Multiple sequence alignment - TraesCS7D01G020000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G020000 chr7D 100.000 1523 0 0 907 2429 8599540 8598018 0.000000e+00 2813
1 TraesCS7D01G020000 chr7D 100.000 597 0 0 1 597 8600446 8599850 0.000000e+00 1103
2 TraesCS7D01G020000 chr7D 88.485 825 85 6 974 1793 8699534 8698715 0.000000e+00 989
3 TraesCS7D01G020000 chr7D 84.232 482 57 11 67 533 8669081 8668604 3.680000e-123 451
4 TraesCS7D01G020000 chr7D 83.817 482 59 11 67 533 8678310 8677833 7.970000e-120 440
5 TraesCS7D01G020000 chr7D 83.402 482 61 11 67 533 8706898 8706421 1.730000e-116 429
6 TraesCS7D01G020000 chr7D 83.218 435 54 11 67 486 8645341 8644911 4.900000e-102 381
7 TraesCS7D01G020000 chr7D 84.488 303 34 7 67 357 8671767 8671466 1.100000e-73 287
8 TraesCS7D01G020000 chr7D 89.500 200 20 1 67 266 8660524 8660326 4.010000e-63 252
9 TraesCS7D01G020000 chr7D 89.500 200 20 1 67 266 8683392 8683194 4.010000e-63 252
10 TraesCS7D01G020000 chr7A 91.008 923 78 3 935 1852 9158106 9157184 0.000000e+00 1240
11 TraesCS7D01G020000 chr7A 88.341 892 94 6 907 1793 9524385 9523499 0.000000e+00 1062
12 TraesCS7D01G020000 chr7A 88.229 892 95 6 907 1793 9545475 9544589 0.000000e+00 1057
13 TraesCS7D01G020000 chr7A 88.004 892 97 6 907 1793 9608211 9607325 0.000000e+00 1046
14 TraesCS7D01G020000 chr7A 87.923 886 99 4 907 1788 9623804 9622923 0.000000e+00 1037
15 TraesCS7D01G020000 chr7A 87.746 865 95 7 929 1788 9587287 9586429 0.000000e+00 1000
16 TraesCS7D01G020000 chr7A 88.780 820 82 6 979 1793 9532017 9531203 0.000000e+00 996
17 TraesCS7D01G020000 chr7A 88.383 835 87 6 959 1788 9578608 9577779 0.000000e+00 996
18 TraesCS7D01G020000 chr7A 81.524 617 80 20 1 593 9159171 9158565 6.080000e-131 477
19 TraesCS7D01G020000 chrUn 89.500 200 20 1 67 266 354949851 354950049 4.010000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G020000 chr7D 8598018 8600446 2428 True 1958.0 2813 100.000 1 2429 2 chr7D.!!$R7 2428
1 TraesCS7D01G020000 chr7D 8698715 8699534 819 True 989.0 989 88.485 974 1793 1 chr7D.!!$R5 819
2 TraesCS7D01G020000 chr7D 8668604 8671767 3163 True 369.0 451 84.360 67 533 2 chr7D.!!$R8 466
3 TraesCS7D01G020000 chr7A 9523499 9524385 886 True 1062.0 1062 88.341 907 1793 1 chr7A.!!$R1 886
4 TraesCS7D01G020000 chr7A 9544589 9545475 886 True 1057.0 1057 88.229 907 1793 1 chr7A.!!$R3 886
5 TraesCS7D01G020000 chr7A 9607325 9608211 886 True 1046.0 1046 88.004 907 1793 1 chr7A.!!$R6 886
6 TraesCS7D01G020000 chr7A 9622923 9623804 881 True 1037.0 1037 87.923 907 1788 1 chr7A.!!$R7 881
7 TraesCS7D01G020000 chr7A 9586429 9587287 858 True 1000.0 1000 87.746 929 1788 1 chr7A.!!$R5 859
8 TraesCS7D01G020000 chr7A 9531203 9532017 814 True 996.0 996 88.780 979 1793 1 chr7A.!!$R2 814
9 TraesCS7D01G020000 chr7A 9577779 9578608 829 True 996.0 996 88.383 959 1788 1 chr7A.!!$R4 829
10 TraesCS7D01G020000 chr7A 9157184 9159171 1987 True 858.5 1240 86.266 1 1852 2 chr7A.!!$R8 1851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 3076 0.250338 GGCATCGTCCCCTGTAATCC 60.25 60.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 5491 0.105246 TGTCTTGGCAAACCCCCATT 60.105 50.0 0.0 0.0 33.59 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.022935 CCACCTCACGTACGCCTATATAAA 60.023 45.833 16.72 0.00 0.00 1.40
41 42 4.913924 CCTCACGTACGCCTATATAAACAC 59.086 45.833 16.72 0.00 0.00 3.32
45 46 2.159327 ACGCCTATATAAACACGCCC 57.841 50.000 0.00 0.00 0.00 6.13
50 51 3.660865 CCTATATAAACACGCCCAGTCC 58.339 50.000 0.00 0.00 0.00 3.85
66 67 2.027653 CAGTCCCTTCTTCTTCCCTCAC 60.028 54.545 0.00 0.00 0.00 3.51
67 68 1.279558 GTCCCTTCTTCTTCCCTCACC 59.720 57.143 0.00 0.00 0.00 4.02
70 71 1.981495 CCTTCTTCTTCCCTCACCAGT 59.019 52.381 0.00 0.00 0.00 4.00
73 2693 3.544698 TCTTCTTCCCTCACCAGTACT 57.455 47.619 0.00 0.00 0.00 2.73
117 2737 4.884164 AGCAAGAAAGCTATATCAACACCC 59.116 41.667 0.00 0.00 44.50 4.61
147 2767 4.809496 CCAAGAGCATGGCCCGCT 62.809 66.667 16.21 16.21 44.10 5.52
167 2787 4.096003 GCGGCCCTCTTGCTGGTA 62.096 66.667 0.00 0.00 38.10 3.25
186 2806 2.895680 CGCTGCTCTCCTTAGCCA 59.104 61.111 0.00 0.00 42.05 4.75
200 2820 1.402107 TAGCCATGCATCTCGCTCCA 61.402 55.000 14.10 0.00 43.06 3.86
205 2825 1.752358 ATGCATCTCGCTCCATCCGT 61.752 55.000 0.00 0.00 43.06 4.69
242 2862 0.821711 CGACCACAAAGCCTTCCCAA 60.822 55.000 0.00 0.00 0.00 4.12
270 2890 1.005394 CGTAAGCACAAGTCCCGGT 60.005 57.895 0.00 0.00 0.00 5.28
271 2891 0.601841 CGTAAGCACAAGTCCCGGTT 60.602 55.000 0.00 0.00 0.00 4.44
282 2914 3.476419 CCCGGTTATGCCCTCCGT 61.476 66.667 0.00 0.00 42.30 4.69
299 2931 0.600255 CGTCTTCGCAAACTCCCACT 60.600 55.000 0.00 0.00 0.00 4.00
310 2942 1.307343 CTCCCACTCCCTCACCCAT 60.307 63.158 0.00 0.00 0.00 4.00
311 2943 1.616327 TCCCACTCCCTCACCCATG 60.616 63.158 0.00 0.00 0.00 3.66
320 2952 4.343323 TCACCCATGCCCACACCG 62.343 66.667 0.00 0.00 0.00 4.94
322 2954 3.338250 ACCCATGCCCACACCGAT 61.338 61.111 0.00 0.00 0.00 4.18
362 2994 1.000521 ACCGACCCCGACTATGTCA 60.001 57.895 0.00 0.00 38.22 3.58
404 3036 4.418328 GCACCCACGCCCATACCA 62.418 66.667 0.00 0.00 0.00 3.25
406 3038 1.077068 CACCCACGCCCATACCAAT 60.077 57.895 0.00 0.00 0.00 3.16
410 3042 1.531748 CACGCCCATACCAATCCCT 59.468 57.895 0.00 0.00 0.00 4.20
411 3043 0.535102 CACGCCCATACCAATCCCTC 60.535 60.000 0.00 0.00 0.00 4.30
412 3044 0.986019 ACGCCCATACCAATCCCTCA 60.986 55.000 0.00 0.00 0.00 3.86
415 3047 1.202818 GCCCATACCAATCCCTCAGAC 60.203 57.143 0.00 0.00 0.00 3.51
416 3048 2.412591 CCCATACCAATCCCTCAGACT 58.587 52.381 0.00 0.00 0.00 3.24
420 3052 2.630889 ACCAATCCCTCAGACTCTGA 57.369 50.000 8.50 8.50 38.25 3.27
421 3053 2.183679 ACCAATCCCTCAGACTCTGAC 58.816 52.381 4.50 0.00 35.39 3.51
422 3054 2.182827 CCAATCCCTCAGACTCTGACA 58.817 52.381 4.50 0.00 35.39 3.58
423 3055 2.093764 CCAATCCCTCAGACTCTGACAC 60.094 54.545 4.50 0.00 35.39 3.67
424 3056 1.859302 ATCCCTCAGACTCTGACACC 58.141 55.000 4.50 0.00 35.39 4.16
425 3057 0.609406 TCCCTCAGACTCTGACACCG 60.609 60.000 4.50 0.00 35.39 4.94
426 3058 1.599606 CCCTCAGACTCTGACACCGG 61.600 65.000 4.50 0.00 35.39 5.28
427 3059 1.214062 CTCAGACTCTGACACCGGC 59.786 63.158 0.00 0.00 35.39 6.13
428 3060 1.527433 CTCAGACTCTGACACCGGCA 61.527 60.000 0.00 0.00 35.39 5.69
429 3061 0.900182 TCAGACTCTGACACCGGCAT 60.900 55.000 0.00 0.00 35.39 4.40
430 3062 0.459237 CAGACTCTGACACCGGCATC 60.459 60.000 0.00 0.00 32.44 3.91
431 3063 1.517257 GACTCTGACACCGGCATCG 60.517 63.158 0.00 0.00 0.00 3.84
432 3064 2.214181 GACTCTGACACCGGCATCGT 62.214 60.000 0.00 0.00 33.95 3.73
433 3065 1.517257 CTCTGACACCGGCATCGTC 60.517 63.158 0.00 3.95 33.95 4.20
434 3066 2.509336 CTGACACCGGCATCGTCC 60.509 66.667 0.00 0.00 33.95 4.79
435 3067 4.077184 TGACACCGGCATCGTCCC 62.077 66.667 0.00 0.00 33.95 4.46
436 3068 4.832608 GACACCGGCATCGTCCCC 62.833 72.222 0.00 0.00 33.95 4.81
438 3070 4.838152 CACCGGCATCGTCCCCTG 62.838 72.222 0.00 0.00 33.95 4.45
440 3072 3.151710 CCGGCATCGTCCCCTGTA 61.152 66.667 0.00 0.00 33.95 2.74
