Multiple sequence alignment - TraesCS7D01G021300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G021300 chr7D 100.000 7886 0 0 831 8716 10047229 10055114 0.000000e+00 14563.0
1 TraesCS7D01G021300 chr7D 97.086 5148 108 25 1863 6983 237846563 237851695 0.000000e+00 8637.0
2 TraesCS7D01G021300 chr7D 95.746 5148 161 35 1863 6984 308587838 308592953 0.000000e+00 8240.0
3 TraesCS7D01G021300 chr7D 81.011 890 145 17 977 1856 10478511 10477636 0.000000e+00 686.0
4 TraesCS7D01G021300 chr7D 79.287 898 156 21 977 1856 10470288 10469403 1.250000e-167 601.0
5 TraesCS7D01G021300 chr7D 100.000 284 0 0 1 284 10046399 10046682 7.750000e-145 525.0
6 TraesCS7D01G021300 chr7D 91.005 378 17 12 1862 2231 201182302 201182670 2.190000e-135 494.0
7 TraesCS7D01G021300 chr2D 96.866 5138 123 10 1863 6983 105584320 105589436 0.000000e+00 8562.0
8 TraesCS7D01G021300 chr2D 95.741 5142 145 38 1863 6983 62399568 62394480 0.000000e+00 8215.0
9 TraesCS7D01G021300 chr2D 97.205 4865 99 14 2122 6983 368812233 368817063 0.000000e+00 8196.0
10 TraesCS7D01G021300 chr2D 98.110 4708 70 11 2280 6984 421784364 421789055 0.000000e+00 8183.0
11 TraesCS7D01G021300 chr2D 98.684 4559 57 2 2427 6985 183604455 183609010 0.000000e+00 8083.0
12 TraesCS7D01G021300 chr2D 97.389 4558 107 4 2428 6985 86500669 86505214 0.000000e+00 7747.0
13 TraesCS7D01G021300 chr2D 88.261 460 35 13 1862 2307 260026432 260025978 4.630000e-147 532.0
14 TraesCS7D01G021300 chr2D 90.710 366 28 4 1864 2227 368811904 368812265 4.730000e-132 483.0
15 TraesCS7D01G021300 chr2D 89.426 331 23 11 1863 2189 315865637 315865315 2.930000e-109 407.0
16 TraesCS7D01G021300 chr2D 90.000 320 23 8 1863 2179 128450019 128450332 1.050000e-108 405.0
17 TraesCS7D01G021300 chr4D 96.751 5140 122 33 1863 6983 72250901 72256014 0.000000e+00 8525.0
18 TraesCS7D01G021300 chr4D 96.152 5172 123 49 1863 6983 85503392 85498246 0.000000e+00 8379.0
19 TraesCS7D01G021300 chr6D 96.663 5155 112 38 1863 6983 277127582 277122454 0.000000e+00 8512.0
20 TraesCS7D01G021300 chr3D 96.473 5189 107 43 1861 6988 179937079 179931906 0.000000e+00 8499.0
21 TraesCS7D01G021300 chr3D 98.239 284 5 0 1 284 75157295 75157578 1.690000e-136 497.0
22 TraesCS7D01G021300 chr3D 95.695 302 9 2 1862 2161 575229185 575228886 4.730000e-132 483.0
23 TraesCS7D01G021300 chr3D 80.000 95 9 7 2175 2263 19199091 19199181 2.630000e-05 62.1
24 TraesCS7D01G021300 chr5D 96.454 5161 132 34 1863 6983 73411818 73416967 0.000000e+00 8469.0
25 TraesCS7D01G021300 chr5D 96.667 300 8 1 1862 2161 334943364 334943067 1.690000e-136 497.0
26 TraesCS7D01G021300 chr5D 97.183 284 8 0 1 284 264630324 264630607 1.700000e-131 481.0
27 TraesCS7D01G021300 chr1D 96.738 4966 113 38 2059 6991 485036389 485031440 0.000000e+00 8227.0
28 TraesCS7D01G021300 chr1D 96.013 301 10 1 1862 2162 85512765 85513063 1.020000e-133 488.0
29 TraesCS7D01G021300 chr1D 75.676 370 75 12 1497 1860 487894572 487894212 4.180000e-38 171.0
30 TraesCS7D01G021300 chr4A 98.534 887 13 0 976 1862 729746931 729747817 0.000000e+00 1567.0
31 TraesCS7D01G021300 chr4A 98.196 887 13 1 976 1862 729148251 729149134 0.000000e+00 1546.0
32 TraesCS7D01G021300 chr4A 94.634 615 18 8 6983 7583 729149129 729149742 0.000000e+00 939.0
33 TraesCS7D01G021300 chr4A 95.591 567 17 4 6983 7542 729747812 729748377 0.000000e+00 902.0
34 TraesCS7D01G021300 chr4A 89.124 662 40 7 8081 8716 729796430 729797085 0.000000e+00 795.0
35 TraesCS7D01G021300 chr4A 81.124 890 142 18 977 1856 729686102 729686975 0.000000e+00 689.0
36 TraesCS7D01G021300 chr4A 80.089 899 147 16 977 1856 718926670 718925785 2.650000e-179 640.0
37 TraesCS7D01G021300 chr4A 79.799 896 152 19 977 1856 729079676 729078794 7.430000e-175 625.0
38 TraesCS7D01G021300 chr4A 79.088 899 153 20 977 1856 729862691 729863573 3.510000e-163 586.0
39 TraesCS7D01G021300 chr4A 92.750 400 26 2 8320 8716 729150206 729150605 7.590000e-160 575.0
40 TraesCS7D01G021300 chr4A 78.754 899 156 22 977 1856 728428844 728427962 3.530000e-158 569.0
41 TraesCS7D01G021300 chr4A 93.472 337 21 1 7747 8083 729790660 729790995 4.700000e-137 499.0
42 TraesCS7D01G021300 chr4A 80.148 675 109 14 977 1640 730067018 730066358 1.700000e-131 481.0
43 TraesCS7D01G021300 chr4A 91.908 346 21 7 7605 7946 729149803 729150145 2.200000e-130 477.0
44 TraesCS7D01G021300 chr4A 90.541 148 9 5 7605 7749 729754534 729754679 3.210000e-44 191.0
45 TraesCS7D01G021300 chr4A 81.776 214 36 3 7001 7213 729651112 729651323 8.990000e-40 176.0
46 TraesCS7D01G021300 chr4A 95.455 44 2 0 7540 7583 729754429 729754472 4.370000e-08 71.3
47 TraesCS7D01G021300 chr7A 78.444 617 116 12 1245 1856 9334613 9335217 3.820000e-103 387.0
48 TraesCS7D01G021300 chr1A 91.103 281 22 1 1 281 467195234 467194957 2.300000e-100 377.0
49 TraesCS7D01G021300 chr1A 90.813 283 23 1 1 283 58284499 58284778 8.260000e-100 375.0
50 TraesCS7D01G021300 chr1A 90.459 283 24 1 1 283 467194851 467194572 3.840000e-98 370.0
51 TraesCS7D01G021300 chr1A 75.956 366 79 7 1498 1860 586517104 586516745 6.950000e-41 180.0
52 TraesCS7D01G021300 chr1A 90.909 132 9 1 832 963 467194522 467194394 3.230000e-39 174.0
53 TraesCS7D01G021300 chr1A 71.630 853 176 46 977 1792 586380767 586379944 3.230000e-39 174.0
54 TraesCS7D01G021300 chr3A 90.459 283 24 1 1 283 171370403 171370682 3.840000e-98 370.0
55 TraesCS7D01G021300 chr2A 89.716 282 24 3 1 281 521246390 521246113 1.080000e-93 355.0
56 TraesCS7D01G021300 chr6B 86.219 283 36 2 1 283 504069528 504069807 3.950000e-78 303.0
57 TraesCS7D01G021300 chr7B 83.451 284 43 2 1 284 568476607 568476328 2.410000e-65 261.0
