Multiple sequence alignment - TraesCS7D01G019800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G019800 chr7D 100.000 4380 0 0 1 4380 8477399 8481778 0.000000e+00 8089
1 TraesCS7D01G019800 chr7D 89.506 162 16 1 4139 4299 529042230 529042069 2.070000e-48 204
2 TraesCS7D01G019800 chr7D 86.286 175 13 3 4138 4301 28214948 28214774 3.480000e-41 180
3 TraesCS7D01G019800 chr7A 92.168 3371 191 28 646 3959 8914387 8917741 0.000000e+00 4695
4 TraesCS7D01G019800 chr7A 94.724 398 10 3 1 387 8913972 8914369 3.750000e-170 608
5 TraesCS7D01G019800 chr7A 91.099 191 17 0 3936 4126 8919142 8919332 4.350000e-65 259
6 TraesCS7D01G019800 chr7A 89.375 160 15 2 4136 4295 690840716 690840873 2.670000e-47 200
7 TraesCS7D01G019800 chr7A 89.655 87 4 4 4296 4380 8919352 8919435 5.990000e-19 106
8 TraesCS7D01G019800 chr4A 87.260 2708 232 51 1212 3846 731340243 731337576 0.000000e+00 2985
9 TraesCS7D01G019800 chr4A 89.339 469 26 9 1 447 731342423 731341957 6.360000e-158 568
10 TraesCS7D01G019800 chr4A 78.605 645 81 32 611 1207 731340913 731340278 1.490000e-99 374
11 TraesCS7D01G019800 chr4A 90.347 259 23 2 3869 4126 731335155 731334898 5.430000e-89 339
12 TraesCS7D01G019800 chr4A 83.041 171 18 3 4139 4298 706598209 706598039 1.270000e-30 145
13 TraesCS7D01G019800 chr4A 90.000 80 8 0 2417 2496 16247705 16247784 2.150000e-18 104
14 TraesCS7D01G019800 chr4A 85.263 95 14 0 2406 2500 489434305 489434211 1.000000e-16 99
15 TraesCS7D01G019800 chr5D 88.957 163 18 0 4139 4301 558874595 558874757 7.430000e-48 202
16 TraesCS7D01G019800 chr6A 85.561 187 16 4 4130 4305 600118354 600118168 7.480000e-43 185
17 TraesCS7D01G019800 chr3D 84.483 174 16 2 4137 4299 481206209 481206382 1.260000e-35 161
18 TraesCS7D01G019800 chr6D 85.350 157 13 2 4142 4288 320944262 320944106 2.110000e-33 154
19 TraesCS7D01G019800 chr3B 84.615 143 22 0 4139 4281 810934609 810934751 4.570000e-30 143
20 TraesCS7D01G019800 chr4D 90.000 80 8 0 2417 2496 450331762 450331683 2.150000e-18 104
21 TraesCS7D01G019800 chr4D 85.263 95 14 0 2406 2500 93069852 93069946 1.000000e-16 99
22 TraesCS7D01G019800 chr4B 90.000 80 8 0 2417 2496 563628098 563628019 2.150000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G019800 chr7D 8477399 8481778 4379 False 8089.0 8089 100.00000 1 4380 1 chr7D.!!$F1 4379
1 TraesCS7D01G019800 chr7A 8913972 8919435 5463 False 1417.0 4695 91.91150 1 4380 4 chr7A.!!$F2 4379
2 TraesCS7D01G019800 chr4A 731334898 731342423 7525 True 1066.5 2985 86.38775 1 4126 4 chr4A.!!$R3 4125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 709 0.241749 ACGACGGCGACTGTTGAATA 59.758 50.000 22.49 0.00 41.64 1.75 F
609 712 0.319083 ACGGCGACTGTTGAATACCA 59.681 50.000 16.62 0.00 0.00 3.25 F
644 1551 0.324943 ATGTTTGGCTACCTCGTGCT 59.675 50.000 0.00 0.00 0.00 4.40 F
1032 1992 0.476808 ATGAACCCCACCACCACCTA 60.477 55.000 0.00 0.00 0.00 3.08 F
1050 2013 0.624254 TACTCGGCTTCTCCTCCTCA 59.376 55.000 0.00 0.00 0.00 3.86 F
1207 2170 1.002990 TCTCTCTACGACACGGCCA 60.003 57.895 2.24 0.00 0.00 5.36 F
1456 2458 1.039785 CCCGTCTCTGAGCTCCATGA 61.040 60.000 12.15 6.15 0.00 3.07 F
3044 4117 0.394192 TGCTCCCACGGATCATCATC 59.606 55.000 0.00 0.00 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 2616 0.898320 GCAAGTCAGGGTGAGAGCTA 59.102 55.000 0.00 0.0 0.00 3.32 R