441 3073 2.727392 CCGGCATCGTCCCCTGTAA 61.727 63.158 0.00 0.00 33.95 2.41
442 3074 1.445942 CGGCATCGTCCCCTGTAAT 59.554 57.895 0.00 0.00 0.00 1.89
443 3075 0.600255 CGGCATCGTCCCCTGTAATC 60.600 60.000 0.00 0.00 0.00 1.75
444 3076 0.250338 GGCATCGTCCCCTGTAATCC 60.250 60.000 0.00 0.00 0.00 3.01
445 3077 0.250338 GCATCGTCCCCTGTAATCCC 60.250 60.000 0.00 0.00 0.00 3.85
446 3078 1.128200 CATCGTCCCCTGTAATCCCA 58.872 55.000 0.00 0.00 0.00 4.37
457 3089 4.570933 CCCTGTAATCCCACCAATACCAAA 60.571 45.833 0.00 0.00 0.00 3.28
463 3095 2.309458 TCCCACCAATACCAAACCCTAC 59.691 50.000 0.00 0.00 0.00 3.18
508 3140 0.698818 ATCTCTCCAACACCAACCCC 59.301 55.000 0.00 0.00 0.00 4.95
510 3142 2.282180 CTCCAACACCAACCCCGG 60.282 66.667 0.00 0.00 0.00 5.73
527 3159 2.663852 GTGACCCCAACACCGACG 60.664 66.667 0.00 0.00 32.84 5.12
540 3199 2.636412 CCGACGCCTGTCTCTCCAA 61.636 63.158 0.00 0.00 43.21 3.53
547 3206 1.884235 CCTGTCTCTCCAACACCAAC 58.116 55.000 0.00 0.00 0.00 3.77
553 3212 4.589675 TCCAACACCAACCCCGGC 62.590 66.667 0.00 0.00 0.00 6.13
554 3213 4.904590 CCAACACCAACCCCGGCA 62.905 66.667 0.00 0.00 0.00 5.69
593 3252 1.302511 GATGCCACCAACACCGACT 60.303 57.895 0.00 0.00 0.00 4.18
595 3254 2.668550 GCCACCAACACCGACTCC 60.669 66.667 0.00 0.00 0.00 3.85
596 3255 2.357034 CCACCAACACCGACTCCG 60.357 66.667 0.00 0.00 0.00 4.63
933 4019 2.067605 AACACCGACCCCTGTGACA 61.068 57.895 0.00 0.00 36.35 3.58
942 4028 3.345808 CCTGTGACACCAACGCCG 61.346 66.667 2.45 0.00 0.00 6.46
977 4063 3.234630 CTCCAACGCCAACTCCGGA 62.235 63.158 2.93 2.93 0.00 5.14
997 4083 4.344865 CCCCAACACCGACCCCTG 62.345 72.222 0.00 0.00 0.00 4.45
1015 4101 2.983030 TGATGCCGCCAACACCAC 60.983 61.111 0.00 0.00 0.00 4.16
1032 4118 2.928396 CCCCCTGTGGTTCCGACT 60.928 66.667 0.00 0.00 0.00 4.18
1041 4127 2.432628 GTTCCGACTCCAGCACCG 60.433 66.667 0.00 0.00 0.00 4.94
1046 4132 3.311110 GACTCCAGCACCGACCCA 61.311 66.667 0.00 0.00 0.00 4.51
1061 4147 1.194781 ACCCATGTCTCTCCAACGCT 61.195 55.000 0.00 0.00 0.00 5.07
1249 4335 1.887242 GCGGTGATCGGCAATAGCA 60.887 57.895 0.00 0.00 44.61 3.49
1342 4428 1.073199 AAGGTCAAGGCCCTCAACG 59.927 57.895 0.00 0.00 0.00 4.10
1409 4495 2.125912 CAAGAGAGTGCCGGACGG 60.126 66.667 5.05 6.35 38.57 4.79
1436 4522 0.618458 TGCCCGAACTAAGCTCCATT 59.382 50.000 0.00 0.00 0.00 3.16
1477 4563 4.898265 ACTATCAGTATCACCTGCATCTGT 59.102 41.667 0.00 0.00 32.32 3.41
1491 4577 1.721389 CATCTGTATGCGATACGTGCC 59.279 52.381 0.00 0.00 38.59 5.01
1530 4616 2.089201 TCACACAGGTCACGTATCGAT 58.911 47.619 2.16 2.16 0.00 3.59
1556 4642 9.435688 TGTGTAATAATCTATATGCACATGGAC 57.564 33.333 0.00 0.00 31.76 4.02
1622 4711 6.183360 TGCATACATTGTGTTTGTGTAACTGT 60.183 34.615 0.00 0.00 38.04 3.55
1705 4795 8.711457 AGTGTGTGTTTTCTTTTTGAAGAATTG 58.289 29.630 2.77 0.00 38.46 2.32
1726 4816 9.157259 GAATTGTGAATAAAATGTTTGTGTTGC 57.843 29.630 0.00 0.00 0.00 4.17
1758 4849 7.974482 AAGTTTTCACATGTACTAGTAACCC 57.026 36.000 3.61 0.00 0.00 4.11
1767 4858 6.955851 ACATGTACTAGTAACCCTACCAAGAA 59.044 38.462 3.61 0.00 0.00 2.52
1789 4880 6.857964 AGAAACTTGTTGAATCATACGCTTTG 59.142 34.615 0.00 0.00 0.00 2.77
1793 4884 2.830772 TGAATCATACGCTTTGCAGC 57.169 45.000 0.00 0.00 43.41 5.25
1802 4893 1.226491 GCTTTGCAGCTATGTGCCG 60.226 57.895 0.00 0.00 43.51 5.69
1811 4902 3.124297 GCAGCTATGTGCCGAGATATTTC 59.876 47.826 0.00 0.00 44.23 2.17
1818 4909 8.289618 GCTATGTGCCGAGATATTTCAAAAATA 58.710 33.333 0.00 0.00 35.15 1.40
1848 4939 9.677567 AAATATACATGAACACAGAACAAACAC 57.322 29.630 0.00 0.00 0.00 3.32
1849 4940 6.691754 ATACATGAACACAGAACAAACACA 57.308 33.333 0.00 0.00 0.00 3.72
1850 4941 4.732784 ACATGAACACAGAACAAACACAC 58.267 39.130 0.00 0.00 0.00 3.82
1851 4942 4.217334 ACATGAACACAGAACAAACACACA 59.783 37.500 0.00 0.00 0.00 3.72
1852 4943 5.105797 ACATGAACACAGAACAAACACACAT 60.106 36.000 0.00 0.00 0.00 3.21
1853 4944 6.094742 ACATGAACACAGAACAAACACACATA 59.905 34.615 0.00 0.00 0.00 2.29
1854 4945 6.691754 TGAACACAGAACAAACACACATAT 57.308 33.333 0.00 0.00 0.00 1.78
1855 4946 6.493978 TGAACACAGAACAAACACACATATG 58.506 36.000 0.00 0.00 0.00 1.78
1856 4947 4.858935 ACACAGAACAAACACACATATGC 58.141 39.130 1.58 0.00 0.00 3.14
1869 4960 1.530720 ACATATGCACACACACACACG 59.469 47.619 1.58 0.00 0.00 4.49
1876 4967 1.024046 ACACACACACACGCACACAT 61.024 50.000 0.00 0.00 0.00 3.21
1877 4968 0.589479 CACACACACACGCACACATG 60.589 55.000 0.00 0.00 0.00 3.21
1908 4999 4.649954 GCGCGCACACACAGACAC 62.650 66.667 29.10 0.00 0.00 3.67
1909 5000 3.261216 CGCGCACACACAGACACA 61.261 61.111 8.75 0.00 0.00 3.72
1910 5001 2.324477 GCGCACACACAGACACAC 59.676 61.111 0.30 0.00 0.00 3.82
1911 5002 2.460275 GCGCACACACAGACACACA 61.460 57.895 0.30 0.00 0.00 3.72
1912 5003 1.976478 GCGCACACACAGACACACAA 61.976 55.000 0.30 0.00 0.00 3.33
1913 5004 0.445829 CGCACACACAGACACACAAA 59.554 50.000 0.00 0.00 0.00 2.83
1914 5005 1.063912 CGCACACACAGACACACAAAT 59.936 47.619 0.00 0.00 0.00 2.32
1915 5006 2.477694 CGCACACACAGACACACAAATT 60.478 45.455 0.00 0.00 0.00 1.82
1916 5007 3.510719 GCACACACAGACACACAAATTT 58.489 40.909 0.00 0.00 0.00 1.82
1917 5008 4.667262 GCACACACAGACACACAAATTTA 58.333 39.130 0.00 0.00 0.00 1.40
1918 5009 5.280945 GCACACACAGACACACAAATTTAT 58.719 37.500 0.00 0.00 0.00 1.40
1919 5010 6.434596 GCACACACAGACACACAAATTTATA 58.565 36.000 0.00 0.00 0.00 0.98
1920 5011 6.915300 GCACACACAGACACACAAATTTATAA 59.085 34.615 0.00 0.00 0.00 0.98
1921 5012 7.594758 GCACACACAGACACACAAATTTATAAT 59.405 33.333 0.00 0.00 0.00 1.28
1922 5013 8.904712 CACACACAGACACACAAATTTATAATG 58.095 33.333 0.00 0.00 0.00 1.90
1923 5014 8.081633 ACACACAGACACACAAATTTATAATGG 58.918 33.333 0.00 0.00 0.00 3.16
1924 5015 8.081633 CACACAGACACACAAATTTATAATGGT 58.918 33.333 0.00 0.00 0.00 3.55
1925 5016 8.637986 ACACAGACACACAAATTTATAATGGTT 58.362 29.630 0.00 0.00 0.00 3.67
1926 5017 9.474920 CACAGACACACAAATTTATAATGGTTT 57.525 29.630 0.00 0.00 0.00 3.27
1927 5018 9.474920 ACAGACACACAAATTTATAATGGTTTG 57.525 29.630 12.95 12.95 37.52 2.93
1928 5019 8.434661 CAGACACACAAATTTATAATGGTTTGC 58.565 33.333 13.84 0.00 35.53 3.68
1929 5020 8.147058 AGACACACAAATTTATAATGGTTTGCA 58.853 29.630 13.84 0.00 35.53 4.08
1930 5021 8.845413 ACACACAAATTTATAATGGTTTGCAT 57.155 26.923 13.84 4.91 35.53 3.96
1931 5022 8.719648 ACACACAAATTTATAATGGTTTGCATG 58.280 29.630 13.84 13.78 35.53 4.06
1932 5023 8.719648 CACACAAATTTATAATGGTTTGCATGT 58.280 29.630 13.84 10.66 35.53 3.21
1933 5024 9.935241 ACACAAATTTATAATGGTTTGCATGTA 57.065 25.926 13.84 0.00 35.53 2.29
1943 5034 6.971527 ATGGTTTGCATGTATTTGTCAATG 57.028 33.333 0.00 0.00 0.00 2.82
1944 5035 6.094193 TGGTTTGCATGTATTTGTCAATGA 57.906 33.333 0.00 0.00 0.00 2.57
1945 5036 6.699366 TGGTTTGCATGTATTTGTCAATGAT 58.301 32.000 0.00 0.00 0.00 2.45
1946 5037 7.834803 TGGTTTGCATGTATTTGTCAATGATA 58.165 30.769 0.00 0.00 0.00 2.15
1947 5038 7.975058 TGGTTTGCATGTATTTGTCAATGATAG 59.025 33.333 0.00 0.00 0.00 2.08
1948 5039 7.436080 GGTTTGCATGTATTTGTCAATGATAGG 59.564 37.037 0.00 0.00 0.00 2.57
1949 5040 7.878547 TTGCATGTATTTGTCAATGATAGGA 57.121 32.000 0.00 0.00 0.00 2.94