58 TraesCS7D01G021300 chr1B 74.124 371 77 14 1498 1860 679707786 679707427 1.530000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G021300 chr7D 10046399 10055114 8715 False 7544.00 14563 100.000000 1 8716 2 chr7D.!!$F4 8715
1 TraesCS7D01G021300 chr7D 237846563 237851695 5132 False 8637.00 8637 97.086000 1863 6983 1 chr7D.!!$F2 5120
2 TraesCS7D01G021300 chr7D 308587838 308592953 5115 False 8240.00 8240 95.746000 1863 6984 1 chr7D.!!$F3 5121
3 TraesCS7D01G021300 chr7D 10477636 10478511 875 True 686.00 686 81.011000 977 1856 1 chr7D.!!$R2 879
4 TraesCS7D01G021300 chr7D 10469403 10470288 885 True 601.00 601 79.287000 977 1856 1 chr7D.!!$R1 879
5 TraesCS7D01G021300 chr2D 105584320 105589436 5116 False 8562.00 8562 96.866000 1863 6983 1 chr2D.!!$F2 5120
6 TraesCS7D01G021300 chr2D 62394480 62399568 5088 True 8215.00 8215 95.741000 1863 6983 1 chr2D.!!$R1 5120
7 TraesCS7D01G021300 chr2D 421784364 421789055 4691 False 8183.00 8183 98.110000 2280 6984 1 chr2D.!!$F5 4704
8 TraesCS7D01G021300 chr2D 183604455 183609010 4555 False 8083.00 8083 98.684000 2427 6985 1 chr2D.!!$F4 4558
9 TraesCS7D01G021300 chr2D 86500669 86505214 4545 False 7747.00 7747 97.389000 2428 6985 1 chr2D.!!$F1 4557
10 TraesCS7D01G021300 chr2D 368811904 368817063 5159 False 4339.50 8196 93.957500 1864 6983 2 chr2D.!!$F6 5119
11 TraesCS7D01G021300 chr4D 72250901 72256014 5113 False 8525.00 8525 96.751000 1863 6983 1 chr4D.!!$F1 5120
12 TraesCS7D01G021300 chr4D 85498246 85503392 5146 True 8379.00 8379 96.152000 1863 6983 1 chr4D.!!$R1 5120
13 TraesCS7D01G021300 chr6D 277122454 277127582 5128 True 8512.00 8512 96.663000 1863 6983 1 chr6D.!!$R1 5120
14 TraesCS7D01G021300 chr3D 179931906 179937079 5173 True 8499.00 8499 96.473000 1861 6988 1 chr3D.!!$R1 5127
15 TraesCS7D01G021300 chr5D 73411818 73416967 5149 False 8469.00 8469 96.454000 1863 6983 1 chr5D.!!$F1 5120
16 TraesCS7D01G021300 chr1D 485031440 485036389 4949 True 8227.00 8227 96.738000 2059 6991 1 chr1D.!!$R1 4932
17 TraesCS7D01G021300 chr4A 729746931 729748377 1446 False 1234.50 1567 97.062500 976 7542 2 chr4A.!!$F7 6566
18 TraesCS7D01G021300 chr4A 729148251 729150605 2354 False 884.25 1546 94.372000 976 8716 4 chr4A.!!$F6 7740
19 TraesCS7D01G021300 chr4A 729796430 729797085 655 False 795.00 795 89.124000 8081 8716 1 chr4A.!!$F4 635
20 TraesCS7D01G021300 chr4A 729686102 729686975 873 False 689.00 689 81.124000 977 1856 1 chr4A.!!$F2 879
21 TraesCS7D01G021300 chr4A 718925785 718926670 885 True 640.00 640 80.089000 977 1856 1 chr4A.!!$R1 879
22 TraesCS7D01G021300 chr4A 729078794 729079676 882 True 625.00 625 79.799000 977 1856 1 chr4A.!!$R3 879
23 TraesCS7D01G021300 chr4A 729862691 729863573 882 False 586.00 586 79.088000 977 1856 1 chr4A.!!$F5 879
24 TraesCS7D01G021300 chr4A 728427962 728428844 882 True 569.00 569 78.754000 977 1856 1 chr4A.!!$R2 879
25 TraesCS7D01G021300 chr4A 730066358 730067018 660 True 481.00 481 80.148000 977 1640 1 chr4A.!!$R4 663
26 TraesCS7D01G021300 chr7A 9334613 9335217 604 False 387.00 387 78.444000 1245 1856 1 chr7A.!!$F1 611
27 TraesCS7D01G021300 chr1A 467194394 467195234 840 True 307.00 377 90.823667 1 963 3 chr1A.!!$R3 962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1356 1.403679 CGAGAGCCATCTTCGAAGTCT 59.596 52.381 23.85 18.22 35.3 3.24 F
1728 2154 0.035881 TCCTTGAGCTGCAGGTTGAG 59.964 55.000 21.18 18.99 0.0 3.02 F
1730 2156 0.035881 CTTGAGCTGCAGGTTGAGGA 59.964 55.000 21.18 3.89 0.0 3.71 F
2576 3423 1.048601 TTCTTTCTGGCGAGGTCTGT 58.951 50.000 0.00 0.00 0.0 3.41 F
3979 4826 1.377725 ATGTTCCTTCCGCTGCCAG 60.378 57.895 0.00 0.00 0.0 4.85 F
5018 5865 1.204113 CCTCTGCTTCTCCACCCCTT 61.204 60.000 0.00 0.00 0.0 3.95 F
6212 7066 2.130272 ATCTAGCTGTCACTCGTCCA 57.870 50.000 0.00 0.00 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2551 3398 0.035458 CTCGCCAGAAAGAACACCCT 59.965 55.000 0.00 0.0 0.00 4.34 R
2925 3772 0.745845 GCATGCTCCTGACGAACCAT 60.746 55.000 11.37 0.0 0.00 3.55 R
3245 4092 1.001633 GTGGAAGAAACCCGAGTAGCA 59.998 52.381 0.00 0.0 0.00 3.49 R
4399 5246 0.946221 AGCGGAGTCAGCACGAAAAG 60.946 55.000 17.72 0.0 37.01 2.27 R
5778 6627 2.024414 AGTGACCACAGAAGCAAAACC 58.976 47.619 2.78 0.0 0.00 3.27 R
6494 7348 0.967887 TAGCTCGCAACTCAGCCTCT 60.968 55.000 0.00 0.0 36.17 3.69 R
7973 8884 0.034756 TCAAAGGCGCTTCTGCTACA 59.965 50.000 7.64 0.0 36.97 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 2.579738 GAGACTCCAAGGCGTCCC 59.420 66.667 5.65 0.00 30.87 4.46
214 215 3.083997 GCTGGGACGGATGGAGGT 61.084 66.667 0.00 0.00 36.31 3.85
222 223 3.407967 GGATGGAGGTGGCCGGAA 61.408 66.667 5.05 0.00 0.00 4.30
281 282 3.499737 GACCCGCAGCAACATCGG 61.500 66.667 0.00 0.00 42.58 4.18
971 1355 1.833860 CGAGAGCCATCTTCGAAGTC 58.166 55.000 23.85 13.92 35.30 3.01
972 1356 1.403679 CGAGAGCCATCTTCGAAGTCT 59.596 52.381 23.85 18.22 35.30 3.24
973 1357 2.540769 CGAGAGCCATCTTCGAAGTCTC 60.541 54.545 23.85 23.43 35.30 3.36
974 1358 1.754226 AGAGCCATCTTCGAAGTCTCC 59.246 52.381 23.85 11.71 28.57 3.71
1054 1438 2.110578 TGGCTATTGCTGCTAGACTGA 58.889 47.619 0.00 0.00 39.59 3.41
1294 1699 2.821969 CAGAAATGCAGGCTGGTAAAGT 59.178 45.455 17.64 0.00 0.00 2.66
1728 2154 0.035881 TCCTTGAGCTGCAGGTTGAG 59.964 55.000 21.18 18.99 0.00 3.02
1729 2155 0.959372 CCTTGAGCTGCAGGTTGAGG 60.959 60.000 24.79 24.79 0.00 3.86
1730 2156 0.035881 CTTGAGCTGCAGGTTGAGGA 59.964 55.000 21.18 3.89 0.00 3.71
1815 2244 1.668419 CGGGTAAAATCCCTGCTGAG 58.332 55.000 0.25 0.00 44.95 3.35
1858 2287 7.748691 GGACTATTCCTAGTTCTCGAGTATT 57.251 40.000 13.13 1.88 38.33 1.89
1859 2288 8.168790 GGACTATTCCTAGTTCTCGAGTATTT 57.831 38.462 13.13 0.00 38.33 1.40
2311 3111 4.647615 CCGTATCGCGCTCCCCTG 62.648 72.222 5.56 0.00 39.71 4.45
