 32.46 2.90
1555 1878 2.620585 CTGCCTTATAGCTTTCCTTGCC 59.379 50.000 0.00 0.00 0.00 4.52
1560 1883 4.035675 CCTTATAGCTTTCCTTGCCTTTCG 59.964 45.833 0.00 0.00 0.00 3.46
1563 1886 2.087646 AGCTTTCCTTGCCTTTCGATC 58.912 47.619 0.00 0.00 0.00 3.69
1564 1887 1.133216 GCTTTCCTTGCCTTTCGATCC 59.867 52.381 0.00 0.00 0.00 3.36
1575 1925 5.056480 TGCCTTTCGATCCATATTGTAGTG 58.944 41.667 0.00 0.00 0.00 2.74
1577 1927 4.150627 CCTTTCGATCCATATTGTAGTGCG 59.849 45.833 0.00 0.00 0.00 5.34
1582 1932 3.878160 TCCATATTGTAGTGCGTGTCA 57.122 42.857 0.00 0.00 0.00 3.58
1598 1949 4.498345 GCGTGTCAACCAACTTTAATCCAA 60.498 41.667 0.00 0.00 0.00 3.53
1636 1988 2.575532 TGCCACTCTTCTGAACTTTGG 58.424 47.619 3.20 3.20 0.00 3.28
1641 1993 5.335191 GCCACTCTTCTGAACTTTGGTAATG 60.335 44.000 7.76 0.00 0.00 1.90
1642 1994 5.765182 CCACTCTTCTGAACTTTGGTAATGT 59.235 40.000 0.00 0.00 0.00 2.71
1712 2133 8.967918 ACTACAGTATATGCACTCTTCTGTTTA 58.032 33.333 15.00 2.67 36.36 2.01
1716 2137 7.436673 CAGTATATGCACTCTTCTGTTTAGACC 59.563 40.741 0.00 0.00 31.21 3.85
1723 2144 7.387948 TGCACTCTTCTGTTTAGACCTATTTTC 59.612 37.037 0.00 0.00 31.21 2.29
1746 2168 5.426509 TCATTTCTCATCCTCTTTGCCTCTA 59.573 40.000 0.00 0.00 0.00 2.43
1748 2170 5.762179 TTCTCATCCTCTTTGCCTCTAAA 57.238 39.130 0.00 0.00 0.00 1.85
1751 2176 5.249393 TCTCATCCTCTTTGCCTCTAAAAGT 59.751 40.000 0.00 0.00 36.29 2.66
1755 2180 6.875972 TCCTCTTTGCCTCTAAAAGTAGAT 57.124 37.500 0.00 0.00 35.76 1.98
1792 2217 5.856126 TGTAAGGAAAACATAAGTGCTCG 57.144 39.130 0.00 0.00 0.00 5.03
1819 2255 5.069648 TCTGCTGTGGATAGACCTTAATCAG 59.930 44.000 0.00 0.00 39.86 2.90
1838 2274 9.990360 TTAATCAGGTAACCAAAAGAAAATTCC 57.010 29.630 0.00 0.00 37.17 3.01
1856 2292 0.106335 CCGAGCATCTCAATCTGCCT 59.894 55.000 0.00 0.00 39.22 4.75
1859 2295 2.295629 CGAGCATCTCAATCTGCCTAGA 59.704 50.000 0.00 0.00 39.22 2.43
1863 2299 4.102838 AGCATCTCAATCTGCCTAGACAAT 59.897 41.667 0.00 0.00 39.22 2.71
1864 2300 5.306419 AGCATCTCAATCTGCCTAGACAATA 59.694 40.000 0.00 0.00 39.22 1.90
1865 2301 5.994054 GCATCTCAATCTGCCTAGACAATAA 59.006 40.000 0.00 0.00 35.34 1.40
1866 2302 6.484643 GCATCTCAATCTGCCTAGACAATAAA 59.515 38.462 0.00 0.00 35.34 1.40
1867 2303 7.174599 GCATCTCAATCTGCCTAGACAATAAAT 59.825 37.037 0.00 0.00 35.34 1.40
1868 2304 9.716531 CATCTCAATCTGCCTAGACAATAAATA 57.283 33.333 0.00 0.00 35.34 1.40
1870 2306 9.716531 TCTCAATCTGCCTAGACAATAAATATG 57.283 33.333 0.00 0.00 35.34 1.78
1871 2307 9.499479 CTCAATCTGCCTAGACAATAAATATGT 57.501 33.333 0.00 0.00 35.34 2.29
1872 2308 9.851686 TCAATCTGCCTAGACAATAAATATGTT 57.148 29.630 0.00 0.00 35.34 2.71
1905 2341 1.071542 TCCACATCTTCGCACCTGAAA 59.928 47.619 0.00 0.00 0.00 2.69
1917 2353 9.751542 TCTTCGCACCTGAAATTTAAAATAAAA 57.248 25.926 0.00 0.00 0.00 1.52
1936 2482 8.736751 AATAAAATAGTGGTTACTTTGTTGCG 57.263 30.769 0.00 0.00 38.36 4.85
1937 2483 4.759516 AATAGTGGTTACTTTGTTGCGG 57.240 40.909 0.00 0.00 38.36 5.69
1940 2486 2.552315 AGTGGTTACTTTGTTGCGGATG 59.448 45.455 0.00 0.00 31.66 3.51
1953 2503 1.671054 CGGATGGTCACACCCACAC 60.671 63.158 0.00 0.00 37.50 3.82
1961 2511 0.751277 TCACACCCACACTTTGGCAG 60.751 55.000 0.00 0.00 45.37 4.85
1974 2524 3.821033 ACTTTGGCAGTGAAATAGGTGTC 59.179 43.478 0.00 0.00 32.83 3.67
1976 2526 3.788227 TGGCAGTGAAATAGGTGTCTT 57.212 42.857 0.00 0.00 0.00 3.01
1978 2528 2.749621 GGCAGTGAAATAGGTGTCTTGG 59.250 50.000 0.00 0.00 0.00 3.61
1979 2529 3.559171 GGCAGTGAAATAGGTGTCTTGGA 60.559 47.826 0.00 0.00 0.00 3.53
1980 2530 3.686726 GCAGTGAAATAGGTGTCTTGGAG 59.313 47.826 0.00 0.00 0.00 3.86
1981 2531 4.563580 GCAGTGAAATAGGTGTCTTGGAGA 60.564 45.833 0.00 0.00 0.00 3.71
1982 2532 5.551233 CAGTGAAATAGGTGTCTTGGAGAA 58.449 41.667 0.00 0.00 0.00 2.87
