Multiple sequence alignment - TraesCS7D01G020200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G020200 chr7D 100.000 3628 0 0 1 3628 8744802 8748429 0.000000e+00 6700
1 TraesCS7D01G020200 chr7D 88.940 2161 177 24 803 2950 8892488 8890377 0.000000e+00 2610
2 TraesCS7D01G020200 chr7D 89.356 2095 169 25 877 2950 8620630 8622691 0.000000e+00 2584
3 TraesCS7D01G020200 chr7D 87.933 1790 167 18 1148 2907 9829244 9827474 0.000000e+00 2063
4 TraesCS7D01G020200 chr7D 90.041 964 69 15 2008 2950 10012063 10013020 0.000000e+00 1223
5 TraesCS7D01G020200 chr7D 97.956 685 11 3 2946 3628 550158717 550159400 0.000000e+00 1184
6 TraesCS7D01G020200 chr7D 97.794 680 12 3 2951 3628 406349376 406348698 0.000000e+00 1170
7 TraesCS7D01G020200 chr7D 97.654 682 13 3 2950 3628 106912166 106911485 0.000000e+00 1168
8 TraesCS7D01G020200 chr7D 90.604 298 25 2 2655 2950 9130153 9130449 3.400000e-105 392
9 TraesCS7D01G020200 chr7D 86.765 204 15 6 930 1127 10102151 10101954 2.190000e-52 217
10 TraesCS7D01G020200 chr4A 87.154 2203 240 22 778 2950 730407351 730409540 0.000000e+00 2460
11 TraesCS7D01G020200 chr4A 88.057 2110 206 24 875 2950 731196457 731198554 0.000000e+00 2459
12 TraesCS7D01G020200 chr4A 87.843 1785 169 20 868 2636 731155959 731154207 0.000000e+00 2050
13 TraesCS7D01G020200 chr4A 87.843 1785 169 20 868 2636 731171324 731169572 0.000000e+00 2050
14 TraesCS7D01G020200 chr4A 89.148 1585 157 5 1058 2636 729433549 729431974 0.000000e+00 1960
15 TraesCS7D01G020200 chr4A 91.524 1227 81 13 1741 2950 728781903 728783123 0.000000e+00 1668
16 TraesCS7D01G020200 chr4A 90.975 1241 100 7 1660 2894 729887530 729888764 0.000000e+00 1661
17 TraesCS7D01G020200 chr4A 90.078 766 64 7 991 1750 728780681 728781440 0.000000e+00 983
18 TraesCS7D01G020200 chr4A 92.694 657 36 4 1793 2442 729442116 729441465 0.000000e+00 937
19 TraesCS7D01G020200 chr4A 88.011 759 75 7 867 1615 729886777 729887529 0.000000e+00 883
20 TraesCS7D01G020200 chr4A 86.818 220 25 4 578 794 729886402 729886620 3.620000e-60 243
21 TraesCS7D01G020200 chr4A 85.333 225 29 4 579 800 730126129 730125906 2.820000e-56 230
22 TraesCS7D01G020200 chr7A 89.298 1411 119 16 1564 2950 9450329 9451731 0.000000e+00 1740
23 TraesCS7D01G020200 chr7A 83.627 965 107 20 586 1533 9449402 9450332 0.000000e+00 859
24 TraesCS7D01G020200 chr1D 97.941 680 12 2 2951 3628 79155623 79154944 0.000000e+00 1177
25 TraesCS7D01G020200 chrUn 97.941 680 11 3 2951 3628 305172345 305173023 0.000000e+00 1175
26 TraesCS7D01G020200 chrUn 89.516 496 49 1 1376 1868 280370238 280370733 3.080000e-175 625
27 TraesCS7D01G020200 chr3D 97.941 680 11 3 2951 3628 25990484 25991162 0.000000e+00 1175
28 TraesCS7D01G020200 chr3D 97.794 680 12 3 2951 3628 99753040 99753718 0.000000e+00 1170
29 TraesCS7D01G020200 chr2D 97.938 679 12 2 2951 3628 649579926 649579249 0.000000e+00 1175
30 TraesCS7D01G020200 chr2D 86.538 104 10 4 479 580 624052202 624052303 1.060000e-20 111
31 TraesCS7D01G020200 chr5D 97.797 681 12 3 2950 3628 513659080 513658401 0.000000e+00 1171
32 TraesCS7D01G020200 chr5D 85.577 104 11 4 479 580 469096635 469096736 4.950000e-19 106
33 TraesCS7D01G020200 chr7B 81.935 155 23 5 429 580 23331858 23332010 3.800000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G020200 chr7D 8744802 8748429 3627 False 6700.0 6700 100.000000 1 3628 1 chr7D.!!$F2 3627
1 TraesCS7D01G020200 chr7D 8890377 8892488 2111 True 2610.0 2610 88.940000 803 2950 1 chr7D.!!$R1 2147
2 TraesCS7D01G020200 chr7D 8620630 8622691 2061 False 2584.0 2584 89.356000 877 2950 1 chr7D.!!$F1 2073
3 TraesCS7D01G020200 chr7D 9827474 9829244 1770 True 2063.0 2063 87.933000 1148 2907 1 chr7D.!!$R2 1759
4 TraesCS7D01G020200 chr7D 10012063 10013020 957 False 1223.0 1223 90.041000 2008 2950 1 chr7D.!!$F4 942
5 TraesCS7D01G020200 chr7D 550158717 550159400 683 False 1184.0 1184 97.956000 2946 3628 1 chr7D.!!$F5 682
6 TraesCS7D01G020200 chr7D 406348698 406349376 678 True 1170.0 1170 97.794000 2951 3628 1 chr7D.!!$R5 677
7 TraesCS7D01G020200 chr7D 106911485 106912166 681 True 1168.0 1168 97.654000 2950 3628 1 chr7D.!!$R4 678
8 TraesCS7D01G020200 chr4A 730407351 730409540 2189 False 2460.0 2460 87.154000 778 2950 1 chr4A.!!$F1 2172
9 TraesCS7D01G020200 chr4A 731196457 731198554 2097 False 2459.0 2459 88.057000 875 2950 1 chr4A.!!$F2 2075
10 TraesCS7D01G020200 chr4A 731154207 731155959 1752 True 2050.0 2050 87.843000 868 2636 1 chr4A.!!$R4 1768
11 TraesCS7D01G020200 chr4A 731169572 731171324 1752 True 2050.0 2050 87.843000 868 2636 1 chr4A.!!$R5 1768
12 TraesCS7D01G020200 chr4A 729431974 729433549 1575 True 1960.0 1960 89.148000 1058 2636 1 chr4A.!!$R1 1578
13 TraesCS7D01G020200 chr4A 728780681 728783123 2442 False 1325.5 1668 90.801000 991 2950 2 chr4A.!!$F3 1959
14 TraesCS7D01G020200 chr4A 729441465 729442116 651 True 937.0 937 92.694000 1793 2442 1 chr4A.!!$R2 649
15 TraesCS7D01G020200 chr4A 729886402 729888764 2362 False 929.0 1661 88.601333 578 2894 3 chr4A.!!$F4 2316
16 TraesCS7D01G020200 chr7A 9449402 9451731 2329 False 1299.5 1740 86.462500 586 2950 2 chr7A.!!$F1 2364
17 TraesCS7D01G020200 chr1D 79154944 79155623 679 True 1177.0 1177 97.941000 2951 3628 1 chr1D.!!$R1 677
18 TraesCS7D01G020200 chrUn 305172345 305173023 678 False 1175.0 1175 97.941000 2951 3628 1 chrUn.!!$F2 677
19 TraesCS7D01G020200 chr3D 25990484 25991162 678 False 1175.0 1175 97.941000 2951 3628 1 chr3D.!!$F1 677
20 TraesCS7D01G020200 chr3D 99753040 99753718 678 False 1170.0 1170 97.794000 2951 3628 1 chr3D.!!$F2 677
21 TraesCS7D01G020200 chr2D 649579249 649579926 677 True 1175.0 1175 97.938000 2951 3628 1 chr2D.!!$R1 677
22 TraesCS7D01G020200 chr5D 513658401 513659080 679 True 1171.0 1171 97.797000 2950 3628 1 chr5D.!!$R1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.032130 TAGATCAAGATCGGCCGTGC 59.968 55.0 27.15 18.16 42.48 5.34 F
85 86 0.036294 GGTTCAGGCTCGCTAGGTTT 60.036 55.0 0.00 0.00 0.00 3.27 F
526 527 0.037975 GTGGCTGAATGTGCTTTGGG 60.038 55.0 0.00 0.00 0.00 4.12 F
528 529 0.037975 GGCTGAATGTGCTTTGGGTG 60.038 55.0 0.00 0.00 0.00 4.61 F
551 552 0.466555 TGCCCAAGCACCGTTAAGTT 60.467 50.0 0.00 0.00 46.52 2.66 F
552 553 0.671796 GCCCAAGCACCGTTAAGTTT 59.328 50.0 0.00 0.00 39.53 2.66 F
1941 2621 0.326264 ACTCATTCAGTCCACAGCCC 59.674 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1557 0.172578 CCTCGTAATGGTCGCTGACA 59.827 55.000 10.14 0.00 33.68 3.58 R
1369 1558 0.172803 ACCTCGTAATGGTCGCTGAC 59.827 55.000 0.79 0.79 31.03 3.51 R
1370 1559 0.454600 GACCTCGTAATGGTCGCTGA 59.545 55.000 0.00 0.00 43.55 4.26 R
1546 1750 0.461961 AGTTCTAGGATCCGCAGTGC 59.538 55.000 4.58 4.58 0.00 4.40 R
1762 2438 0.605319 GTGGTTGCAGGACATCGGAA 60.605 55.000 0.00 0.00 0.00 4.30 R
2340 3054 0.764890 GACCTACCATGGCAGCCATA 59.235 55.000 27.22 10.96 43.15 2.74 R
2864 3605 1.744522 CATGAATGATGAACGTGCCCA 59.255 47.619 0.00 0.00 33.31 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.527186 CTACGAGCGCGGCAATAG 58.473 61.111 15.86 2.69 43.17 1.73
18 19 1.008881 CTACGAGCGCGGCAATAGA 60.009 57.895 15.86 0.00 43.17 1.98
19 20 0.387367 CTACGAGCGCGGCAATAGAT 60.387 55.000 15.86 0.00 43.17 1.98
20 21 0.386858 TACGAGCGCGGCAATAGATC 60.387 55.000 15.86 0.00 43.17 2.75
21 22 1.661509 CGAGCGCGGCAATAGATCA 60.662 57.895 8.83 0.00 0.00 2.92
22 23 1.215014 CGAGCGCGGCAATAGATCAA 61.215 55.000 8.83 0.00 0.00 2.57
23 24 0.510359 GAGCGCGGCAATAGATCAAG 59.490 55.000 8.83 0.00 0.00 3.02
24 25 0.104855 AGCGCGGCAATAGATCAAGA 59.895 50.000 8.83 0.00 0.00 3.02
25 26 1.151668 GCGCGGCAATAGATCAAGAT 58.848 50.000 8.83 0.00 0.00 2.40
26 27 1.127582 GCGCGGCAATAGATCAAGATC 59.872 52.381 8.83 1.81 38.09 2.75
27 28 1.388093 CGCGGCAATAGATCAAGATCG 59.612 52.381 0.00 0.00 42.48 3.69
28 29 1.728971 GCGGCAATAGATCAAGATCGG 59.271 52.381 4.54 0.00 42.48 4.18
29 30 1.728971 CGGCAATAGATCAAGATCGGC 59.271 52.381 4.54 7.27 42.48 5.54
30 31 2.079925 GGCAATAGATCAAGATCGGCC 58.920 52.381 16.29 16.29 42.48 6.13
31 32 1.728971 GCAATAGATCAAGATCGGCCG 59.271 52.381 22.12 22.12 42.48 6.13
32 33 2.868044 GCAATAGATCAAGATCGGCCGT 60.868 50.000 27.15 12.96 42.48 5.68
33 34 2.732412 ATAGATCAAGATCGGCCGTG 57.268 50.000 27.15 16.50 42.48 4.94
34 35 0.032130 TAGATCAAGATCGGCCGTGC 59.968 55.000 27.15 18.16 42.48 5.34
35 36 2.586079 ATCAAGATCGGCCGTGCG 60.586 61.111 27.15 10.62 0.00 5.34
47 48 4.435436 CGTGCGCTGCTAGACCCA 62.435 66.667 9.73 0.00 0.00 4.51
48 49 2.510238 GTGCGCTGCTAGACCCAG 60.510 66.667 9.73 0.00 0.00 4.45
55 56 1.186200 CTGCTAGACCCAGCACTACA 58.814 55.000 0.00 0.00 46.41 2.74
56 57 0.895530 TGCTAGACCCAGCACTACAC 59.104 55.000 0.00 0.00 46.41 2.90
57 58 0.175989 GCTAGACCCAGCACTACACC 59.824 60.000 0.00 0.00 41.40 4.16
58 59 0.824759 CTAGACCCAGCACTACACCC 59.175 60.000 0.00 0.00 0.00 4.61
59 60 0.412244 TAGACCCAGCACTACACCCT 59.588 55.000 0.00 0.00 0.00 4.34
60 61 0.412244 AGACCCAGCACTACACCCTA 59.588 55.000 0.00 0.00 0.00 3.53
61 62 1.008449 AGACCCAGCACTACACCCTAT 59.992 52.381 0.00 0.00 0.00 2.57