2312 3112 3.900892 CGTATCGCGCTCCCCTGT 61.901 66.667 5.56 0.00 0.00 4.00
2313 3113 2.279517 GTATCGCGCTCCCCTGTG 60.280 66.667 5.56 0.00 0.00 3.66
2551 3398 2.049767 TGCGTGGCATCCGTCTCTA 61.050 57.895 0.00 0.00 31.71 2.43
2576 3423 1.048601 TTCTTTCTGGCGAGGTCTGT 58.951 50.000 0.00 0.00 0.00 3.41
2745 3592 3.118000 TGAGGAGGCTCTTCAGACGTATA 60.118 47.826 23.68 0.20 29.68 1.47
2925 3772 7.038729 CCTCTGGTGATGCCTTATATCTTTCTA 60.039 40.741 0.00 0.00 38.35 2.10
3663 4510 9.170734 CTTTTCATATGTCTTCTCATTCTTCCA 57.829 33.333 1.90 0.00 0.00 3.53
3777 4624 9.543231 TTTCTACTCCTTCTTATTCTGTTCCTA 57.457 33.333 0.00 0.00 0.00 2.94
3979 4826 1.377725 ATGTTCCTTCCGCTGCCAG 60.378 57.895 0.00 0.00 0.00 4.85
4012 4859 2.181777 CTCCGCTGCTGTCGCTTA 59.818 61.111 0.00 0.00 36.97 3.09
4047 4894 3.531934 TCAAGCAGTGACATCATCGAT 57.468 42.857 0.00 0.00 0.00 3.59
4233 5080 3.137176 AGTCCATTCTGATGTATGGGGTG 59.863 47.826 6.94 0.00 40.28 4.61
4399 5246 1.464997 GTTCTCTTCACCCATTCGTGC 59.535 52.381 0.00 0.00 33.57 5.34
4527 5374 1.595382 GGTGTGTCTGAGCGCAAGT 60.595 57.895 11.47 0.00 41.68 3.16
4593 5440 2.162681 CTCTTCCGCCTCATTTTTGGT 58.837 47.619 0.00 0.00 0.00 3.67
5018 5865 1.204113 CCTCTGCTTCTCCACCCCTT 61.204 60.000 0.00 0.00 0.00 3.95
5778 6627 3.121030 CTCGCGCCTGGTTTGAGG 61.121 66.667 0.00 0.00 36.03 3.86
6212 7066 2.130272 ATCTAGCTGTCACTCGTCCA 57.870 50.000 0.00 0.00 0.00 4.02
6307 7161 4.202020 CCTTCGTGTTCTCCGATATCTTCA 60.202 45.833 0.34 0.00 33.81 3.02
6494 7348 0.878523 CAGTTTCCCGTTCGAGTGCA 60.879 55.000 0.00 0.00 0.00 4.57
6560 7414 3.834489 TGGTTACGGTGGTTACTTCAA 57.166 42.857 0.00 0.00 0.00 2.69
7088 7946 3.694538 GTGGTGCATTGGGGTGGC 61.695 66.667 0.00 0.00 0.00 5.01
7103 7961 1.610967 TGGCACCATACCAGTCGGA 60.611 57.895 0.00 0.00 35.59 4.55
7118 7976 0.321564 TCGGAATGGAGCACCTGTTG 60.322 55.000 0.71 0.00 37.04 3.33
7142 8000 2.315176 CTCCAGGAGATCCGACTTGAT 58.685 52.381 11.62 0.00 42.08 2.57
7150 8008 1.281925 ATCCGACTTGATGGGGCCTT 61.282 55.000 0.84 0.00 0.00 4.35
7264 8122 9.639563 TCACATCTAGAAGATCAAGAACTAGAT 57.360 33.333 1.17 0.00 45.61 1.98
7317 8175 9.109393 TGGCTGTAACTCTGATTATTAATGAAC 57.891 33.333 0.00 0.00 0.00 3.18
7424 8293 4.400251 TGTGATTGGAAGATCATGAAAGCC 59.600 41.667 0.00 0.00 38.25 4.35
7518 8390 6.368779 TTGCTAGGTCAGGTAGTTAACATT 57.631 37.500 8.61 0.00 0.00 2.71
7538 8410 5.588648 ACATTGTATGCCTGTGTACATAACC 59.411 40.000 0.00 0.00 31.48 2.85
7588 8460 4.952262 TCATGCTTGAAAGTGATACAGC 57.048 40.909 0.00 0.00 0.00 4.40
7589 8461 4.582869 TCATGCTTGAAAGTGATACAGCT 58.417 39.130 0.00 0.00 0.00 4.24
7592 8464 5.772825 TGCTTGAAAGTGATACAGCTTTT 57.227 34.783 0.00 0.00 35.35 2.27
7594 8466 7.270757 TGCTTGAAAGTGATACAGCTTTTTA 57.729 32.000 0.00 0.00 35.35 1.52
7595 8467 7.711846 TGCTTGAAAGTGATACAGCTTTTTAA 58.288 30.769 0.00 0.00 35.35 1.52
7596 8468 8.194104 TGCTTGAAAGTGATACAGCTTTTTAAA 58.806 29.630 0.00 0.00 35.35 1.52
7597 8469 8.694394 GCTTGAAAGTGATACAGCTTTTTAAAG 58.306 33.333 0.00 0.00 35.35 1.85
7599 8471 9.515020 TTGAAAGTGATACAGCTTTTTAAAGTG 57.485 29.630 4.33 4.37 38.28 3.16
7601 8473 9.170584 GAAAGTGATACAGCTTTTTAAAGTGTC 57.829 33.333 11.17 0.00 38.28 3.67
7603 8475 8.089115 AGTGATACAGCTTTTTAAAGTGTCTC 57.911 34.615 11.17 11.44 38.28 3.36
7663 8574 1.542915 GAGCTTTGCCTCATTCTGCAA 59.457 47.619 0.00 0.00 45.12 4.08
7665 8576 2.565834 AGCTTTGCCTCATTCTGCAATT 59.434 40.909 0.00 0.00 45.96 2.32
7666 8577 3.765511 AGCTTTGCCTCATTCTGCAATTA 59.234 39.130 0.00 0.00 45.96 1.40
7667 8578 4.221262 AGCTTTGCCTCATTCTGCAATTAA 59.779 37.500 0.00 0.00 45.96 1.40
7668 8579 5.105064 AGCTTTGCCTCATTCTGCAATTAAT 60.105 36.000 0.00 0.00 45.96 1.40
7669 8580 5.006358 GCTTTGCCTCATTCTGCAATTAATG 59.994 40.000 8.93 8.93 45.96 1.90
7671 8582 5.664294 TGCCTCATTCTGCAATTAATGTT 57.336 34.783 13.02 0.00 35.16 2.71
7672 8583 5.653507 TGCCTCATTCTGCAATTAATGTTC 58.346 37.500 13.02 6.86 35.16 3.18
7673 8584 5.419788 TGCCTCATTCTGCAATTAATGTTCT 59.580 36.000 13.02 0.00 35.16 3.01
7675 8586 6.474751 GCCTCATTCTGCAATTAATGTTCTTC 59.525 38.462 13.02 1.43 35.16 2.87
7676 8587 7.541162 CCTCATTCTGCAATTAATGTTCTTCA 58.459 34.615 13.02 0.00 35.16 3.02
7677 8588 7.701078 CCTCATTCTGCAATTAATGTTCTTCAG 59.299 37.037 13.02 5.30 35.16 3.02
7716 8627 6.881602 CCTAGAAATAATGGGAAGATGGTAGC 59.118 42.308 0.00 0.00 0.00 3.58
7733 8644 0.250640 AGCAACTGCAAGCAGCTACT 60.251 50.000 21.11 12.69 44.19 2.57
7769 8680 2.852714 TGGCCCATCTTGGATGAAAT 57.147 45.000 0.00 0.00 40.96 2.17
7778 8689 8.203485 GCCCATCTTGGATGAAATTATTTTGTA 58.797 33.333 8.85 0.00 40.96 2.41
7817 8728 2.525055 TCGCAACAACACAAGCTTTTC 58.475 42.857 0.00 0.00 0.00 2.29
7818 8729 2.095008 TCGCAACAACACAAGCTTTTCA 60.095 40.909 0.00 0.00 0.00 2.69
7819 8730 2.279659 CGCAACAACACAAGCTTTTCAG 59.720 45.455 0.00 0.00 0.00 3.02
7841 8752 2.417516 GAGCAGCTCGGCCGATTA 59.582 61.111 31.19 6.57 0.00 1.75
7865 8776 2.062636 AGGTTCACAGGGTGTTGGTAT 58.937 47.619 0.00 0.00 34.79 2.73
7871 8782 2.232941 CACAGGGTGTTGGTATACGTCT 59.767 50.000 0.00 0.00 0.00 4.18
7875 8786 3.773119 AGGGTGTTGGTATACGTCTGAAT 59.227 43.478 0.00 0.00 0.00 2.57
7933 8844 0.173708 GAGACGGCACCTCCTTGTAG 59.826 60.000 0.00 0.00 0.00 2.74
7936 8847 1.448540 CGGCACCTCCTTGTAGCAG 60.449 63.158 0.00 0.00 0.00 4.24
7940 8851 0.108615 CACCTCCTTGTAGCAGGTCG 60.109 60.000 0.00 0.00 38.57 4.79
7941 8852 0.251653 ACCTCCTTGTAGCAGGTCGA 60.252 55.000 0.00 0.00 35.47 4.20
7942 8853 0.457851 CCTCCTTGTAGCAGGTCGAG 59.542 60.000 0.00 0.00 35.15 4.04
7943 8854 0.179124 CTCCTTGTAGCAGGTCGAGC 60.179 60.000 6.48 6.48 35.15 5.03
7944 8855 0.898326 TCCTTGTAGCAGGTCGAGCA 60.898 55.000 18.15 0.00 35.15 4.26
7959 8870 3.386592 GCACCAGCTGAGACTCCT 58.613 61.111 17.39 0.00 37.91 3.69