1983 2533 5.409826 CAGTGAAATAGGTGTCTTGGAGAAC 59.590 44.000 0.00 0.00 0.00 3.01
1984 2534 5.308237 AGTGAAATAGGTGTCTTGGAGAACT 59.692 40.000 0.00 0.00 0.00 3.01
1988 2539 6.884280 AATAGGTGTCTTGGAGAACTTTTG 57.116 37.500 0.00 0.00 0.00 2.44
2012 2567 8.397575 TGTTTGAACTTGTTAGTATATTGCCA 57.602 30.769 0.00 0.00 33.17 4.92
2014 2569 9.289303 GTTTGAACTTGTTAGTATATTGCCATG 57.711 33.333 0.00 0.00 33.17 3.66
2033 2588 3.500448 TGGCAAATAGGGCAATCGATA 57.500 42.857 0.00 0.00 40.73 2.92
2048 2604 6.458342 GGCAATCGATAAACTAGGACCTTTTG 60.458 42.308 0.00 0.00 0.00 2.44
2067 2623 6.462909 CCTTTTGCCTTTCATTGGACTACTTT 60.463 38.462 0.00 0.00 0.00 2.66
2093 2653 5.924825 CCCACCGCATAGTACTAACTATTTC 59.075 44.000 6.70 0.00 44.88 2.17
2095 2655 6.862090 CCACCGCATAGTACTAACTATTTCTC 59.138 42.308 6.70 0.00 44.88 2.87
2097 2657 7.378995 CACCGCATAGTACTAACTATTTCTCAC 59.621 40.741 6.70 0.00 44.88 3.51
2123 2683 8.575589 CACTATATACTCTCCATAGATGCATCC 58.424 40.741 23.06 5.58 0.00 3.51
2128 2688 2.902486 TCTCCATAGATGCATCCTGTCC 59.098 50.000 23.06 0.00 0.00 4.02
2129 2689 1.620323 TCCATAGATGCATCCTGTCCG 59.380 52.381 23.06 8.71 0.00 4.79
2145 2705 4.889427 CGCTTCAGTGGATCACGA 57.111 55.556 0.00 0.00 39.64 4.35
2181 2741 1.122019 GGGGATCTGTGAGGGCGTAT 61.122 60.000 0.00 0.00 0.00 3.06
2201 2761 5.696270 CGTATATTATCTTCACCAGCAGCAA 59.304 40.000 0.00 0.00 0.00 3.91
2288 2848 2.277084 GATTTTGGTCTATCACGGCGT 58.723 47.619 6.77 6.77 0.00 5.68
2353 2913 4.100344 TGGGACGATGTAAGCTAGCAATTA 59.900 41.667 18.83 4.83 0.00 1.40
2359 2929 8.438676 ACGATGTAAGCTAGCAATTATCTTTT 57.561 30.769 18.83 1.18 0.00 2.27
2470 3047 4.946157 GGGATATATGGCACCAGAATTCAG 59.054 45.833 8.44 0.00 0.00 3.02
2477 3054 6.855763 ATGGCACCAGAATTCAGAAATAAA 57.144 33.333 8.44 0.00 0.00 1.40
2519 3096 5.899299 ACAGACGTATATAGTTTGGGTGTC 58.101 41.667 0.00 0.00 0.00 3.67
2562 3139 6.508030 TGGTACATAAGGAATGCTCCAATA 57.492 37.500 0.00 0.00 45.24 1.90
2632 3217 3.947196 AGACAACATGTTCAGCAGAAACA 59.053 39.130 8.48 0.00 35.08 2.83
2633 3218 4.036027 AGACAACATGTTCAGCAGAAACAG 59.964 41.667 8.48 0.00 35.08 3.16
2716 3305 7.911727 CGATTTGCAAATGACAAGATCTGAATA 59.088 33.333 28.67 0.00 0.00 1.75
2730 3319 9.107177 CAAGATCTGAATATTGTCTTTGTAGCT 57.893 33.333 0.00 0.00 30.98 3.32
2738 3327 8.594881 AATATTGTCTTTGTAGCTATCTTCCG 57.405 34.615 0.00 0.00 0.00 4.30
2743 3332 2.579207 TGTAGCTATCTTCCGCACAC 57.421 50.000 0.00 0.00 0.00 3.82
2744 3333 1.822371 TGTAGCTATCTTCCGCACACA 59.178 47.619 0.00 0.00 0.00 3.72
2745 3334 2.194271 GTAGCTATCTTCCGCACACAC 58.806 52.381 0.00 0.00 0.00 3.82
2746 3335 0.608130 AGCTATCTTCCGCACACACA 59.392 50.000 0.00 0.00 0.00 3.72
2747 3336 0.721718 GCTATCTTCCGCACACACAC 59.278 55.000 0.00 0.00 0.00 3.82
2789 3389 7.929941 AAGATGGTTCTGATTTCTAAAGTCC 57.070 36.000 0.00 0.00 30.72 3.85
2794 3405 9.807921 ATGGTTCTGATTTCTAAAGTCCTTAAA 57.192 29.630 0.00 0.00 0.00 1.52
2865 3478 4.322057 AGGTATCCTTGCATTTGGTCTT 57.678 40.909 0.00 0.00 0.00 3.01
2875 3488 6.378280 CCTTGCATTTGGTCTTTAGTCCTAAT 59.622 38.462 0.00 0.00 31.72 1.73
2896 3509 3.617540 TCAATACGGCTGTGTGTTTTG 57.382 42.857 8.92 4.82 0.00 2.44
2908 3521 4.815269 TGTGTGTTTTGGTTTTCCTTCTG 58.185 39.130 0.00 0.00 41.38 3.02
3042 3715 6.716628 TGAGATAGGGATAAAATGCATGAACC 59.283 38.462 0.00 0.00 0.00 3.62
3050 3723 2.537633 AATGCATGAACCATGACCCT 57.462 45.000 0.00 0.00 43.81 4.34
3052 3725 0.697658 TGCATGAACCATGACCCTGA 59.302 50.000 10.77 0.00 43.81 3.86
3072 3745 0.253044 GAACAGGCCAGCTACATGGA 59.747 55.000 5.01 0.00 43.57 3.41
3078 3751 3.008813 CAGGCCAGCTACATGGATTATCT 59.991 47.826 5.01 0.00 43.57 1.98
3086 3762 6.148976 CAGCTACATGGATTATCTGTGGAATG 59.851 42.308 0.00 0.00 0.00 2.67
