Multiple sequence alignment - TraesCS7D01G020300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G020300 chr7D 100.000 2963 0 0 1 2963 8818102 8821064 0.000000e+00 5472.0
1 TraesCS7D01G020300 chr7D 76.950 1705 270 53 538 2205 10465827 10464209 0.000000e+00 857.0
2 TraesCS7D01G020300 chr7D 79.154 1300 198 41 857 2117 9223956 9225221 0.000000e+00 832.0
3 TraesCS7D01G020300 chr7D 81.538 650 95 13 852 1481 9354920 9355564 2.040000e-141 512.0
4 TraesCS7D01G020300 chr4A 88.710 2418 172 40 313 2679 729156864 729159231 0.000000e+00 2859.0
5 TraesCS7D01G020300 chr4A 95.636 1627 60 3 847 2470 728443472 728441854 0.000000e+00 2601.0
6 TraesCS7D01G020300 chr4A 88.543 2182 160 32 313 2468 729818826 729820943 0.000000e+00 2562.0
7 TraesCS7D01G020300 chr4A 91.390 1475 66 17 1 1470 729677043 729678461 0.000000e+00 1964.0
8 TraesCS7D01G020300 chr4A 94.793 1037 53 1 1468 2504 729678543 729679578 0.000000e+00 1615.0
9 TraesCS7D01G020300 chr4A 78.046 1781 321 40 745 2507 729236738 729238466 0.000000e+00 1059.0
10 TraesCS7D01G020300 chr4A 77.684 1779 290 64 778 2507 729880880 729882600 0.000000e+00 987.0
11 TraesCS7D01G020300 chr4A 78.783 1315 229 32 772 2061 729426121 729424832 0.000000e+00 837.0
12 TraesCS7D01G020300 chr4A 77.565 1306 214 45 787 2049 743634605 743635874 0.000000e+00 715.0
13 TraesCS7D01G020300 chr4A 81.675 824 138 12 1672 2489 728553360 728552544 0.000000e+00 673.0
14 TraesCS7D01G020300 chr4A 78.578 1111 171 35 553 1623 729925362 729926445 0.000000e+00 671.0
15 TraesCS7D01G020300 chr4A 76.442 1231 218 43 927 2116 743372320 743373519 4.230000e-168 601.0
16 TraesCS7D01G020300 chr4A 78.841 690 115 18 759 1425 727123027 727123708 1.260000e-118 436.0
17 TraesCS7D01G020300 chr4A 86.429 420 31 9 2569 2963 728441830 728441412 1.260000e-118 436.0
18 TraesCS7D01G020300 chr4A 81.400 500 57 16 538 1016 728662496 728662012 2.790000e-100 375.0
19 TraesCS7D01G020300 chr4A 90.566 265 23 2 2700 2963 730002108 730001845 1.690000e-92 350.0
20 TraesCS7D01G020300 chr4A 84.971 346 32 9 547 882 730061513 730061178 1.700000e-87 333.0
21 TraesCS7D01G020300 chr4A 85.854 205 12 2 2444 2632 730002310 730002107 5.010000e-48 202.0
22 TraesCS7D01G020300 chr4A 80.925 173 17 4 348 510 728698565 728698399 4.010000e-24 122.0
23 TraesCS7D01G020300 chr4A 94.000 50 3 0 550 599 730004754 730004705 3.170000e-10 76.8
24 TraesCS7D01G020300 chr7A 92.694 1533 63 7 538 2060 9381809 9383302 0.000000e+00 2165.0
25 TraesCS7D01G020300 chr7A 80.047 852 132 21 1275 2117 9688097 9687275 5.470000e-167 597.0