1950 5041 7.500720 TGCATGTATTTGTCAATGATAGGAG 57.499 36.000 0.00 0.00 0.00 3.69
1951 5042 7.056006 TGCATGTATTTGTCAATGATAGGAGT 58.944 34.615 0.00 0.00 0.00 3.85
1952 5043 7.557358 TGCATGTATTTGTCAATGATAGGAGTT 59.443 33.333 0.00 0.00 0.00 3.01
1953 5044 8.072567 GCATGTATTTGTCAATGATAGGAGTTC 58.927 37.037 0.00 0.00 0.00 3.01
1954 5045 9.112725 CATGTATTTGTCAATGATAGGAGTTCA 57.887 33.333 0.00 0.00 0.00 3.18
1955 5046 9.685276 ATGTATTTGTCAATGATAGGAGTTCAA 57.315 29.630 0.00 0.00 0.00 2.69
1956 5047 9.513906 TGTATTTGTCAATGATAGGAGTTCAAA 57.486 29.630 0.00 0.00 0.00 2.69
1959 5050 9.865321 ATTTGTCAATGATAGGAGTTCAAAATG 57.135 29.630 0.00 0.00 0.00 2.32
1960 5051 8.408043 TTGTCAATGATAGGAGTTCAAAATGT 57.592 30.769 0.00 0.00 0.00 2.71
1961 5052 9.513906 TTGTCAATGATAGGAGTTCAAAATGTA 57.486 29.630 0.00 0.00 0.00 2.29
1962 5053 9.685276 TGTCAATGATAGGAGTTCAAAATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
1968 5059 9.878667 TGATAGGAGTTCAAAATGTATAACGAA 57.121 29.630 0.00 0.00 0.00 3.85
1971 5062 8.842358 AGGAGTTCAAAATGTATAACGAAGAA 57.158 30.769 0.00 0.00 0.00 2.52
1972 5063 8.718734 AGGAGTTCAAAATGTATAACGAAGAAC 58.281 33.333 0.00 0.00 34.61 3.01
1973 5064 8.500773 GGAGTTCAAAATGTATAACGAAGAACA 58.499 33.333 0.00 0.00 36.29 3.18
1974 5065 9.314501 GAGTTCAAAATGTATAACGAAGAACAC 57.685 33.333 0.00 0.00 36.29 3.32
1975 5066 9.052759 AGTTCAAAATGTATAACGAAGAACACT 57.947 29.630 0.00 0.00 36.29 3.55
1976 5067 9.103048 GTTCAAAATGTATAACGAAGAACACTG 57.897 33.333 0.00 0.00 34.56 3.66
1977 5068 8.373048 TCAAAATGTATAACGAAGAACACTGT 57.627 30.769 0.00 0.00 0.00 3.55
1978 5069 9.478768 TCAAAATGTATAACGAAGAACACTGTA 57.521 29.630 0.00 0.00 0.00 2.74
2065 5156 0.811281 AAAACTAGCATTGCGAGGGC 59.189 50.000 20.67 0.00 35.65 5.19
2074 5165 4.941609 TGCGAGGGCATCTTCTTC 57.058 55.556 0.00 0.00 46.21 2.87
2075 5166 1.982430 TGCGAGGGCATCTTCTTCA 59.018 52.632 0.00 0.00 46.21 3.02
2076 5167 0.324614 TGCGAGGGCATCTTCTTCAA 59.675 50.000 0.00 0.00 46.21 2.69
2077 5168 1.271325 TGCGAGGGCATCTTCTTCAAA 60.271 47.619 0.00 0.00 46.21 2.69
2078 5169 2.019984 GCGAGGGCATCTTCTTCAAAT 58.980 47.619 0.00 0.00 39.62 2.32
2079 5170 3.206150 GCGAGGGCATCTTCTTCAAATA 58.794 45.455 0.00 0.00 39.62 1.40
2080 5171 3.817647 GCGAGGGCATCTTCTTCAAATAT 59.182 43.478 0.00 0.00 39.62 1.28
2081 5172 4.320057 GCGAGGGCATCTTCTTCAAATATG 60.320 45.833 0.00 0.00 39.62 1.78
2082 5173 4.320057 CGAGGGCATCTTCTTCAAATATGC 60.320 45.833 0.00 0.00 41.69 3.14
2083 5174 4.539726 AGGGCATCTTCTTCAAATATGCA 58.460 39.130 7.77 0.00 43.67 3.96
2084 5175 5.145564 AGGGCATCTTCTTCAAATATGCAT 58.854 37.500 3.79 3.79 43.67 3.96
2085 5176 5.010719 AGGGCATCTTCTTCAAATATGCATG 59.989 40.000 10.16 0.00 43.67 4.06
2086 5177 4.684703 GGCATCTTCTTCAAATATGCATGC 59.315 41.667 11.82 11.82 43.67 4.06
2087 5178 5.286438 GCATCTTCTTCAAATATGCATGCA 58.714 37.500 25.04 25.04 41.94 3.96
2088 5179 5.751509 GCATCTTCTTCAAATATGCATGCAA 59.248 36.000 26.68 14.46 41.94 4.08
2089 5180 6.423905 GCATCTTCTTCAAATATGCATGCAAT 59.576 34.615 26.68 16.11 41.94 3.56
2090 5181 7.597369 GCATCTTCTTCAAATATGCATGCAATA 59.403 33.333 26.68 17.10 41.94 1.90
2091 5182 8.912658 CATCTTCTTCAAATATGCATGCAATAC 58.087 33.333 26.68 0.00 0.00 1.89
2092 5183 8.229253 TCTTCTTCAAATATGCATGCAATACT 57.771 30.769 26.68 10.93 0.00 2.12
2093 5184 9.341078 TCTTCTTCAAATATGCATGCAATACTA 57.659 29.630 26.68 13.05 0.00 1.82
2137 5228 6.952773 TTATAACCACCTCCAATGTTATGC 57.047 37.500 0.00 0.00 35.36 3.14
2138 5229 3.456380 AACCACCTCCAATGTTATGCT 57.544 42.857 0.00 0.00 0.00 3.79
2139 5230 4.584638 AACCACCTCCAATGTTATGCTA 57.415 40.909 0.00 0.00 0.00 3.49
2140 5231 4.584638 ACCACCTCCAATGTTATGCTAA 57.415 40.909 0.00 0.00 0.00 3.09
2141 5232 4.929479 ACCACCTCCAATGTTATGCTAAA 58.071 39.130 0.00 0.00 0.00 1.85
2142 5233 4.705023 ACCACCTCCAATGTTATGCTAAAC 59.295 41.667 0.00 0.00 0.00 2.01
2143 5234 4.704540 CCACCTCCAATGTTATGCTAAACA 59.295 41.667 6.85 6.85 43.16 2.83
2144 5235 5.393027 CCACCTCCAATGTTATGCTAAACAC 60.393 44.000 6.59 0.00 41.89 3.32
2145 5236 5.182950 CACCTCCAATGTTATGCTAAACACA 59.817 40.000 6.59 0.00 41.89 3.72
2146 5237 5.772672 ACCTCCAATGTTATGCTAAACACAA 59.227 36.000 6.59 0.00 41.89 3.33
2147 5238 6.437162 ACCTCCAATGTTATGCTAAACACAAT 59.563 34.615 6.59 0.00 41.89 2.71
2148 5239 7.613801 ACCTCCAATGTTATGCTAAACACAATA 59.386 33.333 6.59 0.00 41.89 1.90
2149 5240 8.632679 CCTCCAATGTTATGCTAAACACAATAT 58.367 33.333 6.59 0.00 41.89 1.28
2150 5241 9.669353 CTCCAATGTTATGCTAAACACAATATC 57.331 33.333 6.59 0.00 41.89 1.63
2151 5242 9.183368 TCCAATGTTATGCTAAACACAATATCA 57.817 29.630 6.59 0.00 41.89 2.15
2152 5243 9.970395 CCAATGTTATGCTAAACACAATATCAT 57.030 29.630 6.59 0.00 41.89 2.45
2154 5245 9.467258 AATGTTATGCTAAACACAATATCATGC 57.533 29.630 6.59 0.00 41.89 4.06
2155 5246 7.994194 TGTTATGCTAAACACAATATCATGCA 58.006 30.769 0.00 0.00 34.50 3.96
2156 5247 8.130469 TGTTATGCTAAACACAATATCATGCAG 58.870 33.333 0.00 0.00 34.50 4.41
2157 5248 5.503662 TGCTAAACACAATATCATGCAGG 57.496 39.130 0.00 0.00 0.00 4.85
2158 5249 4.338964 TGCTAAACACAATATCATGCAGGG 59.661 41.667 0.00 0.00 0.00 4.45
2159 5250 4.580167 GCTAAACACAATATCATGCAGGGA 59.420 41.667 0.00 0.00 0.00 4.20
2160 5251 5.067674 GCTAAACACAATATCATGCAGGGAA 59.932 40.000 0.00 0.00 0.00 3.97
2161 5252 6.239120 GCTAAACACAATATCATGCAGGGAAT 60.239 38.462 0.00 0.00 0.00 3.01
2162 5253 7.040478 GCTAAACACAATATCATGCAGGGAATA 60.040 37.037 0.00 0.00 0.00 1.75
2163 5254 7.844493 AAACACAATATCATGCAGGGAATAT 57.156 32.000 0.00 0.00 0.00 1.28
2164 5255 7.458409 AACACAATATCATGCAGGGAATATC 57.542 36.000 0.00 0.00 0.00 1.63
2165 5256 6.787170 ACACAATATCATGCAGGGAATATCT 58.213 36.000 0.00 0.00 0.00 1.98
2166 5257 7.236529 ACACAATATCATGCAGGGAATATCTT 58.763 34.615 0.00 0.00 0.00 2.40
2167 5258 8.385491 ACACAATATCATGCAGGGAATATCTTA 58.615 33.333 0.00 0.00 0.00 2.10
2168 5259 9.234827 CACAATATCATGCAGGGAATATCTTAA 57.765 33.333 0.00 0.00 0.00 1.85
2169 5260 9.986157 ACAATATCATGCAGGGAATATCTTAAT 57.014 29.630 0.00 0.00 0.00 1.40
2222 5313 9.575868 TTTTTATATCCTTACAAGAACACCACA 57.424 29.630 0.00 0.00 0.00 4.17
2223 5314 8.556213 TTTATATCCTTACAAGAACACCACAC 57.444 34.615 0.00 0.00 0.00 3.82
2224 5315 4.706842 ATCCTTACAAGAACACCACACT 57.293 40.909 0.00 0.00 0.00 3.55
2225 5316 5.818678 ATCCTTACAAGAACACCACACTA 57.181 39.130 0.00 0.00 0.00 2.74
2226 5317 5.617528 TCCTTACAAGAACACCACACTAA 57.382 39.130 0.00 0.00 0.00 2.24
2227 5318 5.607477 TCCTTACAAGAACACCACACTAAG 58.393 41.667 0.00 0.00 0.00 2.18
2228 5319 5.129815 TCCTTACAAGAACACCACACTAAGT 59.870 40.000 0.00 0.00 0.00 2.24
2229 5320 6.324512 TCCTTACAAGAACACCACACTAAGTA 59.675 38.462 0.00 0.00 0.00 2.24
2230 5321 7.015877 TCCTTACAAGAACACCACACTAAGTAT 59.984 37.037 0.00 0.00 0.00 2.12
2231 5322 7.331193 CCTTACAAGAACACCACACTAAGTATC 59.669 40.741 0.00 0.00 0.00 2.24
2232 5323 5.227908 ACAAGAACACCACACTAAGTATCG 58.772 41.667 0.00 0.00 0.00 2.92
2233 5324 3.846360 AGAACACCACACTAAGTATCGC 58.154 45.455 0.00 0.00 0.00 4.58
2234 5325 3.257375 AGAACACCACACTAAGTATCGCA 59.743 43.478 0.00 0.00 0.00 5.10