7960 8871 1.217779 GCACCAGCTGAGACTCCTC 59.782 63.158 17.39 0.00 39.86 3.71
7961 8872 1.896694 CACCAGCTGAGACTCCTCC 59.103 63.158 17.39 0.00 38.66 4.30
7962 8873 0.614415 CACCAGCTGAGACTCCTCCT 60.614 60.000 17.39 0.00 38.66 3.69
7963 8874 1.003646 ACCAGCTGAGACTCCTCCTA 58.996 55.000 17.39 0.00 38.66 2.94
7964 8875 1.573376 ACCAGCTGAGACTCCTCCTAT 59.427 52.381 17.39 0.00 38.66 2.57
7965 8876 2.238521 CCAGCTGAGACTCCTCCTATC 58.761 57.143 17.39 0.00 38.66 2.08
7966 8877 2.238521 CAGCTGAGACTCCTCCTATCC 58.761 57.143 8.42 0.00 38.66 2.59
7967 8878 2.143602 AGCTGAGACTCCTCCTATCCT 58.856 52.381 0.00 0.00 38.66 3.24
7968 8879 2.108250 AGCTGAGACTCCTCCTATCCTC 59.892 54.545 0.00 0.00 38.66 3.71
7969 8880 2.817839 GCTGAGACTCCTCCTATCCTCC 60.818 59.091 0.00 0.00 38.66 4.30
7970 8881 1.783979 TGAGACTCCTCCTATCCTCCC 59.216 57.143 0.00 0.00 38.66 4.30
7971 8882 0.774908 AGACTCCTCCTATCCTCCCG 59.225 60.000 0.00 0.00 0.00 5.14
7972 8883 0.479378 GACTCCTCCTATCCTCCCGT 59.521 60.000 0.00 0.00 0.00 5.28
7973 8884 0.935194 ACTCCTCCTATCCTCCCGTT 59.065 55.000 0.00 0.00 0.00 4.44
7974 8885 1.333177 CTCCTCCTATCCTCCCGTTG 58.667 60.000 0.00 0.00 0.00 4.10
7975 8886 0.635009 TCCTCCTATCCTCCCGTTGT 59.365 55.000 0.00 0.00 0.00 3.32
7976 8887 1.854939 TCCTCCTATCCTCCCGTTGTA 59.145 52.381 0.00 0.00 0.00 2.41
7977 8888 2.158505 TCCTCCTATCCTCCCGTTGTAG 60.159 54.545 0.00 0.00 0.00 2.74
7978 8889 1.614413 CTCCTATCCTCCCGTTGTAGC 59.386 57.143 0.00 0.00 0.00 3.58
7979 8890 1.063492 TCCTATCCTCCCGTTGTAGCA 60.063 52.381 0.00 0.00 0.00 3.49
7980 8891 1.341531 CCTATCCTCCCGTTGTAGCAG 59.658 57.143 0.00 0.00 0.00 4.24
7981 8892 2.307768 CTATCCTCCCGTTGTAGCAGA 58.692 52.381 0.00 0.00 0.00 4.26
7982 8893 1.568504 ATCCTCCCGTTGTAGCAGAA 58.431 50.000 0.00 0.00 0.00 3.02
7983 8894 0.895530 TCCTCCCGTTGTAGCAGAAG 59.104 55.000 0.00 0.00 0.00 2.85
7984 8895 0.741221 CCTCCCGTTGTAGCAGAAGC 60.741 60.000 0.00 0.00 42.56 3.86
7994 8905 3.343972 GCAGAAGCGCCTTTGACA 58.656 55.556 2.29 0.00 0.00 3.58
7995 8906 1.654220 GCAGAAGCGCCTTTGACAA 59.346 52.632 2.29 0.00 0.00 3.18
7996 8907 0.242017 GCAGAAGCGCCTTTGACAAT 59.758 50.000 2.29 0.00 0.00 2.71
7997 8908 1.336240 GCAGAAGCGCCTTTGACAATT 60.336 47.619 2.29 0.00 0.00 2.32
7998 8909 2.863704 GCAGAAGCGCCTTTGACAATTT 60.864 45.455 2.29 0.00 0.00 1.82
7999 8910 3.611530 GCAGAAGCGCCTTTGACAATTTA 60.612 43.478 2.29 0.00 0.00 1.40
8000 8911 4.737054 CAGAAGCGCCTTTGACAATTTAT 58.263 39.130 2.29 0.00 0.00 1.40
8001 8912 4.560035 CAGAAGCGCCTTTGACAATTTATG 59.440 41.667 2.29 0.00 0.00 1.90
8002 8913 3.508744 AGCGCCTTTGACAATTTATGG 57.491 42.857 2.29 0.00 0.00 2.74
8003 8914 3.088532 AGCGCCTTTGACAATTTATGGA 58.911 40.909 2.29 0.00 0.00 3.41
8004 8915 3.129287 AGCGCCTTTGACAATTTATGGAG 59.871 43.478 2.29 0.00 0.00 3.86
8005 8916 3.438360 CGCCTTTGACAATTTATGGAGC 58.562 45.455 0.00 0.00 0.00 4.70
8006 8917 3.129287 CGCCTTTGACAATTTATGGAGCT 59.871 43.478 0.00 0.00 0.00 4.09
8007 8918 4.676546 GCCTTTGACAATTTATGGAGCTC 58.323 43.478 4.71 4.71 0.00 4.09
8008 8919 4.158394 GCCTTTGACAATTTATGGAGCTCA 59.842 41.667 17.19 1.87 0.00 4.26
8009 8920 5.163478 GCCTTTGACAATTTATGGAGCTCAT 60.163 40.000 17.19 9.74 39.78 2.90
8010 8921 6.628844 GCCTTTGACAATTTATGGAGCTCATT 60.629 38.462 17.19 3.06 37.30 2.57
8011 8922 6.976925 CCTTTGACAATTTATGGAGCTCATTC 59.023 38.462 17.19 0.00 37.30 2.67
8012 8923 6.455360 TTGACAATTTATGGAGCTCATTCC 57.545 37.500 17.19 0.00 37.30 3.01
8022 8933 5.901413 TGGAGCTCATTCCAGAGAATAAT 57.099 39.130 17.19 0.00 42.24 1.28
8023 8934 6.257994 TGGAGCTCATTCCAGAGAATAATT 57.742 37.500 17.19 0.00 42.24 1.40
8024 8935 6.060136 TGGAGCTCATTCCAGAGAATAATTG 58.940 40.000 17.19 0.00 42.24 2.32
8025 8936 6.126681 TGGAGCTCATTCCAGAGAATAATTGA 60.127 38.462 17.19 0.00 42.24 2.57
8026 8937 6.769822 GGAGCTCATTCCAGAGAATAATTGAA 59.230 38.462 17.19 0.00 40.89 2.69
8027 8938 7.284034 GGAGCTCATTCCAGAGAATAATTGAAA 59.716 37.037 17.19 0.00 40.89 2.69
8028 8939 8.763984 AGCTCATTCCAGAGAATAATTGAAAT 57.236 30.769 0.00 0.00 40.89 2.17
8029 8940 8.630917 AGCTCATTCCAGAGAATAATTGAAATG 58.369 33.333 0.00 0.00 40.89 2.32
8030 8941 8.411683 GCTCATTCCAGAGAATAATTGAAATGT 58.588 33.333 0.00 0.00 40.89 2.71
8031 8942 9.947669 CTCATTCCAGAGAATAATTGAAATGTC 57.052 33.333 0.00 0.00 40.89 3.06
8032 8943 8.906867 TCATTCCAGAGAATAATTGAAATGTCC 58.093 33.333 0.00 0.00 40.89 4.02
8033 8944 8.689061 CATTCCAGAGAATAATTGAAATGTCCA 58.311 33.333 0.00 0.00 40.89 4.02
8034 8945 8.827832 TTCCAGAGAATAATTGAAATGTCCAT 57.172 30.769 0.00 0.00 0.00 3.41
8035 8946 8.455903 TCCAGAGAATAATTGAAATGTCCATC 57.544 34.615 0.00 0.00 0.00 3.51
8036 8947 7.503566 TCCAGAGAATAATTGAAATGTCCATCC 59.496 37.037 0.00 0.00 0.00 3.51
8037 8948 7.504911 CCAGAGAATAATTGAAATGTCCATCCT 59.495 37.037 0.00 0.00 0.00 3.24
8038 8949 8.910944 CAGAGAATAATTGAAATGTCCATCCTT 58.089 33.333 0.00 0.00 0.00 3.36
8039 8950 9.129532 AGAGAATAATTGAAATGTCCATCCTTC 57.870 33.333 0.00 0.00 0.00 3.46
8040 8951 9.129532 GAGAATAATTGAAATGTCCATCCTTCT 57.870 33.333 0.00 0.00 0.00 2.85
8041 8952 9.129532 AGAATAATTGAAATGTCCATCCTTCTC 57.870 33.333 0.00 0.00 0.00 2.87
8042 8953 9.129532 GAATAATTGAAATGTCCATCCTTCTCT 57.870 33.333 0.00 0.00 0.00 3.10
8043 8954 9.484806 AATAATTGAAATGTCCATCCTTCTCTT 57.515 29.630 0.00 0.00 0.00 2.85
8044 8955 7.787623 AATTGAAATGTCCATCCTTCTCTTT 57.212 32.000 0.00 0.00 0.00 2.52
8045 8956 8.884124 AATTGAAATGTCCATCCTTCTCTTTA 57.116 30.769 0.00 0.00 0.00 1.85
8046 8957 9.484806 AATTGAAATGTCCATCCTTCTCTTTAT 57.515 29.630 0.00 0.00 0.00 1.40
8048 8959 8.964476 TGAAATGTCCATCCTTCTCTTTATAC 57.036 34.615 0.00 0.00 0.00 1.47
8049 8960 8.772250 TGAAATGTCCATCCTTCTCTTTATACT 58.228 33.333 0.00 0.00 0.00 2.12
8050 8961 9.620259 GAAATGTCCATCCTTCTCTTTATACTT 57.380 33.333 0.00 0.00 0.00 2.24