26 TraesCS7D01G020300 chr7A 79.727 878 136 32 1650 2509 10168140 10167287 5.470000e-167 597.0
27 TraesCS7D01G020300 chr7A 95.294 340 9 2 2149 2481 9383310 9383649 1.560000e-147 532.0
28 TraesCS7D01G020300 chr7A 87.115 357 34 4 2618 2963 9383712 9384067 7.700000e-106 394.0
29 TraesCS7D01G020300 chr7A 79.718 567 97 7 1494 2059 10106070 10105521 7.700000e-106 394.0
30 TraesCS7D01G020300 chr4B 81.346 1962 273 54 612 2532 654201789 654203698 0.000000e+00 1509.0
31 TraesCS7D01G020300 chr4B 88.806 402 37 3 2566 2959 654203775 654204176 1.230000e-133 486.0
32 TraesCS7D01G020300 chr4D 80.599 2036 287 67 546 2532 507352461 507350485 0.000000e+00 1472.0
33 TraesCS7D01G020300 chr4D 87.622 307 20 7 2569 2859 507350405 507350101 1.020000e-89 340.0
34 TraesCS7D01G020300 chr4D 98.361 61 1 0 2903 2963 507350100 507350040 1.120000e-19 108.0
35 TraesCS7D01G020300 chr5A 80.691 1621 241 45 544 2123 691820781 691822370 0.000000e+00 1194.0
36 TraesCS7D01G020300 chr5A 89.163 406 35 4 2566 2963 691822827 691823231 5.700000e-137 497.0
37 TraesCS7D01G020300 chr5A 90.244 369 35 1 2164 2532 691822372 691822739 5.740000e-132 481.0
38 TraesCS7D01G020300 chr3D 93.968 315 13 6 1 311 184638698 184639010 3.460000e-129 472.0
39 TraesCS7D01G020300 chr5D 93.651 315 14 6 1 311 493901918 493901606 1.610000e-127 466.0
40 TraesCS7D01G020300 chr6A 90.476 315 24 4 1 311 551833836 551834148 7.640000e-111 411.0
41 TraesCS7D01G020300 chr3A 85.806 310 20 10 1 310 687646456 687646741 1.030000e-79 307.0
42 TraesCS7D01G020300 chr1A 94.545 55 2 1 268 321 535328545 535328491 1.890000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G020300 chr7D 8818102 8821064 2962 False 5472.000000 5472 100.000000 1 2963 1 chr7D.!!$F1 2962
1 TraesCS7D01G020300 chr7D 10464209 10465827 1618 True 857.000000 857 76.950000 538 2205 1 chr7D.!!$R1 1667
2 TraesCS7D01G020300 chr7D 9223956 9225221 1265 False 832.000000 832 79.154000 857 2117 1 chr7D.!!$F2 1260
3 TraesCS7D01G020300 chr7D 9354920 9355564 644 False 512.000000 512 81.538000 852 1481 1 chr7D.!!$F3 629
4 TraesCS7D01G020300 chr4A 729156864 729159231 2367 False 2859.000000 2859 88.710000 313 2679 1 chr4A.!!$F2 2366
5 TraesCS7D01G020300 chr4A 729818826 729820943 2117 False 2562.000000 2562 88.543000 313 2468 1 chr4A.!!$F4 2155
6 TraesCS7D01G020300 chr4A 729677043 729679578 2535 False 1789.500000 1964 93.091500 1 2504 2 chr4A.!!$F9 2503
7 TraesCS7D01G020300 chr4A 728441412 728443472 2060 True 1518.500000 2601 91.032500 847 2963 2 chr4A.!!$R6 2116