3116 3792 5.126869 TGAAGCAGAAATTTCAAACTGGTCA 59.873 36.000 19.99 11.52 39.58 4.02
3131 3807 1.948834 TGGTCAGTTGCAAGTGATGTG 59.051 47.619 33.42 10.76 40.23 3.21
3132 3808 1.949525 GGTCAGTTGCAAGTGATGTGT 59.050 47.619 33.42 0.00 40.23 3.72
3137 3813 3.059884 AGTTGCAAGTGATGTGTCTACG 58.940 45.455 5.84 0.00 0.00 3.51
3169 3845 8.026607 GCAAGTGCAGGTAAAATTACTCAATAA 58.973 33.333 0.00 0.00 41.59 1.40
3244 3925 7.585286 TTCATTTTTGTTGCAGATAAGCATC 57.415 32.000 0.00 0.00 45.19 3.91
3264 3945 1.750399 CCTCCAAGTTGGCGGATGG 60.750 63.158 24.28 12.78 45.16 3.51
3266 3947 2.196997 CTCCAAGTTGGCGGATGGGA 62.197 60.000 17.68 0.00 37.47 4.37
3288 3969 6.267014 GGGATGAAATTGATGGATGATTCTGT 59.733 38.462 0.00 0.00 0.00 3.41
3293 3974 4.707030 TTGATGGATGATTCTGTTGCAC 57.293 40.909 0.00 0.00 0.00 4.57
3320 4004 2.281692 TGCAACCATCAGCGCTGT 60.282 55.556 34.70 20.41 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.634883 ACAATCATGTTTTTGCTGTTGCAA 59.365 33.333 0.00 0.00 46.76 4.08
3 4 4.034163 CACAATCATGTTTTTGCTGTTGCA 59.966 37.500 0.00 0.00 42.33 4.08
4 5 4.520078 CACAATCATGTTTTTGCTGTTGC 58.480 39.130 0.00 0.00 37.82 4.17
5 6 4.809958 TCCACAATCATGTTTTTGCTGTTG 59.190 37.500 0.00 0.00 37.82 3.33
6 7 5.021033 TCCACAATCATGTTTTTGCTGTT 57.979 34.783 0.00 0.00 37.82 3.16
7 8 4.669206 TCCACAATCATGTTTTTGCTGT 57.331 36.364 0.00 0.00 37.82 4.40
8 9 7.655236 TTTATCCACAATCATGTTTTTGCTG 57.345 32.000 0.00 0.00 37.82 4.41
9 10 8.558700 GTTTTTATCCACAATCATGTTTTTGCT 58.441 29.630 0.00 0.00 37.82 3.91
10 11 8.341173 TGTTTTTATCCACAATCATGTTTTTGC 58.659 29.630 0.00 0.00 37.82 3.68
14 15 9.829507 TCTTTGTTTTTATCCACAATCATGTTT 57.170 25.926 0.00 0.00 37.82 2.83
15 16 9.829507 TTCTTTGTTTTTATCCACAATCATGTT 57.170 25.926 0.00 0.00 37.82 2.71
16 17 9.260002 GTTCTTTGTTTTTATCCACAATCATGT 57.740 29.630 0.00 0.00 41.61 3.21
17 18 9.480053 AGTTCTTTGTTTTTATCCACAATCATG 57.520 29.630 0.00 0.00 32.96 3.07
116 117 8.814931 TGGTGAACATTTTCCTAATTCATGAAT 58.185 29.630 15.36 15.36 32.30 2.57
117 118 8.187913 TGGTGAACATTTTCCTAATTCATGAA 57.812 30.769 11.26 11.26 32.30 2.57
118 119 7.773489 TGGTGAACATTTTCCTAATTCATGA 57.227 32.000 0.00 0.00 32.30 3.07
133 134 7.064490 GTGAACAGTTTTTGAAATGGTGAACAT 59.936 33.333 0.00 0.00 43.07 2.71
134 135 6.367422 GTGAACAGTTTTTGAAATGGTGAACA 59.633 34.615 0.00 0.00 0.00 3.18
135 136 6.367422 TGTGAACAGTTTTTGAAATGGTGAAC 59.633 34.615 0.00 0.00 0.00 3.18
136 137 6.459066 TGTGAACAGTTTTTGAAATGGTGAA 58.541 32.000 0.00 0.00 0.00 3.18
137 138 6.030548 TGTGAACAGTTTTTGAAATGGTGA 57.969 33.333 0.00 0.00 0.00 4.02
138 139 6.718454 TTGTGAACAGTTTTTGAAATGGTG 57.282 33.333 0.00 0.00 0.00 4.17
139 140 7.920160 ATTTGTGAACAGTTTTTGAAATGGT 57.080 28.000 0.00 0.00 0.00 3.55
140 141 8.449397 TGAATTTGTGAACAGTTTTTGAAATGG 58.551 29.630 0.00 0.00 0.00 3.16
141 142 9.823098 TTGAATTTGTGAACAGTTTTTGAAATG 57.177 25.926 0.00 0.00 0.00 2.32
151 152 9.991388 CATGAAATTTTTGAATTTGTGAACAGT 57.009 25.926 2.17 0.00 32.92 3.55
199 200 9.814899 TTTAAACATGTGAACATTCTTTGATGT 57.185 25.926 0.00 0.00 41.83 3.06
210 211 9.482627 AGTGAAAACTTTTTAAACATGTGAACA 57.517 25.926 0.00 0.00 0.00 3.18
252 253 9.927668 GGAGTGAATATTTTCTTGGAATTCAAA 57.072 29.630 7.93 0.69 38.06 2.69
253 254 8.243426 CGGAGTGAATATTTTCTTGGAATTCAA 58.757 33.333 7.93 0.00 38.06 2.69
254 255 7.148086 CCGGAGTGAATATTTTCTTGGAATTCA 60.148 37.037 7.93 0.00 34.95 2.57
255 256 7.196331 CCGGAGTGAATATTTTCTTGGAATTC 58.804 38.462 0.00 0.00 32.78 2.17
256 257 6.405842 GCCGGAGTGAATATTTTCTTGGAATT 60.406 38.462 5.05 0.00 32.78 2.17
257 258 5.067805 GCCGGAGTGAATATTTTCTTGGAAT 59.932 40.000 5.05 0.00 32.78 3.01
258 259 4.398044 GCCGGAGTGAATATTTTCTTGGAA 59.602 41.667 5.05 0.00 32.78 3.53
259 260 3.945285 GCCGGAGTGAATATTTTCTTGGA 59.055 43.478 5.05 0.00 32.78 3.53