62 63 2.246588 AGACCCAGCACTACACCCTATA 59.753 50.000 0.00 0.00 0.00 1.31
63 64 3.036091 GACCCAGCACTACACCCTATAA 58.964 50.000 0.00 0.00 0.00 0.98
64 65 3.453353 GACCCAGCACTACACCCTATAAA 59.547 47.826 0.00 0.00 0.00 1.40
65 66 3.199289 ACCCAGCACTACACCCTATAAAC 59.801 47.826 0.00 0.00 0.00 2.01
66 67 3.454375 CCAGCACTACACCCTATAAACG 58.546 50.000 0.00 0.00 0.00 3.60
67 68 3.454375 CAGCACTACACCCTATAAACGG 58.546 50.000 0.00 0.00 0.00 4.44
68 69 3.102204 AGCACTACACCCTATAAACGGT 58.898 45.455 0.00 0.00 0.00 4.83
69 70 3.516700 AGCACTACACCCTATAAACGGTT 59.483 43.478 0.00 0.00 0.00 4.44
70 71 3.867493 GCACTACACCCTATAAACGGTTC 59.133 47.826 0.00 0.00 0.00 3.62
71 72 4.621274 GCACTACACCCTATAAACGGTTCA 60.621 45.833 0.00 0.00 0.00 3.18
72 73 5.107133 CACTACACCCTATAAACGGTTCAG 58.893 45.833 0.00 0.00 0.00 3.02
73 74 3.622166 ACACCCTATAAACGGTTCAGG 57.378 47.619 6.77 6.77 0.00 3.86
74 75 2.285977 CACCCTATAAACGGTTCAGGC 58.714 52.381 8.03 0.00 0.00 4.85
75 76 2.093128 CACCCTATAAACGGTTCAGGCT 60.093 50.000 8.03 0.00 0.00 4.58
76 77 2.169978 ACCCTATAAACGGTTCAGGCTC 59.830 50.000 8.03 0.00 0.00 4.70
77 78 2.470821 CCTATAAACGGTTCAGGCTCG 58.529 52.381 0.00 0.00 0.00 5.03
78 79 1.859080 CTATAAACGGTTCAGGCTCGC 59.141 52.381 0.00 0.00 0.00 5.03
79 80 0.249398 ATAAACGGTTCAGGCTCGCT 59.751 50.000 0.00 0.00 0.00 4.93
80 81 0.889994 TAAACGGTTCAGGCTCGCTA 59.110 50.000 0.00 0.00 0.00 4.26
81 82 0.389948 AAACGGTTCAGGCTCGCTAG 60.390 55.000 0.00 0.00 0.00 3.42
82 83 2.105128 CGGTTCAGGCTCGCTAGG 59.895 66.667 0.00 0.00 0.00 3.02
83 84 2.711922 CGGTTCAGGCTCGCTAGGT 61.712 63.158 0.00 0.00 0.00 3.08
84 85 1.597461 GGTTCAGGCTCGCTAGGTT 59.403 57.895 0.00 0.00 0.00 3.50
85 86 0.036294 GGTTCAGGCTCGCTAGGTTT 60.036 55.000 0.00 0.00 0.00 3.27
86 87 1.610886 GGTTCAGGCTCGCTAGGTTTT 60.611 52.381 0.00 0.00 0.00 2.43
87 88 1.464997 GTTCAGGCTCGCTAGGTTTTG 59.535 52.381 0.00 0.00 0.00 2.44
88 89 0.685097 TCAGGCTCGCTAGGTTTTGT 59.315 50.000 0.00 0.00 0.00 2.83
89 90 1.079503 CAGGCTCGCTAGGTTTTGTC 58.920 55.000 0.00 0.00 0.00 3.18
90 91 0.389948 AGGCTCGCTAGGTTTTGTCG 60.390 55.000 0.00 0.00 0.00 4.35
91 92 0.669625 GGCTCGCTAGGTTTTGTCGT 60.670 55.000 0.00 0.00 0.00 4.34
92 93 1.145803 GCTCGCTAGGTTTTGTCGTT 58.854 50.000 0.00 0.00 0.00 3.85
93 94 1.126296 GCTCGCTAGGTTTTGTCGTTC 59.874 52.381 0.00 0.00 0.00 3.95
94 95 1.725164 CTCGCTAGGTTTTGTCGTTCC 59.275 52.381 0.00 0.00 0.00 3.62
95 96 0.794473 CGCTAGGTTTTGTCGTTCCC 59.206 55.000 0.00 0.00 0.00 3.97
96 97 1.607251 CGCTAGGTTTTGTCGTTCCCT 60.607 52.381 0.00 0.00 0.00 4.20
97 98 1.804748 GCTAGGTTTTGTCGTTCCCTG 59.195 52.381 0.00 0.00 0.00 4.45
98 99 2.423577 CTAGGTTTTGTCGTTCCCTGG 58.576 52.381 0.00 0.00 0.00 4.45
99 100 0.841289 AGGTTTTGTCGTTCCCTGGA 59.159 50.000 0.00 0.00 0.00 3.86
100 101 1.423921 AGGTTTTGTCGTTCCCTGGAT 59.576 47.619 0.00 0.00 0.00 3.41
101 102 2.158519 AGGTTTTGTCGTTCCCTGGATT 60.159 45.455 0.00 0.00 0.00 3.01
102 103 2.626266 GGTTTTGTCGTTCCCTGGATTT 59.374 45.455 0.00 0.00 0.00 2.17
103 104 3.069016 GGTTTTGTCGTTCCCTGGATTTT 59.931 43.478 0.00 0.00 0.00 1.82
104 105 4.442332 GGTTTTGTCGTTCCCTGGATTTTT 60.442 41.667 0.00 0.00 0.00 1.94
123 124 3.390003 TTTTTGTCCGGCGAGTTCT 57.610 47.368 9.30 0.00 0.00 3.01
124 125 1.670791 TTTTTGTCCGGCGAGTTCTT 58.329 45.000 9.30 0.00 0.00 2.52
125 126 1.670791 TTTTGTCCGGCGAGTTCTTT 58.329 45.000 9.30 0.00 0.00 2.52
126 127 1.670791 TTTGTCCGGCGAGTTCTTTT 58.329 45.000 9.30 0.00 0.00 2.27
127 128 1.670791 TTGTCCGGCGAGTTCTTTTT 58.329 45.000 9.30 0.00 0.00 1.94
128 129 1.223187 TGTCCGGCGAGTTCTTTTTC 58.777 50.000 9.30 0.00 0.00 2.29
129 130 1.202604 TGTCCGGCGAGTTCTTTTTCT 60.203 47.619 9.30 0.00 0.00 2.52
130 131 1.871676 GTCCGGCGAGTTCTTTTTCTT 59.128 47.619 9.30 0.00 0.00 2.52
131 132 2.289820 GTCCGGCGAGTTCTTTTTCTTT 59.710 45.455 9.30 0.00 0.00 2.52
132 133 2.946990 TCCGGCGAGTTCTTTTTCTTTT 59.053 40.909 9.30 0.00 0.00 2.27
133 134 3.002965 TCCGGCGAGTTCTTTTTCTTTTC 59.997 43.478 9.30 0.00 0.00 2.29
134 135 3.297472 CGGCGAGTTCTTTTTCTTTTCC 58.703 45.455 0.00 0.00 0.00 3.13
135 136 3.297472 GGCGAGTTCTTTTTCTTTTCCG 58.703 45.455 0.00 0.00 0.00 4.30
136 137 3.297472 GCGAGTTCTTTTTCTTTTCCGG 58.703 45.455 0.00 0.00 0.00 5.14
137 138 3.242969 GCGAGTTCTTTTTCTTTTCCGGT 60.243 43.478 0.00 0.00 0.00 5.28
138 139 4.279659 CGAGTTCTTTTTCTTTTCCGGTG 58.720 43.478 0.00 0.00 0.00 4.94
139 140 4.041740 AGTTCTTTTTCTTTTCCGGTGC 57.958 40.909 0.00 0.00 0.00 5.01
140 141 3.445805 AGTTCTTTTTCTTTTCCGGTGCA 59.554 39.130 0.00 0.00 0.00 4.57
141 142 3.430333 TCTTTTTCTTTTCCGGTGCAC 57.570 42.857 8.80 8.80 0.00 4.57
142 143 2.755655 TCTTTTTCTTTTCCGGTGCACA 59.244 40.909 20.43 0.00 0.00 4.57
143 144 3.193691 TCTTTTTCTTTTCCGGTGCACAA 59.806 39.130 20.43 0.88 0.00 3.33
144 145 2.861462 TTTCTTTTCCGGTGCACAAG 57.139 45.000 20.43 13.05 0.00 3.16
145 146 2.045561 TTCTTTTCCGGTGCACAAGA 57.954 45.000 20.43 15.24 0.00 3.02
146 147 2.270352 TCTTTTCCGGTGCACAAGAT 57.730 45.000 20.43 0.00 0.00 2.40
147 148 1.879380 TCTTTTCCGGTGCACAAGATG 59.121 47.619 20.43 7.90 0.00 2.90
148 149 0.958091 TTTTCCGGTGCACAAGATGG 59.042 50.000 20.43 11.65 0.00 3.51
149 150 0.179004 TTTCCGGTGCACAAGATGGT 60.179 50.000 20.43 0.00 0.00 3.55
150 151 0.888736 TTCCGGTGCACAAGATGGTG 60.889 55.000 20.43 0.00 41.72 4.17
151 152 1.302431 CCGGTGCACAAGATGGTGA 60.302 57.895 20.43 0.00 41.32 4.02
152 153 1.577328 CCGGTGCACAAGATGGTGAC 61.577 60.000 20.43 0.00 41.32 3.67
153 154 1.577328 CGGTGCACAAGATGGTGACC 61.577 60.000 20.43 0.00 41.32 4.02
154 155 1.577328 GGTGCACAAGATGGTGACCG 61.577 60.000 20.43 0.00 41.32 4.79
155 156 0.884704 GTGCACAAGATGGTGACCGT 60.885 55.000 13.17 0.00 41.32 4.83
156 157 0.884259 TGCACAAGATGGTGACCGTG 60.884 55.000 0.00 1.12 41.32 4.94
157 158 0.884704 GCACAAGATGGTGACCGTGT 60.885 55.000 0.00 0.00 41.32 4.49
158 159 0.867746 CACAAGATGGTGACCGTGTG 59.132 55.000 0.00 7.10 41.32 3.82
159 160 0.468226 ACAAGATGGTGACCGTGTGT 59.532 50.000 0.00 2.22 0.00 3.72
160 161 1.148310 CAAGATGGTGACCGTGTGTC 58.852 55.000 0.00 0.00 44.72 3.67
167 168 2.860293 GACCGTGTGTCATTGGCG 59.140 61.111 0.00 0.00 43.85 5.69
168 169 2.668212 ACCGTGTGTCATTGGCGG 60.668 61.111 0.00 0.00 46.83 6.13
169 170 4.101790 CCGTGTGTCATTGGCGGC 62.102 66.667 0.00 0.00 35.90 6.53
170 171 4.101790 CGTGTGTCATTGGCGGCC 62.102 66.667 13.32 13.32 0.00 6.13
171 172 2.983030 GTGTGTCATTGGCGGCCA 60.983 61.111 19.77 19.77 0.00 5.36
172 173 2.983030 TGTGTCATTGGCGGCCAC 60.983 61.111 23.78 11.04 30.78 5.01
173 174 3.747976 GTGTCATTGGCGGCCACC 61.748 66.667 23.78 10.55 30.78 4.61
174 175 3.965258 TGTCATTGGCGGCCACCT 61.965 61.111 23.78 9.54 30.78 4.00
175 176 3.443045 GTCATTGGCGGCCACCTG 61.443 66.667 23.78 21.32 30.78 4.00
185 186 4.101448 GCCACCTGCGGAGGACAT 62.101 66.667 31.46 3.93 42.93 3.06
186 187 2.124983 CCACCTGCGGAGGACATG 60.125 66.667 31.46 17.32 42.93 3.21
187 188 2.659063 CCACCTGCGGAGGACATGA 61.659 63.158 31.46 0.00 42.93 3.07
188 189 1.524002 CACCTGCGGAGGACATGAT 59.476 57.895 31.46 2.13 42.93 2.45
189 190 0.107508 CACCTGCGGAGGACATGATT 60.108 55.000 31.46 1.25 42.93 2.57
190 191 1.138859 CACCTGCGGAGGACATGATTA 59.861 52.381 31.46 0.00 42.93 1.75
191 192 1.837439 ACCTGCGGAGGACATGATTAA 59.163 47.619 31.46 0.00 42.93 1.40
192 193 2.238646 ACCTGCGGAGGACATGATTAAA 59.761 45.455 31.46 0.00 42.93 1.52
193 194 3.278574 CCTGCGGAGGACATGATTAAAA 58.721 45.455 19.84 0.00 42.93 1.52
194 195 3.885297 CCTGCGGAGGACATGATTAAAAT 59.115 43.478 19.84 0.00 42.93 1.82
195 196 4.023707 CCTGCGGAGGACATGATTAAAATC 60.024 45.833 19.84 0.00 42.93 2.17
196 197 6.433522 CCTGCGGAGGACATGATTAAAATCA 61.434 44.000 19.84 7.79 44.73 2.57
197 198 7.849194 CCTGCGGAGGACATGATTAAAATCAA 61.849 42.308 19.84 0.00 44.24 2.57
198 199 9.740134 CCTGCGGAGGACATGATTAAAATCAAC 62.740 44.444 19.84 4.91 44.24 3.18
219 220 7.667557 TCAACCTAGATTGATCCTTTATACCG 58.332 38.462 0.00 0.00 33.62 4.02
220 221 6.607004 ACCTAGATTGATCCTTTATACCGG 57.393 41.667 0.00 0.00 0.00 5.28
221 222 5.484290 ACCTAGATTGATCCTTTATACCGGG 59.516 44.000 6.32 0.00 0.00 5.73
222 223 5.484290 CCTAGATTGATCCTTTATACCGGGT 59.516 44.000 6.32 4.46 0.00 5.28
223 224 5.228945 AGATTGATCCTTTATACCGGGTG 57.771 43.478 10.66 0.00 0.00 4.61
224 225 4.905456 AGATTGATCCTTTATACCGGGTGA 59.095 41.667 10.66 0.00 0.00 4.02
225 226 4.682778 TTGATCCTTTATACCGGGTGAG 57.317 45.455 10.66 2.53 0.00 3.51
226 227 3.649843 TGATCCTTTATACCGGGTGAGT 58.350 45.455 10.66 0.00 0.00 3.41
227 228 3.640029 TGATCCTTTATACCGGGTGAGTC 59.360 47.826 10.66 0.00 0.00 3.36
228 229 3.393426 TCCTTTATACCGGGTGAGTCT 57.607 47.619 10.66 0.00 0.00 3.24
229 230 3.294214 TCCTTTATACCGGGTGAGTCTC 58.706 50.000 10.66 0.00 0.00 3.36
230 231 3.028850 CCTTTATACCGGGTGAGTCTCA 58.971 50.000 10.66 0.00 0.00 3.27
231 232 3.641906 CCTTTATACCGGGTGAGTCTCAT 59.358 47.826 10.66 0.00 0.00 2.90
232 233 4.501571 CCTTTATACCGGGTGAGTCTCATG 60.502 50.000 10.66 0.00 0.00 3.07
233 234 0.753262 ATACCGGGTGAGTCTCATGC 59.247 55.000 10.66 0.00 0.00 4.06
234 235 0.324368 TACCGGGTGAGTCTCATGCT 60.324 55.000 10.66 0.00 0.00 3.79