1870 2896 1.003118 ACCAGATGCAGCTCCGTAAAA 59.997 47.619 0.00 0.0 0.00 1.52 R
2262 3308 1.358830 CCCTGCTCTCCCCCATTGAT 61.359 60.000 0.00 0.0 0.00 2.57 R
3008 4081 0.240145 GCAAGTTCGCCTTTACCACC 59.760 55.000 0.00 0.0 0.00 4.61 R
3013 4086 0.398696 TGGGAGCAAGTTCGCCTTTA 59.601 50.000 0.00 0.0 0.00 1.85 R
3043 4116 1.067364 CATGCTGCCAAGTTGTTGTGA 59.933 47.619 1.45 0.0 30.95 3.58 R
3215 4288 0.035439 CCCAAGGTAAGCGACACCAT 60.035 55.000 7.10 0.0 38.62 3.55 R
3978 8894 0.037975 GTCGAAACCGGTGAAGCCTA 60.038 55.000 8.52 0.0 34.25 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.191371 GCCTACAGGAACCTTTGACAATG 59.809 47.826 0.00 0.00 37.39 2.82
276 277 7.637709 AAGCGAATAAATTCAGTGGAAAAAC 57.362 32.000 3.76 0.00 36.43 2.43
281 293 8.427012 CGAATAAATTCAGTGGAAAAACATGTG 58.573 33.333 0.00 0.00 36.43 3.21
291 303 3.993736 GGAAAAACATGTGCAATGGTACC 59.006 43.478 4.43 4.43 0.00 3.34
311 323 3.073946 ACCAGTACCACCATACTTTGCTT 59.926 43.478 0.00 0.00 32.92 3.91
387 399 4.826274 ATCAGTACACTTGCAGTACCAT 57.174 40.909 10.25 2.34 42.09 3.55
396 419 6.106673 ACACTTGCAGTACCATATTGTAGAC 58.893 40.000 0.00 0.00 0.00 2.59
404 427 7.971168 GCAGTACCATATTGTAGACTAGCTATG 59.029 40.741 0.00 0.00 0.00 2.23
410 433 8.512956 CCATATTGTAGACTAGCTATGTACGTT 58.487 37.037 0.00 0.00 0.00 3.99
421 444 3.131755 GCTATGTACGTTTGTCCTAGGGT 59.868 47.826 9.46 0.00 0.00 4.34
453 476 9.457436 TTCAAGTCTTAAAATGTATAGAACCCC 57.543 33.333 0.00 0.00 0.00 4.95
454 477 8.832735 TCAAGTCTTAAAATGTATAGAACCCCT 58.167 33.333 0.00 0.00 0.00 4.79
455 478 9.110502 CAAGTCTTAAAATGTATAGAACCCCTC 57.889 37.037 0.00 0.00 0.00 4.30
469 572 1.329256 CCCCTCTGGTCTGGTATACG 58.671 60.000 0.00 0.00 0.00 3.06
473 576 2.361438 CCTCTGGTCTGGTATACGGAAC 59.639 54.545 0.00 1.50 42.82 3.62
480 583 0.756442 TGGTATACGGAACCCCCTCG 60.756 60.000 0.00 0.00 36.06 4.63
498 601 6.346096 CCCCTCGTATTTTGAGTCTTGATTA 58.654 40.000 0.00 0.00 0.00 1.75
499 602 6.258068 CCCCTCGTATTTTGAGTCTTGATTAC 59.742 42.308 0.00 0.00 0.00 1.89
500 603 7.042335 CCCTCGTATTTTGAGTCTTGATTACT 58.958 38.462 0.00 0.00 0.00 2.24
501 604 8.195436 CCCTCGTATTTTGAGTCTTGATTACTA 58.805 37.037 0.00 0.00 0.00 1.82
516 619 7.615365 TCTTGATTACTAACTGGGAAATGCAAT 59.385 33.333 0.00 0.00 0.00 3.56
517 620 7.716799 TGATTACTAACTGGGAAATGCAATT 57.283 32.000 0.00 0.00 38.98 2.32
519 622 6.524101 TTACTAACTGGGAAATGCAATTCC 57.476 37.500 23.14 23.14 46.74 3.01
556 659 6.897259 TTGGTATCGAACTTGTGTATTAGC 57.103 37.500 0.00 0.00 0.00 3.09
557 660 6.216801 TGGTATCGAACTTGTGTATTAGCT 57.783 37.500 0.00 0.00 0.00 3.32
558 661 7.337480 TGGTATCGAACTTGTGTATTAGCTA 57.663 36.000 0.00 0.00 0.00 3.32
559 662 7.774134 TGGTATCGAACTTGTGTATTAGCTAA 58.226 34.615 8.99 8.99 0.00 3.09
560 663 8.252417 TGGTATCGAACTTGTGTATTAGCTAAA 58.748 33.333 10.85 0.00 0.00 1.85
561 664 9.257651 GGTATCGAACTTGTGTATTAGCTAAAT 57.742 33.333 10.85 2.20 0.00 1.40
564 667 7.970384 TCGAACTTGTGTATTAGCTAAATTGG 58.030 34.615 10.85 0.66 0.00 3.16
565 668 7.604927 TCGAACTTGTGTATTAGCTAAATTGGT 59.395 33.333 10.85 0.00 0.00 3.67
568 671 8.807948 ACTTGTGTATTAGCTAAATTGGTGAT 57.192 30.769 10.85 0.00 0.00 3.06
569 672 8.893727 ACTTGTGTATTAGCTAAATTGGTGATC 58.106 33.333 10.85 0.00 0.00 2.92
571 674 8.800370 TGTGTATTAGCTAAATTGGTGATCAA 57.200 30.769 10.85 0.00 40.01 2.57