260 261 3.242739 CGCCGGAGTGAATATTTTCTTGG 60.243 47.826 5.05 0.35 32.78 3.61
261 262 3.621268 TCGCCGGAGTGAATATTTTCTTG 59.379 43.478 5.05 0.00 32.78 3.02
262 263 3.621715 GTCGCCGGAGTGAATATTTTCTT 59.378 43.478 5.05 0.00 33.38 2.52
263 264 3.195661 GTCGCCGGAGTGAATATTTTCT 58.804 45.455 5.05 0.00 33.38 2.52
264 265 2.034001 CGTCGCCGGAGTGAATATTTTC 60.034 50.000 5.05 0.00 33.38 2.29
265 266 1.931172 CGTCGCCGGAGTGAATATTTT 59.069 47.619 5.05 0.00 33.38 1.82
266 267 1.567504 CGTCGCCGGAGTGAATATTT 58.432 50.000 5.05 0.00 33.38 1.40
267 268 3.267900 CGTCGCCGGAGTGAATATT 57.732 52.632 5.05 0.00 33.38 1.28
465 469 9.489084 AACAATTTTAAGGGAAAAATCTAGCAC 57.511 29.630 0.00 0.00 40.39 4.40
466 470 9.487790 CAACAATTTTAAGGGAAAAATCTAGCA 57.512 29.630 0.00 0.00 40.39 3.49
467 471 8.935844 CCAACAATTTTAAGGGAAAAATCTAGC 58.064 33.333 0.00 0.00 40.39 3.42
468 472 9.996554 ACCAACAATTTTAAGGGAAAAATCTAG 57.003 29.630 0.00 0.00 40.39 2.43
470 474 9.119418 CAACCAACAATTTTAAGGGAAAAATCT 57.881 29.630 0.00 0.00 40.39 2.40
471 475 8.349245 CCAACCAACAATTTTAAGGGAAAAATC 58.651 33.333 0.00 0.00 40.39 2.17
472 476 7.836685 ACCAACCAACAATTTTAAGGGAAAAAT 59.163 29.630 0.00 0.00 40.39 1.82
473 477 7.121315 CACCAACCAACAATTTTAAGGGAAAAA 59.879 33.333 0.00 0.00 40.39 1.94
474 478 6.599638 CACCAACCAACAATTTTAAGGGAAAA 59.400 34.615 0.00 0.00 41.24 2.29
475 479 6.116126 CACCAACCAACAATTTTAAGGGAAA 58.884 36.000 0.00 0.00 0.00 3.13
476 480 5.675538 CACCAACCAACAATTTTAAGGGAA 58.324 37.500 0.00 0.00 0.00 3.97
477 481 4.443598 GCACCAACCAACAATTTTAAGGGA 60.444 41.667 0.00 0.00 0.00 4.20
478 482 3.812609 GCACCAACCAACAATTTTAAGGG 59.187 43.478 0.00 0.00 0.00 3.95
479 483 4.702831 AGCACCAACCAACAATTTTAAGG 58.297 39.130 0.00 0.00 0.00 2.69
480 484 6.744112 TCTAGCACCAACCAACAATTTTAAG 58.256 36.000 0.00 0.00 0.00 1.85
481 485 6.716934 TCTAGCACCAACCAACAATTTTAA 57.283 33.333 0.00 0.00 0.00 1.52
482 486 6.909550 ATCTAGCACCAACCAACAATTTTA 57.090 33.333 0.00 0.00 0.00 1.52
483 487 5.806654 ATCTAGCACCAACCAACAATTTT 57.193 34.783 0.00 0.00 0.00 1.82
484 488 5.564651 CGAATCTAGCACCAACCAACAATTT 60.565 40.000 0.00 0.00 0.00 1.82
485 489 4.082787 CGAATCTAGCACCAACCAACAATT 60.083 41.667 0.00 0.00 0.00 2.32
486 490 3.440173 CGAATCTAGCACCAACCAACAAT 59.560 43.478 0.00 0.00 0.00 2.71
487 491 2.811431 CGAATCTAGCACCAACCAACAA 59.189 45.455 0.00 0.00 0.00 2.83
488 492 2.224426 ACGAATCTAGCACCAACCAACA 60.224 45.455 0.00 0.00 0.00 3.33
489 493 2.423577 ACGAATCTAGCACCAACCAAC 58.576 47.619 0.00 0.00 0.00 3.77
490 494 2.851263 ACGAATCTAGCACCAACCAA 57.149 45.000 0.00 0.00 0.00 3.67
491 495 3.181469 GGATACGAATCTAGCACCAACCA 60.181 47.826 0.00 0.00 32.29 3.67
492 496 3.069729 AGGATACGAATCTAGCACCAACC 59.930 47.826 0.00 0.00 46.39 3.77
493 497 4.299978 GAGGATACGAATCTAGCACCAAC 58.700 47.826 0.00 0.00 46.39 3.77
494 498 3.321111 GGAGGATACGAATCTAGCACCAA 59.679 47.826 0.00 0.00 46.39 3.67
495 499 2.891580 GGAGGATACGAATCTAGCACCA 59.108 50.000 0.00 0.00 46.39 4.17
496 500 2.891580 TGGAGGATACGAATCTAGCACC 59.108 50.000 0.00 0.00 46.39 5.01
524 529 6.910259 AAGGAACCCCAAATTAGATCTACT 57.090 37.500 0.67 0.00 33.88 2.57
525 530 7.956328 AAAAGGAACCCCAAATTAGATCTAC 57.044 36.000 0.67 0.00 33.88 2.59
552 559 3.779759 AGCAACAACAAAAGCATCGAAA 58.220 36.364 0.00 0.00 0.00 3.46
565 572 5.689383 TCTTCTCCATTTGTAGCAACAAC 57.311 39.130 0.00 0.00 45.18 3.32
568 575 5.241728 ACCTTTCTTCTCCATTTGTAGCAAC 59.758 40.000 0.00 0.00 0.00 4.17
586 701 2.545537 AAGAGACCAACGGACCTTTC 57.454 50.000 0.00 0.00 0.00 2.62
655 780 2.280628 GCGAGGGGAAGAAATACTGTG 58.719 52.381 0.00 0.00 0.00 3.66
659 784 2.544267 CGATTGCGAGGGGAAGAAATAC 59.456 50.000 0.00 0.00 40.82 1.89
661 786 1.668419 CGATTGCGAGGGGAAGAAAT 58.332 50.000 0.00 0.00 40.82 2.17