235 236 1.153489 CCGGGTGAGTCTCATGCTG 60.153 63.158 5.68 0.00 0.00 4.41
236 237 1.153489 CGGGTGAGTCTCATGCTGG 60.153 63.158 5.68 0.00 0.00 4.85
237 238 1.607801 CGGGTGAGTCTCATGCTGGA 61.608 60.000 5.68 0.00 0.00 3.86
238 239 0.835941 GGGTGAGTCTCATGCTGGAT 59.164 55.000 5.68 0.00 0.00 3.41
239 240 1.211457 GGGTGAGTCTCATGCTGGATT 59.789 52.381 5.68 0.00 0.00 3.01
240 241 2.286872 GGTGAGTCTCATGCTGGATTG 58.713 52.381 5.68 0.00 0.00 2.67
241 242 2.286872 GTGAGTCTCATGCTGGATTGG 58.713 52.381 5.68 0.00 0.00 3.16
242 243 1.307097 GAGTCTCATGCTGGATTGGC 58.693 55.000 0.00 0.00 0.00 4.52
243 244 0.463295 AGTCTCATGCTGGATTGGCG 60.463 55.000 0.00 0.00 0.00 5.69
244 245 1.153107 TCTCATGCTGGATTGGCGG 60.153 57.895 0.00 0.00 0.00 6.13
245 246 2.124193 TCATGCTGGATTGGCGGG 60.124 61.111 0.00 0.00 0.00 6.13
246 247 3.908081 CATGCTGGATTGGCGGGC 61.908 66.667 0.00 0.00 0.00 6.13
275 276 2.203509 CGGGCTAGGTCTCCGGAT 60.204 66.667 3.57 0.00 40.07 4.18
276 277 2.565645 CGGGCTAGGTCTCCGGATG 61.566 68.421 3.57 0.00 40.07 3.51
277 278 2.210711 GGGCTAGGTCTCCGGATGG 61.211 68.421 3.57 0.00 0.00 3.51
278 279 2.737830 GCTAGGTCTCCGGATGGC 59.262 66.667 3.57 0.00 34.14 4.40
279 280 1.834822 GCTAGGTCTCCGGATGGCT 60.835 63.158 3.57 0.00 34.14 4.75
280 281 1.403687 GCTAGGTCTCCGGATGGCTT 61.404 60.000 3.57 0.00 34.14 4.35
281 282 1.996798 CTAGGTCTCCGGATGGCTTA 58.003 55.000 3.57 0.72 34.14 3.09
282 283 2.317040 CTAGGTCTCCGGATGGCTTAA 58.683 52.381 3.57 0.00 34.14 1.85
283 284 1.807814 AGGTCTCCGGATGGCTTAAT 58.192 50.000 3.57 0.00 34.14 1.40
284 285 2.127708 AGGTCTCCGGATGGCTTAATT 58.872 47.619 3.57 0.00 34.14 1.40
285 286 2.158755 AGGTCTCCGGATGGCTTAATTG 60.159 50.000 3.57 0.00 34.14 2.32
286 287 2.421529 GGTCTCCGGATGGCTTAATTGT 60.422 50.000 3.57 0.00 34.14 2.71
287 288 2.614057 GTCTCCGGATGGCTTAATTGTG 59.386 50.000 3.57 0.00 34.14 3.33
288 289 2.238646 TCTCCGGATGGCTTAATTGTGT 59.761 45.455 3.57 0.00 34.14 3.72
289 290 2.355756 CTCCGGATGGCTTAATTGTGTG 59.644 50.000 3.57 0.00 34.14 3.82
290 291 2.091541 CCGGATGGCTTAATTGTGTGT 58.908 47.619 0.00 0.00 0.00 3.72
291 292 2.159393 CCGGATGGCTTAATTGTGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
292 293 2.731968 CGGATGGCTTAATTGTGTGTGC 60.732 50.000 0.00 0.00 0.00 4.57
293 294 2.417243 GGATGGCTTAATTGTGTGTGCC 60.417 50.000 0.00 0.00 40.62 5.01
294 295 0.965439 TGGCTTAATTGTGTGTGCCC 59.035 50.000 0.00 0.00 39.60 5.36
295 296 0.109319 GGCTTAATTGTGTGTGCCCG 60.109 55.000 0.00 0.00 34.81 6.13
296 297 0.109319 GCTTAATTGTGTGTGCCCGG 60.109 55.000 0.00 0.00 0.00 5.73
297 298 0.525761 CTTAATTGTGTGTGCCCGGG 59.474 55.000 19.09 19.09 0.00 5.73
298 299 1.528292 TTAATTGTGTGTGCCCGGGC 61.528 55.000 39.40 39.40 42.35 6.13
311 312 4.227134 CGGGCCGGTCATCAGGAG 62.227 72.222 20.56 0.00 0.00 3.69
312 313 2.764128 GGGCCGGTCATCAGGAGA 60.764 66.667 9.07 0.00 0.00 3.71
313 314 2.367202 GGGCCGGTCATCAGGAGAA 61.367 63.158 9.07 0.00 0.00 2.87
314 315 1.700042 GGGCCGGTCATCAGGAGAAT 61.700 60.000 9.07 0.00 0.00 2.40
315 316 1.048601 GGCCGGTCATCAGGAGAATA 58.951 55.000 0.00 0.00 0.00 1.75
316 317 1.625818 GGCCGGTCATCAGGAGAATAT 59.374 52.381 0.00 0.00 0.00 1.28
317 318 2.354203 GGCCGGTCATCAGGAGAATATC 60.354 54.545 0.00 0.00 0.00 1.63
318 319 2.672478 GCCGGTCATCAGGAGAATATCG 60.672 54.545 1.90 0.00 0.00 2.92
319 320 2.820197 CCGGTCATCAGGAGAATATCGA 59.180 50.000 0.00 0.00 0.00 3.59
320 321 3.119673 CCGGTCATCAGGAGAATATCGAG 60.120 52.174 0.00 0.00 0.00 4.04
321 322 3.119673 CGGTCATCAGGAGAATATCGAGG 60.120 52.174 0.00 0.00 0.00 4.63
322 323 4.082845 GGTCATCAGGAGAATATCGAGGA 58.917 47.826 0.00 0.00 0.00 3.71
323 324 4.082463 GGTCATCAGGAGAATATCGAGGAC 60.082 50.000 0.00 0.00 36.84 3.85
324 325 3.753797 TCATCAGGAGAATATCGAGGACG 59.246 47.826 0.00 0.00 41.26 4.79
325 326 1.880675 TCAGGAGAATATCGAGGACGC 59.119 52.381 0.00 0.00 39.58 5.19
326 327 1.609072 CAGGAGAATATCGAGGACGCA 59.391 52.381 0.00 0.00 39.58 5.24
327 328 2.230025 CAGGAGAATATCGAGGACGCAT 59.770 50.000 0.00 0.00 39.58 4.73
328 329 2.894126 AGGAGAATATCGAGGACGCATT 59.106 45.455 0.00 0.00 39.58 3.56
329 330 3.057174 AGGAGAATATCGAGGACGCATTC 60.057 47.826 0.00 0.00 39.05 2.67
330 331 2.911723 GAGAATATCGAGGACGCATTCG 59.088 50.000 0.00 0.00 41.19 3.34
331 332 1.387084 GAATATCGAGGACGCATTCGC 59.613 52.381 0.00 0.00 39.84 4.70
332 333 0.313987 ATATCGAGGACGCATTCGCA 59.686 50.000 0.00 0.00 39.84 5.10
333 334 0.317854 TATCGAGGACGCATTCGCAG 60.318 55.000 0.00 0.00 39.84 5.18
334 335 3.918220 CGAGGACGCATTCGCAGC 61.918 66.667 0.00 0.00 39.84 5.25
335 336 2.510238 GAGGACGCATTCGCAGCT 60.510 61.111 0.00 0.00 39.84 4.24
336 337 2.806856 GAGGACGCATTCGCAGCTG 61.807 63.158 10.11 10.11 39.84 4.24
337 338 2.815211 GGACGCATTCGCAGCTGA 60.815 61.111 20.43 0.00 39.84 4.26
338 339 2.390599 GGACGCATTCGCAGCTGAA 61.391 57.895 20.43 3.67 39.84 3.02
339 340 1.059994 GACGCATTCGCAGCTGAAG 59.940 57.895 20.43 10.80 39.84 3.02
340 341 2.277120 CGCATTCGCAGCTGAAGC 60.277 61.111 20.43 11.71 38.40 3.86
341 342 2.101770 GCATTCGCAGCTGAAGCC 59.898 61.111 20.43 0.00 43.38 4.35
342 343 2.404995 GCATTCGCAGCTGAAGCCT 61.405 57.895 20.43 0.00 43.38 4.58
343 344 1.428219 CATTCGCAGCTGAAGCCTG 59.572 57.895 20.43 7.29 43.38 4.85
344 345 1.002868 ATTCGCAGCTGAAGCCTGT 60.003 52.632 20.43 0.00 43.38 4.00
345 346 1.303799 ATTCGCAGCTGAAGCCTGTG 61.304 55.000 20.43 0.00 43.38 3.66
346 347 2.665008 TTCGCAGCTGAAGCCTGTGT 62.665 55.000 20.43 0.00 43.38 3.72
347 348 2.675056 CGCAGCTGAAGCCTGTGTC 61.675 63.158 20.43 0.00 43.38 3.67
348 349 1.598962 GCAGCTGAAGCCTGTGTCA 60.599 57.895 20.43 0.00 43.38 3.58
349 350 0.959372 GCAGCTGAAGCCTGTGTCAT 60.959 55.000 20.43 0.00 43.38 3.06
350 351 0.803117 CAGCTGAAGCCTGTGTCATG 59.197 55.000 8.42 0.00 43.38 3.07
351 352 0.399454 AGCTGAAGCCTGTGTCATGT 59.601 50.000 0.00 0.00 43.38 3.21
352 353 0.801251 GCTGAAGCCTGTGTCATGTC 59.199 55.000 0.00 0.00 34.31 3.06
353 354 1.879372 GCTGAAGCCTGTGTCATGTCA 60.879 52.381 0.00 0.00 34.31 3.58
354 355 1.802960 CTGAAGCCTGTGTCATGTCAC 59.197 52.381 15.09 15.09 38.63 3.67
355 356 1.140652 TGAAGCCTGTGTCATGTCACA 59.859 47.619 21.74 21.74 44.54 3.58
356 357 2.224597 TGAAGCCTGTGTCATGTCACAT 60.225 45.455 22.98 10.74 45.38 3.21
357 358 1.817357 AGCCTGTGTCATGTCACATG 58.183 50.000 22.98 20.75 45.38 3.21
358 359 0.169672 GCCTGTGTCATGTCACATGC 59.830 55.000 27.09 27.09 46.21 4.06
359 360 1.817357 CCTGTGTCATGTCACATGCT 58.183 50.000 22.98 0.00 45.38 3.79
360 361 1.467342 CCTGTGTCATGTCACATGCTG 59.533 52.381 22.98 12.94 45.38 4.41
361 362 2.148768 CTGTGTCATGTCACATGCTGT 58.851 47.619 22.98 0.00 45.38 4.40
362 363 2.145536 TGTGTCATGTCACATGCTGTC 58.854 47.619 19.77 4.35 42.36 3.51
363 364 2.145536 GTGTCATGTCACATGCTGTCA 58.854 47.619 13.41 6.77 38.12 3.58
364 365 2.096069 GTGTCATGTCACATGCTGTCAC 60.096 50.000 13.41 14.08 38.12 3.67
365 366 2.145536 GTCATGTCACATGCTGTCACA 58.854 47.619 13.41 0.00 0.00 3.58
366 367 2.159037 GTCATGTCACATGCTGTCACAG 59.841 50.000 13.41 0.00 34.12 3.66
367 368 2.148768 CATGTCACATGCTGTCACAGT 58.851 47.619 4.43 0.00 33.43 3.55
368 369 2.330440 TGTCACATGCTGTCACAGTT 57.670 45.000 6.68 0.00 33.43 3.16
369 370 1.941975 TGTCACATGCTGTCACAGTTG 59.058 47.619 6.68 7.46 33.43 3.16
370 371 0.946528 TCACATGCTGTCACAGTTGC 59.053 50.000 6.68 0.00 33.43 4.17
371 372 0.949397 CACATGCTGTCACAGTTGCT 59.051 50.000 6.68 0.00 33.43 3.91
372 373 0.949397 ACATGCTGTCACAGTTGCTG 59.051 50.000 6.68 1.91 37.52 4.41
373 374 0.386858 CATGCTGTCACAGTTGCTGC 60.387 55.000 6.68 0.00 34.37 5.25
374 375 0.536687 ATGCTGTCACAGTTGCTGCT 60.537 50.000 6.68 0.00 34.37 4.24
375 376 1.281960 GCTGTCACAGTTGCTGCTG 59.718 57.895 6.68 6.56 41.92 4.41
376 377 1.162181 GCTGTCACAGTTGCTGCTGA 61.162 55.000 6.68 0.00 39.62 4.26
377 378 1.520494 CTGTCACAGTTGCTGCTGAT 58.480 50.000 13.53 0.00 39.62 2.90
378 379 1.463831 CTGTCACAGTTGCTGCTGATC 59.536 52.381 13.53 0.00 39.62 2.92
379 380 0.801251 GTCACAGTTGCTGCTGATCC 59.199 55.000 13.53 0.00 39.62 3.36
380 381 0.397564 TCACAGTTGCTGCTGATCCA 59.602 50.000 13.53 0.00 39.62 3.41
381 382 0.803117 CACAGTTGCTGCTGATCCAG 59.197 55.000 13.53 0.00 39.62 3.86
382 383 0.322277 ACAGTTGCTGCTGATCCAGG 60.322 55.000 13.53 0.00 39.62 4.45
383 384 1.030488 CAGTTGCTGCTGATCCAGGG 61.030 60.000 0.00 0.00 38.70 4.45
384 385 1.203441 AGTTGCTGCTGATCCAGGGA 61.203 55.000 0.00 0.00 33.44 4.20
385 386 0.106819 GTTGCTGCTGATCCAGGGAT 60.107 55.000 0.00 0.00 37.59 3.85
386 387 0.106868 TTGCTGCTGATCCAGGGATG 60.107 55.000 5.35 0.00 34.60 3.51
387 388 0.984432 TGCTGCTGATCCAGGGATGA 60.984 55.000 5.35 0.00 34.60 2.92
388 389 0.400975 GCTGCTGATCCAGGGATGAT 59.599 55.000 5.35 0.00 34.60 2.45
389 390 1.627329 GCTGCTGATCCAGGGATGATA 59.373 52.381 5.35 0.00 34.60 2.15
390 391 2.039480 GCTGCTGATCCAGGGATGATAA 59.961 50.000 5.35 0.00 34.60 1.75
391 392 3.869140 GCTGCTGATCCAGGGATGATAAG 60.869 52.174 5.35 0.00 34.60 1.73
392 393 2.641321 TGCTGATCCAGGGATGATAAGG 59.359 50.000 5.35 0.00 34.60 2.69
393 394 2.026449 GCTGATCCAGGGATGATAAGGG 60.026 54.545 5.35 0.00 34.60 3.95
394 395 3.254960 CTGATCCAGGGATGATAAGGGT 58.745 50.000 5.35 0.00 34.60 4.34