2235 5326 3.887621 ACACCACACTAAGTATCGCAT 57.112 42.857 0.00 0.00 0.00 4.73
2236 5327 3.521560 ACACCACACTAAGTATCGCATG 58.478 45.455 0.00 0.00 0.00 4.06
2237 5328 3.056107 ACACCACACTAAGTATCGCATGT 60.056 43.478 0.00 0.00 0.00 3.21
2238 5329 4.158949 ACACCACACTAAGTATCGCATGTA 59.841 41.667 0.00 0.00 0.00 2.29
2239 5330 5.163447 ACACCACACTAAGTATCGCATGTAT 60.163 40.000 0.00 0.00 0.00 2.29
2240 5331 5.753438 CACCACACTAAGTATCGCATGTATT 59.247 40.000 0.00 0.00 0.00 1.89
2241 5332 5.753438 ACCACACTAAGTATCGCATGTATTG 59.247 40.000 0.00 0.00 0.00 1.90
2242 5333 5.753438 CCACACTAAGTATCGCATGTATTGT 59.247 40.000 0.00 0.00 0.00 2.71
2243 5334 6.257849 CCACACTAAGTATCGCATGTATTGTT 59.742 38.462 0.00 0.00 0.00 2.83
2244 5335 7.119360 CACACTAAGTATCGCATGTATTGTTG 58.881 38.462 0.00 0.00 0.00 3.33
2245 5336 6.129393 CACTAAGTATCGCATGTATTGTTGC 58.871 40.000 0.00 0.00 35.50 4.17
2246 5337 4.552166 AAGTATCGCATGTATTGTTGCC 57.448 40.909 0.00 0.00 35.41 4.52
2247 5338 3.808728 AGTATCGCATGTATTGTTGCCT 58.191 40.909 0.00 0.00 35.41 4.75
2248 5339 4.199310 AGTATCGCATGTATTGTTGCCTT 58.801 39.130 0.00 0.00 35.41 4.35
2249 5340 4.640201 AGTATCGCATGTATTGTTGCCTTT 59.360 37.500 0.00 0.00 35.41 3.11
2250 5341 3.214697 TCGCATGTATTGTTGCCTTTG 57.785 42.857 0.00 0.00 35.41 2.77
2251 5342 2.556189 TCGCATGTATTGTTGCCTTTGT 59.444 40.909 0.00 0.00 35.41 2.83
2252 5343 3.753797 TCGCATGTATTGTTGCCTTTGTA 59.246 39.130 0.00 0.00 35.41 2.41
2253 5344 4.097714 CGCATGTATTGTTGCCTTTGTAG 58.902 43.478 0.00 0.00 35.41 2.74
2254 5345 4.142708 CGCATGTATTGTTGCCTTTGTAGA 60.143 41.667 0.00 0.00 35.41 2.59
2255 5346 5.335127 GCATGTATTGTTGCCTTTGTAGAG 58.665 41.667 0.00 0.00 32.66 2.43
2256 5347 5.106157 GCATGTATTGTTGCCTTTGTAGAGT 60.106 40.000 0.00 0.00 32.66 3.24
2257 5348 6.093495 GCATGTATTGTTGCCTTTGTAGAGTA 59.907 38.462 0.00 0.00 32.66 2.59
2258 5349 7.201732 GCATGTATTGTTGCCTTTGTAGAGTAT 60.202 37.037 0.00 0.00 32.66 2.12
2259 5350 8.677300 CATGTATTGTTGCCTTTGTAGAGTATT 58.323 33.333 0.00 0.00 0.00 1.89
2260 5351 9.899661 ATGTATTGTTGCCTTTGTAGAGTATTA 57.100 29.630 0.00 0.00 0.00 0.98
2261 5352 9.378551 TGTATTGTTGCCTTTGTAGAGTATTAG 57.621 33.333 0.00 0.00 0.00 1.73
2262 5353 9.595823 GTATTGTTGCCTTTGTAGAGTATTAGA 57.404 33.333 0.00 0.00 0.00 2.10
2264 5355 8.492673 TTGTTGCCTTTGTAGAGTATTAGATG 57.507 34.615 0.00 0.00 0.00 2.90
2265 5356 7.847096 TGTTGCCTTTGTAGAGTATTAGATGA 58.153 34.615 0.00 0.00 0.00 2.92
2266 5357 7.981789 TGTTGCCTTTGTAGAGTATTAGATGAG 59.018 37.037 0.00 0.00 0.00 2.90
2267 5358 7.898014 TGCCTTTGTAGAGTATTAGATGAGA 57.102 36.000 0.00 0.00 0.00 3.27
2268 5359 8.306313 TGCCTTTGTAGAGTATTAGATGAGAA 57.694 34.615 0.00 0.00 0.00 2.87
2269 5360 8.758829 TGCCTTTGTAGAGTATTAGATGAGAAA 58.241 33.333 0.00 0.00 0.00 2.52
2270 5361 9.036671 GCCTTTGTAGAGTATTAGATGAGAAAC 57.963 37.037 0.00 0.00 0.00 2.78
2286 5377 9.381033 AGATGAGAAACTAATCTTCAGATTGTG 57.619 33.333 11.65 7.35 43.90 3.33
2287 5378 9.376075 GATGAGAAACTAATCTTCAGATTGTGA 57.624 33.333 11.65 0.00 43.90 3.58
2288 5379 8.768957 TGAGAAACTAATCTTCAGATTGTGAG 57.231 34.615 11.65 4.69 43.90 3.51
2289 5380 7.821359 TGAGAAACTAATCTTCAGATTGTGAGG 59.179 37.037 11.65 0.00 43.90 3.86
2290 5381 6.597280 AGAAACTAATCTTCAGATTGTGAGGC 59.403 38.462 11.65 0.00 43.90 4.70
2291 5382 5.426689 ACTAATCTTCAGATTGTGAGGCA 57.573 39.130 11.65 0.00 43.90 4.75
2292 5383 5.809001 ACTAATCTTCAGATTGTGAGGCAA 58.191 37.500 11.65 0.00 43.90 4.52
2293 5384 5.645497 ACTAATCTTCAGATTGTGAGGCAAC 59.355 40.000 11.65 0.00 43.90 4.17
2295 5386 5.809001 AATCTTCAGATTGTGAGGCAACTA 58.191 37.500 1.04 0.00 45.41 2.24
2296 5387 6.421485 AATCTTCAGATTGTGAGGCAACTAT 58.579 36.000 1.04 0.00 45.41 2.12
2297 5388 6.888632 AATCTTCAGATTGTGAGGCAACTATT 59.111 34.615 1.04 0.00 45.41 1.73
2298 5389 8.049117 AATCTTCAGATTGTGAGGCAACTATTA 58.951 33.333 1.04 0.00 45.41 0.98
2312 5403 7.593875 GGCAACTATTAATTTTGCATTGTGA 57.406 32.000 24.69 0.00 46.12 3.58
2313 5404 8.200364 GGCAACTATTAATTTTGCATTGTGAT 57.800 30.769 24.69 0.00 46.12 3.06
2314 5405 9.311916 GGCAACTATTAATTTTGCATTGTGATA 57.688 29.630 24.69 0.00 46.12 2.15
2323 5414 8.922058 AATTTTGCATTGTGATAGATCAGTTC 57.078 30.769 0.00 0.00 37.51 3.01
2324 5415 7.451501 TTTTGCATTGTGATAGATCAGTTCA 57.548 32.000 0.00 0.00 37.51 3.18
2325 5416 7.634671 TTTGCATTGTGATAGATCAGTTCAT 57.365 32.000 0.00 0.00 37.51 2.57
2326 5417 6.613755 TGCATTGTGATAGATCAGTTCATG 57.386 37.500 0.00 0.00 37.51 3.07
2327 5418 6.350906 TGCATTGTGATAGATCAGTTCATGA 58.649 36.000 0.00 0.00 43.70 3.07
2342 5433 8.797350 TCAGTTCATGATGAAACATAGATTGT 57.203 30.769 9.78 0.00 38.22 2.71
2343 5434 9.234827 TCAGTTCATGATGAAACATAGATTGTT 57.765 29.630 9.78 0.00 40.88 2.83
2396 5487 7.502120 AAAATCTGTATATGGTGATGCAGAC 57.498 36.000 6.37 0.00 46.87 3.51
2397 5488 5.813513 ATCTGTATATGGTGATGCAGACA 57.186 39.130 6.37 0.00 46.87 3.41
2398 5489 5.612725 TCTGTATATGGTGATGCAGACAA 57.387 39.130 0.00 0.00 41.76 3.18
2399 5490 6.178607 TCTGTATATGGTGATGCAGACAAT 57.821 37.500 0.00 0.00 41.76 2.71
2400 5491 7.301868 TCTGTATATGGTGATGCAGACAATA 57.698 36.000 0.00 0.00 41.76 1.90
2401 5492 7.734942 TCTGTATATGGTGATGCAGACAATAA 58.265 34.615 0.00 0.00 41.76 1.40
2402 5493 8.377799 TCTGTATATGGTGATGCAGACAATAAT 58.622 33.333 0.00 0.00 41.76 1.28
2403 5494 8.326680 TGTATATGGTGATGCAGACAATAATG 57.673 34.615 0.00 0.00 0.00 1.90
2404 5495 6.829229 ATATGGTGATGCAGACAATAATGG 57.171 37.500 0.00 0.00 0.00 3.16
2405 5496 3.289836 TGGTGATGCAGACAATAATGGG 58.710 45.455 0.00 0.00 0.00 4.00
2406 5497 2.624838 GGTGATGCAGACAATAATGGGG 59.375 50.000 0.00 0.00 0.00 4.96
2407 5498 2.624838 GTGATGCAGACAATAATGGGGG 59.375 50.000 0.00 0.00 0.00 5.40
2408 5499 2.244510 TGATGCAGACAATAATGGGGGT 59.755 45.455 0.00 0.00 0.00 4.95
2409 5500 2.917713 TGCAGACAATAATGGGGGTT 57.082 45.000 0.00 0.00 0.00 4.11
2410 5501 3.182887 TGCAGACAATAATGGGGGTTT 57.817 42.857 0.00 0.00 0.00 3.27
2411 5502 2.830923 TGCAGACAATAATGGGGGTTTG 59.169 45.455 0.00 0.00 0.00 2.93
2412 5503 2.418609 GCAGACAATAATGGGGGTTTGC 60.419 50.000 0.00 0.00 34.84 3.68
2413 5504 2.168313 CAGACAATAATGGGGGTTTGCC 59.832 50.000 0.00 0.00 0.00 4.52
2414 5505 2.183679 GACAATAATGGGGGTTTGCCA 58.816 47.619 0.00 0.00 36.17 4.92
2415 5506 2.569404 GACAATAATGGGGGTTTGCCAA 59.431 45.455 0.00 0.00 36.17 4.52
2416 5507 2.571202 ACAATAATGGGGGTTTGCCAAG 59.429 45.455 0.00 0.00 36.17 3.61
2417 5508 2.836981 CAATAATGGGGGTTTGCCAAGA 59.163 45.455 0.00 0.00 36.17 3.02
2418 5509 1.931635 TAATGGGGGTTTGCCAAGAC 58.068 50.000 0.00 0.00 36.17 3.01
2419 5510 0.105246 AATGGGGGTTTGCCAAGACA 60.105 50.000 0.00 0.00 36.17 3.41
2420 5511 0.542702 ATGGGGGTTTGCCAAGACAG 60.543 55.000 0.00 0.00 36.17 3.51
2421 5512 1.152546 GGGGGTTTGCCAAGACAGT 60.153 57.895 0.00 0.00 36.17 3.55
2422 5513 1.463553 GGGGGTTTGCCAAGACAGTG 61.464 60.000 0.00 0.00 36.17 3.66
2423 5514 1.463553 GGGGTTTGCCAAGACAGTGG 61.464 60.000 0.00 0.00 42.05 4.00
2424 5515 0.755327 GGGTTTGCCAAGACAGTGGT 60.755 55.000 0.00 0.00 41.12 4.16