572 675 9.237187 TGTGTATTAGCTAAATTGGTGATCAAA 57.763 29.630 10.85 0.00 39.05 2.69
578 681 9.733556 TTAGCTAAATTGGTGATCAAAACTAGA 57.266 29.630 2.97 0.00 39.05 2.43
579 682 8.045176 AGCTAAATTGGTGATCAAAACTAGAC 57.955 34.615 0.00 0.00 39.05 2.59
580 683 7.665559 AGCTAAATTGGTGATCAAAACTAGACA 59.334 33.333 0.00 0.00 39.05 3.41
582 685 7.581213 AAATTGGTGATCAAAACTAGACACA 57.419 32.000 0.00 0.00 39.05 3.72
583 686 7.581213 AATTGGTGATCAAAACTAGACACAA 57.419 32.000 0.00 0.00 39.05 3.33
584 687 7.581213 ATTGGTGATCAAAACTAGACACAAA 57.419 32.000 0.00 0.00 39.05 2.83
585 688 7.397892 TTGGTGATCAAAACTAGACACAAAA 57.602 32.000 0.00 0.00 31.46 2.44
586 689 6.791303 TGGTGATCAAAACTAGACACAAAAC 58.209 36.000 0.00 0.00 0.00 2.43
587 690 6.375736 TGGTGATCAAAACTAGACACAAAACA 59.624 34.615 0.00 0.00 0.00 2.83
588 691 6.691388 GGTGATCAAAACTAGACACAAAACAC 59.309 38.462 0.00 0.00 0.00 3.32
589 692 6.410914 GTGATCAAAACTAGACACAAAACACG 59.589 38.462 0.00 0.00 0.00 4.49
590 693 6.314152 TGATCAAAACTAGACACAAAACACGA 59.686 34.615 0.00 0.00 0.00 4.35
591 694 5.860641 TCAAAACTAGACACAAAACACGAC 58.139 37.500 0.00 0.00 0.00 4.34
594 697 1.191647 CTAGACACAAAACACGACGGC 59.808 52.381 0.00 0.00 0.00 5.68
596 699 1.754436 GACACAAAACACGACGGCGA 61.754 55.000 22.49 0.00 41.64 5.54
597 700 1.367195 CACAAAACACGACGGCGAC 60.367 57.895 22.49 6.59 41.64 5.19
598 701 1.519898 ACAAAACACGACGGCGACT 60.520 52.632 22.49 0.00 41.64 4.18
599 702 1.083657 CAAAACACGACGGCGACTG 60.084 57.895 22.49 9.25 41.64 3.51
600 703 1.519898 AAAACACGACGGCGACTGT 60.520 52.632 22.49 10.13 41.64 3.55
601 704 1.085501 AAAACACGACGGCGACTGTT 61.086 50.000 22.49 16.94 38.04 3.16
604 707 1.947146 CACGACGGCGACTGTTGAA 60.947 57.895 22.49 0.00 41.64 2.69
605 708 1.006571 ACGACGGCGACTGTTGAAT 60.007 52.632 22.49 0.00 41.64 2.57
606 709 0.241749 ACGACGGCGACTGTTGAATA 59.758 50.000 22.49 0.00 41.64 1.75
607 710 0.638746 CGACGGCGACTGTTGAATAC 59.361 55.000 16.62 0.00 40.82 1.89
609 712 0.319083 ACGGCGACTGTTGAATACCA 59.681 50.000 16.62 0.00 0.00 3.25
610 713 0.999406 CGGCGACTGTTGAATACCAG 59.001 55.000 0.00 0.00 0.00 4.00
611 714 1.403647 CGGCGACTGTTGAATACCAGA 60.404 52.381 0.00 0.00 0.00 3.86
612 715 2.000447 GGCGACTGTTGAATACCAGAC 59.000 52.381 0.00 0.00 0.00 3.51
636 1543 5.220931 CCAAAGAGAGCATATGTTTGGCTAC 60.221 44.000 17.15 2.66 42.13 3.58
637 1544 4.078639 AGAGAGCATATGTTTGGCTACC 57.921 45.455 4.29 0.00 38.15 3.18
640 1547 2.802816 GAGCATATGTTTGGCTACCTCG 59.197 50.000 4.29 0.00 38.15 4.63
641 1548 2.170607 AGCATATGTTTGGCTACCTCGT 59.829 45.455 4.29 0.00 35.82 4.18
643 1550 2.018542 TATGTTTGGCTACCTCGTGC 57.981 50.000 0.00 0.00 0.00 5.34
644 1551 0.324943 ATGTTTGGCTACCTCGTGCT 59.675 50.000 0.00 0.00 0.00 4.40
728 1639 2.481568 CTCTGTCATTCACACGCACATT 59.518 45.455 0.00 0.00 0.00 2.71
799 1710 0.762418 ATCCACCGAGACCACACAAA 59.238 50.000 0.00 0.00 0.00 2.83
836 1747 2.557920 AGCAAGAGCAAGTGTAAGCT 57.442 45.000 0.00 0.00 45.49 3.74
838 1749 3.594134 AGCAAGAGCAAGTGTAAGCTAG 58.406 45.455 0.00 0.00 45.49 3.42
839 1750 3.007398 AGCAAGAGCAAGTGTAAGCTAGT 59.993 43.478 0.00 0.00 45.49 2.57
841 1752 4.564769 GCAAGAGCAAGTGTAAGCTAGTAG 59.435 45.833 0.00 0.00 42.04 2.57
842 1753 5.715070 CAAGAGCAAGTGTAAGCTAGTAGT 58.285 41.667 0.00 0.00 42.04 2.73
843 1754 5.570234 AGAGCAAGTGTAAGCTAGTAGTC 57.430 43.478 0.00 0.00 42.04 2.59