695 955 7.814107 TCTGAAATCCAAATATTTGTTGTCAGC 59.186 33.333 26.03 13.77 35.66 4.26
697 957 7.807433 CGTCTGAAATCCAAATATTTGTTGTCA 59.193 33.333 23.24 18.72 36.45 3.58
698 958 8.020819 TCGTCTGAAATCCAAATATTTGTTGTC 58.979 33.333 23.24 15.89 36.45 3.18
700 960 8.915871 ATCGTCTGAAATCCAAATATTTGTTG 57.084 30.769 23.24 11.61 36.45 3.33
708 976 5.639082 GCCAAAAATCGTCTGAAATCCAAAT 59.361 36.000 0.00 0.00 0.00 2.32
710 978 4.555262 GCCAAAAATCGTCTGAAATCCAA 58.445 39.130 0.00 0.00 0.00 3.53
712 980 3.511699 GGCCAAAAATCGTCTGAAATCC 58.488 45.455 0.00 0.00 0.00 3.01
714 982 2.094752 CGGGCCAAAAATCGTCTGAAAT 60.095 45.455 4.39 0.00 0.00 2.17
721 989 1.584495 GCTTCGGGCCAAAAATCGT 59.416 52.632 4.39 0.00 34.27 3.73
731 999 3.346631 TTCGTCTACGGCTTCGGGC 62.347 63.158 2.24 0.00 40.29 6.13
732 1000 1.226603 CTTCGTCTACGGCTTCGGG 60.227 63.158 2.24 0.00 40.29 5.14
733 1001 0.522915 GACTTCGTCTACGGCTTCGG 60.523 60.000 2.24 0.00 40.29 4.30
734 1002 0.856490 CGACTTCGTCTACGGCTTCG 60.856 60.000 2.24 4.72 40.29 3.79
735 1003 0.445436 TCGACTTCGTCTACGGCTTC 59.555 55.000 2.24 0.00 40.80 3.86
736 1004 0.167689 GTCGACTTCGTCTACGGCTT 59.832 55.000 8.70 0.00 40.80 4.35
737 1005 1.642952 GGTCGACTTCGTCTACGGCT 61.643 60.000 16.46 0.00 40.80 5.52
738 1006 1.226239 GGTCGACTTCGTCTACGGC 60.226 63.158 16.46 0.00 40.80 5.68
739 1007 1.427020 GGGTCGACTTCGTCTACGG 59.573 63.158 16.46 0.00 40.80 4.02
740 1008 1.427020 GGGGTCGACTTCGTCTACG 59.573 63.158 16.46 0.00 40.80 3.51
741 1009 1.427020 CGGGGTCGACTTCGTCTAC 59.573 63.158 16.46 0.00 40.80 2.59
742 1010 2.401766 GCGGGGTCGACTTCGTCTA 61.402 63.158 23.63 0.00 40.80 2.59
743 1011 3.745803 GCGGGGTCGACTTCGTCT 61.746 66.667 23.63 0.00 40.80 4.18
744 1012 4.790861 GGCGGGGTCGACTTCGTC 62.791 72.222 23.63 20.35 42.13 4.20
769 1037 2.125350 CAGAACTCTGGCTCCGGC 60.125 66.667 0.00 0.00 40.20 6.13
777 1045 0.951040 GAACCCGCACCAGAACTCTG 60.951 60.000 0.00 0.00 43.40 3.35
778 1046 1.371558 GAACCCGCACCAGAACTCT 59.628 57.895 0.00 0.00 0.00 3.24
779 1047 2.027625 CGAACCCGCACCAGAACTC 61.028 63.158 0.00 0.00 0.00 3.01
780 1048 2.030562 CGAACCCGCACCAGAACT 59.969 61.111 0.00 0.00 0.00 3.01
781 1049 3.047877 CCGAACCCGCACCAGAAC 61.048 66.667 0.00 0.00 0.00 3.01
782 1050 4.323477 CCCGAACCCGCACCAGAA 62.323 66.667 0.00 0.00 0.00 3.02
787 1055 3.931190 AAATCCCCCGAACCCGCAC 62.931 63.158 0.00 0.00 0.00 5.34
788 1056 3.653078 AAATCCCCCGAACCCGCA 61.653 61.111 0.00 0.00 0.00 5.69
789 1057 3.138128 CAAATCCCCCGAACCCGC 61.138 66.667 0.00 0.00 0.00 6.13
790 1058 3.138128 GCAAATCCCCCGAACCCG 61.138 66.667 0.00 0.00 0.00 5.28
791 1059 2.758327 GGCAAATCCCCCGAACCC 60.758 66.667 0.00 0.00 0.00 4.11
801 1069 4.536687 CTTCGGCGCCGGCAAATC 62.537 66.667 44.95 11.84 42.47 2.17
807 1075 3.788766 CACTTTCTTCGGCGCCGG 61.789 66.667 44.95 31.39 40.25 6.13
808 1076 3.788766 CCACTTTCTTCGGCGCCG 61.789 66.667 42.13 42.13 41.35 6.46
809 1077 3.431725 CCCACTTTCTTCGGCGCC 61.432 66.667 19.07 19.07 0.00 6.53
810 1078 4.103103 GCCCACTTTCTTCGGCGC 62.103 66.667 0.00 0.00 0.00 6.53
811 1079 2.668212 TGCCCACTTTCTTCGGCG 60.668 61.111 0.00 0.00 44.71 6.46
812 1080 2.335712 CCTGCCCACTTTCTTCGGC 61.336 63.158 0.00 0.00 41.99 5.54
813 1081 1.675641 CCCTGCCCACTTTCTTCGG 60.676 63.158 0.00 0.00 0.00 4.30
814 1082 1.675641 CCCCTGCCCACTTTCTTCG 60.676 63.158 0.00 0.00 0.00 3.79
815 1083 0.609406 GTCCCCTGCCCACTTTCTTC 60.609 60.000 0.00 0.00 0.00 2.87
816 1084 1.068352 AGTCCCCTGCCCACTTTCTT 61.068 55.000 0.00 0.00 0.00 2.52
817 1085 1.464198 AGTCCCCTGCCCACTTTCT 60.464 57.895 0.00 0.00 0.00 2.52
818 1086 1.303643 CAGTCCCCTGCCCACTTTC 60.304 63.158 0.00 0.00 0.00 2.62
819 1087 2.846532 CAGTCCCCTGCCCACTTT 59.153 61.111 0.00 0.00 0.00 2.66