2425 5516 0.668535 GGTTTGCCAAGACAGTGGTC 59.331 55.000 0.00 0.00 41.12 4.02
2426 5517 1.388547 GTTTGCCAAGACAGTGGTCA 58.611 50.000 0.00 0.00 46.80 4.02
2427 5518 1.748493 GTTTGCCAAGACAGTGGTCAA 59.252 47.619 0.00 0.00 46.80 3.18
2428 5519 2.136298 TTGCCAAGACAGTGGTCAAA 57.864 45.000 0.00 0.00 46.80 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.044305 GTGAGGTGGTGCAGCGAC 61.044 66.667 11.91 10.30 36.92 5.19
12 13 3.110178 GCGTACGTGAGGTGGTGC 61.110 66.667 17.90 0.00 0.00 5.01
38 39 2.113243 GAAGAAGGGACTGGGCGTGT 62.113 60.000 0.00 0.00 40.86 4.49
41 42 0.391793 GAAGAAGAAGGGACTGGGCG 60.392 60.000 0.00 0.00 40.86 6.13
45 46 2.027653 GTGAGGGAAGAAGAAGGGACTG 60.028 54.545 0.00 0.00 40.86 3.51
50 51 1.981495 ACTGGTGAGGGAAGAAGAAGG 59.019 52.381 0.00 0.00 0.00 3.46
66 67 5.978814 ACTAACAGAATGCCTTAGTACTGG 58.021 41.667 5.39 0.00 42.53 4.00
67 68 6.631016 TGACTAACAGAATGCCTTAGTACTG 58.369 40.000 5.39 0.00 37.82 2.74
70 71 7.476540 TCTTGACTAACAGAATGCCTTAGTA 57.523 36.000 0.00 0.00 37.82 1.82
73 2693 5.178797 GCTCTTGACTAACAGAATGCCTTA 58.821 41.667 0.00 0.00 42.53 2.69
147 2767 2.985282 CAGCAAGAGGGCCGCAAA 60.985 61.111 10.70 0.00 0.00 3.68
155 2775 1.812922 CAGCGCTACCAGCAAGAGG 60.813 63.158 10.99 0.00 42.58 3.69
167 2787 2.498726 GCTAAGGAGAGCAGCGCT 59.501 61.111 2.64 2.64 43.88 5.92
200 2820 2.281070 GATCGGCATGCCACGGAT 60.281 61.111 34.93 27.63 35.37 4.18
242 2862 3.307906 TGCTTACGCGGTGGAGGT 61.308 61.111 12.47 0.00 39.65 3.85
270 2890 1.143183 GCGAAGACGGAGGGCATAA 59.857 57.895 0.00 0.00 40.15 1.90
271 2891 1.609635 TTGCGAAGACGGAGGGCATA 61.610 55.000 0.00 0.00 41.35 3.14
282 2914 0.034896 GGAGTGGGAGTTTGCGAAGA 59.965 55.000 0.00 0.00 0.00 2.87
299 2931 3.338250 GTGGGCATGGGTGAGGGA 61.338 66.667 0.00 0.00 0.00 4.20
357 2989 0.839946 GTAGGTGGAGGGCATGACAT 59.160 55.000 0.00 0.00 0.00 3.06
362 2994 1.072266 TGTTTGTAGGTGGAGGGCAT 58.928 50.000 0.00 0.00 0.00 4.40
404 3036 2.183679 GGTGTCAGAGTCTGAGGGATT 58.816 52.381 23.27 0.00 41.46 3.01
406 3038 0.609406 CGGTGTCAGAGTCTGAGGGA 60.609 60.000 23.27 7.65 41.46 4.20
410 3042 0.900182 ATGCCGGTGTCAGAGTCTGA 60.900 55.000 19.10 19.10 38.25 3.27
411 3043 0.459237 GATGCCGGTGTCAGAGTCTG 60.459 60.000 14.36 14.36 0.00 3.51
412 3044 1.893786 GATGCCGGTGTCAGAGTCT 59.106 57.895 1.90 0.00 0.00 3.24
415 3047 1.517257 GACGATGCCGGTGTCAGAG 60.517 63.158 1.90 0.00 40.78 3.35
416 3048 2.571757 GACGATGCCGGTGTCAGA 59.428 61.111 1.90 0.00 40.78 3.27
421 3053 4.838152 CAGGGGACGATGCCGGTG 62.838 72.222 1.90 0.00 40.78 4.94
422 3054 3.968837 TACAGGGGACGATGCCGGT 62.969 63.158 1.90 0.00 40.78 5.28
423 3055 2.040009 ATTACAGGGGACGATGCCGG 62.040 60.000 0.00 0.00 40.78 6.13
424 3056 0.600255 GATTACAGGGGACGATGCCG 60.600 60.000 0.00 0.00 42.50 5.69
425 3057 0.250338 GGATTACAGGGGACGATGCC 60.250 60.000 0.00 0.00 0.00 4.40
426 3058 0.250338 GGGATTACAGGGGACGATGC 60.250 60.000 0.00 0.00 0.00 3.91
427 3059 1.128200 TGGGATTACAGGGGACGATG 58.872 55.000 0.00 0.00 0.00 3.84
428 3060 1.129058 GTGGGATTACAGGGGACGAT 58.871 55.000 0.00 0.00 0.00 3.73
429 3061 0.979187 GGTGGGATTACAGGGGACGA 60.979 60.000 0.00 0.00 0.00 4.20
430 3062 1.268992 TGGTGGGATTACAGGGGACG 61.269 60.000 0.00 0.00 0.00 4.79
431 3063 0.996583 TTGGTGGGATTACAGGGGAC 59.003 55.000 0.00 0.00 0.00 4.46
432 3064 1.994399 ATTGGTGGGATTACAGGGGA 58.006 50.000 0.00 0.00 0.00 4.81
433 3065 2.158519 GGTATTGGTGGGATTACAGGGG 60.159 54.545 0.00 0.00 0.00 4.79
434 3066 2.512056 TGGTATTGGTGGGATTACAGGG 59.488 50.000 0.00 0.00 0.00 4.45
435 3067 3.943671 TGGTATTGGTGGGATTACAGG 57.056 47.619 0.00 0.00 0.00 4.00
436 3068 4.401202 GGTTTGGTATTGGTGGGATTACAG 59.599 45.833 0.00 0.00 0.00 2.74
437 3069 4.345854 GGTTTGGTATTGGTGGGATTACA 58.654 43.478 0.00 0.00 0.00 2.41
438 3070 3.702548 GGGTTTGGTATTGGTGGGATTAC 59.297 47.826 0.00 0.00 0.00 1.89
439 3071 3.598782 AGGGTTTGGTATTGGTGGGATTA 59.401 43.478 0.00 0.00 0.00 1.75
440 3072 2.385417 AGGGTTTGGTATTGGTGGGATT 59.615 45.455 0.00 0.00 0.00 3.01
441 3073 2.007636 AGGGTTTGGTATTGGTGGGAT 58.992 47.619 0.00 0.00 0.00 3.85
442 3074 1.462426 AGGGTTTGGTATTGGTGGGA 58.538 50.000 0.00 0.00 0.00 4.37
443 3075 2.041891 TGTAGGGTTTGGTATTGGTGGG 59.958 50.000 0.00 0.00 0.00 4.61
444 3076 3.443145 TGTAGGGTTTGGTATTGGTGG 57.557 47.619 0.00 0.00 0.00 4.61
445 3077 4.403734 AGTTGTAGGGTTTGGTATTGGTG 58.596 43.478 0.00 0.00 0.00 4.17
446 3078 4.507869 GGAGTTGTAGGGTTTGGTATTGGT 60.508 45.833 0.00 0.00 0.00 3.67
457 3089 2.643232 GGCGTCGGAGTTGTAGGGT 61.643 63.158 0.00 0.00 0.00 4.34
481 3113 2.102252 GGTGTTGGAGAGATAGGAGCTG 59.898 54.545 0.00 0.00 0.00 4.24
482 3114 2.292521 TGGTGTTGGAGAGATAGGAGCT 60.293 50.000 0.00 0.00 0.00 4.09
485 3117 2.838202 GGTTGGTGTTGGAGAGATAGGA 59.162 50.000 0.00 0.00 0.00 2.94
488 3120 1.913419 GGGGTTGGTGTTGGAGAGATA 59.087 52.381 0.00 0.00 0.00 1.98
489 3121 0.698818 GGGGTTGGTGTTGGAGAGAT 59.301 55.000 0.00 0.00 0.00 2.75
510 3142 2.663852 CGTCGGTGTTGGGGTCAC 60.664 66.667 0.00 0.00 35.36 3.67
527 3159 0.108585 TTGGTGTTGGAGAGACAGGC 59.891 55.000 0.00 0.00 0.00 4.85
553 3212 4.489771 GGGTCGGTGATGGGGCTG 62.490 72.222 0.00 0.00 0.00 4.85
921 3580 1.597027 CGTTGGTGTCACAGGGGTC 60.597 63.158 5.12 0.00 0.00 4.46
924 3583 2.978010 GGCGTTGGTGTCACAGGG 60.978 66.667 5.12 0.00 0.00 4.45
925 3584 3.345808 CGGCGTTGGTGTCACAGG 61.346 66.667 5.12 0.00 0.00 4.00
942 4028 2.034221 GAGTCAGGGGTTGGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
948 4034 2.058675 CGTTGGAGAGTCAGGGGTT 58.941 57.895 0.00 0.00 0.00 4.11
956 4042 1.371558 GGAGTTGGCGTTGGAGAGT 59.628 57.895 0.00 0.00 0.00 3.24
997 4083 2.983030 TGGTGTTGGCGGCATCAC 60.983 61.111 33.36 33.36 0.00 3.06
1015 4101 2.928396 AGTCGGAACCACAGGGGG 60.928 66.667 0.00 0.00 42.91 5.40
1024 4110 2.432628 CGGTGCTGGAGTCGGAAC 60.433 66.667 0.00 0.00 0.00 3.62
1025 4111 2.599281 TCGGTGCTGGAGTCGGAA 60.599 61.111 0.00 0.00 0.00 4.30
1032 4118 2.927856 ACATGGGTCGGTGCTGGA 60.928 61.111 0.00 0.00 0.00 3.86
1041 4127 0.741221 GCGTTGGAGAGACATGGGTC 60.741 60.000 0.00 0.00 44.66 4.46
1046 4132 1.207329 GGGTTAGCGTTGGAGAGACAT 59.793 52.381 0.00 0.00 0.00 3.06
1106 4192 2.200370 TCGGAGTCACAGGGGTGT 59.800 61.111 0.00 0.00 45.45 4.16
1209 4295 1.808531 GCAACAGCCCATTGAGCACA 61.809 55.000 0.00 0.00 0.00 4.57
1244 4330 1.345741 AGCATGTATCGCTGGTGCTAT 59.654 47.619 0.00 0.00 43.69 2.97
1409 4495 0.321298 TTAGTTCGGGCAGTGGAAGC 60.321 55.000 0.00 0.00 0.00 3.86
1477 4563 5.294356 AGAATTTAAGGCACGTATCGCATA 58.706 37.500 0.00 0.00 0.00 3.14
1530 4616 9.435688 GTCCATGTGCATATAGATTATTACACA 57.564 33.333 0.00 0.00 40.65 3.72
1548 4634 0.803117 CAGAGCTGCAAGTCCATGTG 59.197 55.000 1.02 0.00 35.30 3.21
1556 4642 1.731160 GTAGCAAGTCAGAGCTGCAAG 59.269 52.381 1.02 0.00 42.10 4.01
1622 4711 9.902196 CATGTTACACGGTAACTATATGATACA 57.098 33.333 20.34 5.13 0.00 2.29
1705 4795 6.267500 ACGCAACACAAACATTTTATTCAC 57.733 33.333 0.00 0.00 0.00 3.18
1719 4809 7.027760 TGTGAAAACTTTATTTACGCAACACA 58.972 30.769 0.00 0.00 0.00 3.72
1722 4812 8.056710 ACATGTGAAAACTTTATTTACGCAAC 57.943 30.769 0.00 0.00 0.00 4.17