8051 8962 9.981460 AAATGTCCATCCTTCTCTTTATACTTT 57.019 29.630 0.00 0.00 0.00 2.66
8052 8963 8.970859 ATGTCCATCCTTCTCTTTATACTTTG 57.029 34.615 0.00 0.00 0.00 2.77
8053 8964 6.823689 TGTCCATCCTTCTCTTTATACTTTGC 59.176 38.462 0.00 0.00 0.00 3.68
8054 8965 7.051000 GTCCATCCTTCTCTTTATACTTTGCT 58.949 38.462 0.00 0.00 0.00 3.91
8055 8966 7.011857 GTCCATCCTTCTCTTTATACTTTGCTG 59.988 40.741 0.00 0.00 0.00 4.41
8056 8967 6.825721 CCATCCTTCTCTTTATACTTTGCTGT 59.174 38.462 0.00 0.00 0.00 4.40
8057 8968 7.201679 CCATCCTTCTCTTTATACTTTGCTGTG 60.202 40.741 0.00 0.00 0.00 3.66
8058 8969 7.004555 TCCTTCTCTTTATACTTTGCTGTGA 57.995 36.000 0.00 0.00 0.00 3.58
8059 8970 7.624549 TCCTTCTCTTTATACTTTGCTGTGAT 58.375 34.615 0.00 0.00 0.00 3.06
8060 8971 7.766278 TCCTTCTCTTTATACTTTGCTGTGATC 59.234 37.037 0.00 0.00 0.00 2.92
8061 8972 7.768120 CCTTCTCTTTATACTTTGCTGTGATCT 59.232 37.037 0.00 0.00 0.00 2.75
8062 8973 8.709386 TTCTCTTTATACTTTGCTGTGATCTC 57.291 34.615 0.00 0.00 0.00 2.75
8063 8974 8.072321 TCTCTTTATACTTTGCTGTGATCTCT 57.928 34.615 0.00 0.00 0.00 3.10
8064 8975 8.535335 TCTCTTTATACTTTGCTGTGATCTCTT 58.465 33.333 0.00 0.00 0.00 2.85
8065 8976 8.709386 TCTTTATACTTTGCTGTGATCTCTTC 57.291 34.615 0.00 0.00 0.00 2.87
8066 8977 8.535335 TCTTTATACTTTGCTGTGATCTCTTCT 58.465 33.333 0.00 0.00 0.00 2.85
8067 8978 9.160496 CTTTATACTTTGCTGTGATCTCTTCTT 57.840 33.333 0.00 0.00 0.00 2.52
8068 8979 8.709386 TTATACTTTGCTGTGATCTCTTCTTC 57.291 34.615 0.00 0.00 0.00 2.87
8069 8980 5.226194 ACTTTGCTGTGATCTCTTCTTCT 57.774 39.130 0.00 0.00 0.00 2.85
8070 8981 5.619220 ACTTTGCTGTGATCTCTTCTTCTT 58.381 37.500 0.00 0.00 0.00 2.52
8071 8982 6.060788 ACTTTGCTGTGATCTCTTCTTCTTT 58.939 36.000 0.00 0.00 0.00 2.52
8072 8983 6.545298 ACTTTGCTGTGATCTCTTCTTCTTTT 59.455 34.615 0.00 0.00 0.00 2.27
8073 8984 6.551385 TTGCTGTGATCTCTTCTTCTTTTC 57.449 37.500 0.00 0.00 0.00 2.29
8074 8985 5.862845 TGCTGTGATCTCTTCTTCTTTTCT 58.137 37.500 0.00 0.00 0.00 2.52
8075 8986 5.931146 TGCTGTGATCTCTTCTTCTTTTCTC 59.069 40.000 0.00 0.00 0.00 2.87
8076 8987 5.062058 GCTGTGATCTCTTCTTCTTTTCTCG 59.938 44.000 0.00 0.00 0.00 4.04
8077 8988 6.090483 TGTGATCTCTTCTTCTTTTCTCGT 57.910 37.500 0.00 0.00 0.00 4.18
8078 8989 6.153067 TGTGATCTCTTCTTCTTTTCTCGTC 58.847 40.000 0.00 0.00 0.00 4.20
8079 8990 5.575218 GTGATCTCTTCTTCTTTTCTCGTCC 59.425 44.000 0.00 0.00 0.00 4.79
8113 9024 0.535780 CTCACTGCTGGGCACTTCAA 60.536 55.000 0.00 0.00 33.79 2.69
8132 9044 4.594970 TCAAACAGGTCCAAAAGTCAGAA 58.405 39.130 0.00 0.00 0.00 3.02
8143 9055 7.706607 GGTCCAAAAGTCAGAAATAAATATGGC 59.293 37.037 0.00 0.00 0.00 4.40
8233 9145 7.385267 TGACAAAACAATTAAAGCAGGCATAT 58.615 30.769 0.00 0.00 0.00 1.78
8245 9157 5.097742 AGCAGGCATATAAACAGTGTACA 57.902 39.130 0.00 0.00 0.00 2.90
8276 9188 4.158394 CCATAGTTTTCTGATTGGGGTGTG 59.842 45.833 0.00 0.00 0.00 3.82
8277 9189 1.963515 AGTTTTCTGATTGGGGTGTGC 59.036 47.619 0.00 0.00 0.00 4.57
8308 9220 1.085091 GACAGAAGCATGCAGGTGAG 58.915 55.000 21.98 6.89 0.00 3.51
8325 9259 6.226787 CAGGTGAGAGAAATCAGTACACTTT 58.773 40.000 0.00 0.00 0.00 2.66
8389 9323 3.120321 ACACGACTGAATGCCAACTAA 57.880 42.857 0.00 0.00 0.00 2.24
8429 9363 2.161855 GGTTGATTGATGTCCACTGCA 58.838 47.619 0.00 0.00 0.00 4.41
8457 9391 3.306472 TTTGGCTACCCTGTTTGAGTT 57.694 42.857 0.00 0.00 0.00 3.01
8485 9420 3.206150 ACAGCACTAGTCCTGTTGTTTG 58.794 45.455 13.93 0.00 39.11 2.93
8604 9539 6.145535 GCCATATTATTCCAAGAAAAGCTCG 58.854 40.000 0.00 0.00 0.00 5.03
8677 9614 2.880890 GAGTCTGAACATTTGCCACAGT 59.119 45.455 0.00 0.00 0.00 3.55
8687 9624 2.359230 GCCACAGTGAGCAGGACC 60.359 66.667 0.62 0.00 0.00 4.46
8688 9625 3.150949 CCACAGTGAGCAGGACCA 58.849 61.111 0.62 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.685380 CCTTGGAGTCTCGGGCCT 60.685 66.667 0.84 0.00 0.00 5.19
83 84 1.539665 AAAAAGGGGACGCCTTGGA 59.460 52.632 23.32 0.00 0.00 3.53
98 99 0.034337 CCGTCTCCTGGGTCGAAAAA 59.966 55.000 0.00 0.00 0.00 1.94
99 100 1.669440 CCGTCTCCTGGGTCGAAAA 59.331 57.895 0.00 0.00 0.00 2.29
199 200 2.687200 CCACCTCCATCCGTCCCA 60.687 66.667 0.00 0.00 0.00 4.37
963 1347 0.671796 TGCGAACAGGAGACTTCGAA 59.328 50.000 0.00 0.00 39.55 3.71
964 1348 0.241213 CTGCGAACAGGAGACTTCGA 59.759 55.000 4.07 0.00 41.23 3.71
965 1349 0.241213 TCTGCGAACAGGAGACTTCG 59.759 55.000 0.00 0.00 42.62 3.79
971 1355 2.366916 AGGGATAATCTGCGAACAGGAG 59.633 50.000 0.00 0.00 44.59 3.69
972 1356 2.103094 CAGGGATAATCTGCGAACAGGA 59.897 50.000 0.00 0.00 44.59 3.86
973 1357 2.103094 TCAGGGATAATCTGCGAACAGG 59.897 50.000 0.00 0.00 44.59 4.00
974 1358 3.388308 CTCAGGGATAATCTGCGAACAG 58.612 50.000 0.00 0.00 45.95 3.16
1054 1438 9.773328 CAACAATATAAATGATCGAACTTGTGT 57.227 29.630 0.00 0.00 0.00 3.72
1121 1514 2.357050 CCCCTAACAATGATGAGCACCA 60.357 50.000 0.00 0.00 0.00 4.17
1294 1699 6.692849 ATGAACTATATCTGAAGGGATGCA 57.307 37.500 0.00 0.00 0.00 3.96
1728 2154 1.535833 TCTCCTCAGTTGACGTCTCC 58.464 55.000 17.92 7.02 0.00 3.71
1729 2155 3.191581 TGAATCTCCTCAGTTGACGTCTC 59.808 47.826 17.92 9.96 0.00 3.36
1730 2156 3.157881 TGAATCTCCTCAGTTGACGTCT 58.842 45.455 17.92 0.00 0.00 4.18
1815 2244 4.770010 AGTCCTGTGCCTAATATAGCTCTC 59.230 45.833 0.00 0.00 0.00 3.20
2551 3398 0.035458 CTCGCCAGAAAGAACACCCT 59.965 55.000 0.00 0.00 0.00 4.34
2605 3452 2.439883 GAGTCGGCGGAGTAGGGT 60.440 66.667 7.21 0.00 0.00 4.34
2745 3592 4.644685 AGTGTAAACAGACAAAGCACCATT 59.355 37.500 0.00 0.00 0.00 3.16
2925 3772 0.745845 GCATGCTCCTGACGAACCAT 60.746 55.000 11.37 0.00 0.00 3.55
3245 4092 1.001633 GTGGAAGAAACCCGAGTAGCA 59.998 52.381 0.00 0.00 0.00 3.49
3663 4510 2.667137 CGAGCGAAGAGAAGACAAAGT 58.333 47.619 0.00 0.00 0.00 2.66