395 396 2.981784 TGATCCAGGGATGATAAGGGTG 59.018 50.000 5.35 0.00 34.60 4.61
396 397 1.819753 TCCAGGGATGATAAGGGTGG 58.180 55.000 0.00 0.00 0.00 4.61
397 398 1.010793 TCCAGGGATGATAAGGGTGGT 59.989 52.381 0.00 0.00 0.00 4.16
398 399 1.421646 CCAGGGATGATAAGGGTGGTC 59.578 57.143 0.00 0.00 0.00 4.02
399 400 2.412591 CAGGGATGATAAGGGTGGTCT 58.587 52.381 0.00 0.00 0.00 3.85
400 401 2.780010 CAGGGATGATAAGGGTGGTCTT 59.220 50.000 0.00 0.00 0.00 3.01
401 402 3.203040 CAGGGATGATAAGGGTGGTCTTT 59.797 47.826 0.00 0.00 0.00 2.52
402 403 3.203040 AGGGATGATAAGGGTGGTCTTTG 59.797 47.826 0.00 0.00 0.00 2.77
403 404 3.202151 GGGATGATAAGGGTGGTCTTTGA 59.798 47.826 0.00 0.00 0.00 2.69
404 405 4.455606 GGATGATAAGGGTGGTCTTTGAG 58.544 47.826 0.00 0.00 0.00 3.02
405 406 4.164221 GGATGATAAGGGTGGTCTTTGAGA 59.836 45.833 0.00 0.00 0.00 3.27
406 407 4.553330 TGATAAGGGTGGTCTTTGAGAC 57.447 45.455 0.00 0.00 44.32 3.36
407 408 3.056107 TGATAAGGGTGGTCTTTGAGACG 60.056 47.826 2.33 0.00 45.96 4.18
408 409 0.396811 AAGGGTGGTCTTTGAGACGG 59.603 55.000 2.33 0.00 45.96 4.79
409 410 0.471211 AGGGTGGTCTTTGAGACGGA 60.471 55.000 2.33 0.00 45.96 4.69
410 411 0.320508 GGGTGGTCTTTGAGACGGAC 60.321 60.000 2.33 2.19 45.96 4.79
411 412 0.680061 GGTGGTCTTTGAGACGGACT 59.320 55.000 2.33 0.00 45.96 3.85
412 413 1.336980 GGTGGTCTTTGAGACGGACTC 60.337 57.143 0.38 0.38 45.96 3.36
420 421 3.410098 GAGACGGACTCACAGCTTC 57.590 57.895 2.60 0.00 44.36 3.86
421 422 0.885196 GAGACGGACTCACAGCTTCT 59.115 55.000 2.60 0.00 44.36 2.85
422 423 0.885196 AGACGGACTCACAGCTTCTC 59.115 55.000 0.00 0.00 0.00 2.87
423 424 0.109039 GACGGACTCACAGCTTCTCC 60.109 60.000 0.00 0.00 0.00 3.71
424 425 0.827925 ACGGACTCACAGCTTCTCCA 60.828 55.000 0.00 0.00 0.00 3.86
425 426 0.108898 CGGACTCACAGCTTCTCCAG 60.109 60.000 0.00 0.00 0.00 3.86
426 427 0.248843 GGACTCACAGCTTCTCCAGG 59.751 60.000 0.00 0.00 0.00 4.45
427 428 1.261480 GACTCACAGCTTCTCCAGGA 58.739 55.000 0.00 0.00 0.00 3.86
428 429 1.620819 GACTCACAGCTTCTCCAGGAA 59.379 52.381 0.00 0.00 0.00 3.36
437 438 3.692257 CTTCTCCAGGAAGCTCTTGAA 57.308 47.619 0.00 0.00 43.88 2.69
438 439 4.219264 CTTCTCCAGGAAGCTCTTGAAT 57.781 45.455 0.00 0.00 43.88 2.57
439 440 4.587891 CTTCTCCAGGAAGCTCTTGAATT 58.412 43.478 0.00 0.00 43.88 2.17
440 441 5.738909 CTTCTCCAGGAAGCTCTTGAATTA 58.261 41.667 0.00 0.00 43.88 1.40
441 442 5.350504 TCTCCAGGAAGCTCTTGAATTAG 57.649 43.478 0.00 0.00 0.00 1.73
442 443 3.876320 CTCCAGGAAGCTCTTGAATTAGC 59.124 47.826 0.00 0.00 39.08 3.09
443 444 2.611292 CCAGGAAGCTCTTGAATTAGCG 59.389 50.000 0.00 0.00 43.63 4.26
444 445 3.525537 CAGGAAGCTCTTGAATTAGCGA 58.474 45.455 0.00 0.00 43.63 4.93
445 446 3.935203 CAGGAAGCTCTTGAATTAGCGAA 59.065 43.478 0.00 0.00 43.63 4.70
446 447 4.574013 CAGGAAGCTCTTGAATTAGCGAAT 59.426 41.667 0.00 0.00 43.63 3.34
447 448 5.755375 CAGGAAGCTCTTGAATTAGCGAATA 59.245 40.000 0.00 0.00 43.63 1.75
448 449 6.426328 CAGGAAGCTCTTGAATTAGCGAATAT 59.574 38.462 0.00 0.00 43.63 1.28
449 450 6.426328 AGGAAGCTCTTGAATTAGCGAATATG 59.574 38.462 0.00 0.00 43.63 1.78
450 451 6.348050 GGAAGCTCTTGAATTAGCGAATATGG 60.348 42.308 0.00 0.00 43.63 2.74
451 452 4.999950 AGCTCTTGAATTAGCGAATATGGG 59.000 41.667 0.00 0.00 43.63 4.00
452 453 4.757149 GCTCTTGAATTAGCGAATATGGGT 59.243 41.667 0.00 0.00 0.00 4.51
453 454 5.106908 GCTCTTGAATTAGCGAATATGGGTC 60.107 44.000 0.00 0.00 0.00 4.46
454 455 4.988540 TCTTGAATTAGCGAATATGGGTCG 59.011 41.667 0.00 0.00 41.46 4.79
463 464 2.157668 CGAATATGGGTCGCTTGTATGC 59.842 50.000 0.00 0.00 0.00 3.14
464 465 3.403038 GAATATGGGTCGCTTGTATGCT 58.597 45.455 0.00 0.00 0.00 3.79
465 466 2.526304 TATGGGTCGCTTGTATGCTC 57.474 50.000 0.00 0.00 0.00 4.26
466 467 0.179045 ATGGGTCGCTTGTATGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
467 468 1.883084 GGGTCGCTTGTATGCTCCG 60.883 63.158 0.00 0.00 0.00 4.63
468 469 1.141019 GGTCGCTTGTATGCTCCGA 59.859 57.895 0.00 0.00 0.00 4.55
469 470 0.459585 GGTCGCTTGTATGCTCCGAA 60.460 55.000 0.00 0.00 0.00 4.30
470 471 0.645868 GTCGCTTGTATGCTCCGAAC 59.354 55.000 0.00 0.00 0.00 3.95
471 472 0.530744 TCGCTTGTATGCTCCGAACT 59.469 50.000 0.00 0.00 0.00 3.01
472 473 1.746787 TCGCTTGTATGCTCCGAACTA 59.253 47.619 0.00 0.00 0.00 2.24
473 474 1.852895 CGCTTGTATGCTCCGAACTAC 59.147 52.381 0.00 0.00 0.00 2.73
474 475 2.479730 CGCTTGTATGCTCCGAACTACT 60.480 50.000 0.00 0.00 0.00 2.57
475 476 3.242969 CGCTTGTATGCTCCGAACTACTA 60.243 47.826 0.00 0.00 0.00 1.82
476 477 4.556898 CGCTTGTATGCTCCGAACTACTAT 60.557 45.833 0.00 0.00 0.00 2.12
477 478 4.681942 GCTTGTATGCTCCGAACTACTATG 59.318 45.833 0.00 0.00 0.00 2.23
478 479 5.736492 GCTTGTATGCTCCGAACTACTATGT 60.736 44.000 0.00 0.00 0.00 2.29
479 480 5.183014 TGTATGCTCCGAACTACTATGTG 57.817 43.478 0.00 0.00 0.00 3.21
480 481 3.735237 ATGCTCCGAACTACTATGTGG 57.265 47.619 0.00 0.00 0.00 4.17
481 482 2.730382 TGCTCCGAACTACTATGTGGA 58.270 47.619 0.00 0.00 0.00 4.02
482 483 3.093814 TGCTCCGAACTACTATGTGGAA 58.906 45.455 0.00 0.00 0.00 3.53
483 484 3.704566 TGCTCCGAACTACTATGTGGAAT 59.295 43.478 0.00 0.00 0.00 3.01
484 485 4.051922 GCTCCGAACTACTATGTGGAATG 58.948 47.826 0.00 0.00 0.00 2.67
485 486 4.621991 CTCCGAACTACTATGTGGAATGG 58.378 47.826 0.00 0.00 0.00 3.16
486 487 3.386726 TCCGAACTACTATGTGGAATGGG 59.613 47.826 0.00 0.00 0.00 4.00
487 488 3.386726 CCGAACTACTATGTGGAATGGGA 59.613 47.826 0.00 0.00 0.00 4.37
488 489 4.501571 CCGAACTACTATGTGGAATGGGAG 60.502 50.000 0.00 0.00 0.00 4.30
489 490 4.099573 CGAACTACTATGTGGAATGGGAGT 59.900 45.833 0.00 0.00 0.00 3.85
490 491 5.602628 GAACTACTATGTGGAATGGGAGTC 58.397 45.833 0.00 0.00 0.00 3.36
491 492 3.637229 ACTACTATGTGGAATGGGAGTCG 59.363 47.826 0.00 0.00 0.00 4.18
492 493 1.762957 ACTATGTGGAATGGGAGTCGG 59.237 52.381 0.00 0.00 0.00 4.79
493 494 2.039418 CTATGTGGAATGGGAGTCGGA 58.961 52.381 0.00 0.00 0.00 4.55
494 495 1.511613 ATGTGGAATGGGAGTCGGAT 58.488 50.000 0.00 0.00 0.00 4.18
495 496 0.541392 TGTGGAATGGGAGTCGGATG 59.459 55.000 0.00 0.00 0.00 3.51
496 497 0.541863 GTGGAATGGGAGTCGGATGT 59.458 55.000 0.00 0.00 0.00 3.06
497 498 0.830648 TGGAATGGGAGTCGGATGTC 59.169 55.000 0.00 0.00 0.00 3.06
498 499 0.106894 GGAATGGGAGTCGGATGTCC 59.893 60.000 1.62 1.62 0.00 4.02
508 509 3.809013 GGATGTCCCGGCCCATGT 61.809 66.667 8.62 0.00 0.00 3.21
509 510 2.516930 GATGTCCCGGCCCATGTG 60.517 66.667 8.62 0.00 0.00 3.21
510 511 4.127744 ATGTCCCGGCCCATGTGG 62.128 66.667 0.00 0.00 37.09 4.17
520 521 1.514087 CCCATGTGGCTGAATGTGC 59.486 57.895 0.00 0.00 0.00 4.57
521 522 0.968901 CCCATGTGGCTGAATGTGCT 60.969 55.000 0.00 0.00 0.00 4.40
522 523 0.892755 CCATGTGGCTGAATGTGCTT 59.107 50.000 0.00 0.00 0.00 3.91
523 524 1.274167 CCATGTGGCTGAATGTGCTTT 59.726 47.619 0.00 0.00 0.00 3.51
524 525 2.333926 CATGTGGCTGAATGTGCTTTG 58.666 47.619 0.00 0.00 0.00 2.77
525 526 0.675083 TGTGGCTGAATGTGCTTTGG 59.325 50.000 0.00 0.00 0.00 3.28
526 527 0.037975 GTGGCTGAATGTGCTTTGGG 60.038 55.000 0.00 0.00 0.00 4.12
527 528 0.469705 TGGCTGAATGTGCTTTGGGT 60.470 50.000 0.00 0.00 0.00 4.51
528 529 0.037975 GGCTGAATGTGCTTTGGGTG 60.038 55.000 0.00 0.00 0.00 4.61
529 530 0.961019 GCTGAATGTGCTTTGGGTGA 59.039 50.000 0.00 0.00 0.00 4.02
530 531 1.547372 GCTGAATGTGCTTTGGGTGAT 59.453 47.619 0.00 0.00 0.00 3.06
531 532 2.754552 GCTGAATGTGCTTTGGGTGATA 59.245 45.455 0.00 0.00 0.00 2.15
532 533 3.382546 GCTGAATGTGCTTTGGGTGATAT 59.617 43.478 0.00 0.00 0.00 1.63
533 534 4.735578 GCTGAATGTGCTTTGGGTGATATG 60.736 45.833 0.00 0.00 0.00 1.78
534 535 3.130869 TGAATGTGCTTTGGGTGATATGC 59.869 43.478 0.00 0.00 0.00 3.14
535 536 1.473258 TGTGCTTTGGGTGATATGCC 58.527 50.000 0.00 0.00 0.00 4.40
536 537 0.746659 GTGCTTTGGGTGATATGCCC 59.253 55.000 5.24 5.24 46.26 5.36
549 550 4.073052 TGCCCAAGCACCGTTAAG 57.927 55.556 0.00 0.00 46.52 1.85
550 551 1.149627 TGCCCAAGCACCGTTAAGT 59.850 52.632 0.00 0.00 46.52 2.24
551 552 0.466555 TGCCCAAGCACCGTTAAGTT 60.467 50.000 0.00 0.00 46.52 2.66
552 553 0.671796 GCCCAAGCACCGTTAAGTTT 59.328 50.000 0.00 0.00 39.53 2.66
553 554 1.881324 GCCCAAGCACCGTTAAGTTTA 59.119 47.619 0.00 0.00 39.53 2.01
554 555 2.490509 GCCCAAGCACCGTTAAGTTTAT 59.509 45.455 0.00 0.00 39.53 1.40
555 556 3.690628 GCCCAAGCACCGTTAAGTTTATA 59.309 43.478 0.00 0.00 39.53 0.98
556 557 4.156373 GCCCAAGCACCGTTAAGTTTATAA 59.844 41.667 0.00 0.00 39.53 0.98
557 558 5.335819 GCCCAAGCACCGTTAAGTTTATAAA 60.336 40.000 0.00 0.00 39.53 1.40
558 559 6.319399 CCCAAGCACCGTTAAGTTTATAAAG 58.681 40.000 0.00 0.00 0.00 1.85
559 560 5.798434 CCAAGCACCGTTAAGTTTATAAAGC 59.202 40.000 0.00 0.00 0.00 3.51
560 561 6.349033 CCAAGCACCGTTAAGTTTATAAAGCT 60.349 38.462 0.00 0.00 0.00 3.74
561 562 6.812879 AGCACCGTTAAGTTTATAAAGCTT 57.187 33.333 13.75 13.75 0.00 3.74
562 563 7.210718 AGCACCGTTAAGTTTATAAAGCTTT 57.789 32.000 17.30 17.30 0.00 3.51
563 564 7.081976 AGCACCGTTAAGTTTATAAAGCTTTG 58.918 34.615 22.02 2.50 0.00 2.77
564 565 6.183359 GCACCGTTAAGTTTATAAAGCTTTGC 60.183 38.462 22.02 7.38 0.00 3.68
565 566 7.081976 CACCGTTAAGTTTATAAAGCTTTGCT 58.918 34.615 22.02 11.18 42.56 3.91