837 1105 4.530857 ATTTCCTCCGCTCGCCCG 62.531 66.667 0.00 0.00 0.00 6.13
838 1106 2.589159 GATTTCCTCCGCTCGCCC 60.589 66.667 0.00 0.00 0.00 6.13
839 1107 2.962253 CGATTTCCTCCGCTCGCC 60.962 66.667 0.00 0.00 0.00 5.54
880 1148 8.568617 AAATGGGACCTAGTATTATTCAGTCT 57.431 34.615 0.00 0.00 0.00 3.24
881 1149 9.274206 GAAAATGGGACCTAGTATTATTCAGTC 57.726 37.037 0.00 0.00 0.00 3.51
893 1161 5.810095 ACAGAAGAAGAAAATGGGACCTAG 58.190 41.667 0.00 0.00 0.00 3.02
903 1171 6.959639 AGGTGCAAATACAGAAGAAGAAAA 57.040 33.333 0.00 0.00 0.00 2.29
907 1175 5.456192 CGTAGGTGCAAATACAGAAGAAG 57.544 43.478 9.52 0.00 0.00 2.85
925 1194 8.120465 CCATAATTACTGTTGTTTTAGCCGTAG 58.880 37.037 0.00 0.00 0.00 3.51
951 1222 8.492673 TGTGTGTTAATTCTCCTGAATCATAC 57.507 34.615 0.00 0.00 41.62 2.39
956 1227 7.823745 AAGTTGTGTGTTAATTCTCCTGAAT 57.176 32.000 0.00 0.00 44.08 2.57
968 1239 8.208224 TCCTGAATCTAAGAAAGTTGTGTGTTA 58.792 33.333 0.00 0.00 0.00 2.41
970 1241 6.483640 GTCCTGAATCTAAGAAAGTTGTGTGT 59.516 38.462 0.00 0.00 0.00 3.72
971 1242 6.073003 GGTCCTGAATCTAAGAAAGTTGTGTG 60.073 42.308 0.00 0.00 0.00 3.82
972 1243 5.998363 GGTCCTGAATCTAAGAAAGTTGTGT 59.002 40.000 0.00 0.00 0.00 3.72
977 1248 5.017490 TCTCGGTCCTGAATCTAAGAAAGT 58.983 41.667 0.00 0.00 0.00 2.66
978 1249 5.584253 TCTCGGTCCTGAATCTAAGAAAG 57.416 43.478 0.00 0.00 0.00 2.62
979 1250 5.656859 TCATCTCGGTCCTGAATCTAAGAAA 59.343 40.000 0.00 0.00 0.00 2.52
980 1251 5.067936 GTCATCTCGGTCCTGAATCTAAGAA 59.932 44.000 0.00 0.00 0.00 2.52
982 1253 4.555708 CGTCATCTCGGTCCTGAATCTAAG 60.556 50.000 0.00 0.00 0.00 2.18
983 1254 3.315470 CGTCATCTCGGTCCTGAATCTAA 59.685 47.826 0.00 0.00 0.00 2.10
984 1255 2.879026 CGTCATCTCGGTCCTGAATCTA 59.121 50.000 0.00 0.00 0.00 1.98
985 1256 1.678627 CGTCATCTCGGTCCTGAATCT 59.321 52.381 0.00 0.00 0.00 2.40
986 1257 1.269309 CCGTCATCTCGGTCCTGAATC 60.269 57.143 0.00 0.00 44.77 2.52
987 1258 0.747255 CCGTCATCTCGGTCCTGAAT 59.253 55.000 0.00 0.00 44.77 2.57
1011 1282 1.005340 CAAGCTCGCTGTCTTGATCC 58.995 55.000 0.00 0.00 41.50 3.36
1014 1288 1.368950 AGCAAGCTCGCTGTCTTGA 59.631 52.632 0.00 0.00 41.85 3.02
1026 1303 2.034687 TTCTCCAGGGCAGCAAGC 59.965 61.111 0.00 0.00 44.65 4.01
1073 1350 0.037605 AAGCGTGAAAGGTAGGTCGG 60.038 55.000 0.00 0.00 0.00 4.79
1077 1354 2.743636 TGAGAAGCGTGAAAGGTAGG 57.256 50.000 0.00 0.00 0.00 3.18
1087 1364 1.344438 TGTGATGGACTTGAGAAGCGT 59.656 47.619 0.00 0.00 0.00 5.07
1116 1393 2.679837 GCCGATTTCATGAGCTTCAGAA 59.320 45.455 0.00 0.00 0.00 3.02
1146 1423 0.249398 CCTTGTAGACCACCCCGAAG 59.751 60.000 0.00 0.00 0.00 3.79
1185 1464 6.373005 TGTTATTCATTTCAGAGTGGAGGA 57.627 37.500 0.00 0.00 0.00 3.71
1215 1518 9.404848 TCAGCTCTCAATATTCTTGATTTCAAT 57.595 29.630 0.00 0.00 35.02 2.57
1217 1520 7.825761 TGTCAGCTCTCAATATTCTTGATTTCA 59.174 33.333 0.00 0.00 0.00 2.69
1222 1525 6.881570 TCATGTCAGCTCTCAATATTCTTGA 58.118 36.000 0.00 0.00 0.00 3.02
1228 1533 7.674471 CATGAATCATGTCAGCTCTCAATAT 57.326 36.000 14.70 0.00 37.12 1.28
1286 1608 1.168714 GGAGCTTCTTCACGGCAATT 58.831 50.000 0.00 0.00 0.00 2.32
1305 1627 3.453717 TCCAGGATCTCAAAGGTCTCATG 59.546 47.826 0.00 0.00 0.00 3.07
1312 1634 3.988976 TCTTGTCCAGGATCTCAAAGG 57.011 47.619 0.00 0.00 0.00 3.11
1418 1740 3.785859 TGGAGCGGGACCATCAGC 61.786 66.667 0.00 0.00 32.03 4.26
1419 1741 2.187946 GTGGAGCGGGACCATCAG 59.812 66.667 0.00 0.00 39.69 2.90
1431 1753 1.512926 CAGACAAGGTTTCCGTGGAG 58.487 55.000 6.66 0.00 37.32 3.86
1434 1756 1.515521 GCCCAGACAAGGTTTCCGTG 61.516 60.000 0.62 0.62 38.88 4.94
1442 1764 2.281761 ACGCTTGCCCAGACAAGG 60.282 61.111 6.42 0.15 45.83 3.61
1466 1788 1.810441 CTCGAAGCAGAGCAGCCTG 60.810 63.158 6.54 6.54 37.23 4.85