8 TraesCS7D01G020300 chr4A 729236738 729238466 1728 False 1059.000000 1059 78.046000 745 2507 1 chr4A.!!$F3 1762
9 TraesCS7D01G020300 chr4A 729880880 729882600 1720 False 987.000000 987 77.684000 778 2507 1 chr4A.!!$F5 1729
10 TraesCS7D01G020300 chr4A 729424832 729426121 1289 True 837.000000 837 78.783000 772 2061 1 chr4A.!!$R4 1289
11 TraesCS7D01G020300 chr4A 743634605 743635874 1269 False 715.000000 715 77.565000 787 2049 1 chr4A.!!$F8 1262
12 TraesCS7D01G020300 chr4A 728552544 728553360 816 True 673.000000 673 81.675000 1672 2489 1 chr4A.!!$R1 817
13 TraesCS7D01G020300 chr4A 729925362 729926445 1083 False 671.000000 671 78.578000 553 1623 1 chr4A.!!$F6 1070
14 TraesCS7D01G020300 chr4A 743372320 743373519 1199 False 601.000000 601 76.442000 927 2116 1 chr4A.!!$F7 1189
15 TraesCS7D01G020300 chr4A 727123027 727123708 681 False 436.000000 436 78.841000 759 1425 1 chr4A.!!$F1 666
16 TraesCS7D01G020300 chr4A 730001845 730004754 2909 True 209.600000 350 90.140000 550 2963 3 chr4A.!!$R7 2413
17 TraesCS7D01G020300 chr7A 9381809 9384067 2258 False 1030.333333 2165 91.701000 538 2963 3 chr7A.!!$F1 2425
18 TraesCS7D01G020300 chr7A 9687275 9688097 822 True 597.000000 597 80.047000 1275 2117 1 chr7A.!!$R1 842
19 TraesCS7D01G020300 chr7A 10167287 10168140 853 True 597.000000 597 79.727000 1650 2509 1 chr7A.!!$R3 859
20 TraesCS7D01G020300 chr7A 10105521 10106070 549 True 394.000000 394 79.718000 1494 2059 1 chr7A.!!$R2 565
21 TraesCS7D01G020300 chr4B 654201789 654204176 2387 False 997.500000 1509 85.076000 612 2959 2 chr4B.!!$F1 2347
22 TraesCS7D01G020300 chr4D 507350040 507352461 2421 True 640.000000 1472 88.860667 546 2963 3 chr4D.!!$R1 2417
23 TraesCS7D01G020300 chr5A 691820781 691823231 2450 False 724.000000 1194 86.699333 544 2963 3 chr5A.!!$F1 2419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.248843 GTGAAGCTCTACTGCAGCCT 59.751 55.0 15.27 0.0 33.15 4.58 F
915 1140 0.744771 GATCCCTCCACCGCTTCAAC 60.745 60.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 1903 0.685097 ACCACCATCAGCACGTACTT 59.315 50.000 0.0 0.0 0.00 2.24 R
2633 3673 1.139455 AGCAACACAGCCAAAGCAATT 59.861 42.857 0.0 0.0 43.56 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.268920 GGAATCTGCGGTGGAGCA 59.731 61.111 0.00 0.00 45.96 4.26
36 37 2.109126 GGAATCTGCGGTGGAGCAC 61.109 63.158 0.00 0.00 42.92 4.40
77 78 0.459237 CCGGTGAAGCTCTACTGCAG 60.459 60.000 13.48 13.48 33.15 4.41
80 81 0.248843 GTGAAGCTCTACTGCAGCCT 59.751 55.000 15.27 0.00 33.15 4.58