616 617 3.000222 CAGTGAAGCAAAAGCGGTTTTTC 60.000 43.478 21.86 17.48 36.87 2.29
617 618 3.119137 AGTGAAGCAAAAGCGGTTTTTCT 60.119 39.130 21.86 19.44 36.87 2.52
619 620 4.437858 GAAGCAAAAGCGGTTTTTCTTC 57.562 40.909 33.03 33.03 43.73 2.87
685 688 3.739080 ATGGAGGAGGCGGGGGATT 62.739 63.158 0.00 0.00 0.00 3.01
686 689 3.878667 GGAGGAGGCGGGGGATTG 61.879 72.222 0.00 0.00 0.00 2.67
695 698 1.037579 GCGGGGGATTGGGAAGAAAG 61.038 60.000 0.00 0.00 0.00 2.62
701 704 3.204382 GGGGATTGGGAAGAAAGATACCA 59.796 47.826 0.00 0.00 0.00 3.25
706 709 1.133761 GGGAAGAAAGATACCAGGGGC 60.134 57.143 0.00 0.00 0.00 5.80
708 711 2.644676 GAAGAAAGATACCAGGGGCAC 58.355 52.381 0.00 0.00 0.00 5.01
736 739 2.354188 GGCCGTGGAAAAACGCAC 60.354 61.111 0.00 0.00 42.23 5.34
739 742 1.001745 GCCGTGGAAAAACGCACATC 61.002 55.000 0.00 0.00 42.23 3.06
743 746 0.871722 TGGAAAAACGCACATCTCCG 59.128 50.000 0.00 0.00 0.00 4.63
744 747 1.153353 GGAAAAACGCACATCTCCGA 58.847 50.000 0.00 0.00 0.00 4.55
745 748 1.128692 GGAAAAACGCACATCTCCGAG 59.871 52.381 0.00 0.00 0.00 4.63
746 749 1.798813 GAAAAACGCACATCTCCGAGT 59.201 47.619 0.00 0.00 0.00 4.18
747 750 2.736144 AAAACGCACATCTCCGAGTA 57.264 45.000 0.00 0.00 0.00 2.59
761 768 8.424918 ACATCTCCGAGTATATTGTCTCAAATT 58.575 33.333 0.00 0.00 0.00 1.82
765 772 9.400638 CTCCGAGTATATTGTCTCAAATTACTC 57.599 37.037 16.38 16.38 33.11 2.59
816 825 4.156739 GGCTGAAGATAACACTGAAAAGGG 59.843 45.833 0.00 0.00 0.00 3.95
819 828 6.348868 GCTGAAGATAACACTGAAAAGGGAAG 60.349 42.308 0.00 0.00 0.00 3.46
821 830 6.710744 TGAAGATAACACTGAAAAGGGAAGAC 59.289 38.462 0.00 0.00 0.00 3.01
832 841 9.147732 ACTGAAAAGGGAAGACAGATTTTATTT 57.852 29.630 0.00 0.00 33.53 1.40
840 849 9.841880 GGGAAGACAGATTTTATTTAGTTGTTC 57.158 33.333 0.00 0.00 0.00 3.18
856 865 1.301874 TTCACGGCCGAACGGAATT 60.302 52.632 35.90 2.60 38.39 2.17
857 866 1.570347 TTCACGGCCGAACGGAATTG 61.570 55.000 35.90 17.46 38.39 2.32
858 867 2.031465 ACGGCCGAACGGAATTGT 59.969 55.556 35.90 0.68 38.39 2.71
865 874 4.594136 GGCCGAACGGAATTGTAATAAAG 58.406 43.478 17.63 0.00 37.50 1.85
872 882 9.976255 CGAACGGAATTGTAATAAAGAATTGTA 57.024 29.630 0.00 0.00 31.55 2.41
921 1067 3.552890 CGATTGGTATTCAGCTCGATCCA 60.553 47.826 0.00 0.00 35.64 3.41
1035 1215 2.702751 AAACGTGCCACCGATCGACA 62.703 55.000 18.66 6.34 0.00 4.35
1235 1418 1.064357 GAAAAAGAAACACCGCCGACA 59.936 47.619 0.00 0.00 0.00 4.35
1251 1434 1.444119 GACAACAAGGGCACGAGCAA 61.444 55.000 7.26 0.00 44.61 3.91
1368 1557 4.172807 TCACTTTAATCACCTGGTACCCT 58.827 43.478 10.07 0.00 0.00 4.34
1369 1558 4.019681 TCACTTTAATCACCTGGTACCCTG 60.020 45.833 10.07 2.51 0.00 4.45
1370 1559 3.914435 ACTTTAATCACCTGGTACCCTGT 59.086 43.478 10.07 3.24 0.00 4.00
1371 1560 4.019591 ACTTTAATCACCTGGTACCCTGTC 60.020 45.833 10.07 0.00 0.00 3.51
1372 1561 2.038863 AATCACCTGGTACCCTGTCA 57.961 50.000 10.07 0.00 0.00 3.58
1373 1562 1.573108 ATCACCTGGTACCCTGTCAG 58.427 55.000 10.07 0.00 0.00 3.51
1429 1630 2.033602 TCGAGGTCGTGCTCTCCA 59.966 61.111 0.00 0.00 40.80 3.86
1487 1688 1.379642 GCCAAAGATCCTTCCGGCAG 61.380 60.000 0.00 0.00 39.38 4.85
1512 1716 4.019321 CCCTATGATCGGTGGGTATTCAAT 60.019 45.833 8.15 0.00 35.13 2.57
1544 1748 2.356313 CGACTCGCTGCAGTTGGT 60.356 61.111 16.64 11.14 0.00 3.67
1546 1750 2.281070 ACTCGCTGCAGTTGGTGG 60.281 61.111 16.64 2.94 0.00 4.61
1770 2446 3.329542 ATGGCGCCACTTCCGATGT 62.330 57.895 35.50 9.97 0.00 3.06
1818 2494 0.465460 GTTGCAAGTGGGAGGTGACA 60.465 55.000 0.00 0.00 0.00 3.58
1858 2538 2.698797 TGGTTCTTCAAGAAGACCGTCT 59.301 45.455 11.80 0.00 46.13 4.18
1864 2544 4.094590 TCTTCAAGAAGACCGTCTATCGAC 59.905 45.833 8.37 0.00 42.06 4.20
1941 2621 0.326264 ACTCATTCAGTCCACAGCCC 59.674 55.000 0.00 0.00 0.00 5.19
2286 3000 0.820074 AGTACGAGGAGGAGGATGCG 60.820 60.000 0.00 0.00 0.00 4.73
2340 3054 5.248705 AGGAACTACTCGGAAGGAAATTCTT 59.751 40.000 0.00 0.00 36.02 2.52
2485 3199 2.607635 GCCGAGAATGCGATGTTTCTTA 59.392 45.455 0.00 0.00 32.46 2.10
2495 3209 9.774742 GAATGCGATGTTTCTTAAAGAAATACT 57.225 29.630 0.00 0.00 44.94 2.12
2589 3303 2.160205 GAGTTAGGGGCCACAAGTTTC 58.840 52.381 8.31 0.00 0.00 2.78
2713 3430 0.609131 ACGGGAATTTGTGGCTGGAG 60.609 55.000 0.00 0.00 0.00 3.86
2779 3506 2.552599 TTGTAATCGCTTGTCCCACA 57.447 45.000 0.00 0.00 0.00 4.17
2795 3532 8.837099 TTGTCCCACATCTTATATTTGGAAAT 57.163 30.769 0.00 0.00 0.00 2.17
2806 3543 9.243637 TCTTATATTTGGAAATTGCGTATTTGC 57.756 29.630 8.15 8.15 42.86 3.68
2864 3605 7.485418 TTTGTTGTGATATTCTGTTACACGT 57.515 32.000 0.00 0.00 34.72 4.49
2916 3660 7.713073 TGGCATTTCATGTTATTACGACTATGA 59.287 33.333 0.00 0.00 0.00 2.15
2971 3716 5.662674 TCACTAGTAGAAAAGAGGGCTTC 57.337 43.478 3.59 0.00 31.82 3.86
2978 3723 1.535896 GAAAAGAGGGCTTCGGTTCAC 59.464 52.381 9.41 0.00 31.82 3.18
3376 4124 2.885676 CGATGAAATGCCCGAGCCG 61.886 63.158 0.00 0.00 38.69 5.52
3421 4169 1.448717 GCTCGACCTCAAAGCTCCC 60.449 63.158 0.00 0.00 33.23 4.30
3545 4293 5.483937 TGGTGAGCCTCTTGTTCTTATCTTA 59.516 40.000 0.00 0.00 35.27 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.386858 GATCTATTGCCGCGCTCGTA 60.387 55.000 5.56 0.00 0.00 3.43
6 7 1.127582 GATCTTGATCTATTGCCGCGC 59.872 52.381 0.00 0.00 0.00 6.86
7 8 1.388093 CGATCTTGATCTATTGCCGCG 59.612 52.381 0.00 0.00 0.00 6.46
8 9 1.728971 CCGATCTTGATCTATTGCCGC 59.271 52.381 8.70 0.00 0.00 6.53
9 10 1.728971 GCCGATCTTGATCTATTGCCG 59.271 52.381 8.70 0.00 0.00 5.69
10 11 2.079925 GGCCGATCTTGATCTATTGCC 58.920 52.381 8.70 10.34 0.00 4.52
11 12 1.728971 CGGCCGATCTTGATCTATTGC 59.271 52.381 24.07 6.08 0.00 3.56
12 13 2.733552 CACGGCCGATCTTGATCTATTG 59.266 50.000 35.90 11.02 0.00 1.90
13 14 2.868044 GCACGGCCGATCTTGATCTATT 60.868 50.000 35.90 0.00 0.00 1.73
14 15 1.337260 GCACGGCCGATCTTGATCTAT 60.337 52.381 35.90 0.00 0.00 1.98
15 16 0.032130 GCACGGCCGATCTTGATCTA 59.968 55.000 35.90 0.00 0.00 1.98
16 17 1.227380 GCACGGCCGATCTTGATCT 60.227 57.895 35.90 1.64 0.00 2.75
17 18 2.589492 CGCACGGCCGATCTTGATC 61.589 63.158 35.90 6.59 0.00 2.92
18 19 2.586079 CGCACGGCCGATCTTGAT 60.586 61.111 35.90 3.57 0.00 2.57
30 31 4.435436 TGGGTCTAGCAGCGCACG 62.435 66.667 11.47 0.01 0.00 5.34
31 32 2.510238 CTGGGTCTAGCAGCGCAC 60.510 66.667 11.47 0.00 0.00 5.34
32 33 4.457496 GCTGGGTCTAGCAGCGCA 62.457 66.667 11.47 2.67 43.17 6.09
38 39 0.175989 GGTGTAGTGCTGGGTCTAGC 59.824 60.000 0.00 0.00 43.95 3.42
39 40 0.824759 GGGTGTAGTGCTGGGTCTAG 59.175 60.000 0.00 0.00 0.00 2.43
40 41 0.412244 AGGGTGTAGTGCTGGGTCTA 59.588 55.000 0.00 0.00 0.00 2.59
41 42 0.412244 TAGGGTGTAGTGCTGGGTCT 59.588 55.000 0.00 0.00 0.00 3.85
42 43 1.497161 ATAGGGTGTAGTGCTGGGTC 58.503 55.000 0.00 0.00 0.00 4.46
43 44 2.860817 TATAGGGTGTAGTGCTGGGT 57.139 50.000 0.00 0.00 0.00 4.51
44 45 3.740141 CGTTTATAGGGTGTAGTGCTGGG 60.740 52.174 0.00 0.00 0.00 4.45
45 46 3.454375 CGTTTATAGGGTGTAGTGCTGG 58.546 50.000 0.00 0.00 0.00 4.85
46 47 3.118884 ACCGTTTATAGGGTGTAGTGCTG 60.119 47.826 0.00 0.00 40.89 4.41
47 48 3.102204 ACCGTTTATAGGGTGTAGTGCT 58.898 45.455 0.00 0.00 40.89 4.40
48 49 3.531934 ACCGTTTATAGGGTGTAGTGC 57.468 47.619 0.00 0.00 40.89 4.40
49 50 5.075858 TGAACCGTTTATAGGGTGTAGTG 57.924 43.478 0.00 0.00 41.55 2.74
50 51 4.161001 CCTGAACCGTTTATAGGGTGTAGT 59.839 45.833 0.00 0.00 41.55 2.73
51 52 4.690122 CCTGAACCGTTTATAGGGTGTAG 58.310 47.826 0.00 1.29 41.55 2.74
52 53 3.118665 GCCTGAACCGTTTATAGGGTGTA 60.119 47.826 0.00 0.00 41.55 2.90
53 54 2.355412 GCCTGAACCGTTTATAGGGTGT 60.355 50.000 0.00 0.00 41.55 4.16
54 55 2.093128 AGCCTGAACCGTTTATAGGGTG 60.093 50.000 11.67 0.00 41.55 4.61
55 56 2.169978 GAGCCTGAACCGTTTATAGGGT 59.830 50.000 12.08 12.08 44.19 4.34
56 57 2.802057 CGAGCCTGAACCGTTTATAGGG 60.802 54.545 10.41 0.00 35.40 3.53
57 58 2.470821 CGAGCCTGAACCGTTTATAGG 58.529 52.381 6.03 6.03 0.00 2.57
58 59 1.859080 GCGAGCCTGAACCGTTTATAG 59.141 52.381 0.00 0.00 0.00 1.31
59 60 1.479323 AGCGAGCCTGAACCGTTTATA 59.521 47.619 0.00 0.00 0.00 0.98
60 61 0.249398 AGCGAGCCTGAACCGTTTAT 59.751 50.000 0.00 0.00 0.00 1.40
61 62 0.889994 TAGCGAGCCTGAACCGTTTA 59.110 50.000 0.00 0.00 0.00 2.01
62 63 0.389948 CTAGCGAGCCTGAACCGTTT 60.390 55.000 0.00 0.00 0.00 3.60
63 64 1.215647 CTAGCGAGCCTGAACCGTT 59.784 57.895 0.00 0.00 0.00 4.44
64 65 2.711922 CCTAGCGAGCCTGAACCGT 61.712 63.158 0.00 0.00 0.00 4.83
65 66 2.105128 CCTAGCGAGCCTGAACCG 59.895 66.667 0.00 0.00 0.00 4.44
66 67 0.036294 AAACCTAGCGAGCCTGAACC 60.036 55.000 0.00 0.00 0.00 3.62
67 68 1.464997 CAAAACCTAGCGAGCCTGAAC 59.535 52.381 0.00 0.00 0.00 3.18
68 69 1.071699 ACAAAACCTAGCGAGCCTGAA 59.928 47.619 0.00 0.00 0.00 3.02
69 70 0.685097 ACAAAACCTAGCGAGCCTGA 59.315 50.000 0.00 0.00 0.00 3.86
70 71 1.079503 GACAAAACCTAGCGAGCCTG 58.920 55.000 0.00 0.00 0.00 4.85
71 72 0.389948 CGACAAAACCTAGCGAGCCT 60.390 55.000 0.00 0.00 0.00 4.58
72 73 0.669625 ACGACAAAACCTAGCGAGCC 60.670 55.000 0.00 0.00 0.00 4.70
73 74 1.126296 GAACGACAAAACCTAGCGAGC 59.874 52.381 0.00 0.00 0.00 5.03
74 75 1.725164 GGAACGACAAAACCTAGCGAG 59.275 52.381 0.00 0.00 0.00 5.03
75 76 1.606224 GGGAACGACAAAACCTAGCGA 60.606 52.381 0.00 0.00 0.00 4.93