963 1923 6.017687 GCAGTAGTAGTTAGTTAGCTCTCTCC 60.018 46.154 0.00 0.00 0.00 3.71
979 1939 1.278985 TCTCCCACACAGGCATACTTG 59.721 52.381 0.00 0.00 35.39 3.16
1032 1992 0.476808 ATGAACCCCACCACCACCTA 60.477 55.000 0.00 0.00 0.00 3.08
1050 2013 0.624254 TACTCGGCTTCTCCTCCTCA 59.376 55.000 0.00 0.00 0.00 3.86
1107 2070 4.308458 TTCGACCACCACGGCCTG 62.308 66.667 0.00 0.00 39.03 4.85
1113 2076 4.988598 CACCACGGCCTGTTCGCT 62.989 66.667 0.00 0.00 0.00 4.93
1124 2087 2.432628 GTTCGCTCCACTCCACGG 60.433 66.667 0.00 0.00 0.00 4.94
1207 2170 1.002990 TCTCTCTACGACACGGCCA 60.003 57.895 2.24 0.00 0.00 5.36
1290 2289 2.158798 GCCCTTCCGGTTAAATAGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
1305 2304 1.627019 CTCTAGGTACCTGGGCCCT 59.373 63.158 25.33 5.02 0.00 5.19
1320 2319 4.093291 CCTGCGAGGGAGCTGCTT 62.093 66.667 2.53 0.00 38.13 3.91
1321 2320 2.818714 CTGCGAGGGAGCTGCTTG 60.819 66.667 2.53 0.00 38.13 4.01
1410 2412 2.504244 GAAGTGGAGGCGTCGTCG 60.504 66.667 0.00 0.00 40.37 5.12
1456 2458 1.039785 CCCGTCTCTGAGCTCCATGA 61.040 60.000 12.15 6.15 0.00 3.07
1479 2481 2.124109 ATGGCGCTCGAGAGGAGA 60.124 61.111 18.75 0.00 46.23 3.71
1492 2494 1.229788 AGGAGAAAGGCCAGGCTCT 60.230 57.895 12.43 6.37 0.00 4.09
1504 2506 2.421952 GCCAGGCTCTTGTCCATGATTA 60.422 50.000 3.29 0.00 0.00 1.75
1525 2527 6.675413 TTAAAGAGGTAGGTACACACACAT 57.325 37.500 0.00 0.00 0.00 3.21
1644 2656 6.974622 ACTTGCAACTTTTGAGTCTGTTATTG 59.025 34.615 0.00 0.00 0.00 1.90
1678 2690 1.963172 ACTTTGGTGACGTTTCCTCC 58.037 50.000 10.46 0.17 0.00 4.30
1759 2782 8.420222 AGATACAGTTTCATCCTCACTCTTATG 58.580 37.037 0.00 0.00 0.00 1.90
1894 2920 2.039418 ACGGAGCTGCATCTGGTTATA 58.961 47.619 5.91 0.00 0.00 0.98
2103 3149 2.280552 GGTGGACAGGTGCTACCGA 61.281 63.158 0.00 0.00 44.90 4.69
2217 3263 1.374125 CATGTCACGCCACTTCCGA 60.374 57.895 0.00 0.00 0.00 4.55
2262 3308 4.454504 GGGCAGATACGAACTTTGAAGAAA 59.545 41.667 0.00 0.00 0.00 2.52
2289 3335 2.420890 GAGAGCAGGGATGCCGAG 59.579 66.667 0.00 0.00 34.90 4.63
2388 3434 1.455383 GGGCGTTCCAGCAATATGGG 61.455 60.000 0.00 0.00 41.01 4.00
2509 3555 1.202675 ACCCGTACGTGTGTTCCAAAT 60.203 47.619 15.21 0.00 0.00 2.32
2530 3576 8.715998 CCAAATAATCTATCTCCATCTTCAACG 58.284 37.037 0.00 0.00 0.00 4.10
2549 3595 5.047306 TCAACGTCAAACTATCCTCATGTCT 60.047 40.000 0.00 0.00 0.00 3.41
2609 3655 4.202461 TGCCACCATCTCACTAAAGTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
2612 3658 6.234177 CCACCATCTCACTAAAGTTTCTCTT 58.766 40.000 0.00 0.00 38.10 2.85
2613 3659 6.148480 CCACCATCTCACTAAAGTTTCTCTTG 59.852 42.308 0.00 0.00 36.40 3.02
2638 3684 4.380867 CCAAAGAGTGCAATTTTAGGCGAT 60.381 41.667 0.00 0.00 0.00 4.58
2640 3686 5.391312 AAGAGTGCAATTTTAGGCGATTT 57.609 34.783 0.00 0.00 0.00 2.17
2729 3802 8.768397 AGAACTATGTGAATTAACAGGTATCCA 58.232 33.333 1.29 0.00 32.52 3.41
2786 3859 2.369394 GGGTTATCAAGAAGCCAGGTG 58.631 52.381 0.93 0.00 44.76 4.00
2808 3881 4.158384 GTGTTATTCAAACATGAGCACCG 58.842 43.478 0.00 0.00 32.23 4.94
2824 3897 5.887598 TGAGCACCGTAGAACTACCTTAATA 59.112 40.000 6.43 0.00 32.61 0.98
2992 4065 5.634896 GCAGAAGAAACCATACAACATGAG 58.365 41.667 0.00 0.00 0.00 2.90
3008 4081 3.701604 GAGGACGGTGGCACTAGCG 62.702 68.421 18.45 14.97 46.10 4.26
3013 4086 4.016706 GGTGGCACTAGCGGTGGT 62.017 66.667 18.45 0.00 45.44 4.16