143 144 2.821366 CCTCCGCTGTGGTGATGC 60.821 66.667 10.69 0.00 39.52 3.91
265 266 2.210116 CACGTGTAGCACAGGAAAAGT 58.790 47.619 7.58 0.00 37.42 2.66
345 346 9.871238 AATCTACGAATGAATTGTAGTTGTACT 57.129 29.630 0.00 0.00 37.45 2.73
374 375 6.481976 TCGTTTGTAGTTATATGAGGCATTGG 59.518 38.462 0.00 0.00 0.00 3.16
510 518 0.884704 TGTTTCAGTCCGGCTTGAGC 60.885 55.000 0.00 0.00 41.14 4.26
511 519 1.667830 TTTCAGTCCGGCTTGAGCG 60.668 57.895 0.00 0.00 43.26 5.03
512 520 2.377628 TTTCAGTCCGGCTTGAGCGT 62.378 55.000 0.00 0.00 43.26 5.07
513 521 2.765250 TTCAGTCCGGCTTGAGCGTC 62.765 60.000 0.00 0.00 43.26 5.19
514 522 4.070552 AGTCCGGCTTGAGCGTCC 62.071 66.667 0.00 0.00 43.26 4.79
515 523 4.070552 GTCCGGCTTGAGCGTCCT 62.071 66.667 0.00 0.00 43.26 3.85
516 524 3.311110 TCCGGCTTGAGCGTCCTT 61.311 61.111 0.00 0.00 43.26 3.36
517 525 2.358737 CCGGCTTGAGCGTCCTTT 60.359 61.111 0.00 0.00 43.26 3.11
519 527 2.391389 CGGCTTGAGCGTCCTTTCC 61.391 63.158 0.00 0.00 43.26 3.13
520 528 1.302511 GGCTTGAGCGTCCTTTCCA 60.303 57.895 0.00 0.00 43.26 3.53
522 530 0.884704 GCTTGAGCGTCCTTTCCACA 60.885 55.000 0.00 0.00 0.00 4.17
743 918 2.437359 CAGGCCCTTCTGCTTCCG 60.437 66.667 0.00 0.00 0.00 4.30
744 919 4.416738 AGGCCCTTCTGCTTCCGC 62.417 66.667 0.00 0.00 0.00 5.54
745 920 4.416738 GGCCCTTCTGCTTCCGCT 62.417 66.667 0.00 0.00 36.97 5.52
746 921 2.360475 GCCCTTCTGCTTCCGCTT 60.360 61.111 0.00 0.00 36.97 4.68
747 922 2.402572 GCCCTTCTGCTTCCGCTTC 61.403 63.158 0.00 0.00 36.97 3.86
748 923 1.746991 CCCTTCTGCTTCCGCTTCC 60.747 63.158 0.00 0.00 36.97 3.46
749 924 2.103042 CCTTCTGCTTCCGCTTCCG 61.103 63.158 0.00 0.00 36.97 4.30
809 1019 1.276622 GAGAGGGACACCAAGCCTTA 58.723 55.000 0.00 0.00 40.13 2.69
810 1020 1.628846 GAGAGGGACACCAAGCCTTAA 59.371 52.381 0.00 0.00 40.13 1.85
915 1140 0.744771 GATCCCTCCACCGCTTCAAC 60.745 60.000 0.00 0.00 0.00 3.18
1097 1340 4.584638 TCCCTTACCTGCACAATAACAT 57.415 40.909 0.00 0.00 0.00 2.71
1459 1774 2.063266 GTAAATGTGTCTTCGTCGGCA 58.937 47.619 0.00 0.00 0.00 5.69
1501 1903 1.133513 ACCTGATGGGCTTCAACAACA 60.134 47.619 0.00 0.00 39.10 3.33
1551 1953 2.576648 GGGGGAAGTGTGGAAGACTATT 59.423 50.000 0.00 0.00 40.98 1.73
1708 2112 4.631813 AGGATCGTGACAGTAAAGAATTGC 59.368 41.667 0.00 0.00 0.00 3.56
2004 2670 3.982829 GTTCCTCCCAAGAACCGC 58.017 61.111 0.00 0.00 38.12 5.68
2136 2807 1.098050 GCCTGGCAAACTACAGATGG 58.902 55.000 15.17 0.00 36.86 3.51
2144 2815 4.035675 GGCAAACTACAGATGGAGCATAAC 59.964 45.833 0.00 0.00 0.00 1.89
2146 2817 3.099267 ACTACAGATGGAGCATAACGC 57.901 47.619 0.00 0.00 42.91 4.84