3727 4574 3.107601 TGGCCTCTACTAGCAACAGAAT 58.892 45.455 3.32 0.00 0.00 2.40
3777 4624 2.744202 GTCGAGGAACATGAGCAACATT 59.256 45.455 0.00 0.00 37.07 2.71
3919 4766 2.579201 CCTGAGAATCACGGCGGT 59.421 61.111 13.24 0.00 42.56 5.68
3979 4826 2.045926 AGGAACTGGCGATGGTGC 60.046 61.111 0.00 0.00 37.18 5.01
4012 4859 4.074970 CTGCTTGAAGGAACCAGTAACAT 58.925 43.478 0.00 0.00 0.00 2.71
4037 4884 4.573607 CACAGATGACCAAATCGATGATGT 59.426 41.667 0.00 0.00 0.00 3.06
4047 4894 3.476552 GAGAACCACACAGATGACCAAA 58.523 45.455 0.00 0.00 0.00 3.28
4233 5080 0.949105 TTCGAAGTGAAAGGAGCCGC 60.949 55.000 0.00 0.00 32.37 6.53
4399 5246 0.946221 AGCGGAGTCAGCACGAAAAG 60.946 55.000 17.72 0.00 37.01 2.27
4478 5325 1.980765 TGAGCACCAGGACAAGAGAAT 59.019 47.619 0.00 0.00 0.00 2.40
4593 5440 1.215673 AGAAGTGGAGATAGCCTCGGA 59.784 52.381 0.00 0.00 42.89 4.55
4862 5709 4.031089 CGAGACTCATCAAAAGTCACATCG 59.969 45.833 2.82 3.29 44.54 3.84
5018 5865 2.047655 GGTGGCGGTGAATCGACA 60.048 61.111 0.00 0.00 46.92 4.35
5296 6144 2.910688 AGAAGTCGGCTCAAGAACAA 57.089 45.000 0.00 0.00 0.00 2.83
5778 6627 2.024414 AGTGACCACAGAAGCAAAACC 58.976 47.619 2.78 0.00 0.00 3.27
6212 7066 7.453126 AGAATATGAACCGGATAAGAGATGTCT 59.547 37.037 9.46 0.00 32.81 3.41
6307 7161 2.418910 CGGTGAGAGATCGTGCCCT 61.419 63.158 0.00 0.00 0.00 5.19
6494 7348 0.967887 TAGCTCGCAACTCAGCCTCT 60.968 55.000 0.00 0.00 36.17 3.69
6560 7414 4.222124 AGTGACAGAAACACCAAAGTCT 57.778 40.909 0.00 0.00 38.82 3.24
6900 7758 4.079787 AGGTGTGGTACATATGCAGGAAAT 60.080 41.667 1.58 0.00 44.52 2.17
7118 7976 1.758514 TCGGATCTCCTGGAGGTGC 60.759 63.158 23.00 20.34 36.34 5.01
7142 8000 1.203162 ACAACATCATGAAAGGCCCCA 60.203 47.619 0.00 0.00 0.00 4.96
7150 8008 0.110283 CGCGCACACAACATCATGAA 60.110 50.000 8.75 0.00 0.00 2.57
7269 8127 7.387948 AGCCATTACAGACAGTTAGTTTACAAG 59.612 37.037 0.00 0.00 0.00 3.16
7281 8139 4.867047 CAGAGTTACAGCCATTACAGACAG 59.133 45.833 0.00 0.00 0.00 3.51
7285 8143 8.668510 AATAATCAGAGTTACAGCCATTACAG 57.331 34.615 0.00 0.00 0.00 2.74
7317 8175 0.883814 GGGAAGATCAGGAGCATGCG 60.884 60.000 13.01 0.00 0.00 4.73
7417 8286 2.947243 GCATCCTCAATCCTGGCTTTCA 60.947 50.000 0.00 0.00 0.00 2.69
7421 8290 0.851469 ATGCATCCTCAATCCTGGCT 59.149 50.000 0.00 0.00 0.00 4.75
7424 8293 3.028850 ACCAAATGCATCCTCAATCCTG 58.971 45.455 0.00 0.00 0.00 3.86
7518 8390 3.431068 CCGGTTATGTACACAGGCATACA 60.431 47.826 0.00 0.00 35.82 2.29
7538 8410 3.470888 AGCTCCCGTCCAATCCCG 61.471 66.667 0.00 0.00 0.00 5.14
7568 8440 4.959596 AGCTGTATCACTTTCAAGCATG 57.040 40.909 0.00 0.00 0.00 4.06
7570 8442 5.772825 AAAAGCTGTATCACTTTCAAGCA 57.227 34.783 0.00 0.00 35.10 3.91
7579 8451 8.089115 AGAGACACTTTAAAAAGCTGTATCAC 57.911 34.615 21.17 9.02 38.80 3.06
7583 8455 6.588204 TGGAGAGACACTTTAAAAAGCTGTA 58.412 36.000 2.37 0.00 39.63 2.74
7584 8456 5.437060 TGGAGAGACACTTTAAAAAGCTGT 58.563 37.500 2.37 6.42 39.63 4.40
7586 8458 7.001073 AGATTGGAGAGACACTTTAAAAAGCT 58.999 34.615 2.37 0.00 39.63 3.74
7587 8459 7.208225 AGATTGGAGAGACACTTTAAAAAGC 57.792 36.000 2.37 0.00 39.63 3.51
7592 8464 9.793259 AACAAATAGATTGGAGAGACACTTTAA 57.207 29.630 0.00 0.00 43.66 1.52
7594 8466 7.391833 GGAACAAATAGATTGGAGAGACACTTT 59.608 37.037 0.00 0.00 43.66 2.66
7595 8467 6.881602 GGAACAAATAGATTGGAGAGACACTT 59.118 38.462 0.00 0.00 43.66 3.16
7596 8468 6.214412 AGGAACAAATAGATTGGAGAGACACT 59.786 38.462 0.00 0.00 43.66 3.55
7597 8469 6.314896 CAGGAACAAATAGATTGGAGAGACAC 59.685 42.308 0.00 0.00 43.66 3.67
7599 8471 6.410540 ACAGGAACAAATAGATTGGAGAGAC 58.589 40.000 0.00 0.00 43.66 3.36
7601 8473 7.041508 GCATACAGGAACAAATAGATTGGAGAG 60.042 40.741 0.00 0.00 43.66 3.20
7603 8475 6.543465 TGCATACAGGAACAAATAGATTGGAG 59.457 38.462 0.00 0.00 43.66 3.86
7663 8574 4.018050 AGCCCAGTCCTGAAGAACATTAAT 60.018 41.667 0.00 0.00 0.00 1.40
7665 8576 2.912956 AGCCCAGTCCTGAAGAACATTA 59.087 45.455 0.00 0.00 0.00 1.90
7666 8577 1.707427 AGCCCAGTCCTGAAGAACATT 59.293 47.619 0.00 0.00 0.00 2.71
7667 8578 1.280421 GAGCCCAGTCCTGAAGAACAT 59.720 52.381 0.00 0.00 0.00 2.71
7668 8579 0.687354 GAGCCCAGTCCTGAAGAACA 59.313 55.000 0.00 0.00 0.00 3.18
7669 8580 0.687354 TGAGCCCAGTCCTGAAGAAC 59.313 55.000 0.00 0.00 0.00 3.01
7671 8582 0.979665 CTTGAGCCCAGTCCTGAAGA 59.020 55.000 0.00 0.00 0.00 2.87
7672 8583 0.676151 GCTTGAGCCCAGTCCTGAAG 60.676 60.000 0.00 0.00 34.31 3.02
7673 8584 1.376466 GCTTGAGCCCAGTCCTGAA 59.624 57.895 0.00 0.00 34.31 3.02
7716 8627 2.693069 AGTAGTAGCTGCTTGCAGTTG 58.307 47.619 21.55 0.61 45.94 3.16
7733 8644 3.343617 GGCCATAGAGTTTGCACAAGTA 58.656 45.455 0.00 0.00 0.00 2.24
7778 8689 4.122776 GCGATGTTCAGAGACATGGTAAT 58.877 43.478 0.00 0.00 40.21 1.89
7788 8699 2.287644 TGTGTTGTTGCGATGTTCAGAG 59.712 45.455 0.00 0.00 0.00 3.35
7817 8728 4.834453 CCGAGCTGCTCCCTGCTG 62.834 72.222 22.97 8.38 44.92 4.41
7833 8744 3.564225 CCTGTGAACCTATTTAATCGGCC 59.436 47.826 0.00 0.00 0.00 6.13
7841 8752 3.117284 ACCAACACCCTGTGAACCTATTT 60.117 43.478 0.49 0.00 36.96 1.40
7865 8776 8.500773 GTCTTTCAACCAAATAATTCAGACGTA 58.499 33.333 0.00 0.00 0.00 3.57
7875 8786 9.834628 GTCGATAATTGTCTTTCAACCAAATAA 57.165 29.630 0.46 0.00 38.97 1.40
7888 8799 5.680619 TGGCTAAATGGTCGATAATTGTCT 58.319 37.500 0.46 0.00 0.00 3.41
7942 8853 1.217779 GAGGAGTCTCAGCTGGTGC 59.782 63.158 15.13 4.04 39.74 5.01
7943 8854 0.614415 AGGAGGAGTCTCAGCTGGTG 60.614 60.000 15.13 7.59 41.69 4.17
7944 8855 1.003646 TAGGAGGAGTCTCAGCTGGT 58.996 55.000 15.13 0.00 41.69 4.00
7946 8857 2.158475 AGGATAGGAGGAGTCTCAGCTG 60.158 54.545 7.63 7.63 41.69 4.24
7947 8858 2.108250 GAGGATAGGAGGAGTCTCAGCT 59.892 54.545 1.47 0.00 41.69 4.24
7948 8859 2.514803 GAGGATAGGAGGAGTCTCAGC 58.485 57.143 1.47 0.00 41.69 4.26