3015 4088 1.294138 GTGGCACTAGCGGTGGTAA 59.706 57.895 11.13 0.00 45.44 2.85
3024 4097 1.670083 GCGGTGGTAAAGGCGAACT 60.670 57.895 0.00 0.00 0.00 3.01
3043 4116 0.839277 TTGCTCCCACGGATCATCAT 59.161 50.000 0.00 0.00 27.57 2.45
3044 4117 0.394192 TGCTCCCACGGATCATCATC 59.606 55.000 0.00 0.00 0.00 2.92
3180 4253 1.477553 GGCAGCCAATTTCTCCATGA 58.522 50.000 6.55 0.00 0.00 3.07
3194 4267 3.650942 TCTCCATGACTACCCAAGTTTGT 59.349 43.478 0.00 0.00 39.07 2.83
3249 4322 1.227823 TGGGACTCCAACAGCAACG 60.228 57.895 0.00 0.00 40.73 4.10
3359 4432 1.270414 CCTCATGGGGTCTGAGCTGT 61.270 60.000 2.32 0.00 39.04 4.40
3545 4618 6.603997 ACCACTATTTATTTATTTCGTGCCCA 59.396 34.615 0.00 0.00 0.00 5.36
3559 4650 4.197750 TCGTGCCCAAAAACTTGTAGTAA 58.802 39.130 0.00 0.00 0.00 2.24
3560 4651 4.273969 TCGTGCCCAAAAACTTGTAGTAAG 59.726 41.667 0.00 0.00 0.00 2.34
3561 4652 4.295870 GTGCCCAAAAACTTGTAGTAAGC 58.704 43.478 0.00 0.00 0.00 3.09
3562 4653 3.319689 TGCCCAAAAACTTGTAGTAAGCC 59.680 43.478 0.00 0.00 0.00 4.35
3563 4654 3.305813 GCCCAAAAACTTGTAGTAAGCCC 60.306 47.826 0.00 0.00 0.00 5.19
3564 4655 4.149598 CCCAAAAACTTGTAGTAAGCCCT 58.850 43.478 0.00 0.00 0.00 5.19
3565 4656 5.318630 CCCAAAAACTTGTAGTAAGCCCTA 58.681 41.667 0.00 0.00 0.00 3.53
3566 4657 5.414765 CCCAAAAACTTGTAGTAAGCCCTAG 59.585 44.000 0.00 0.00 0.00 3.02
3567 4658 5.414765 CCAAAAACTTGTAGTAAGCCCTAGG 59.585 44.000 0.06 0.06 0.00 3.02
3568 4659 4.838904 AAACTTGTAGTAAGCCCTAGGG 57.161 45.455 24.89 24.89 38.57 3.53
3569 4660 3.486653 ACTTGTAGTAAGCCCTAGGGT 57.513 47.619 28.96 13.01 37.65 4.34
3570 4661 4.614967 ACTTGTAGTAAGCCCTAGGGTA 57.385 45.455 28.96 11.89 37.65 3.69
3571 4662 5.153670 ACTTGTAGTAAGCCCTAGGGTAT 57.846 43.478 28.96 19.57 37.65 2.73
3572 4663 5.535990 ACTTGTAGTAAGCCCTAGGGTATT 58.464 41.667 28.96 23.96 37.65 1.89
3573 4664 6.686544 ACTTGTAGTAAGCCCTAGGGTATTA 58.313 40.000 28.96 22.97 37.65 0.98
3574 4665 6.781507 ACTTGTAGTAAGCCCTAGGGTATTAG 59.218 42.308 28.96 17.27 37.65 1.73
3575 4666 6.285329 TGTAGTAAGCCCTAGGGTATTAGT 57.715 41.667 28.96 27.10 37.65 2.24
3576 4667 6.073314 TGTAGTAAGCCCTAGGGTATTAGTG 58.927 44.000 28.49 8.63 37.65 2.74
3591 4682 7.071321 AGGGTATTAGTGAGAACTAAGGAATGG 59.929 40.741 4.79 0.00 35.89 3.16
3652 4743 2.093890 TGCCACGTCGACCTTAGATTA 58.906 47.619 10.58 0.00 0.00 1.75
3780 4875 9.021807 TCCCGAAATATTGTAACCATTTTAACA 57.978 29.630 0.00 0.00 0.00 2.41
3929 7424 2.393764 CACCCTTTCAATTGTTGCGAC 58.606 47.619 5.13 0.00 0.00 5.19
3978 8894 0.035317 TGCGCCATGTTCTCAGTTCT 59.965 50.000 4.18 0.00 0.00 3.01
3979 8895 1.275010 TGCGCCATGTTCTCAGTTCTA 59.725 47.619 4.18 0.00 0.00 2.10
3990 8906 0.895530 TCAGTTCTAGGCTTCACCGG 59.104 55.000 0.00 0.00 46.52 5.28
3994 8910 2.074576 GTTCTAGGCTTCACCGGTTTC 58.925 52.381 2.97 0.00 46.52 2.78
3995 8911 0.245539 TCTAGGCTTCACCGGTTTCG 59.754 55.000 2.97 0.00 46.52 3.46
3998 8914 1.301479 GGCTTCACCGGTTTCGACT 60.301 57.895 2.97 0.00 39.00 4.18
4084 9001 4.381566 GCGTCATGTTTTGGATTGTACAAC 59.618 41.667 11.22 5.10 0.00 3.32
4094 9011 8.410912 GTTTTGGATTGTACAACTTAGAAACCT 58.589 33.333 11.22 0.00 0.00 3.50
4095 9012 8.528044 TTTGGATTGTACAACTTAGAAACCTT 57.472 30.769 11.22 0.00 0.00 3.50
4128 9045 8.641499 TGATTTTTCACAACATGTTCTAAACC 57.359 30.769 8.48 0.00 0.00 3.27
4129 9046 8.474025 TGATTTTTCACAACATGTTCTAAACCT 58.526 29.630 8.48 0.22 0.00 3.50