76 77 0.794473 GGGAACGACAAAACCTAGCG 59.206 55.000 0.00 0.00 0.00 4.26
77 78 1.804748 CAGGGAACGACAAAACCTAGC 59.195 52.381 0.00 0.00 0.00 3.42
78 79 2.038033 TCCAGGGAACGACAAAACCTAG 59.962 50.000 0.00 0.00 0.00 3.02
79 80 2.048601 TCCAGGGAACGACAAAACCTA 58.951 47.619 0.00 0.00 0.00 3.08
80 81 0.841289 TCCAGGGAACGACAAAACCT 59.159 50.000 0.00 0.00 0.00 3.50
81 82 1.905637 ATCCAGGGAACGACAAAACC 58.094 50.000 0.00 0.00 0.00 3.27
82 83 4.316205 AAAATCCAGGGAACGACAAAAC 57.684 40.909 0.00 0.00 0.00 2.43
105 106 1.670791 AAGAACTCGCCGGACAAAAA 58.329 45.000 5.05 0.00 0.00 1.94
106 107 1.670791 AAAGAACTCGCCGGACAAAA 58.329 45.000 5.05 0.00 0.00 2.44
107 108 1.670791 AAAAGAACTCGCCGGACAAA 58.329 45.000 5.05 0.00 0.00 2.83
108 109 1.600485 GAAAAAGAACTCGCCGGACAA 59.400 47.619 5.05 0.00 0.00 3.18
109 110 1.202604 AGAAAAAGAACTCGCCGGACA 60.203 47.619 5.05 0.00 0.00 4.02
110 111 1.509703 AGAAAAAGAACTCGCCGGAC 58.490 50.000 5.05 0.00 0.00 4.79
111 112 2.249844 AAGAAAAAGAACTCGCCGGA 57.750 45.000 5.05 0.00 0.00 5.14
112 113 3.297472 GAAAAGAAAAAGAACTCGCCGG 58.703 45.455 0.00 0.00 0.00 6.13
113 114 3.297472 GGAAAAGAAAAAGAACTCGCCG 58.703 45.455 0.00 0.00 0.00 6.46
114 115 3.297472 CGGAAAAGAAAAAGAACTCGCC 58.703 45.455 0.00 0.00 0.00 5.54
115 116 3.242969 ACCGGAAAAGAAAAAGAACTCGC 60.243 43.478 9.46 0.00 0.00 5.03
116 117 4.279659 CACCGGAAAAGAAAAAGAACTCG 58.720 43.478 9.46 0.00 0.00 4.18
117 118 4.042398 GCACCGGAAAAGAAAAAGAACTC 58.958 43.478 9.46 0.00 0.00 3.01
118 119 3.445805 TGCACCGGAAAAGAAAAAGAACT 59.554 39.130 9.46 0.00 0.00 3.01
119 120 3.550275 GTGCACCGGAAAAGAAAAAGAAC 59.450 43.478 9.46 0.00 0.00 3.01
120 121 3.193691 TGTGCACCGGAAAAGAAAAAGAA 59.806 39.130 15.69 0.00 0.00 2.52
121 122 2.755655 TGTGCACCGGAAAAGAAAAAGA 59.244 40.909 15.69 0.00 0.00 2.52
122 123 3.157932 TGTGCACCGGAAAAGAAAAAG 57.842 42.857 15.69 0.00 0.00 2.27
123 124 3.193691 TCTTGTGCACCGGAAAAGAAAAA 59.806 39.130 15.69 0.00 0.00 1.94
124 125 2.755655 TCTTGTGCACCGGAAAAGAAAA 59.244 40.909 15.69 0.00 0.00 2.29
125 126 2.370349 TCTTGTGCACCGGAAAAGAAA 58.630 42.857 15.69 0.00 0.00 2.52
126 127 2.045561 TCTTGTGCACCGGAAAAGAA 57.954 45.000 15.69 0.00 0.00 2.52
127 128 1.879380 CATCTTGTGCACCGGAAAAGA 59.121 47.619 15.69 16.01 0.00 2.52
128 129 1.068333 CCATCTTGTGCACCGGAAAAG 60.068 52.381 15.69 10.87 0.00 2.27
129 130 0.958091 CCATCTTGTGCACCGGAAAA 59.042 50.000 15.69 0.00 0.00 2.29
130 131 0.179004 ACCATCTTGTGCACCGGAAA 60.179 50.000 15.69 0.17 0.00 3.13
131 132 0.888736 CACCATCTTGTGCACCGGAA 60.889 55.000 15.69 0.58 0.00 4.30
132 133 1.302431 CACCATCTTGTGCACCGGA 60.302 57.895 15.69 12.66 0.00 5.14
133 134 1.302431 TCACCATCTTGTGCACCGG 60.302 57.895 15.69 0.00 36.17 5.28
134 135 1.577328 GGTCACCATCTTGTGCACCG 61.577 60.000 15.69 5.59 36.17 4.94
135 136 1.577328 CGGTCACCATCTTGTGCACC 61.577 60.000 15.69 0.00 36.17 5.01
136 137 0.884704 ACGGTCACCATCTTGTGCAC 60.885 55.000 10.75 10.75 36.17 4.57
137 138 0.884259 CACGGTCACCATCTTGTGCA 60.884 55.000 0.00 0.00 36.17 4.57
138 139 0.884704 ACACGGTCACCATCTTGTGC 60.885 55.000 0.00 0.00 36.17 4.57
139 140 0.867746 CACACGGTCACCATCTTGTG 59.132 55.000 0.00 0.00 37.59 3.33
140 141 0.468226 ACACACGGTCACCATCTTGT 59.532 50.000 0.00 0.00 0.00 3.16
141 142 1.148310 GACACACGGTCACCATCTTG 58.852 55.000 0.00 0.00 46.19 3.02
142 143 3.606886 GACACACGGTCACCATCTT 57.393 52.632 0.00 0.00 46.19 2.40
151 152 2.668212 CCGCCAATGACACACGGT 60.668 61.111 0.00 0.00 39.05 4.83
152 153 4.101790 GCCGCCAATGACACACGG 62.102 66.667 0.00 0.00 46.50 4.94
153 154 4.101790 GGCCGCCAATGACACACG 62.102 66.667 3.91 0.00 0.00 4.49
154 155 2.983030 TGGCCGCCAATGACACAC 60.983 61.111 10.50 0.00 0.00 3.82
155 156 2.983030 GTGGCCGCCAATGACACA 60.983 61.111 15.39 0.00 34.18 3.72
156 157 3.747976 GGTGGCCGCCAATGACAC 61.748 66.667 30.93 2.56 34.18 3.67
157 158 3.965258 AGGTGGCCGCCAATGACA 61.965 61.111 36.17 0.00 34.18 3.58
158 159 3.443045 CAGGTGGCCGCCAATGAC 61.443 66.667 36.17 8.47 34.18 3.06
170 171 8.378509 GATTTTAATCATGTCCTCCGCAGGTG 62.379 46.154 0.00 0.00 41.41 4.00
171 172 6.434172 GATTTTAATCATGTCCTCCGCAGGT 61.434 44.000 0.00 0.00 41.41 4.00
172 173 4.023707 GATTTTAATCATGTCCTCCGCAGG 60.024 45.833 0.00 0.00 41.80 4.85
173 174 4.576053 TGATTTTAATCATGTCCTCCGCAG 59.424 41.667 1.12 0.00 40.32 5.18
174 175 4.522114 TGATTTTAATCATGTCCTCCGCA 58.478 39.130 1.12 0.00 40.32 5.69
175 176 5.273944 GTTGATTTTAATCATGTCCTCCGC 58.726 41.667 6.03 0.00 44.27 5.54
176 177 5.590259 AGGTTGATTTTAATCATGTCCTCCG 59.410 40.000 6.03 0.00 44.27 4.63
177 178 7.993183 TCTAGGTTGATTTTAATCATGTCCTCC 59.007 37.037 18.52 10.50 44.27 4.30
178 179 8.964476 TCTAGGTTGATTTTAATCATGTCCTC 57.036 34.615 18.52 4.64 44.27 3.71
179 180 9.927081 AATCTAGGTTGATTTTAATCATGTCCT 57.073 29.630 18.76 18.76 44.27 3.85
180 181 9.956720 CAATCTAGGTTGATTTTAATCATGTCC 57.043 33.333 10.40 8.98 44.27 4.02
194 195 7.256190 CCGGTATAAAGGATCAATCTAGGTTGA 60.256 40.741 20.43 20.43 41.88 3.18
195 196 6.874134 CCGGTATAAAGGATCAATCTAGGTTG 59.126 42.308 9.62 9.62 0.00 3.77
196 197 6.013639 CCCGGTATAAAGGATCAATCTAGGTT 60.014 42.308 0.00 0.00 0.00 3.50
197 198 5.484290 CCCGGTATAAAGGATCAATCTAGGT 59.516 44.000 0.00 0.00 0.00 3.08
198 199 5.484290 ACCCGGTATAAAGGATCAATCTAGG 59.516 44.000 0.00 0.00 0.00 3.02
199 200 6.210784 TCACCCGGTATAAAGGATCAATCTAG 59.789 42.308 0.00 0.00 0.00 2.43
200 201 6.079336 TCACCCGGTATAAAGGATCAATCTA 58.921 40.000 0.00 0.00 0.00 1.98
201 202 4.905456 TCACCCGGTATAAAGGATCAATCT 59.095 41.667 0.00 0.00 0.00 2.40
202 203 5.221661 ACTCACCCGGTATAAAGGATCAATC 60.222 44.000 0.00 0.00 0.00 2.67
203 204 4.658901 ACTCACCCGGTATAAAGGATCAAT 59.341 41.667 0.00 0.00 0.00 2.57
204 205 4.035112 ACTCACCCGGTATAAAGGATCAA 58.965 43.478 0.00 0.00 0.00 2.57
205 206 3.640029 GACTCACCCGGTATAAAGGATCA 59.360 47.826 0.00 0.00 0.00 2.92
206 207 3.896272 AGACTCACCCGGTATAAAGGATC 59.104 47.826 0.00 0.00 0.00 3.36
207 208 3.896272 GAGACTCACCCGGTATAAAGGAT 59.104 47.826 0.00 0.00 0.00 3.24
208 209 3.294214 GAGACTCACCCGGTATAAAGGA 58.706 50.000 0.00 0.00 0.00 3.36
209 210 3.028850 TGAGACTCACCCGGTATAAAGG 58.971 50.000 0.00 0.00 0.00 3.11
210 211 4.621991 CATGAGACTCACCCGGTATAAAG 58.378 47.826 7.47 0.00 0.00 1.85
211 212 3.181469 GCATGAGACTCACCCGGTATAAA 60.181 47.826 7.47 0.00 0.00 1.40
212 213 2.364324 GCATGAGACTCACCCGGTATAA 59.636 50.000 7.47 0.00 0.00 0.98
213 214 1.961394 GCATGAGACTCACCCGGTATA 59.039 52.381 7.47 0.00 0.00 1.47
214 215 0.753262 GCATGAGACTCACCCGGTAT 59.247 55.000 7.47 0.00 0.00 2.73
215 216 0.324368 AGCATGAGACTCACCCGGTA 60.324 55.000 7.47 0.00 0.00 4.02
216 217 1.610673 AGCATGAGACTCACCCGGT 60.611 57.895 7.47 2.31 0.00 5.28
217 218 1.153489 CAGCATGAGACTCACCCGG 60.153 63.158 7.47 0.00 39.69 5.73
218 219 1.153489 CCAGCATGAGACTCACCCG 60.153 63.158 7.47 0.57 39.69 5.28
219 220 0.835941 ATCCAGCATGAGACTCACCC 59.164 55.000 7.47 1.59 39.69 4.61
220 221 2.286872 CAATCCAGCATGAGACTCACC 58.713 52.381 7.47 1.98 39.69 4.02
221 222 2.286872 CCAATCCAGCATGAGACTCAC 58.713 52.381 7.47 0.00 39.69 3.51
222 223 1.407851 GCCAATCCAGCATGAGACTCA 60.408 52.381 7.80 7.80 39.69 3.41
223 224 1.307097 GCCAATCCAGCATGAGACTC 58.693 55.000 0.00 0.00 39.69 3.36
224 225 0.463295 CGCCAATCCAGCATGAGACT 60.463 55.000 0.00 0.00 39.69 3.24
225 226 1.442526 CCGCCAATCCAGCATGAGAC 61.443 60.000 0.00 0.00 39.69 3.36
226 227 1.153107 CCGCCAATCCAGCATGAGA 60.153 57.895 0.00 0.00 39.69 3.27
227 228 2.191513 CCCGCCAATCCAGCATGAG 61.192 63.158 0.00 0.00 39.69 2.90
228 229 2.124193 CCCGCCAATCCAGCATGA 60.124 61.111 0.00 0.00 39.69 3.07
229 230 3.908081 GCCCGCCAATCCAGCATG 61.908 66.667 0.00 0.00 0.00 4.06
258 259 2.203509 ATCCGGAGACCTAGCCCG 60.204 66.667 11.34 0.00 42.64 6.13
259 260 2.210711 CCATCCGGAGACCTAGCCC 61.211 68.421 11.34 0.00 0.00 5.19
260 261 2.873525 GCCATCCGGAGACCTAGCC 61.874 68.421 11.34 0.00 0.00 3.93
261 262 1.403687 AAGCCATCCGGAGACCTAGC 61.404 60.000 11.34 6.17 0.00 3.42
262 263 1.996798 TAAGCCATCCGGAGACCTAG 58.003 55.000 11.34 0.00 0.00 3.02
263 264 2.464796 TTAAGCCATCCGGAGACCTA 57.535 50.000 11.34 0.00 0.00 3.08
264 265 1.807814 ATTAAGCCATCCGGAGACCT 58.192 50.000 11.34 2.14 0.00 3.85
265 266 2.222027 CAATTAAGCCATCCGGAGACC 58.778 52.381 11.34 0.00 0.00 3.85
266 267 2.614057 CACAATTAAGCCATCCGGAGAC 59.386 50.000 11.34 1.00 0.00 3.36
267 268 2.238646 ACACAATTAAGCCATCCGGAGA 59.761 45.455 11.34 0.00 0.00 3.71
268 269 2.355756 CACACAATTAAGCCATCCGGAG 59.644 50.000 11.34 0.00 0.00 4.63
269 270 2.290641 ACACACAATTAAGCCATCCGGA 60.291 45.455 6.61 6.61 0.00 5.14
270 271 2.091541 ACACACAATTAAGCCATCCGG 58.908 47.619 0.00 0.00 0.00 5.14
271 272 2.731968 GCACACACAATTAAGCCATCCG 60.732 50.000 0.00 0.00 0.00 4.18
272 273 2.417243 GGCACACACAATTAAGCCATCC 60.417 50.000 0.00 0.00 41.63 3.51
273 274 2.417243 GGGCACACACAATTAAGCCATC 60.417 50.000 0.00 0.00 43.72 3.51
274 275 1.550072 GGGCACACACAATTAAGCCAT 59.450 47.619 0.00 0.00 43.72 4.40
275 276 0.965439 GGGCACACACAATTAAGCCA 59.035 50.000 0.00 0.00 43.72 4.75
276 277 0.109319 CGGGCACACACAATTAAGCC 60.109 55.000 0.00 0.00 41.29 4.35