7949 8860 2.225017 GGGAGGATAGGAGGAGTCTCAG 60.225 59.091 1.47 0.00 41.69 3.35
7950 8861 1.783979 GGGAGGATAGGAGGAGTCTCA 59.216 57.143 1.47 0.00 41.69 3.27
7951 8862 1.271707 CGGGAGGATAGGAGGAGTCTC 60.272 61.905 0.00 0.00 39.25 3.36
7952 8863 0.774908 CGGGAGGATAGGAGGAGTCT 59.225 60.000 0.00 0.00 0.00 3.24
7953 8864 0.479378 ACGGGAGGATAGGAGGAGTC 59.521 60.000 0.00 0.00 0.00 3.36
7954 8865 0.935194 AACGGGAGGATAGGAGGAGT 59.065 55.000 0.00 0.00 0.00 3.85
7955 8866 1.333177 CAACGGGAGGATAGGAGGAG 58.667 60.000 0.00 0.00 0.00 3.69
7956 8867 0.635009 ACAACGGGAGGATAGGAGGA 59.365 55.000 0.00 0.00 0.00 3.71
7957 8868 2.240279 CTACAACGGGAGGATAGGAGG 58.760 57.143 0.00 0.00 0.00 4.30
7958 8869 1.614413 GCTACAACGGGAGGATAGGAG 59.386 57.143 0.00 0.00 0.00 3.69
7959 8870 1.063492 TGCTACAACGGGAGGATAGGA 60.063 52.381 0.00 0.00 0.00 2.94
7960 8871 1.341531 CTGCTACAACGGGAGGATAGG 59.658 57.143 0.00 0.00 0.00 2.57
7961 8872 2.307768 TCTGCTACAACGGGAGGATAG 58.692 52.381 0.00 0.00 0.00 2.08
7962 8873 2.447408 TCTGCTACAACGGGAGGATA 57.553 50.000 0.00 0.00 0.00 2.59
7963 8874 1.482593 CTTCTGCTACAACGGGAGGAT 59.517 52.381 0.00 0.00 0.00 3.24
7964 8875 0.895530 CTTCTGCTACAACGGGAGGA 59.104 55.000 0.00 0.00 0.00 3.71
7965 8876 0.741221 GCTTCTGCTACAACGGGAGG 60.741 60.000 0.00 0.00 36.03 4.30
7966 8877 1.078759 CGCTTCTGCTACAACGGGAG 61.079 60.000 0.00 0.00 36.97 4.30
7967 8878 1.080093 CGCTTCTGCTACAACGGGA 60.080 57.895 0.00 0.00 36.97 5.14
7968 8879 2.740714 GCGCTTCTGCTACAACGGG 61.741 63.158 0.00 0.00 36.97 5.28
7969 8880 2.740714 GGCGCTTCTGCTACAACGG 61.741 63.158 7.64 0.00 36.97 4.44
7970 8881 1.291877 AAGGCGCTTCTGCTACAACG 61.292 55.000 7.64 0.00 36.97 4.10
7971 8882 0.875059 AAAGGCGCTTCTGCTACAAC 59.125 50.000 7.64 0.00 36.97 3.32
7972 8883 0.874390 CAAAGGCGCTTCTGCTACAA 59.126 50.000 7.64 0.00 36.97 2.41
7973 8884 0.034756 TCAAAGGCGCTTCTGCTACA 59.965 50.000 7.64 0.00 36.97 2.74
7974 8885 0.444260 GTCAAAGGCGCTTCTGCTAC 59.556 55.000 7.64 0.00 36.97 3.58
7975 8886 0.034756 TGTCAAAGGCGCTTCTGCTA 59.965 50.000 7.64 0.00 36.97 3.49
7976 8887 0.819259 TTGTCAAAGGCGCTTCTGCT 60.819 50.000 7.64 0.00 36.97 4.24
7977 8888 0.242017 ATTGTCAAAGGCGCTTCTGC 59.758 50.000 7.64 0.00 0.00 4.26
7978 8889 2.712057 AATTGTCAAAGGCGCTTCTG 57.288 45.000 7.64 0.00 0.00 3.02
7979 8890 4.380867 CCATAAATTGTCAAAGGCGCTTCT 60.381 41.667 7.64 0.00 0.00 2.85
7980 8891 3.859386 CCATAAATTGTCAAAGGCGCTTC 59.141 43.478 7.64 0.00 0.00 3.86
7981 8892 3.509575 TCCATAAATTGTCAAAGGCGCTT 59.490 39.130 7.64 0.00 0.00 4.68
7982 8893 3.088532 TCCATAAATTGTCAAAGGCGCT 58.911 40.909 7.64 0.00 0.00 5.92
7983 8894 3.438360 CTCCATAAATTGTCAAAGGCGC 58.562 45.455 0.00 0.00 0.00 6.53
7984 8895 3.129287 AGCTCCATAAATTGTCAAAGGCG 59.871 43.478 0.00 0.00 0.00 5.52
7985 8896 4.158394 TGAGCTCCATAAATTGTCAAAGGC 59.842 41.667 12.15 0.00 0.00 4.35
7986 8897 5.902613 TGAGCTCCATAAATTGTCAAAGG 57.097 39.130 12.15 0.00 0.00 3.11
7987 8898 6.976925 GGAATGAGCTCCATAAATTGTCAAAG 59.023 38.462 12.15 0.00 35.36 2.77
7988 8899 6.436847 TGGAATGAGCTCCATAAATTGTCAAA 59.563 34.615 12.15 0.00 40.71 2.69
7989 8900 5.951148 TGGAATGAGCTCCATAAATTGTCAA 59.049 36.000 12.15 0.00 40.71 3.18
7990 8901 5.508567 TGGAATGAGCTCCATAAATTGTCA 58.491 37.500 12.15 2.41 40.71 3.58
7991 8902 5.824624 TCTGGAATGAGCTCCATAAATTGTC 59.175 40.000 12.15 0.00 44.59 3.18
7992 8903 5.759059 TCTGGAATGAGCTCCATAAATTGT 58.241 37.500 12.15 0.00 44.59 2.71
7993 8904 6.060136 TCTCTGGAATGAGCTCCATAAATTG 58.940 40.000 12.15 0.00 44.59 2.32
7994 8905 6.257994 TCTCTGGAATGAGCTCCATAAATT 57.742 37.500 12.15 3.38 44.59 1.82
7995 8906 5.901413 TCTCTGGAATGAGCTCCATAAAT 57.099 39.130 12.15 0.00 44.59 1.40
7996 8907 5.698741 TTCTCTGGAATGAGCTCCATAAA 57.301 39.130 12.15 0.00 44.59 1.40
7997 8908 5.901413 ATTCTCTGGAATGAGCTCCATAA 57.099 39.130 12.15 0.00 44.59 1.90
7998 8909 7.565190 ATTATTCTCTGGAATGAGCTCCATA 57.435 36.000 12.15 0.00 44.59 2.74
7999 8910 5.901413 TTATTCTCTGGAATGAGCTCCAT 57.099 39.130 12.15 0.00 44.59 3.41
8000 8911 5.901413 ATTATTCTCTGGAATGAGCTCCA 57.099 39.130 12.15 1.14 43.45 3.86
8001 8912 6.294473 TCAATTATTCTCTGGAATGAGCTCC 58.706 40.000 12.15 0.00 41.66 4.70
8002 8913 7.798596 TTCAATTATTCTCTGGAATGAGCTC 57.201 36.000 6.82 6.82 41.66 4.09
8003 8914 8.630917 CATTTCAATTATTCTCTGGAATGAGCT 58.369 33.333 0.00 0.00 41.66 4.09
8004 8915 8.411683 ACATTTCAATTATTCTCTGGAATGAGC 58.588 33.333 8.85 0.00 41.66 4.26
8005 8916 9.947669 GACATTTCAATTATTCTCTGGAATGAG 57.052 33.333 8.85 0.00 41.66 2.90
8006 8917 8.906867 GGACATTTCAATTATTCTCTGGAATGA 58.093 33.333 8.85 0.00 41.66 2.57
8007 8918 8.689061 TGGACATTTCAATTATTCTCTGGAATG 58.311 33.333 1.60 1.60 41.66 2.67
8008 8919 8.827832 TGGACATTTCAATTATTCTCTGGAAT 57.172 30.769 0.00 0.00 43.67 3.01
8009 8920 8.827832 ATGGACATTTCAATTATTCTCTGGAA 57.172 30.769 0.00 0.00 35.78 3.53
8010 8921 7.503566 GGATGGACATTTCAATTATTCTCTGGA 59.496 37.037 0.00 0.00 0.00 3.86
8011 8922 7.504911 AGGATGGACATTTCAATTATTCTCTGG 59.495 37.037 0.00 0.00 0.00 3.86
8012 8923 8.461249 AGGATGGACATTTCAATTATTCTCTG 57.539 34.615 0.00 0.00 0.00 3.35
8013 8924 9.129532 GAAGGATGGACATTTCAATTATTCTCT 57.870 33.333 0.00 0.00 0.00 3.10
8014 8925 9.129532 AGAAGGATGGACATTTCAATTATTCTC 57.870 33.333 1.06 0.00 0.00 2.87
8015 8926 9.129532 GAGAAGGATGGACATTTCAATTATTCT 57.870 33.333 0.00 0.00 29.23 2.40
8016 8927 9.129532 AGAGAAGGATGGACATTTCAATTATTC 57.870 33.333 1.06 0.00 0.00 1.75
8017 8928 9.484806 AAGAGAAGGATGGACATTTCAATTATT 57.515 29.630 1.06 0.00 0.00 1.40
8018 8929 9.484806 AAAGAGAAGGATGGACATTTCAATTAT 57.515 29.630 1.06 0.00 0.00 1.28
8019 8930 8.884124 AAAGAGAAGGATGGACATTTCAATTA 57.116 30.769 1.06 0.00 0.00 1.40
8020 8931 7.787623 AAAGAGAAGGATGGACATTTCAATT 57.212 32.000 1.06 0.00 0.00 2.32