1723 4813 9.171701 GTACATGTGAAAACTTTATTTACGCAA 57.828 29.630 9.11 0.00 0.00 4.85
1733 4823 8.215736 AGGGTTACTAGTACATGTGAAAACTTT 58.784 33.333 9.11 0.00 0.00 2.66
1758 4849 7.957484 CGTATGATTCAACAAGTTTCTTGGTAG 59.043 37.037 12.95 3.51 0.00 3.18
1767 4858 4.917415 GCAAAGCGTATGATTCAACAAGTT 59.083 37.500 0.00 0.00 0.00 2.66
1831 4922 6.493978 CATATGTGTGTTTGTTCTGTGTTCA 58.506 36.000 0.00 0.00 0.00 3.18
1834 4925 4.337836 TGCATATGTGTGTTTGTTCTGTGT 59.662 37.500 4.29 0.00 0.00 3.72
1835 4926 4.676471 GTGCATATGTGTGTTTGTTCTGTG 59.324 41.667 4.29 0.00 0.00 3.66
1836 4927 4.337836 TGTGCATATGTGTGTTTGTTCTGT 59.662 37.500 4.29 0.00 0.00 3.41
1837 4928 4.676471 GTGTGCATATGTGTGTTTGTTCTG 59.324 41.667 4.29 0.00 0.00 3.02
1838 4929 4.337836 TGTGTGCATATGTGTGTTTGTTCT 59.662 37.500 4.29 0.00 0.00 3.01
1839 4930 4.440758 GTGTGTGCATATGTGTGTTTGTTC 59.559 41.667 4.29 0.00 0.00 3.18
1840 4931 4.142293 TGTGTGTGCATATGTGTGTTTGTT 60.142 37.500 4.29 0.00 0.00 2.83
1841 4932 3.379688 TGTGTGTGCATATGTGTGTTTGT 59.620 39.130 4.29 0.00 0.00 2.83
1842 4933 3.730215 GTGTGTGTGCATATGTGTGTTTG 59.270 43.478 4.29 0.00 0.00 2.93
1843 4934 3.379688 TGTGTGTGTGCATATGTGTGTTT 59.620 39.130 4.29 0.00 0.00 2.83
1844 4935 2.948315 TGTGTGTGTGCATATGTGTGTT 59.052 40.909 4.29 0.00 0.00 3.32
1845 4936 2.290367 GTGTGTGTGTGCATATGTGTGT 59.710 45.455 4.29 0.00 0.00 3.72
1846 4937 2.290093 TGTGTGTGTGTGCATATGTGTG 59.710 45.455 4.29 0.00 0.00 3.82
1847 4938 2.290367 GTGTGTGTGTGTGCATATGTGT 59.710 45.455 4.29 0.00 0.00 3.72
1848 4939 2.662520 CGTGTGTGTGTGTGCATATGTG 60.663 50.000 4.29 0.00 0.00 3.21
1849 4940 1.530720 CGTGTGTGTGTGTGCATATGT 59.469 47.619 4.29 0.00 0.00 2.29
1850 4941 1.725611 GCGTGTGTGTGTGTGCATATG 60.726 52.381 0.00 0.00 0.00 1.78
1851 4942 0.516877 GCGTGTGTGTGTGTGCATAT 59.483 50.000 0.00 0.00 0.00 1.78
1852 4943 0.811616 TGCGTGTGTGTGTGTGCATA 60.812 50.000 0.00 0.00 0.00 3.14
1853 4944 2.111582 TGCGTGTGTGTGTGTGCAT 61.112 52.632 0.00 0.00 0.00 3.96
1854 4945 2.743928 TGCGTGTGTGTGTGTGCA 60.744 55.556 0.00 0.00 0.00 4.57
1855 4946 2.277247 GTGCGTGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
1856 4947 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1891 4982 4.649954 GTGTCTGTGTGTGCGCGC 62.650 66.667 27.26 27.26 0.00 6.86
1892 4983 3.261216 TGTGTCTGTGTGTGCGCG 61.261 61.111 0.00 0.00 0.00 6.86
1893 4984 1.976478 TTGTGTGTCTGTGTGTGCGC 61.976 55.000 0.00 0.00 0.00 6.09
1894 4985 0.445829 TTTGTGTGTCTGTGTGTGCG 59.554 50.000 0.00 0.00 0.00 5.34
1895 4986 2.849880 ATTTGTGTGTCTGTGTGTGC 57.150 45.000 0.00 0.00 0.00 4.57
1896 4987 8.904712 CATTATAAATTTGTGTGTCTGTGTGTG 58.095 33.333 0.00 0.00 0.00 3.82
1897 4988 8.081633 CCATTATAAATTTGTGTGTCTGTGTGT 58.918 33.333 0.00 0.00 0.00 3.72
1898 4989 8.081633 ACCATTATAAATTTGTGTGTCTGTGTG 58.918 33.333 0.00 0.00 0.00 3.82
1899 4990 8.177119 ACCATTATAAATTTGTGTGTCTGTGT 57.823 30.769 0.00 0.00 0.00 3.72
1900 4991 9.474920 AAACCATTATAAATTTGTGTGTCTGTG 57.525 29.630 0.00 0.00 0.00 3.66
1901 4992 9.474920 CAAACCATTATAAATTTGTGTGTCTGT 57.525 29.630 0.00 0.00 0.00 3.41
1902 4993 8.434661 GCAAACCATTATAAATTTGTGTGTCTG 58.565 33.333 15.82 0.00 35.06 3.51
1903 4994 8.147058 TGCAAACCATTATAAATTTGTGTGTCT 58.853 29.630 15.82 0.00 35.06 3.41
1904 4995 8.304202 TGCAAACCATTATAAATTTGTGTGTC 57.696 30.769 15.82 5.62 35.06 3.67
1905 4996 8.719648 CATGCAAACCATTATAAATTTGTGTGT 58.280 29.630 15.82 0.00 35.06 3.72
1906 4997 8.719648 ACATGCAAACCATTATAAATTTGTGTG 58.280 29.630 15.82 15.65 35.06 3.82
1907 4998 8.845413 ACATGCAAACCATTATAAATTTGTGT 57.155 26.923 15.82 12.20 35.06 3.72
1917 5008 9.100554 CATTGACAAATACATGCAAACCATTAT 57.899 29.630 0.00 0.00 29.71 1.28
1918 5009 8.309656 TCATTGACAAATACATGCAAACCATTA 58.690 29.630 0.00 0.00 29.71 1.90
1919 5010 7.160049 TCATTGACAAATACATGCAAACCATT 58.840 30.769 0.00 0.00 29.71 3.16
1920 5011 6.699366 TCATTGACAAATACATGCAAACCAT 58.301 32.000 0.00 0.00 33.39 3.55
1921 5012 6.094193 TCATTGACAAATACATGCAAACCA 57.906 33.333 0.00 0.00 0.00 3.67
1922 5013 7.436080 CCTATCATTGACAAATACATGCAAACC 59.564 37.037 0.00 0.00 0.00 3.27
1923 5014 8.190122 TCCTATCATTGACAAATACATGCAAAC 58.810 33.333 0.00 0.00 0.00 2.93
1924 5015 8.291191 TCCTATCATTGACAAATACATGCAAA 57.709 30.769 0.00 0.00 0.00 3.68
1925 5016 7.557358 ACTCCTATCATTGACAAATACATGCAA 59.443 33.333 0.00 0.00 0.00 4.08
1926 5017 7.056006 ACTCCTATCATTGACAAATACATGCA 58.944 34.615 0.00 0.00 0.00 3.96
1927 5018 7.502120 ACTCCTATCATTGACAAATACATGC 57.498 36.000 0.00 0.00 0.00 4.06
1928 5019 9.112725 TGAACTCCTATCATTGACAAATACATG 57.887 33.333 0.00 0.00 0.00 3.21
1929 5020 9.685276 TTGAACTCCTATCATTGACAAATACAT 57.315 29.630 0.00 0.00 0.00 2.29
1930 5021 9.513906 TTTGAACTCCTATCATTGACAAATACA 57.486 29.630 0.00 0.00 0.00 2.29
1933 5024 9.865321 CATTTTGAACTCCTATCATTGACAAAT 57.135 29.630 0.00 0.00 0.00 2.32
1934 5025 8.859090 ACATTTTGAACTCCTATCATTGACAAA 58.141 29.630 0.00 0.00 0.00 2.83
1935 5026 8.408043 ACATTTTGAACTCCTATCATTGACAA 57.592 30.769 0.00 0.00 0.00 3.18
1936 5027 9.685276 ATACATTTTGAACTCCTATCATTGACA 57.315 29.630 0.00 0.00 0.00 3.58
1942 5033 9.878667 TTCGTTATACATTTTGAACTCCTATCA 57.121 29.630 0.00 0.00 0.00 2.15
1945 5036 9.932207 TTCTTCGTTATACATTTTGAACTCCTA 57.068 29.630 0.00 0.00 0.00 2.94
1946 5037 8.718734 GTTCTTCGTTATACATTTTGAACTCCT 58.281 33.333 0.00 0.00 0.00 3.69
1947 5038 8.500773 TGTTCTTCGTTATACATTTTGAACTCC 58.499 33.333 0.00 0.00 34.31 3.85
1948 5039 9.314501 GTGTTCTTCGTTATACATTTTGAACTC 57.685 33.333 0.00 0.00 34.31 3.01
1949 5040 9.052759 AGTGTTCTTCGTTATACATTTTGAACT 57.947 29.630 0.00 0.00 34.31 3.01
1950 5041 9.103048 CAGTGTTCTTCGTTATACATTTTGAAC 57.897 33.333 0.00 0.00 33.94 3.18
1951 5042 8.832521 ACAGTGTTCTTCGTTATACATTTTGAA 58.167 29.630 0.00 0.00 0.00 2.69
1952 5043 8.373048 ACAGTGTTCTTCGTTATACATTTTGA 57.627 30.769 0.00 0.00 0.00 2.69
1955 5046 9.485206 ACTTACAGTGTTCTTCGTTATACATTT 57.515 29.630 0.00 0.00 0.00 2.32
1958 5049 9.964303 TTTACTTACAGTGTTCTTCGTTATACA 57.036 29.630 0.00 0.00 0.00 2.29
1961 5052 9.538508 AGTTTTACTTACAGTGTTCTTCGTTAT 57.461 29.630 0.00 0.00 0.00 1.89
1962 5053 8.931385 AGTTTTACTTACAGTGTTCTTCGTTA 57.069 30.769 0.00 0.00 0.00 3.18
1963 5054 7.838771 AGTTTTACTTACAGTGTTCTTCGTT 57.161 32.000 0.00 0.00 0.00 3.85
1964 5055 7.838771 AAGTTTTACTTACAGTGTTCTTCGT 57.161 32.000 0.00 0.00 36.52 3.85
2045 5136 1.202348 GCCCTCGCAATGCTAGTTTTT 59.798 47.619 2.94 0.00 34.03 1.94
2046 5137 0.811281 GCCCTCGCAATGCTAGTTTT 59.189 50.000 2.94 0.00 34.03 2.43
2047 5138 0.322456 TGCCCTCGCAATGCTAGTTT 60.322 50.000 2.94 0.00 43.74 2.66
2048 5139 1.299648 TGCCCTCGCAATGCTAGTT 59.700 52.632 2.94 0.00 43.74 2.24
2049 5140 2.989639 TGCCCTCGCAATGCTAGT 59.010 55.556 2.94 0.00 43.74 2.57
2058 5149 1.453155 TTTGAAGAAGATGCCCTCGC 58.547 50.000 0.00 0.00 0.00 5.03
2059 5150 4.320057 GCATATTTGAAGAAGATGCCCTCG 60.320 45.833 7.02 0.00 37.52 4.63
2060 5151 4.581824 TGCATATTTGAAGAAGATGCCCTC 59.418 41.667 13.70 0.00 41.76 4.30
2061 5152 4.539726 TGCATATTTGAAGAAGATGCCCT 58.460 39.130 13.70 0.00 41.76 5.19