277 278 0.109319 CCGGGCACACACAATTAAGC 60.109 55.000 0.00 0.00 0.00 3.09
278 279 0.525761 CCCGGGCACACACAATTAAG 59.474 55.000 8.08 0.00 0.00 1.85
279 280 1.528292 GCCCGGGCACACACAATTAA 61.528 55.000 40.73 0.00 41.49 1.40
280 281 1.974343 GCCCGGGCACACACAATTA 60.974 57.895 40.73 0.00 41.49 1.40
281 282 3.302344 GCCCGGGCACACACAATT 61.302 61.111 40.73 0.00 41.49 2.32
294 295 4.227134 CTCCTGATGACCGGCCCG 62.227 72.222 0.00 0.00 0.00 6.13
295 296 1.700042 ATTCTCCTGATGACCGGCCC 61.700 60.000 0.00 0.00 0.00 5.80
296 297 1.048601 TATTCTCCTGATGACCGGCC 58.951 55.000 0.00 0.00 0.00 6.13
297 298 2.672478 CGATATTCTCCTGATGACCGGC 60.672 54.545 0.00 0.00 0.00 6.13
298 299 2.820197 TCGATATTCTCCTGATGACCGG 59.180 50.000 0.00 0.00 0.00 5.28
299 300 3.119673 CCTCGATATTCTCCTGATGACCG 60.120 52.174 0.00 0.00 0.00 4.79
300 301 4.082463 GTCCTCGATATTCTCCTGATGACC 60.082 50.000 0.00 0.00 0.00 4.02
301 302 4.378978 CGTCCTCGATATTCTCCTGATGAC 60.379 50.000 0.00 0.00 39.71 3.06
302 303 3.753797 CGTCCTCGATATTCTCCTGATGA 59.246 47.826 0.00 0.00 39.71 2.92
303 304 3.671971 GCGTCCTCGATATTCTCCTGATG 60.672 52.174 0.00 0.00 39.71 3.07
304 305 2.490115 GCGTCCTCGATATTCTCCTGAT 59.510 50.000 0.00 0.00 39.71 2.90
305 306 1.880675 GCGTCCTCGATATTCTCCTGA 59.119 52.381 0.00 0.00 39.71 3.86
306 307 1.609072 TGCGTCCTCGATATTCTCCTG 59.391 52.381 0.00 0.00 39.71 3.86
307 308 1.982660 TGCGTCCTCGATATTCTCCT 58.017 50.000 0.00 0.00 39.71 3.69
308 309 3.246619 GAATGCGTCCTCGATATTCTCC 58.753 50.000 0.00 0.00 38.20 3.71
309 310 2.911723 CGAATGCGTCCTCGATATTCTC 59.088 50.000 0.00 0.00 38.61 2.87
310 311 2.922758 GCGAATGCGTCCTCGATATTCT 60.923 50.000 4.22 0.00 38.61 2.40
311 312 1.387084 GCGAATGCGTCCTCGATATTC 59.613 52.381 4.22 0.00 40.36 1.75
312 313 1.419374 GCGAATGCGTCCTCGATATT 58.581 50.000 4.22 0.00 40.36 1.28
313 314 3.108521 GCGAATGCGTCCTCGATAT 57.891 52.632 4.22 0.00 40.36 1.63
314 315 4.628160 GCGAATGCGTCCTCGATA 57.372 55.556 4.22 0.00 40.36 2.92
323 324 3.729906 GGCTTCAGCTGCGAATGCG 62.730 63.158 9.47 0.00 40.31 4.73
324 325 2.101770 GGCTTCAGCTGCGAATGC 59.898 61.111 9.47 6.03 41.70 3.56
325 326 1.303799 ACAGGCTTCAGCTGCGAATG 61.304 55.000 9.47 6.53 41.70 2.67
326 327 1.002868 ACAGGCTTCAGCTGCGAAT 60.003 52.632 9.47 0.00 41.70 3.34
327 328 1.962822 CACAGGCTTCAGCTGCGAA 60.963 57.895 9.47 0.00 41.70 4.70
328 329 2.357881 CACAGGCTTCAGCTGCGA 60.358 61.111 9.47 0.00 41.70 5.10
329 330 2.667536 ACACAGGCTTCAGCTGCG 60.668 61.111 9.47 3.45 41.70 5.18
330 331 0.959372 ATGACACAGGCTTCAGCTGC 60.959 55.000 9.47 0.00 41.70 5.25
331 332 0.803117 CATGACACAGGCTTCAGCTG 59.197 55.000 7.63 7.63 41.70 4.24
332 333 0.399454 ACATGACACAGGCTTCAGCT 59.601 50.000 0.00 0.00 41.70 4.24
333 334 0.801251 GACATGACACAGGCTTCAGC 59.199 55.000 0.00 0.00 41.14 4.26
334 335 1.802960 GTGACATGACACAGGCTTCAG 59.197 52.381 21.00 0.00 40.11 3.02
335 336 1.140652 TGTGACATGACACAGGCTTCA 59.859 47.619 23.97 2.95 44.29 3.02
336 337 1.882912 TGTGACATGACACAGGCTTC 58.117 50.000 23.97 0.35 44.29 3.86
353 354 3.010734 GCAGCAACTGTGACAGCATGT 62.011 52.381 13.37 1.12 43.16 3.21
354 355 0.386858 GCAGCAACTGTGACAGCATG 60.387 55.000 13.37 13.09 36.43 4.06
355 356 0.536687 AGCAGCAACTGTGACAGCAT 60.537 50.000 13.37 0.00 34.37 3.79
356 357 1.153107 AGCAGCAACTGTGACAGCA 60.153 52.632 13.37 0.00 34.37 4.41
357 358 1.162181 TCAGCAGCAACTGTGACAGC 61.162 55.000 13.37 0.00 38.84 4.40
358 359 1.463831 GATCAGCAGCAACTGTGACAG 59.536 52.381 11.70 11.70 38.84 3.51
359 360 1.516161 GATCAGCAGCAACTGTGACA 58.484 50.000 0.00 0.00 38.84 3.58
360 361 0.801251 GGATCAGCAGCAACTGTGAC 59.199 55.000 0.00 0.50 38.84 3.67
361 362 0.397564 TGGATCAGCAGCAACTGTGA 59.602 50.000 0.00 0.00 38.84 3.58
362 363 0.803117 CTGGATCAGCAGCAACTGTG 59.197 55.000 0.00 0.00 38.84 3.66
363 364 0.322277 CCTGGATCAGCAGCAACTGT 60.322 55.000 0.00 0.00 38.84 3.55
364 365 1.030488 CCCTGGATCAGCAGCAACTG 61.030 60.000 0.00 0.00 39.12 3.16
365 366 1.203441 TCCCTGGATCAGCAGCAACT 61.203 55.000 0.00 0.00 0.00 3.16
366 367 0.106819 ATCCCTGGATCAGCAGCAAC 60.107 55.000 0.00 0.00 0.00 4.17
367 368 0.106868 CATCCCTGGATCAGCAGCAA 60.107 55.000 0.00 0.00 31.62 3.91
368 369 0.984432 TCATCCCTGGATCAGCAGCA 60.984 55.000 0.00 0.00 31.62 4.41
369 370 0.400975 ATCATCCCTGGATCAGCAGC 59.599 55.000 0.00 0.00 31.62 5.25
370 371 3.307550 CCTTATCATCCCTGGATCAGCAG 60.308 52.174 0.00 0.00 31.62 4.24
371 372 2.641321 CCTTATCATCCCTGGATCAGCA 59.359 50.000 0.00 0.00 31.62 4.41
372 373 2.026449 CCCTTATCATCCCTGGATCAGC 60.026 54.545 0.00 0.00 31.62 4.26
373 374 3.008813 CACCCTTATCATCCCTGGATCAG 59.991 52.174 0.00 0.00 31.62 2.90
374 375 2.981784 CACCCTTATCATCCCTGGATCA 59.018 50.000 0.00 0.00 31.62 2.92
375 376 2.307098 CCACCCTTATCATCCCTGGATC 59.693 54.545 0.00 0.00 31.62 3.36
376 377 2.352371 CCACCCTTATCATCCCTGGAT 58.648 52.381 0.00 0.00 34.81 3.41
377 378 1.010793 ACCACCCTTATCATCCCTGGA 59.989 52.381 0.00 0.00 0.00 3.86
378 379 1.421646 GACCACCCTTATCATCCCTGG 59.578 57.143 0.00 0.00 0.00 4.45
379 380 2.412591 AGACCACCCTTATCATCCCTG 58.587 52.381 0.00 0.00 0.00 4.45
380 381 2.897823 AGACCACCCTTATCATCCCT 57.102 50.000 0.00 0.00 0.00 4.20
381 382 3.202151 TCAAAGACCACCCTTATCATCCC 59.798 47.826 0.00 0.00 0.00 3.85
382 383 4.164221 TCTCAAAGACCACCCTTATCATCC 59.836 45.833 0.00 0.00 0.00 3.51
383 384 5.119694 GTCTCAAAGACCACCCTTATCATC 58.880 45.833 0.00 0.00 39.28 2.92
384 385 4.383118 CGTCTCAAAGACCACCCTTATCAT 60.383 45.833 1.69 0.00 42.12 2.45
385 386 3.056107 CGTCTCAAAGACCACCCTTATCA 60.056 47.826 1.69 0.00 42.12 2.15
386 387 3.522553 CGTCTCAAAGACCACCCTTATC 58.477 50.000 1.69 0.00 42.12 1.75
387 388 2.236395 CCGTCTCAAAGACCACCCTTAT 59.764 50.000 1.69 0.00 42.12 1.73
388 389 1.621814 CCGTCTCAAAGACCACCCTTA 59.378 52.381 1.69 0.00 42.12 2.69
389 390 0.396811 CCGTCTCAAAGACCACCCTT 59.603 55.000 1.69 0.00 42.12 3.95
390 391 0.471211 TCCGTCTCAAAGACCACCCT 60.471 55.000 1.69 0.00 42.12 4.34
391 392 0.320508 GTCCGTCTCAAAGACCACCC 60.321 60.000 1.69 0.00 42.12 4.61
392 393 0.680061 AGTCCGTCTCAAAGACCACC 59.320 55.000 1.69 0.00 42.12 4.61
393 394 2.067414 GAGTCCGTCTCAAAGACCAC 57.933 55.000 1.69 0.00 42.12 4.16
402 403 0.885196 AGAAGCTGTGAGTCCGTCTC 59.115 55.000 0.00 0.00 43.03 3.36
403 404 0.885196 GAGAAGCTGTGAGTCCGTCT 59.115 55.000 0.00 0.00 0.00 4.18
404 405 0.109039 GGAGAAGCTGTGAGTCCGTC 60.109 60.000 0.00 0.00 0.00 4.79
405 406 0.827925 TGGAGAAGCTGTGAGTCCGT 60.828 55.000 0.00 0.00 0.00 4.69
406 407 0.108898 CTGGAGAAGCTGTGAGTCCG 60.109 60.000 0.00 0.00 0.00 4.79
407 408 0.248843 CCTGGAGAAGCTGTGAGTCC 59.751 60.000 0.00 0.00 0.00 3.85
408 409 1.261480 TCCTGGAGAAGCTGTGAGTC 58.739 55.000 0.00 0.00 0.00 3.36
409 410 1.622811 CTTCCTGGAGAAGCTGTGAGT 59.377 52.381 0.00 0.00 45.38 3.41
410 411 2.383368 CTTCCTGGAGAAGCTGTGAG 57.617 55.000 0.00 0.00 45.38 3.51
418 419 4.647564 AATTCAAGAGCTTCCTGGAGAA 57.352 40.909 0.00 0.00 0.00 2.87
419 420 4.383552 GCTAATTCAAGAGCTTCCTGGAGA 60.384 45.833 0.00 0.00 35.73 3.71
420 421 3.876320 GCTAATTCAAGAGCTTCCTGGAG 59.124 47.826 0.00 0.00 35.73 3.86
421 422 3.679917 CGCTAATTCAAGAGCTTCCTGGA 60.680 47.826 0.00 0.00 36.50 3.86
422 423 2.611292 CGCTAATTCAAGAGCTTCCTGG 59.389 50.000 0.00 0.00 36.50 4.45
423 424 3.525537 TCGCTAATTCAAGAGCTTCCTG 58.474 45.455 0.00 0.00 36.50 3.86
424 425 3.895232 TCGCTAATTCAAGAGCTTCCT 57.105 42.857 0.00 0.00 36.50 3.36
425 426 6.348050 CCATATTCGCTAATTCAAGAGCTTCC 60.348 42.308 0.00 0.00 36.50 3.46
426 427 6.348050 CCCATATTCGCTAATTCAAGAGCTTC 60.348 42.308 0.00 0.00 36.50 3.86
427 428 5.471456 CCCATATTCGCTAATTCAAGAGCTT 59.529 40.000 0.00 0.00 36.50 3.74
428 429 4.999950 CCCATATTCGCTAATTCAAGAGCT 59.000 41.667 0.00 0.00 36.50 4.09
429 430 4.757149 ACCCATATTCGCTAATTCAAGAGC 59.243 41.667 0.00 0.00 35.24 4.09
430 431 5.119279 CGACCCATATTCGCTAATTCAAGAG 59.881 44.000 0.00 0.00 0.00 2.85
431 432 4.988540 CGACCCATATTCGCTAATTCAAGA 59.011 41.667 0.00 0.00 0.00 3.02
432 433 5.269459 CGACCCATATTCGCTAATTCAAG 57.731 43.478 0.00 0.00 0.00 3.02
442 443 2.157668 GCATACAAGCGACCCATATTCG 59.842 50.000 0.00 0.00 39.56 3.34
443 444 3.403038 AGCATACAAGCGACCCATATTC 58.597 45.455 0.00 0.00 40.15 1.75
444 445 3.403038 GAGCATACAAGCGACCCATATT 58.597 45.455 0.00 0.00 40.15 1.28
445 446 2.289694 GGAGCATACAAGCGACCCATAT 60.290 50.000 0.00 0.00 40.15 1.78
446 447 1.070134 GGAGCATACAAGCGACCCATA 59.930 52.381 0.00 0.00 40.15 2.74
447 448 0.179045 GGAGCATACAAGCGACCCAT 60.179 55.000 0.00 0.00 40.15 4.00
448 449 1.220749 GGAGCATACAAGCGACCCA 59.779 57.895 0.00 0.00 40.15 4.51
449 450 1.883084 CGGAGCATACAAGCGACCC 60.883 63.158 0.00 0.00 40.15 4.46
450 451 0.459585 TTCGGAGCATACAAGCGACC 60.460 55.000 0.00 0.00 40.15 4.79
451 452 0.645868 GTTCGGAGCATACAAGCGAC 59.354 55.000 0.00 0.00 40.15 5.19
452 453 0.530744 AGTTCGGAGCATACAAGCGA 59.469 50.000 0.00 0.00 40.15 4.93
453 454 1.852895 GTAGTTCGGAGCATACAAGCG 59.147 52.381 0.00 0.00 40.15 4.68
454 455 3.166489 AGTAGTTCGGAGCATACAAGC 57.834 47.619 0.00 0.00 0.00 4.01
455 456 5.687730 CACATAGTAGTTCGGAGCATACAAG 59.312 44.000 0.00 0.00 0.00 3.16