2298 3010 9.747898 TGTTATGGTTATCCTAAATCTTGTTGT 57.252 29.630 0.00 0.00 34.23 3.32
2319 3031 2.704572 AGATTGTGAACCTGCTAGTGC 58.295 47.619 0.00 0.00 40.20 4.40
2520 3505 7.209471 TGAAATAAAATTGGAGTGCGTACTT 57.791 32.000 7.83 0.00 37.25 2.24
2542 3554 5.600908 TTTGTACAAATACGCCAGAGTTC 57.399 39.130 17.01 0.00 33.60 3.01
2633 3673 8.792633 CAAAAATAAGATCTCTTGGTGTGGTTA 58.207 33.333 0.00 0.00 37.40 2.85
2667 3711 2.949644 GTGTTGCTACCCTGTTTGAGTT 59.050 45.455 0.00 0.00 0.00 3.01
2687 3732 2.733956 TGGCTCAACCAGTTTTGTTCT 58.266 42.857 0.00 0.00 46.36 3.01
2694 3743 5.945155 TCAACCAGTTTTGTTCTTGTGTAC 58.055 37.500 0.00 0.00 0.00 2.90
2703 3752 4.850859 TGTTCTTGTGTACGTTTGTGAG 57.149 40.909 0.00 0.00 0.00 3.51
2730 3786 8.172352 TCCCGATTCTTGAATGTTCTTTTTAA 57.828 30.769 0.09 0.00 0.00 1.52
2733 3789 9.677567 CCGATTCTTGAATGTTCTTTTTAAGAA 57.322 29.630 0.09 0.00 44.82 2.52
2797 3854 7.658982 TGCTCCAGAACTGATGATGTATTTATC 59.341 37.037 3.19 0.00 0.00 1.75
2829 3893 2.724977 TGGAATGAGTCAGACGTGTC 57.275 50.000 0.00 0.00 0.00 3.67
2835 3899 5.392767 AATGAGTCAGACGTGTCTAACAT 57.607 39.130 6.10 5.64 37.98 2.71
2872 3936 1.603236 GCCGGCCATCCATTTGTCAA 61.603 55.000 18.11 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.552365 CATCGCAGGCATCCCCGT 62.552 66.667 0.00 0.00 39.21 5.28
48 49 2.125552 TTCACCGGAGCTGCATCG 60.126 61.111 9.46 5.00 0.00 3.84
143 144 4.543590 TCCCTTCTCTTGTTCTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
242 243 0.249699 TTCCTGTGCTACACGTGGTG 60.250 55.000 21.57 12.85 37.14 4.17
243 244 0.466543 TTTCCTGTGCTACACGTGGT 59.533 50.000 21.57 8.16 37.14 4.16
265 266 2.519771 TAACTCTCTCCCGTAAGCCA 57.480 50.000 0.00 0.00 0.00 4.75
344 345 6.583050 GCCTCATATAACTACAAACGAGCTAG 59.417 42.308 0.00 0.00 0.00 3.42
345 346 6.040054 TGCCTCATATAACTACAAACGAGCTA 59.960 38.462 0.00 0.00 0.00 3.32
346 347 5.163447 TGCCTCATATAACTACAAACGAGCT 60.163 40.000 0.00 0.00 0.00 4.09
450 458 0.462375 GGTGTCCGTTTGGGCTTTTT 59.538 50.000 0.00 0.00 41.88 1.94
506 514 0.389817 CGATGTGGAAAGGACGCTCA 60.390 55.000 0.00 0.00 0.00 4.26
510 518 0.246635 AGGACGATGTGGAAAGGACG 59.753 55.000 0.00 0.00 0.00 4.79
511 519 1.405661 GGAGGACGATGTGGAAAGGAC 60.406 57.143 0.00 0.00 0.00 3.85
512 520 0.902531 GGAGGACGATGTGGAAAGGA 59.097 55.000 0.00 0.00 0.00 3.36
513 521 0.905357 AGGAGGACGATGTGGAAAGG 59.095 55.000 0.00 0.00 0.00 3.11
514 522 1.276421 ACAGGAGGACGATGTGGAAAG 59.724 52.381 0.00 0.00 0.00 2.62
515 523 1.001974 CACAGGAGGACGATGTGGAAA 59.998 52.381 0.00 0.00 40.47 3.13