1493 1815 0.538287 AGTCAGCAAGGCACCCTTTC 60.538 55.000 0.00 0.00 41.69 2.62
1535 1857 2.242196 AGGCAAGGAAAGCTATAAGGCA 59.758 45.455 0.00 0.00 34.17 4.75
1555 1878 4.745125 ACGCACTACAATATGGATCGAAAG 59.255 41.667 0.00 0.00 0.00 2.62
1560 1883 4.368315 TGACACGCACTACAATATGGATC 58.632 43.478 0.00 0.00 0.00 3.36
1563 1886 3.063452 GGTTGACACGCACTACAATATGG 59.937 47.826 0.00 0.00 0.00 2.74
1564 1887 3.682377 TGGTTGACACGCACTACAATATG 59.318 43.478 0.00 0.00 0.00 1.78
1575 1925 3.003897 TGGATTAAAGTTGGTTGACACGC 59.996 43.478 0.00 0.00 0.00 5.34
1610 1962 6.959639 AAGTTCAGAAGAGTGGCAAAATAA 57.040 33.333 0.00 0.00 0.00 1.40
1611 1963 6.239008 CCAAAGTTCAGAAGAGTGGCAAAATA 60.239 38.462 0.00 0.00 0.00 1.40
1612 1964 5.452356 CCAAAGTTCAGAAGAGTGGCAAAAT 60.452 40.000 0.00 0.00 0.00 1.82
1613 1965 4.142182 CCAAAGTTCAGAAGAGTGGCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
1712 2133 8.100135 AGAGGATGAGAAATGAAAATAGGTCT 57.900 34.615 0.00 0.00 0.00 3.85
1716 2137 7.919621 GGCAAAGAGGATGAGAAATGAAAATAG 59.080 37.037 0.00 0.00 0.00 1.73
1723 2144 4.525024 AGAGGCAAAGAGGATGAGAAATG 58.475 43.478 0.00 0.00 0.00 2.32
1755 2180 9.685828 GTTTTCCTTACATATTTGTTAGTGCAA 57.314 29.630 0.00 0.00 37.28 4.08
1773 2198 5.531287 AGAAACGAGCACTTATGTTTTCCTT 59.469 36.000 0.00 0.00 34.89 3.36
1775 2200 5.147162 CAGAAACGAGCACTTATGTTTTCC 58.853 41.667 0.00 0.00 34.89 3.13
1776 2201 4.613031 GCAGAAACGAGCACTTATGTTTTC 59.387 41.667 0.00 0.00 34.89 2.29
1777 2202 4.275936 AGCAGAAACGAGCACTTATGTTTT 59.724 37.500 0.00 0.00 34.89 2.43
1792 2217 3.618690 AGGTCTATCCACAGCAGAAAC 57.381 47.619 0.00 0.00 39.02 2.78
1819 2255 4.921515 GCTCGGAATTTTCTTTTGGTTACC 59.078 41.667 0.00 0.00 0.00 2.85
1838 2274 2.295629 TCTAGGCAGATTGAGATGCTCG 59.704 50.000 0.00 0.00 42.19 5.03
1864 2300 8.855110 TGTGGACTTGACAACATAAACATATTT 58.145 29.630 0.00 0.00 0.00 1.40
1865 2301 8.402798 TGTGGACTTGACAACATAAACATATT 57.597 30.769 0.00 0.00 0.00 1.28
1866 2302 7.994425 TGTGGACTTGACAACATAAACATAT 57.006 32.000 0.00 0.00 0.00 1.78
1867 2303 7.882791 AGATGTGGACTTGACAACATAAACATA 59.117 33.333 0.00 0.00 0.00 2.29
1868 2304 6.716628 AGATGTGGACTTGACAACATAAACAT 59.283 34.615 0.00 0.00 0.00 2.71
1869 2305 6.061441 AGATGTGGACTTGACAACATAAACA 58.939 36.000 0.00 0.00 0.00 2.83
1870 2306 6.560253 AGATGTGGACTTGACAACATAAAC 57.440 37.500 0.00 0.00 0.00 2.01
1871 2307 6.073276 CGAAGATGTGGACTTGACAACATAAA 60.073 38.462 0.00 0.00 0.00 1.40
1872 2308 5.408299 CGAAGATGTGGACTTGACAACATAA 59.592 40.000 0.00 0.00 0.00 1.90
1880 2316 1.608025 GGTGCGAAGATGTGGACTTGA 60.608 52.381 0.00 0.00 0.00 3.02
1885 2321 0.684535 TTCAGGTGCGAAGATGTGGA 59.315 50.000 0.00 0.00 0.00 4.02
1917 2353 4.010667 TCCGCAACAAAGTAACCACTAT 57.989 40.909 0.00 0.00 33.48 2.12
1919 2355 2.335316 TCCGCAACAAAGTAACCACT 57.665 45.000 0.00 0.00 36.19 4.00
1931 2475 2.332654 GGGTGTGACCATCCGCAAC 61.333 63.158 0.00 0.00 41.02 4.17
1933 2479 3.245346 TGGGTGTGACCATCCGCA 61.245 61.111 0.00 0.00 45.65 5.69
1934 2480 2.746277 GTGGGTGTGACCATCCGC 60.746 66.667 0.00 0.00 45.65 5.54
1936 2482 0.110486 AAGTGTGGGTGTGACCATCC 59.890 55.000 0.00 0.00 43.59 3.51
1937 2483 1.608590 CAAAGTGTGGGTGTGACCATC 59.391 52.381 0.00 0.00 43.59 3.51
1940 2486 2.414750 CCAAAGTGTGGGTGTGACC 58.585 57.895 0.00 0.00 44.64 4.02
1953 2503 4.074970 AGACACCTATTTCACTGCCAAAG 58.925 43.478 0.00 0.00 0.00 2.77
1961 2511 5.552178 AGTTCTCCAAGACACCTATTTCAC 58.448 41.667 0.00 0.00 0.00 3.18
1974 2524 6.868339 ACAAGTTCAAACAAAAGTTCTCCAAG 59.132 34.615 0.00 0.00 0.00 3.61
1976 2526 6.339587 ACAAGTTCAAACAAAAGTTCTCCA 57.660 33.333 0.00 0.00 0.00 3.86
1978 2528 8.965986 ACTAACAAGTTCAAACAAAAGTTCTC 57.034 30.769 0.00 0.00 0.00 2.87
1988 2539 9.289303 CATGGCAATATACTAACAAGTTCAAAC 57.711 33.333 0.00 0.00 0.00 2.93