4130 9047 8.647143 ATTTTTCACAACATGTTCTAAACCTG 57.353 30.769 8.48 0.00 33.85 4.00
4131 9048 6.767524 TTTCACAACATGTTCTAAACCTGT 57.232 33.333 8.48 0.00 41.13 4.00
4132 9049 5.749596 TCACAACATGTTCTAAACCTGTG 57.250 39.130 8.48 12.01 38.95 3.66
4133 9050 4.036262 TCACAACATGTTCTAAACCTGTGC 59.964 41.667 8.48 0.00 38.95 4.57
4135 9052 5.238432 CACAACATGTTCTAAACCTGTGCTA 59.762 40.000 8.48 0.00 38.95 3.49
4136 9053 5.825679 ACAACATGTTCTAAACCTGTGCTAA 59.174 36.000 8.48 0.00 38.95 3.09
4138 9055 6.743575 ACATGTTCTAAACCTGTGCTAATC 57.256 37.500 0.00 0.00 38.54 1.75
4139 9056 6.237901 ACATGTTCTAAACCTGTGCTAATCA 58.762 36.000 0.00 0.00 38.54 2.57
4140 9057 6.886459 ACATGTTCTAAACCTGTGCTAATCAT 59.114 34.615 0.00 0.00 38.54 2.45
4141 9058 8.046708 ACATGTTCTAAACCTGTGCTAATCATA 58.953 33.333 0.00 0.00 38.54 2.15
4143 9060 7.620880 TGTTCTAAACCTGTGCTAATCATAGT 58.379 34.615 0.00 0.00 32.66 2.12
4144 9061 8.100791 TGTTCTAAACCTGTGCTAATCATAGTT 58.899 33.333 0.00 0.00 32.66 2.24
4145 9062 8.947115 GTTCTAAACCTGTGCTAATCATAGTTT 58.053 33.333 0.00 0.00 32.66 2.66
4146 9063 9.515226 TTCTAAACCTGTGCTAATCATAGTTTT 57.485 29.630 0.00 0.00 34.13 2.43
4153 9070 9.884465 CCTGTGCTAATCATAGTTTTAAATAGC 57.116 33.333 6.34 6.34 36.08 2.97
4157 9074 8.067784 TGCTAATCATAGTTTTAAATAGCACGC 58.932 33.333 10.37 0.00 39.46 5.34
4158 9075 8.283291 GCTAATCATAGTTTTAAATAGCACGCT 58.717 33.333 7.85 0.00 35.70 5.07
4162 9079 7.627340 TCATAGTTTTAAATAGCACGCTAAGC 58.373 34.615 2.32 0.00 31.73 3.09
4163 9080 5.231265 AGTTTTAAATAGCACGCTAAGCC 57.769 39.130 2.32 0.00 31.73 4.35
4164 9081 4.941873 AGTTTTAAATAGCACGCTAAGCCT 59.058 37.500 2.32 0.00 31.73 4.58
4165 9082 5.414765 AGTTTTAAATAGCACGCTAAGCCTT 59.585 36.000 2.32 0.00 31.73 4.35
4166 9083 5.890424 TTTAAATAGCACGCTAAGCCTTT 57.110 34.783 2.32 2.19 31.73 3.11
4167 9084 5.890424 TTAAATAGCACGCTAAGCCTTTT 57.110 34.783 2.32 1.85 31.73 2.27
4168 9085 6.988622 TTAAATAGCACGCTAAGCCTTTTA 57.011 33.333 2.32 0.93 31.73 1.52
4169 9086 5.485662 AAATAGCACGCTAAGCCTTTTAG 57.514 39.130 2.32 0.00 31.73 1.85
4170 9087 1.087501 AGCACGCTAAGCCTTTTAGC 58.912 50.000 8.48 8.48 42.82 3.09
4175 9092 0.733150 GCTAAGCCTTTTAGCGGTGG 59.267 55.000 0.00 0.00 38.12 4.61
4176 9093 1.677820 GCTAAGCCTTTTAGCGGTGGA 60.678 52.381 0.00 0.00 38.12 4.02
4177 9094 2.007608 CTAAGCCTTTTAGCGGTGGAC 58.992 52.381 0.00 0.00 38.01 4.02
4178 9095 0.608308 AAGCCTTTTAGCGGTGGACC 60.608 55.000 0.00 0.00 38.01 4.46
4179 9096 1.002502 GCCTTTTAGCGGTGGACCT 60.003 57.895 0.00 0.00 0.00 3.85
4180 9097 1.025113 GCCTTTTAGCGGTGGACCTC 61.025 60.000 0.00 0.00 0.00 3.85
4181 9098 0.613777 CCTTTTAGCGGTGGACCTCT 59.386 55.000 0.00 0.00 34.96 3.69
4182 9099 1.003233 CCTTTTAGCGGTGGACCTCTT 59.997 52.381 0.00 0.00 32.52 2.85
4183 9100 2.347731 CTTTTAGCGGTGGACCTCTTC 58.652 52.381 0.00 0.00 32.52 2.87
4184 9101 1.640917 TTTAGCGGTGGACCTCTTCT 58.359 50.000 0.00 0.00 32.52 2.85
4185 9102 2.519771 TTAGCGGTGGACCTCTTCTA 57.480 50.000 0.00 0.00 32.52 2.10
4186 9103 2.519771 TAGCGGTGGACCTCTTCTAA 57.480 50.000 0.00 0.00 32.52 2.10
4187 9104 1.187087 AGCGGTGGACCTCTTCTAAG 58.813 55.000 0.00 0.00 0.00 2.18
4188 9105 0.460459 GCGGTGGACCTCTTCTAAGC 60.460 60.000 0.00 0.00 0.00 3.09
4189 9106 0.179134 CGGTGGACCTCTTCTAAGCG 60.179 60.000 0.00 0.00 0.00 4.68