456 457 5.451381 CCACATAGTAGTTCGGAGCATACAA 60.451 44.000 0.00 0.00 0.00 2.41
457 458 4.037565 CCACATAGTAGTTCGGAGCATACA 59.962 45.833 0.00 0.00 0.00 2.29
458 459 4.277672 TCCACATAGTAGTTCGGAGCATAC 59.722 45.833 0.00 0.00 0.00 2.39
459 460 4.466827 TCCACATAGTAGTTCGGAGCATA 58.533 43.478 0.00 0.00 0.00 3.14
460 461 3.296854 TCCACATAGTAGTTCGGAGCAT 58.703 45.455 0.00 0.00 0.00 3.79
461 462 2.730382 TCCACATAGTAGTTCGGAGCA 58.270 47.619 0.00 0.00 0.00 4.26
462 463 3.795623 TTCCACATAGTAGTTCGGAGC 57.204 47.619 0.00 0.00 0.00 4.70
463 464 4.501571 CCCATTCCACATAGTAGTTCGGAG 60.502 50.000 0.00 0.00 0.00 4.63
464 465 3.386726 CCCATTCCACATAGTAGTTCGGA 59.613 47.826 0.00 0.00 0.00 4.55
465 466 3.386726 TCCCATTCCACATAGTAGTTCGG 59.613 47.826 0.00 0.00 0.00 4.30
466 467 4.099573 ACTCCCATTCCACATAGTAGTTCG 59.900 45.833 0.00 0.00 0.00 3.95
467 468 5.602628 GACTCCCATTCCACATAGTAGTTC 58.397 45.833 0.00 0.00 0.00 3.01
468 469 4.099573 CGACTCCCATTCCACATAGTAGTT 59.900 45.833 0.00 0.00 0.00 2.24
469 470 3.637229 CGACTCCCATTCCACATAGTAGT 59.363 47.826 0.00 0.00 0.00 2.73
470 471 3.005897 CCGACTCCCATTCCACATAGTAG 59.994 52.174 0.00 0.00 0.00 2.57
471 472 2.963101 CCGACTCCCATTCCACATAGTA 59.037 50.000 0.00 0.00 0.00 1.82
472 473 1.762957 CCGACTCCCATTCCACATAGT 59.237 52.381 0.00 0.00 0.00 2.12
473 474 2.039418 TCCGACTCCCATTCCACATAG 58.961 52.381 0.00 0.00 0.00 2.23
474 475 2.168458 TCCGACTCCCATTCCACATA 57.832 50.000 0.00 0.00 0.00 2.29
475 476 1.141657 CATCCGACTCCCATTCCACAT 59.858 52.381 0.00 0.00 0.00 3.21
476 477 0.541392 CATCCGACTCCCATTCCACA 59.459 55.000 0.00 0.00 0.00 4.17
477 478 0.541863 ACATCCGACTCCCATTCCAC 59.458 55.000 0.00 0.00 0.00 4.02
478 479 0.830648 GACATCCGACTCCCATTCCA 59.169 55.000 0.00 0.00 0.00 3.53
479 480 0.106894 GGACATCCGACTCCCATTCC 59.893 60.000 0.00 0.00 0.00 3.01
480 481 0.106894 GGGACATCCGACTCCCATTC 59.893 60.000 7.80 0.00 45.22 2.67
481 482 2.221918 GGGACATCCGACTCCCATT 58.778 57.895 7.80 0.00 45.22 3.16
482 483 3.971894 GGGACATCCGACTCCCAT 58.028 61.111 7.80 0.00 45.22 4.00
491 492 3.809013 ACATGGGCCGGGACATCC 61.809 66.667 2.18 0.00 0.00 3.51
492 493 2.516930 CACATGGGCCGGGACATC 60.517 66.667 2.18 0.00 0.00 3.06
493 494 4.127744 CCACATGGGCCGGGACAT 62.128 66.667 2.18 0.00 0.00 3.06
502 503 0.968901 AGCACATTCAGCCACATGGG 60.969 55.000 0.00 0.00 40.85 4.00
503 504 0.892755 AAGCACATTCAGCCACATGG 59.107 50.000 0.00 0.00 38.53 3.66
504 505 2.333926 CAAAGCACATTCAGCCACATG 58.666 47.619 0.00 0.00 0.00 3.21
505 506 1.274167 CCAAAGCACATTCAGCCACAT 59.726 47.619 0.00 0.00 0.00 3.21
506 507 0.675083 CCAAAGCACATTCAGCCACA 59.325 50.000 0.00 0.00 0.00 4.17
507 508 0.037975 CCCAAAGCACATTCAGCCAC 60.038 55.000 0.00 0.00 0.00 5.01
508 509 0.469705 ACCCAAAGCACATTCAGCCA 60.470 50.000 0.00 0.00 0.00 4.75
509 510 0.037975 CACCCAAAGCACATTCAGCC 60.038 55.000 0.00 0.00 0.00 4.85
510 511 0.961019 TCACCCAAAGCACATTCAGC 59.039 50.000 0.00 0.00 0.00 4.26
511 512 4.735578 GCATATCACCCAAAGCACATTCAG 60.736 45.833 0.00 0.00 0.00 3.02
512 513 3.130869 GCATATCACCCAAAGCACATTCA 59.869 43.478 0.00 0.00 0.00 2.57
513 514 3.491447 GGCATATCACCCAAAGCACATTC 60.491 47.826 0.00 0.00 0.00 2.67
514 515 2.431782 GGCATATCACCCAAAGCACATT 59.568 45.455 0.00 0.00 0.00 2.71
515 516 2.034124 GGCATATCACCCAAAGCACAT 58.966 47.619 0.00 0.00 0.00 3.21
516 517 1.473258 GGCATATCACCCAAAGCACA 58.527 50.000 0.00 0.00 0.00 4.57
533 534 0.671796 AAACTTAACGGTGCTTGGGC 59.328 50.000 0.00 0.00 39.26 5.36
534 535 5.883503 TTATAAACTTAACGGTGCTTGGG 57.116 39.130 0.00 0.00 0.00 4.12
535 536 5.798434 GCTTTATAAACTTAACGGTGCTTGG 59.202 40.000 0.00 0.00 0.00 3.61
536 537 6.608610 AGCTTTATAAACTTAACGGTGCTTG 58.391 36.000 0.00 0.00 0.00 4.01
537 538 6.812879 AGCTTTATAAACTTAACGGTGCTT 57.187 33.333 0.00 0.00 0.00 3.91
538 539 6.812879 AAGCTTTATAAACTTAACGGTGCT 57.187 33.333 0.00 4.77 0.00 4.40
539 540 6.183359 GCAAAGCTTTATAAACTTAACGGTGC 60.183 38.462 12.25 1.98 0.00 5.01
540 541 7.081976 AGCAAAGCTTTATAAACTTAACGGTG 58.918 34.615 12.25 0.00 33.89 4.94
541 542 7.210718 AGCAAAGCTTTATAAACTTAACGGT 57.789 32.000 12.25 0.00 33.89 4.83
641 644 0.447801 CGCGTTCAATTCCCTTCTGG 59.552 55.000 0.00 0.00 0.00 3.86
642 645 1.135972 CACGCGTTCAATTCCCTTCTG 60.136 52.381 10.22 0.00 0.00 3.02
685 688 2.205342 CCCCTGGTATCTTTCTTCCCA 58.795 52.381 0.00 0.00 0.00 4.37
686 689 1.133761 GCCCCTGGTATCTTTCTTCCC 60.134 57.143 0.00 0.00 0.00 3.97
689 692 1.065418 CGTGCCCCTGGTATCTTTCTT 60.065 52.381 0.00 0.00 0.00 2.52
695 698 2.109181 GAGCGTGCCCCTGGTATC 59.891 66.667 0.00 0.00 0.00 2.24
724 727 0.871722 CGGAGATGTGCGTTTTTCCA 59.128 50.000 0.00 0.00 31.86 3.53
725 728 1.128692 CTCGGAGATGTGCGTTTTTCC 59.871 52.381 3.22 0.00 38.89 3.13
736 739 8.824159 AATTTGAGACAATATACTCGGAGATG 57.176 34.615 12.86 5.21 36.11 2.90
739 742 9.400638 GAGTAATTTGAGACAATATACTCGGAG 57.599 37.037 2.83 2.83 36.11 4.63
746 749 9.967346 CCTCTTCGAGTAATTTGAGACAATATA 57.033 33.333 0.00 0.00 0.00 0.86
747 750 8.478877 ACCTCTTCGAGTAATTTGAGACAATAT 58.521 33.333 0.00 0.00 0.00 1.28
800 807 6.231211 TCTGTCTTCCCTTTTCAGTGTTATC 58.769 40.000 0.00 0.00 0.00 1.75
819 828 7.270579 GCCGTGAACAACTAAATAAAATCTGTC 59.729 37.037 0.00 0.00 0.00 3.51
821 830 6.526674 GGCCGTGAACAACTAAATAAAATCTG 59.473 38.462 0.00 0.00 0.00 2.90
832 841 0.940519 CGTTCGGCCGTGAACAACTA 60.941 55.000 27.15 0.00 46.77 2.24
834 843 2.247267 CGTTCGGCCGTGAACAAC 59.753 61.111 27.15 20.02 46.77 3.32
840 849 1.015085 TACAATTCCGTTCGGCCGTG 61.015 55.000 27.15 15.86 0.00 4.94
842 851 1.011333 ATTACAATTCCGTTCGGCCG 58.989 50.000 22.12 22.12 0.00 6.13
887 1033 2.994186 ACCAATCGGGCGTTAGTTAT 57.006 45.000 0.00 0.00 42.05 1.89
921 1067 0.616891 GGGTCCTCAACGTATTGGGT 59.383 55.000 0.00 0.00 34.08 4.51
979 1136 3.557595 GTGATCTCGATTGGATTCACACC 59.442 47.826 0.00 0.00 37.51 4.16
981 1138 3.130340 TCGTGATCTCGATTGGATTCACA 59.870 43.478 15.41 0.00 37.46 3.58
1025 1205 0.241213 CATCGCCTATGTCGATCGGT 59.759 55.000 16.41 4.57 43.87 4.69
1235 1418 1.148273 TCTTGCTCGTGCCCTTGTT 59.852 52.632 7.05 0.00 38.71 2.83
1332 1521 1.407656 AAGTGAGCCTTGTGACGGGA 61.408 55.000 0.00 0.00 30.18 5.14
1368 1557 0.172578 CCTCGTAATGGTCGCTGACA 59.827 55.000 10.14 0.00 33.68 3.58
1369 1558 0.172803 ACCTCGTAATGGTCGCTGAC 59.827 55.000 0.79 0.79 31.03 3.51
1370 1559 0.454600 GACCTCGTAATGGTCGCTGA 59.545 55.000 0.00 0.00 43.55 4.26
1371 1560 2.959275 GACCTCGTAATGGTCGCTG 58.041 57.895 0.00 0.00 43.55 5.18
1395 1596 3.133003 CCTCGACCATGTCTTTGTAGGAT 59.867 47.826 0.00 0.00 0.00 3.24
1487 1688 0.834687 TACCCACCGATCATAGGGGC 60.835 60.000 15.50 0.00 45.83 5.80
1512 1716 1.069090 GTCGAGGGTGACTGTGCAA 59.931 57.895 0.00 0.00 35.95 4.08
1544 1748 0.975556 TTCTAGGATCCGCAGTGCCA 60.976 55.000 10.11 0.00 0.00 4.92
1546 1750 0.461961 AGTTCTAGGATCCGCAGTGC 59.538 55.000 4.58 4.58 0.00 4.40
1762 2438 0.605319 GTGGTTGCAGGACATCGGAA 60.605 55.000 0.00 0.00 0.00 4.30
1770 2446 3.414136 AAGCACGGTGGTTGCAGGA 62.414 57.895 23.29 0.00 36.63 3.86
1818 2494 1.070758 CAGCCGTGTCTATGCCCTATT 59.929 52.381 0.00 0.00 0.00 1.73
1864 2544 1.393726 CTCATCGCGTCGATCTTCAG 58.606 55.000 5.77 2.16 45.19 3.02
1893 2573 1.923148 AGTGGCCCCTTGTAGCTAAAT 59.077 47.619 0.00 0.00 0.00 1.40
1941 2621 2.833794 TCCACTTGTTCAAACTCGAGG 58.166 47.619 18.41 0.00 0.00 4.63
2286 3000 2.745821 GTGTCCCCCTTGTTTATTCGAC 59.254 50.000 0.00 0.00 0.00 4.20
2340 3054 0.764890 GACCTACCATGGCAGCCATA 59.235 55.000 27.22 10.96 43.15 2.74
2485 3199 9.220767 GTCTCCACTGTCAATAAGTATTTCTTT 57.779 33.333 0.00 0.00 37.56 2.52
2495 3209 5.607477 ACTTTTCGTCTCCACTGTCAATAA 58.393 37.500 0.00 0.00 0.00 1.40
2562 3276 0.991920 TGGCCCCTAACTCTTTCCTG 59.008 55.000 0.00 0.00 0.00 3.86
2622 3336 9.330220 AGTATACGTACCATATTTCCCCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
2623 3337 8.906238 AGTATACGTACCATATTTCCCCTTAT 57.094 34.615 0.00 0.00 0.00 1.73
2624 3338 7.397192 GGAGTATACGTACCATATTTCCCCTTA 59.603 40.741 0.00 0.00 0.00 2.69
2674 3391 8.398878 TCCCGTCCAAAATAATAATAATGTCC 57.601 34.615 0.00 0.00 0.00 4.02
2687 3404 2.289382 GCCACAAATTCCCGTCCAAAAT 60.289 45.455 0.00 0.00 0.00 1.82
2689 3406 0.676736 GCCACAAATTCCCGTCCAAA 59.323 50.000 0.00 0.00 0.00 3.28
2695 3412 0.609131 ACTCCAGCCACAAATTCCCG 60.609 55.000 0.00 0.00 0.00 5.14
2704 3421 2.111999 TACCAGCACACTCCAGCCAC 62.112 60.000 0.00 0.00 0.00 5.01
2705 3422 1.841103 TACCAGCACACTCCAGCCA 60.841 57.895 0.00 0.00 0.00 4.75
2713 3430 2.738846 CTGTCAAGATGTACCAGCACAC 59.261 50.000 0.00 0.00 0.00 3.82
2773 3500 7.469870 CGCAATTTCCAAATATAAGATGTGGGA 60.470 37.037 0.00 0.00 0.00 4.37
2775 3502 7.202526 ACGCAATTTCCAAATATAAGATGTGG 58.797 34.615 0.00 0.00 0.00 4.17
2795 3532 3.275617 ACCTCCTATGCAAATACGCAA 57.724 42.857 0.00 0.00 46.87 4.85
2864 3605 1.744522 CATGAATGATGAACGTGCCCA 59.255 47.619 0.00 0.00 33.31 5.36
3376 4124 5.079689 AGAGGAGAAAGCTTAACTAGTGC 57.920 43.478 0.00 0.00 0.00 4.40
3421 4169 5.725362 ACCTAGACAAATCTCGAGGAAAAG 58.275 41.667 13.56 2.04 35.12 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.