516 524 0.608130 CACAGGAGGACGATGTGGAA 59.392 55.000 0.00 0.00 40.47 3.53
517 525 0.251608 TCACAGGAGGACGATGTGGA 60.252 55.000 4.86 0.00 43.54 4.02
519 527 1.202463 GGATCACAGGAGGACGATGTG 60.202 57.143 0.00 0.00 44.48 3.21
520 528 1.115467 GGATCACAGGAGGACGATGT 58.885 55.000 0.00 0.00 0.00 3.06
522 530 1.342474 ACAGGATCACAGGAGGACGAT 60.342 52.381 0.00 0.00 0.00 3.73
1097 1340 4.460683 GGGTGATGCCGCCGTACA 62.461 66.667 0.00 0.00 43.85 2.90
1459 1774 6.835488 AGGTTGCCAATCAAATACATCATACT 59.165 34.615 0.00 0.00 36.26 2.12
1501 1903 0.685097 ACCACCATCAGCACGTACTT 59.315 50.000 0.00 0.00 0.00 2.24
1652 2054 4.348020 AGTGTTATCCCAGAACCTAGGA 57.652 45.455 17.98 0.00 0.00 2.94
1653 2055 5.186198 CAAAGTGTTATCCCAGAACCTAGG 58.814 45.833 7.41 7.41 0.00 3.02
1708 2112 1.069636 GTTGGCAGAACGCTTCAGAAG 60.070 52.381 5.72 5.72 41.91 2.85
2004 2670 2.169832 TGTTCAGCCGAAAGAAGAGG 57.830 50.000 0.00 0.00 31.43 3.69
2136 2807 3.128589 TCTTTGGAAATGGCGTTATGCTC 59.871 43.478 0.00 0.00 45.43 4.26
2144 2815 3.652274 ACATTGTTCTTTGGAAATGGCG 58.348 40.909 0.00 0.00 32.81 5.69
2146 2817 7.661040 AGAGTAACATTGTTCTTTGGAAATGG 58.339 34.615 5.07 0.00 32.81 3.16
2298 3010 3.515502 AGCACTAGCAGGTTCACAATCTA 59.484 43.478 0.00 0.00 45.49 1.98
2319 3031 3.750130 CAGTCTGATTGACCCTTTCACAG 59.250 47.826 0.00 0.00 46.46 3.66
2375 3105 6.307077 GGCGGTGTTTTATGAAAATACTGAAC 59.693 38.462 18.82 10.22 45.93 3.18
2486 3466 9.299465 ACTCCAATTTTATTTCATTGGCATTTT 57.701 25.926 6.11 0.00 46.38 1.82
2520 3505 5.302360 AGAACTCTGGCGTATTTGTACAAA 58.698 37.500 22.58 22.58 34.46 2.83
2542 3554 3.909776 TGTCGTTACCACTGTCAGTAG 57.090 47.619 4.85 0.17 0.00 2.57
2593 3632 6.777782 TCTTATTTTTGGTGGCCATTCAATT 58.222 32.000 20.36 13.05 31.53 2.32
2595 3634 5.815233 TCTTATTTTTGGTGGCCATTCAA 57.185 34.783 9.72 14.62 31.53 2.69
2633 3673 1.139455 AGCAACACAGCCAAAGCAATT 59.861 42.857 0.00 0.00 43.56 2.32
2667 3711 2.733956 AGAACAAAACTGGTTGAGCCA 58.266 42.857 0.00 0.00 46.95 4.75
2686 3731 3.001939 GGGAACTCACAAACGTACACAAG 59.998 47.826 0.00 0.00 0.00 3.16
2687 3732 2.937799 GGGAACTCACAAACGTACACAA 59.062 45.455 0.00 0.00 0.00 3.33
2694 3743 2.413837 AGAATCGGGAACTCACAAACG 58.586 47.619 0.00 0.00 0.00 3.60
2703 3752 5.629079 AAGAACATTCAAGAATCGGGAAC 57.371 39.130 0.00 0.00 0.00 3.62
2797 3854 6.632909 TGACTCATTCCATGCCAATTTTAAG 58.367 36.000 0.00 0.00 0.00 1.85
2835 3899 5.393678 GGCCGGCTCTTTATGAATGTAAAAA 60.394 40.000 28.56 0.00 0.00 1.94
2872 3936 2.492881 TCATTGCGGCAAATGTTCAGAT 59.507 40.909 20.48 0.00 38.46 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.