4190 9107 0.460459 GGTGGACCTCTTCTAAGCGC 60.460 60.000 0.00 0.00 0.00 5.92
4191 9108 0.533032 GTGGACCTCTTCTAAGCGCT 59.467 55.000 2.64 2.64 0.00 5.92
4192 9109 1.749634 GTGGACCTCTTCTAAGCGCTA 59.250 52.381 12.05 0.00 0.00 4.26
4193 9110 2.362717 GTGGACCTCTTCTAAGCGCTAT 59.637 50.000 12.05 3.52 0.00 2.97
4194 9111 3.568853 GTGGACCTCTTCTAAGCGCTATA 59.431 47.826 12.05 4.66 0.00 1.31
4195 9112 3.821600 TGGACCTCTTCTAAGCGCTATAG 59.178 47.826 12.05 14.74 0.00 1.31
4196 9113 3.366577 GGACCTCTTCTAAGCGCTATAGC 60.367 52.174 12.05 15.09 37.78 2.97
4197 9114 3.223435 ACCTCTTCTAAGCGCTATAGCA 58.777 45.455 23.99 4.62 42.21 3.49
4198 9115 3.004944 ACCTCTTCTAAGCGCTATAGCAC 59.995 47.826 23.99 14.97 42.21 4.40
4199 9116 3.230355 CTCTTCTAAGCGCTATAGCACG 58.770 50.000 23.99 10.15 42.21 5.34
4224 9141 8.782533 GCTATAGCGTGCTATTTAAAATGTTT 57.217 30.769 18.62 0.00 39.65 2.83
4225 9142 8.682016 GCTATAGCGTGCTATTTAAAATGTTTG 58.318 33.333 18.62 0.00 39.65 2.93
4226 9143 9.716507 CTATAGCGTGCTATTTAAAATGTTTGT 57.283 29.630 18.62 0.00 39.65 2.83
4227 9144 8.980143 ATAGCGTGCTATTTAAAATGTTTGTT 57.020 26.923 8.54 0.00 35.92 2.83
4228 9145 7.333288 AGCGTGCTATTTAAAATGTTTGTTC 57.667 32.000 0.00 0.00 0.00 3.18
4229 9146 6.920758 AGCGTGCTATTTAAAATGTTTGTTCA 59.079 30.769 0.00 0.00 0.00 3.18
4230 9147 7.598493 AGCGTGCTATTTAAAATGTTTGTTCAT 59.402 29.630 0.00 0.00 0.00 2.57
4231 9148 7.683676 GCGTGCTATTTAAAATGTTTGTTCATG 59.316 33.333 0.00 0.00 0.00 3.07
4232 9149 8.698854 CGTGCTATTTAAAATGTTTGTTCATGT 58.301 29.630 0.00 0.00 0.00 3.21
4233 9150 9.796062 GTGCTATTTAAAATGTTTGTTCATGTG 57.204 29.630 0.00 0.00 0.00 3.21
4234 9151 9.539825 TGCTATTTAAAATGTTTGTTCATGTGT 57.460 25.926 0.00 0.00 0.00 3.72
4242 9159 8.489990 AAATGTTTGTTCATGTGTTTGAATCA 57.510 26.923 0.00 0.00 37.88 2.57
4243 9160 8.489990 AATGTTTGTTCATGTGTTTGAATCAA 57.510 26.923 0.00 0.00 37.88 2.57
4244 9161 7.895975 TGTTTGTTCATGTGTTTGAATCAAA 57.104 28.000 4.03 4.03 37.88 2.69
4245 9162 7.961855 TGTTTGTTCATGTGTTTGAATCAAAG 58.038 30.769 8.88 0.00 37.33 2.77
4246 9163 7.601886 TGTTTGTTCATGTGTTTGAATCAAAGT 59.398 29.630 8.88 0.00 37.33 2.66
4247 9164 7.754069 TTGTTCATGTGTTTGAATCAAAGTC 57.246 32.000 8.88 5.98 37.88 3.01
4248 9165 6.272318 TGTTCATGTGTTTGAATCAAAGTCC 58.728 36.000 8.88 0.00 37.88 3.85
4249 9166 5.452078 TCATGTGTTTGAATCAAAGTCCC 57.548 39.130 8.88 0.00 33.82 4.46
4250 9167 5.139727 TCATGTGTTTGAATCAAAGTCCCT 58.860 37.500 8.88 0.00 33.82 4.20
4251 9168 5.598005 TCATGTGTTTGAATCAAAGTCCCTT 59.402 36.000 8.88 0.00 33.82 3.95
4252 9169 6.775142 TCATGTGTTTGAATCAAAGTCCCTTA 59.225 34.615 8.88 0.00 33.82 2.69
4253 9170 6.633500 TGTGTTTGAATCAAAGTCCCTTAG 57.367 37.500 8.88 0.00 33.82 2.18
4254 9171 5.009610 TGTGTTTGAATCAAAGTCCCTTAGC 59.990 40.000 8.88 0.00 33.82 3.09
4255 9172 4.215399 TGTTTGAATCAAAGTCCCTTAGCG 59.785 41.667 8.88 0.00 33.82 4.26
4256 9173 2.356135 TGAATCAAAGTCCCTTAGCGC 58.644 47.619 0.00 0.00 0.00 5.92
4257 9174 2.290008 TGAATCAAAGTCCCTTAGCGCA 60.290 45.455 11.47 0.00 0.00 6.09
4258 9175 2.489938 ATCAAAGTCCCTTAGCGCAA 57.510 45.000 11.47 0.50 0.00 4.85
4259 9176 1.808411 TCAAAGTCCCTTAGCGCAAG 58.192 50.000 11.47 11.32 43.44 4.01
4260 9177 1.346395 TCAAAGTCCCTTAGCGCAAGA 59.654 47.619 11.47 0.00 43.02 3.02
4261 9178 1.464997 CAAAGTCCCTTAGCGCAAGAC 59.535 52.381 11.47 8.67 43.02 3.01