2012 2567 2.363306 TCGATTGCCCTATTTGCCAT 57.637 45.000 0.00 0.00 0.00 4.40
2014 2569 4.278419 AGTTTATCGATTGCCCTATTTGCC 59.722 41.667 1.71 0.00 0.00 4.52
2021 2576 3.071167 GGTCCTAGTTTATCGATTGCCCT 59.929 47.826 1.71 0.00 0.00 5.19
2030 2585 6.433093 TGAAAGGCAAAAGGTCCTAGTTTATC 59.567 38.462 0.00 0.00 31.24 1.75
2033 2588 4.542697 TGAAAGGCAAAAGGTCCTAGTTT 58.457 39.130 0.00 0.00 31.24 2.66
2048 2604 4.082190 GGGAAAAGTAGTCCAATGAAAGGC 60.082 45.833 0.00 0.00 36.83 4.35
2067 2623 3.368248 AGTTAGTACTATGCGGTGGGAA 58.632 45.455 2.79 0.00 31.21 3.97
2093 2653 8.620416 GCATCTATGGAGAGTATATAGTGTGAG 58.380 40.741 0.00 0.00 34.35 3.51
2095 2655 8.286191 TGCATCTATGGAGAGTATATAGTGTG 57.714 38.462 0.00 0.00 34.35 3.82
2097 2657 8.575589 GGATGCATCTATGGAGAGTATATAGTG 58.424 40.741 25.28 0.00 34.35 2.74
2123 2683 0.247460 TGATCCACTGAAGCGGACAG 59.753 55.000 0.00 0.00 40.68 3.51
2128 2688 0.109086 ACTCGTGATCCACTGAAGCG 60.109 55.000 0.00 0.00 31.34 4.68
2129 2689 2.086054 AACTCGTGATCCACTGAAGC 57.914 50.000 0.00 0.00 31.34 3.86
2145 2705 8.506083 ACAGATCCCCTTGATTATTTGATAACT 58.494 33.333 0.00 0.00 32.41 2.24
2181 2741 8.696043 ATAATTTGCTGCTGGTGAAGATAATA 57.304 30.769 0.00 0.00 0.00 0.98
2201 2761 6.256053 AGGTTTGAGGTCCATGTGAATAATT 58.744 36.000 0.00 0.00 0.00 1.40
2288 2848 3.888930 CCCAACTCTGGCTTTCACTTAAA 59.111 43.478 0.00 0.00 41.99 1.52
2327 2887 3.267483 GCTAGCTTACATCGTCCCAAAA 58.733 45.455 7.70 0.00 0.00 2.44
2439 3016 3.545703 GTGCCATATATCCCCTGCATAC 58.454 50.000 0.00 0.00 0.00 2.39
2470 3047 9.014297 TCTTGAAGGTGATTTCTCCTTTATTTC 57.986 33.333 13.54 3.73 46.37 2.17
2477 3054 4.594920 TCTGTCTTGAAGGTGATTTCTCCT 59.405 41.667 0.00 0.00 41.23 3.69
2542 3119 9.739276 CCTTAATATTGGAGCATTCCTTATGTA 57.261 33.333 0.00 0.00 44.36 2.29
2622 3207 3.088194 ACAACATTGCTGTTTCTGCTG 57.912 42.857 0.00 0.00 43.05 4.41
2632 3217 6.674694 TGCATTTTTGTTAACAACATTGCT 57.325 29.167 32.66 13.63 40.57 3.91
2633 3218 7.565431 GCATTGCATTTTTGTTAACAACATTGC 60.565 33.333 29.72 29.72 41.79 3.56
2690 3279 5.633927 TCAGATCTTGTCATTTGCAAATCG 58.366 37.500 21.70 16.31 0.00 3.34
2716 3305 4.811557 GCGGAAGATAGCTACAAAGACAAT 59.188 41.667 0.00 0.00 0.00 2.71
2730 3319 2.535012 TTGTGTGTGTGCGGAAGATA 57.465 45.000 0.00 0.00 0.00 1.98
2865 3478 6.046593 CACAGCCGTATTGAATTAGGACTAA 58.953 40.000 3.31 0.00 0.00 2.24
2875 3488 3.243234 CCAAAACACACAGCCGTATTGAA 60.243 43.478 0.00 0.00 0.00 2.69
2908 3521 2.438868 AAAAGGACGGCTTGCATTTC 57.561 45.000 0.00 0.00 0.00 2.17
3050 3723 1.065926 CATGTAGCTGGCCTGTTCTCA 60.066 52.381 11.69 8.76 0.00 3.27
3052 3725 0.254178 CCATGTAGCTGGCCTGTTCT 59.746 55.000 11.69 3.36 0.00 3.01
3072 3745 3.202818 TCACCCAGCATTCCACAGATAAT 59.797 43.478 0.00 0.00 0.00 1.28
3078 3751 0.895100 GCTTCACCCAGCATTCCACA 60.895 55.000 0.00 0.00 39.83 4.17
3086 3762 2.297033 TGAAATTTCTGCTTCACCCAGC 59.703 45.455 18.64 0.00 40.55 4.85
3116 3792 3.059884 CGTAGACACATCACTTGCAACT 58.940 45.455 0.00 0.00 0.00 3.16
3120 3796 2.672714 TGACGTAGACACATCACTTGC 58.327 47.619 0.00 0.00 0.00 4.01
3131 3807 2.510615 GCACTTGCATTGACGTAGAC 57.489 50.000 0.00 0.00 41.59 2.59
3143 3819 5.371115 TGAGTAATTTTACCTGCACTTGC 57.629 39.130 0.00 0.00 36.58 4.01
3218 3899 7.966246 TGCTTATCTGCAACAAAAATGAAAT 57.034 28.000 0.00 0.00 40.29 2.17
3264 3945 7.286215 ACAGAATCATCCATCAATTTCATCC 57.714 36.000 0.00 0.00 0.00 3.51
3266 3947 6.984474 GCAACAGAATCATCCATCAATTTCAT 59.016 34.615 0.00 0.00 0.00 2.57
3288 3969 1.152589 TGCAGTTGGGATGGTGCAA 60.153 52.632 0.00 0.00 42.79 4.08
3293 3974 0.819582 GATGGTTGCAGTTGGGATGG 59.180 55.000 0.00 0.00 0.00 3.51
3320 4004 1.427809 CCATCCTCCTGCTCCACATA 58.572 55.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.