2062 5153 4.924305 TGCATATTTGAAGAAGATGCCC 57.076 40.909 13.70 0.00 41.76 5.36
2063 5154 4.684703 GCATGCATATTTGAAGAAGATGCC 59.315 41.667 14.21 0.00 41.76 4.40
2064 5155 5.286438 TGCATGCATATTTGAAGAAGATGC 58.714 37.500 18.46 10.46 42.57 3.91
2065 5156 7.946655 ATTGCATGCATATTTGAAGAAGATG 57.053 32.000 23.37 0.00 0.00 2.90
2066 5157 8.857098 AGTATTGCATGCATATTTGAAGAAGAT 58.143 29.630 23.37 9.49 0.00 2.40
2067 5158 8.229253 AGTATTGCATGCATATTTGAAGAAGA 57.771 30.769 23.37 1.12 0.00 2.87
2112 5203 7.068226 AGCATAACATTGGAGGTGGTTATAAAC 59.932 37.037 0.00 0.00 35.35 2.01
2113 5204 7.122715 AGCATAACATTGGAGGTGGTTATAAA 58.877 34.615 0.00 0.00 35.35 1.40
2114 5205 6.668645 AGCATAACATTGGAGGTGGTTATAA 58.331 36.000 0.00 0.00 35.35 0.98
2115 5206 6.260700 AGCATAACATTGGAGGTGGTTATA 57.739 37.500 0.00 0.00 35.35 0.98
2116 5207 5.129368 AGCATAACATTGGAGGTGGTTAT 57.871 39.130 0.00 0.00 37.01 1.89
2117 5208 4.584638 AGCATAACATTGGAGGTGGTTA 57.415 40.909 0.00 0.00 0.00 2.85
2118 5209 3.456380 AGCATAACATTGGAGGTGGTT 57.544 42.857 0.00 0.00 0.00 3.67
2119 5210 4.584638 TTAGCATAACATTGGAGGTGGT 57.415 40.909 0.00 0.00 0.00 4.16
2120 5211 4.704540 TGTTTAGCATAACATTGGAGGTGG 59.295 41.667 0.09 0.00 33.31 4.61
2121 5212 5.182950 TGTGTTTAGCATAACATTGGAGGTG 59.817 40.000 6.88 0.00 39.93 4.00
2122 5213 5.321102 TGTGTTTAGCATAACATTGGAGGT 58.679 37.500 6.88 0.00 39.93 3.85
2123 5214 5.895636 TGTGTTTAGCATAACATTGGAGG 57.104 39.130 6.88 0.00 39.93 4.30
2124 5215 9.669353 GATATTGTGTTTAGCATAACATTGGAG 57.331 33.333 6.88 0.00 39.93 3.86
2125 5216 9.183368 TGATATTGTGTTTAGCATAACATTGGA 57.817 29.630 6.88 0.00 39.93 3.53
2126 5217 9.970395 ATGATATTGTGTTTAGCATAACATTGG 57.030 29.630 6.88 0.00 39.93 3.16
2128 5219 9.467258 GCATGATATTGTGTTTAGCATAACATT 57.533 29.630 0.00 0.22 39.93 2.71
2129 5220 8.631797 TGCATGATATTGTGTTTAGCATAACAT 58.368 29.630 0.00 0.00 39.93 2.71
2130 5221 7.994194 TGCATGATATTGTGTTTAGCATAACA 58.006 30.769 0.00 0.09 35.75 2.41
2131 5222 7.592533 CCTGCATGATATTGTGTTTAGCATAAC 59.407 37.037 0.00 0.00 31.06 1.89
2132 5223 7.255555 CCCTGCATGATATTGTGTTTAGCATAA 60.256 37.037 0.00 0.00 32.81 1.90
2133 5224 6.207221 CCCTGCATGATATTGTGTTTAGCATA 59.793 38.462 0.00 0.00 0.00 3.14
2134 5225 5.010314 CCCTGCATGATATTGTGTTTAGCAT 59.990 40.000 0.00 0.00 0.00 3.79
2135 5226 4.338964 CCCTGCATGATATTGTGTTTAGCA 59.661 41.667 0.00 0.00 0.00 3.49
2136 5227 4.580167 TCCCTGCATGATATTGTGTTTAGC 59.420 41.667 0.00 0.00 0.00 3.09
2137 5228 6.698008 TTCCCTGCATGATATTGTGTTTAG 57.302 37.500 0.00 0.00 0.00 1.85
2138 5229 8.938801 ATATTCCCTGCATGATATTGTGTTTA 57.061 30.769 0.00 0.00 0.00 2.01
2139 5230 7.727186 AGATATTCCCTGCATGATATTGTGTTT 59.273 33.333 0.00 0.00 0.00 2.83
2140 5231 7.236529 AGATATTCCCTGCATGATATTGTGTT 58.763 34.615 0.00 0.00 0.00 3.32
2141 5232 6.787170 AGATATTCCCTGCATGATATTGTGT 58.213 36.000 0.00 0.00 0.00 3.72
2142 5233 7.698506 AAGATATTCCCTGCATGATATTGTG 57.301 36.000 0.00 0.00 0.00 3.33
2143 5234 9.986157 ATTAAGATATTCCCTGCATGATATTGT 57.014 29.630 0.00 0.00 0.00 2.71
2196 5287 9.575868 TGTGGTGTTCTTGTAAGGATATAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
2197 5288 9.005777 GTGTGGTGTTCTTGTAAGGATATAAAA 57.994 33.333 0.00 0.00 0.00 1.52
2198 5289 8.380099 AGTGTGGTGTTCTTGTAAGGATATAAA 58.620 33.333 0.00 0.00 0.00 1.40
2199 5290 7.913789 AGTGTGGTGTTCTTGTAAGGATATAA 58.086 34.615 0.00 0.00 0.00 0.98
2200 5291 7.490657 AGTGTGGTGTTCTTGTAAGGATATA 57.509 36.000 0.00 0.00 0.00 0.86
2201 5292 6.374417 AGTGTGGTGTTCTTGTAAGGATAT 57.626 37.500 0.00 0.00 0.00 1.63
2202 5293 5.818678 AGTGTGGTGTTCTTGTAAGGATA 57.181 39.130 0.00 0.00 0.00 2.59
2203 5294 4.706842 AGTGTGGTGTTCTTGTAAGGAT 57.293 40.909 0.00 0.00 0.00 3.24
2204 5295 5.129815 ACTTAGTGTGGTGTTCTTGTAAGGA 59.870 40.000 0.00 0.00 0.00 3.36
2205 5296 5.365619 ACTTAGTGTGGTGTTCTTGTAAGG 58.634 41.667 0.00 0.00 0.00 2.69
2206 5297 7.061905 CGATACTTAGTGTGGTGTTCTTGTAAG 59.938 40.741 0.00 0.00 0.00 2.34
2207 5298 6.864685 CGATACTTAGTGTGGTGTTCTTGTAA 59.135 38.462 0.00 0.00 0.00 2.41
2208 5299 6.384224 CGATACTTAGTGTGGTGTTCTTGTA 58.616 40.000 0.00 0.00 0.00 2.41
2209 5300 5.227908 CGATACTTAGTGTGGTGTTCTTGT 58.772 41.667 0.00 0.00 0.00 3.16
2210 5301 4.091509 GCGATACTTAGTGTGGTGTTCTTG 59.908 45.833 0.00 0.00 0.00 3.02
2211 5302 4.243270 GCGATACTTAGTGTGGTGTTCTT 58.757 43.478 0.00 0.00 0.00 2.52
2212 5303 3.257375 TGCGATACTTAGTGTGGTGTTCT 59.743 43.478 0.00 0.00 0.00 3.01
2213 5304 3.581755 TGCGATACTTAGTGTGGTGTTC 58.418 45.455 0.00 0.00 0.00 3.18
2214 5305 3.671008 TGCGATACTTAGTGTGGTGTT 57.329 42.857 0.00 0.00 0.00 3.32
2215 5306 3.056107 ACATGCGATACTTAGTGTGGTGT 60.056 43.478 0.00 0.00 0.00 4.16
2216 5307 3.521560 ACATGCGATACTTAGTGTGGTG 58.478 45.455 0.00 0.00 0.00 4.17
2217 5308 3.887621 ACATGCGATACTTAGTGTGGT 57.112 42.857 0.00 0.00 0.00 4.16
2218 5309 5.753438 ACAATACATGCGATACTTAGTGTGG 59.247 40.000 0.00 0.00 0.00 4.17
2219 5310 6.828502 ACAATACATGCGATACTTAGTGTG 57.171 37.500 0.00 0.00 0.00 3.82
2220 5311 6.238103 GCAACAATACATGCGATACTTAGTGT 60.238 38.462 0.00 0.00 32.17 3.55
2221 5312 6.129393 GCAACAATACATGCGATACTTAGTG 58.871 40.000 0.00 0.00 32.17 2.74
2222 5313 5.236478 GGCAACAATACATGCGATACTTAGT 59.764 40.000 0.00 0.00 43.47 2.24
2223 5314 5.466728 AGGCAACAATACATGCGATACTTAG 59.533 40.000 0.00 0.00 43.47 2.18
2224 5315 5.364778 AGGCAACAATACATGCGATACTTA 58.635 37.500 0.00 0.00 43.47 2.24
2225 5316 4.199310 AGGCAACAATACATGCGATACTT 58.801 39.130 0.00 0.00 43.47 2.24
2226 5317 3.808728 AGGCAACAATACATGCGATACT 58.191 40.909 0.00 0.00 43.47 2.12
2227 5318 4.552166 AAGGCAACAATACATGCGATAC 57.448 40.909 0.00 0.00 43.47 2.24
2228 5319 4.397730 ACAAAGGCAACAATACATGCGATA 59.602 37.500 0.00 0.00 43.47 2.92
2229 5320 3.193267 ACAAAGGCAACAATACATGCGAT 59.807 39.130 0.00 0.00 43.47 4.58
2230 5321 2.556189 ACAAAGGCAACAATACATGCGA 59.444 40.909 0.00 0.00 43.47 5.10
2231 5322 2.945278 ACAAAGGCAACAATACATGCG 58.055 42.857 0.00 0.00 43.47 4.73
2232 5323 5.106157 ACTCTACAAAGGCAACAATACATGC 60.106 40.000 0.00 0.00 41.82 4.06
2233 5324 6.500684 ACTCTACAAAGGCAACAATACATG 57.499 37.500 0.00 0.00 41.41 3.21
2234 5325 8.807948 AATACTCTACAAAGGCAACAATACAT 57.192 30.769 0.00 0.00 41.41 2.29
2235 5326 9.378551 CTAATACTCTACAAAGGCAACAATACA 57.621 33.333 0.00 0.00 41.41 2.29
2236 5327 9.595823 TCTAATACTCTACAAAGGCAACAATAC 57.404 33.333 0.00 0.00 41.41 1.89
2238 5329 9.113838 CATCTAATACTCTACAAAGGCAACAAT 57.886 33.333 0.00 0.00 41.41 2.71
2239 5330 8.318412 TCATCTAATACTCTACAAAGGCAACAA 58.682 33.333 0.00 0.00 41.41 2.83
2240 5331 7.847096 TCATCTAATACTCTACAAAGGCAACA 58.153 34.615 0.00 0.00 41.41 3.33
2241 5332 8.198109 TCTCATCTAATACTCTACAAAGGCAAC 58.802 37.037 0.00 0.00 0.00 4.17
2242 5333 8.306313 TCTCATCTAATACTCTACAAAGGCAA 57.694 34.615 0.00 0.00 0.00 4.52
2243 5334 7.898014 TCTCATCTAATACTCTACAAAGGCA 57.102 36.000 0.00 0.00 0.00 4.75
2244 5335 9.036671 GTTTCTCATCTAATACTCTACAAAGGC 57.963 37.037 0.00 0.00 0.00 4.35
2260 5351 9.381033 CACAATCTGAAGATTAGTTTCTCATCT 57.619 33.333 5.26 0.00 42.41 2.90