8022 8933 9.396022 GTATAAAGAGAAGGATGGACATTTCAA 57.604 33.333 1.06 0.00 0.00 2.69
8023 8934 8.772250 AGTATAAAGAGAAGGATGGACATTTCA 58.228 33.333 1.06 0.00 0.00 2.69
8024 8935 9.620259 AAGTATAAAGAGAAGGATGGACATTTC 57.380 33.333 0.00 0.00 0.00 2.17
8025 8936 9.981460 AAAGTATAAAGAGAAGGATGGACATTT 57.019 29.630 0.00 0.00 0.00 2.32
8026 8937 9.401058 CAAAGTATAAAGAGAAGGATGGACATT 57.599 33.333 0.00 0.00 0.00 2.71
8027 8938 7.500559 GCAAAGTATAAAGAGAAGGATGGACAT 59.499 37.037 0.00 0.00 0.00 3.06
8028 8939 6.823689 GCAAAGTATAAAGAGAAGGATGGACA 59.176 38.462 0.00 0.00 0.00 4.02
8029 8940 7.011857 CAGCAAAGTATAAAGAGAAGGATGGAC 59.988 40.741 0.00 0.00 0.00 4.02
8030 8941 7.050377 CAGCAAAGTATAAAGAGAAGGATGGA 58.950 38.462 0.00 0.00 0.00 3.41
8031 8942 6.825721 ACAGCAAAGTATAAAGAGAAGGATGG 59.174 38.462 0.00 0.00 0.00 3.51
8032 8943 7.550551 TCACAGCAAAGTATAAAGAGAAGGATG 59.449 37.037 0.00 0.00 0.00 3.51
8033 8944 7.624549 TCACAGCAAAGTATAAAGAGAAGGAT 58.375 34.615 0.00 0.00 0.00 3.24
8034 8945 7.004555 TCACAGCAAAGTATAAAGAGAAGGA 57.995 36.000 0.00 0.00 0.00 3.36
8035 8946 7.768120 AGATCACAGCAAAGTATAAAGAGAAGG 59.232 37.037 0.00 0.00 0.00 3.46
8036 8947 8.715191 AGATCACAGCAAAGTATAAAGAGAAG 57.285 34.615 0.00 0.00 0.00 2.85
8037 8948 8.535335 AGAGATCACAGCAAAGTATAAAGAGAA 58.465 33.333 0.00 0.00 0.00 2.87
8038 8949 8.072321 AGAGATCACAGCAAAGTATAAAGAGA 57.928 34.615 0.00 0.00 0.00 3.10
8039 8950 8.715191 AAGAGATCACAGCAAAGTATAAAGAG 57.285 34.615 0.00 0.00 0.00 2.85
8040 8951 8.535335 AGAAGAGATCACAGCAAAGTATAAAGA 58.465 33.333 0.00 0.00 0.00 2.52
8041 8952 8.715191 AGAAGAGATCACAGCAAAGTATAAAG 57.285 34.615 0.00 0.00 0.00 1.85
8042 8953 9.155975 GAAGAAGAGATCACAGCAAAGTATAAA 57.844 33.333 0.00 0.00 0.00 1.40
8043 8954 8.535335 AGAAGAAGAGATCACAGCAAAGTATAA 58.465 33.333 0.00 0.00 0.00 0.98
8044 8955 8.072321 AGAAGAAGAGATCACAGCAAAGTATA 57.928 34.615 0.00 0.00 0.00 1.47
8045 8956 6.945218 AGAAGAAGAGATCACAGCAAAGTAT 58.055 36.000 0.00 0.00 0.00 2.12
8046 8957 6.352016 AGAAGAAGAGATCACAGCAAAGTA 57.648 37.500 0.00 0.00 0.00 2.24
8047 8958 5.226194 AGAAGAAGAGATCACAGCAAAGT 57.774 39.130 0.00 0.00 0.00 2.66
8048 8959 6.557291 AAAGAAGAAGAGATCACAGCAAAG 57.443 37.500 0.00 0.00 0.00 2.77
8049 8960 6.769822 AGAAAAGAAGAAGAGATCACAGCAAA 59.230 34.615 0.00 0.00 0.00 3.68
8050 8961 6.294473 AGAAAAGAAGAAGAGATCACAGCAA 58.706 36.000 0.00 0.00 0.00 3.91
8051 8962 5.862845 AGAAAAGAAGAAGAGATCACAGCA 58.137 37.500 0.00 0.00 0.00 4.41
8052 8963 5.062058 CGAGAAAAGAAGAAGAGATCACAGC 59.938 44.000 0.00 0.00 0.00 4.40
8053 8964 6.155827 ACGAGAAAAGAAGAAGAGATCACAG 58.844 40.000 0.00 0.00 0.00 3.66
8054 8965 6.090483 ACGAGAAAAGAAGAAGAGATCACA 57.910 37.500 0.00 0.00 0.00 3.58
8055 8966 5.575218 GGACGAGAAAAGAAGAAGAGATCAC 59.425 44.000 0.00 0.00 0.00 3.06
8056 8967 5.478679 AGGACGAGAAAAGAAGAAGAGATCA 59.521 40.000 0.00 0.00 0.00 2.92
8057 8968 5.961272 AGGACGAGAAAAGAAGAAGAGATC 58.039 41.667 0.00 0.00 0.00 2.75
8058 8969 5.993748 AGGACGAGAAAAGAAGAAGAGAT 57.006 39.130 0.00 0.00 0.00 2.75
8059 8970 5.533482 CAAGGACGAGAAAAGAAGAAGAGA 58.467 41.667 0.00 0.00 0.00 3.10
8060 8971 4.151512 GCAAGGACGAGAAAAGAAGAAGAG 59.848 45.833 0.00 0.00 0.00 2.85
8061 8972 4.058817 GCAAGGACGAGAAAAGAAGAAGA 58.941 43.478 0.00 0.00 0.00 2.87
8062 8973 4.061596 AGCAAGGACGAGAAAAGAAGAAG 58.938 43.478 0.00 0.00 0.00 2.85
8063 8974 4.073293 AGCAAGGACGAGAAAAGAAGAA 57.927 40.909 0.00 0.00 0.00 2.52
8064 8975 3.753294 AGCAAGGACGAGAAAAGAAGA 57.247 42.857 0.00 0.00 0.00 2.87
8065 8976 3.369451 GCTAGCAAGGACGAGAAAAGAAG 59.631 47.826 10.63 0.00 0.00 2.85
8066 8977 3.006967 AGCTAGCAAGGACGAGAAAAGAA 59.993 43.478 18.83 0.00 0.00 2.52
8067 8978 2.563179 AGCTAGCAAGGACGAGAAAAGA 59.437 45.455 18.83 0.00 0.00 2.52
8068 8979 2.670414 CAGCTAGCAAGGACGAGAAAAG 59.330 50.000 18.83 0.00 0.00 2.27
8069 8980 2.688507 CAGCTAGCAAGGACGAGAAAA 58.311 47.619 18.83 0.00 0.00 2.29
8070 8981 1.673033 GCAGCTAGCAAGGACGAGAAA 60.673 52.381 18.83 0.00 44.79 2.52
8071 8982 0.108615 GCAGCTAGCAAGGACGAGAA 60.109 55.000 18.83 0.00 44.79 2.87
8072 8983 1.513158 GCAGCTAGCAAGGACGAGA 59.487 57.895 18.83 0.00 44.79 4.04
8073 8984 1.875813 CGCAGCTAGCAAGGACGAG 60.876 63.158 18.83 0.00 46.13 4.18
8074 8985 1.667154 ATCGCAGCTAGCAAGGACGA 61.667 55.000 18.83 17.18 46.13 4.20
8075 8986 1.211818 GATCGCAGCTAGCAAGGACG 61.212 60.000 18.83 12.45 46.13 4.79
8076 8987 0.103937 AGATCGCAGCTAGCAAGGAC 59.896 55.000 18.83 3.72 46.13 3.85
8077 8988 0.387202 GAGATCGCAGCTAGCAAGGA 59.613 55.000 18.83 10.68 46.13 3.36
8078 8989 0.103755 TGAGATCGCAGCTAGCAAGG 59.896 55.000 18.83 7.10 46.13 3.61
8079 8990 1.202394 AGTGAGATCGCAGCTAGCAAG 60.202 52.381 18.83 10.24 46.13 4.01
8113 9024 7.654022 TTTATTTCTGACTTTTGGACCTGTT 57.346 32.000 0.00 0.00 0.00 3.16
8233 9145 8.044309 ACTATGGTGCATTATGTACACTGTTTA 58.956 33.333 14.77 0.00 34.53 2.01
8245 9157 7.201938 CCCAATCAGAAAACTATGGTGCATTAT 60.202 37.037 0.00 0.00 0.00 1.28
8294 9206 2.574006 TTTCTCTCACCTGCATGCTT 57.426 45.000 20.33 0.00 0.00 3.91
8325 9259 4.651045 TGTTCTCCAAGCTGCATCTCTATA 59.349 41.667 1.02 0.00 0.00 1.31
8389 9323 1.310933 ACGCCGACAGACCGTATTCT 61.311 55.000 0.00 0.00 32.86 2.40
8429 9363 4.255510 ACAGGGTAGCCAAATCAATCAT 57.744 40.909 14.62 0.00 0.00 2.45
8457 9391 0.321671 GGACTAGTGCTGTTGAGCCA 59.678 55.000 7.20 0.00 45.57 4.75
8470 9405 5.056480 TGACATCACAAACAACAGGACTAG 58.944 41.667 0.00 0.00 0.00 2.57
8475 9410 3.243468 TGCATGACATCACAAACAACAGG 60.243 43.478 0.00 0.00 0.00 4.00
8571 9506 8.945195 TCTTGGAATAATATGGCATTCTTGAT 57.055 30.769 4.78 0.00 32.77 2.57
8604 9539 1.948145 CATCCATTCTCAAGCAGCTCC 59.052 52.381 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.