2261 5352 9.376075 TCACAATCTGAAGATTAGTTTCTCATC 57.624 33.333 5.26 0.00 42.41 2.92
2262 5353 9.381033 CTCACAATCTGAAGATTAGTTTCTCAT 57.619 33.333 5.26 0.00 42.41 2.90
2263 5354 7.821359 CCTCACAATCTGAAGATTAGTTTCTCA 59.179 37.037 5.26 0.00 42.41 3.27
2264 5355 7.201600 GCCTCACAATCTGAAGATTAGTTTCTC 60.202 40.741 5.26 0.00 42.41 2.87
2265 5356 6.597280 GCCTCACAATCTGAAGATTAGTTTCT 59.403 38.462 5.26 0.00 42.41 2.52
2266 5357 6.372659 TGCCTCACAATCTGAAGATTAGTTTC 59.627 38.462 5.26 0.00 42.41 2.78
2267 5358 6.240894 TGCCTCACAATCTGAAGATTAGTTT 58.759 36.000 5.26 0.00 42.41 2.66
2268 5359 5.809001 TGCCTCACAATCTGAAGATTAGTT 58.191 37.500 5.26 0.00 42.41 2.24
2269 5360 5.426689 TGCCTCACAATCTGAAGATTAGT 57.573 39.130 5.26 4.33 42.41 2.24
2270 5361 5.879223 AGTTGCCTCACAATCTGAAGATTAG 59.121 40.000 5.26 2.56 42.41 1.73
2271 5362 5.809001 AGTTGCCTCACAATCTGAAGATTA 58.191 37.500 5.26 0.00 42.41 1.75
2272 5363 4.660168 AGTTGCCTCACAATCTGAAGATT 58.340 39.130 0.00 0.00 44.93 2.40
2273 5364 4.298103 AGTTGCCTCACAATCTGAAGAT 57.702 40.909 0.00 0.00 41.27 2.40
2274 5365 3.777106 AGTTGCCTCACAATCTGAAGA 57.223 42.857 0.00 0.00 41.27 2.87
2275 5366 7.615582 TTAATAGTTGCCTCACAATCTGAAG 57.384 36.000 0.00 0.00 41.27 3.02
2276 5367 8.579850 AATTAATAGTTGCCTCACAATCTGAA 57.420 30.769 0.00 0.00 41.27 3.02
2277 5368 8.579850 AAATTAATAGTTGCCTCACAATCTGA 57.420 30.769 0.00 0.00 41.27 3.27
2278 5369 9.079833 CAAAATTAATAGTTGCCTCACAATCTG 57.920 33.333 0.00 0.00 41.27 2.90
2279 5370 7.761249 GCAAAATTAATAGTTGCCTCACAATCT 59.239 33.333 19.20 0.00 41.41 2.40
2280 5371 7.545265 TGCAAAATTAATAGTTGCCTCACAATC 59.455 33.333 23.73 4.80 45.60 2.67
2281 5372 7.385267 TGCAAAATTAATAGTTGCCTCACAAT 58.615 30.769 23.73 0.00 45.60 2.71
2282 5373 6.753180 TGCAAAATTAATAGTTGCCTCACAA 58.247 32.000 23.73 9.65 45.60 3.33
2283 5374 6.338214 TGCAAAATTAATAGTTGCCTCACA 57.662 33.333 23.73 10.15 45.60 3.58
2284 5375 7.331687 ACAATGCAAAATTAATAGTTGCCTCAC 59.668 33.333 23.73 6.78 45.60 3.51
2285 5376 7.331440 CACAATGCAAAATTAATAGTTGCCTCA 59.669 33.333 23.73 12.70 45.60 3.86
2286 5377 7.545265 TCACAATGCAAAATTAATAGTTGCCTC 59.455 33.333 23.73 7.28 45.60 4.70
2287 5378 7.385267 TCACAATGCAAAATTAATAGTTGCCT 58.615 30.769 23.73 16.25 45.60 4.75
2288 5379 7.593875 TCACAATGCAAAATTAATAGTTGCC 57.406 32.000 23.73 12.81 45.60 4.52
2298 5389 8.525316 TGAACTGATCTATCACAATGCAAAATT 58.475 29.630 0.00 0.00 32.50 1.82
2299 5390 8.058667 TGAACTGATCTATCACAATGCAAAAT 57.941 30.769 0.00 0.00 32.50 1.82
2300 5391 7.451501 TGAACTGATCTATCACAATGCAAAA 57.548 32.000 0.00 0.00 32.50 2.44
2301 5392 7.337436 TCATGAACTGATCTATCACAATGCAAA 59.663 33.333 0.00 0.00 32.50 3.68
2302 5393 6.824704 TCATGAACTGATCTATCACAATGCAA 59.175 34.615 0.00 0.00 32.50 4.08
2303 5394 6.350906 TCATGAACTGATCTATCACAATGCA 58.649 36.000 0.00 0.00 32.50 3.96
2304 5395 6.856135 TCATGAACTGATCTATCACAATGC 57.144 37.500 0.00 0.00 32.50 3.56
2305 5396 8.603242 TCATCATGAACTGATCTATCACAATG 57.397 34.615 0.00 4.30 42.91 2.82
2306 5397 9.623000 TTTCATCATGAACTGATCTATCACAAT 57.377 29.630 0.00 0.00 42.91 2.71
2307 5398 8.886719 GTTTCATCATGAACTGATCTATCACAA 58.113 33.333 0.00 0.00 42.91 3.33
2308 5399 8.042515 TGTTTCATCATGAACTGATCTATCACA 58.957 33.333 0.00 0.00 42.91 3.58
2309 5400 8.429493 TGTTTCATCATGAACTGATCTATCAC 57.571 34.615 0.00 0.00 42.91 3.06
2314 5405 9.848710 AATCTATGTTTCATCATGAACTGATCT 57.151 29.630 0.00 0.00 42.91 2.75
2315 5406 9.880064 CAATCTATGTTTCATCATGAACTGATC 57.120 33.333 0.00 0.00 42.91 2.92
2316 5407 9.404848 ACAATCTATGTTTCATCATGAACTGAT 57.595 29.630 0.00 0.00 41.80 2.90
2317 5408 8.797350 ACAATCTATGTTTCATCATGAACTGA 57.203 30.769 0.00 0.00 40.06 3.41
2369 5460 9.797642 TCTGCATCACCATATACAGATTTTATT 57.202 29.630 0.00 0.00 0.00 1.40
2370 5461 9.224267 GTCTGCATCACCATATACAGATTTTAT 57.776 33.333 0.00 0.00 36.62 1.40
2371 5462 8.210265 TGTCTGCATCACCATATACAGATTTTA 58.790 33.333 0.00 0.00 36.62 1.52
2372 5463 7.056006 TGTCTGCATCACCATATACAGATTTT 58.944 34.615 0.00 0.00 36.62 1.82
2373 5464 6.594744 TGTCTGCATCACCATATACAGATTT 58.405 36.000 0.00 0.00 36.62 2.17
2374 5465 6.178607 TGTCTGCATCACCATATACAGATT 57.821 37.500 0.00 0.00 36.62 2.40
2375 5466 5.813513 TGTCTGCATCACCATATACAGAT 57.186 39.130 0.00 0.00 36.62 2.90
2376 5467 5.612725 TTGTCTGCATCACCATATACAGA 57.387 39.130 0.00 0.00 0.00 3.41
2377 5468 7.967890 TTATTGTCTGCATCACCATATACAG 57.032 36.000 0.00 0.00 0.00 2.74
2378 5469 7.391275 CCATTATTGTCTGCATCACCATATACA 59.609 37.037 0.00 0.00 0.00 2.29
2379 5470 7.148188 CCCATTATTGTCTGCATCACCATATAC 60.148 40.741 0.00 0.00 0.00 1.47
2380 5471 6.885918 CCCATTATTGTCTGCATCACCATATA 59.114 38.462 0.00 0.00 0.00 0.86
2381 5472 5.713389 CCCATTATTGTCTGCATCACCATAT 59.287 40.000 0.00 0.00 0.00 1.78
2382 5473 5.072055 CCCATTATTGTCTGCATCACCATA 58.928 41.667 0.00 0.00 0.00 2.74
2383 5474 3.893200 CCCATTATTGTCTGCATCACCAT 59.107 43.478 0.00 0.00 0.00 3.55
2384 5475 3.289836 CCCATTATTGTCTGCATCACCA 58.710 45.455 0.00 0.00 0.00 4.17
2385 5476 2.624838 CCCCATTATTGTCTGCATCACC 59.375 50.000 0.00 0.00 0.00 4.02
2386 5477 2.624838 CCCCCATTATTGTCTGCATCAC 59.375 50.000 0.00 0.00 0.00 3.06
2387 5478 2.244510 ACCCCCATTATTGTCTGCATCA 59.755 45.455 0.00 0.00 0.00 3.07
2388 5479 2.949447 ACCCCCATTATTGTCTGCATC 58.051 47.619 0.00 0.00 0.00 3.91
2389 5480 3.403228 AACCCCCATTATTGTCTGCAT 57.597 42.857 0.00 0.00 0.00 3.96
2390 5481 2.830923 CAAACCCCCATTATTGTCTGCA 59.169 45.455 0.00 0.00 0.00 4.41
2391 5482 2.418609 GCAAACCCCCATTATTGTCTGC 60.419 50.000 0.00 0.00 0.00 4.26
2392 5483 2.168313 GGCAAACCCCCATTATTGTCTG 59.832 50.000 0.00 0.00 0.00 3.51
2393 5484 2.225496 TGGCAAACCCCCATTATTGTCT 60.225 45.455 0.00 0.00 33.59 3.41
2394 5485 2.183679 TGGCAAACCCCCATTATTGTC 58.816 47.619 0.00 0.00 33.59 3.18
2395 5486 2.334006 TGGCAAACCCCCATTATTGT 57.666 45.000 0.00 0.00 33.59 2.71
2396 5487 2.836981 TCTTGGCAAACCCCCATTATTG 59.163 45.455 0.00 0.00 33.59 1.90
2397 5488 2.837591 GTCTTGGCAAACCCCCATTATT 59.162 45.455 0.00 0.00 33.59 1.40
2398 5489 2.225496 TGTCTTGGCAAACCCCCATTAT 60.225 45.455 0.00 0.00 33.59 1.28
2399 5490 1.148027 TGTCTTGGCAAACCCCCATTA 59.852 47.619 0.00 0.00 33.59 1.90
2400 5491 0.105246 TGTCTTGGCAAACCCCCATT 60.105 50.000 0.00 0.00 33.59 3.16
2401 5492 0.542702 CTGTCTTGGCAAACCCCCAT 60.543 55.000 0.00 0.00 33.59 4.00
2402 5493 1.152567 CTGTCTTGGCAAACCCCCA 60.153 57.895 0.00 0.00 33.59 4.96
2403 5494 1.152546 ACTGTCTTGGCAAACCCCC 60.153 57.895 0.00 0.00 33.59 5.40
2404 5495 1.463553 CCACTGTCTTGGCAAACCCC 61.464 60.000 0.00 0.00 33.59 4.95
2405 5496 0.755327 ACCACTGTCTTGGCAAACCC 60.755 55.000 0.00 0.00 40.77 4.11
2406 5497 0.668535 GACCACTGTCTTGGCAAACC 59.331 55.000 0.00 0.00 40.77 3.27
2407 5498 1.388547 TGACCACTGTCTTGGCAAAC 58.611 50.000 0.00 3.62 42.28 2.93
2408 5499 2.136298 TTGACCACTGTCTTGGCAAA 57.864 45.000 0.00 0.00 42.28 3.68
2409 5500 2.136298 TTTGACCACTGTCTTGGCAA 57.864 45.000 0.00 0.00 42.28 4.52
2410 5501 3.892633 TTTGACCACTGTCTTGGCA 57.107 47.368 0.00 0.00 42.28 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.