4262 9179 0.036294 AAGTCCCTTAGCGCAAGACC 60.036 55.000 11.47 3.13 43.02 3.85
4263 9180 0.905337 AGTCCCTTAGCGCAAGACCT 60.905 55.000 11.47 5.23 43.02 3.85
4264 9181 0.460459 GTCCCTTAGCGCAAGACCTC 60.460 60.000 11.47 0.35 43.02 3.85
4265 9182 0.614979 TCCCTTAGCGCAAGACCTCT 60.615 55.000 11.47 0.00 43.02 3.69
4266 9183 0.250513 CCCTTAGCGCAAGACCTCTT 59.749 55.000 11.47 0.00 43.02 2.85
4279 9196 6.814076 CAAGACCTCTTGTAAACGCTATAG 57.186 41.667 6.85 0.00 46.11 1.31
4280 9197 4.934515 AGACCTCTTGTAAACGCTATAGC 58.065 43.478 15.09 15.09 37.78 2.97
4295 9212 5.292671 GCTATAGCGGGCTATTTAAAACC 57.707 43.478 17.49 0.00 39.65 3.27
4296 9213 4.758165 GCTATAGCGGGCTATTTAAAACCA 59.242 41.667 17.49 0.00 39.65 3.67
4297 9214 5.414765 GCTATAGCGGGCTATTTAAAACCAT 59.585 40.000 17.49 0.00 39.65 3.55
4298 9215 5.705609 ATAGCGGGCTATTTAAAACCATG 57.294 39.130 7.36 0.00 35.92 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.600449 TCAAAACATTGAAAAACCATATGTCC 57.400 30.769 1.24 0.00 0.00 4.02
95 96 8.877808 ATCGTTATGTATATATGAGCCACATG 57.122 34.615 7.90 0.00 39.77 3.21
291 303 3.440173 CCAAGCAAAGTATGGTGGTACTG 59.560 47.826 0.00 0.00 40.33 2.74
387 399 8.896744 ACAAACGTACATAGCTAGTCTACAATA 58.103 33.333 0.00 0.00 0.00 1.90
396 419 5.278364 CCCTAGGACAAACGTACATAGCTAG 60.278 48.000 11.48 0.00 0.00 3.42
404 427 4.263018 AGAAACCCTAGGACAAACGTAC 57.737 45.455 11.48 0.00 0.00 3.67
450 473 1.329256 CGTATACCAGACCAGAGGGG 58.671 60.000 0.00 0.00 44.81 4.79
451 474 1.133575 TCCGTATACCAGACCAGAGGG 60.134 57.143 0.00 0.00 41.29 4.30
452 475 2.359981 TCCGTATACCAGACCAGAGG 57.640 55.000 0.00 0.00 0.00 3.69
453 476 2.361438 GGTTCCGTATACCAGACCAGAG 59.639 54.545 9.95 0.00 35.67 3.35
454 477 2.381911 GGTTCCGTATACCAGACCAGA 58.618 52.381 9.95 0.00 35.67 3.86
455 478 1.411612 GGGTTCCGTATACCAGACCAG 59.588 57.143 14.54 0.00 37.40 4.00
469 572 2.026542 ACTCAAAATACGAGGGGGTTCC 60.027 50.000 0.00 0.00 34.66 3.62
473 576 3.055385 TCAAGACTCAAAATACGAGGGGG 60.055 47.826 0.00 0.00 34.66 5.40
498 601 3.443681 CGGAATTGCATTTCCCAGTTAGT 59.556 43.478 26.80 0.00 41.87 2.24
499 602 3.694072 TCGGAATTGCATTTCCCAGTTAG 59.306 43.478 26.80 15.80 41.87 2.34
500 603 3.691575 TCGGAATTGCATTTCCCAGTTA 58.308 40.909 26.80 10.68 41.87 2.24
501 604 2.524306 TCGGAATTGCATTTCCCAGTT 58.476 42.857 26.80 0.00 41.87 3.16
505 608 1.756538 ACCATCGGAATTGCATTTCCC 59.243 47.619 26.80 14.12 41.87 3.97
516 619 7.932491 TCGATACCAAAAATTATACCATCGGAA 59.068 33.333 0.00 0.00 34.91 4.30
517 620 7.443477 TCGATACCAAAAATTATACCATCGGA 58.557 34.615 0.00 0.00 34.91 4.55
519 622 8.770828 AGTTCGATACCAAAAATTATACCATCG 58.229 33.333 0.00 0.00 35.35 3.84
522 625 9.233649 ACAAGTTCGATACCAAAAATTATACCA 57.766 29.630 0.00 0.00 0.00 3.25
540 643 7.692291 CACCAATTTAGCTAATACACAAGTTCG 59.308 37.037 7.08 0.00 0.00 3.95
554 657 7.665559 TGTCTAGTTTTGATCACCAATTTAGCT 59.334 33.333 0.00 0.00 34.23 3.32
555 658 7.750903 GTGTCTAGTTTTGATCACCAATTTAGC 59.249 37.037 0.00 0.00 34.23 3.09
556 659 8.783093 TGTGTCTAGTTTTGATCACCAATTTAG 58.217 33.333 0.00 0.00 34.23 1.85
557 660 8.684386 TGTGTCTAGTTTTGATCACCAATTTA 57.316 30.769 0.00 0.00 34.23 1.40
558 661 7.581213 TGTGTCTAGTTTTGATCACCAATTT 57.419 32.000 0.00 0.00 34.23 1.82
559 662 7.581213 TTGTGTCTAGTTTTGATCACCAATT 57.419 32.000 0.00 0.00 34.23 2.32
560 663 7.581213 TTTGTGTCTAGTTTTGATCACCAAT 57.419 32.000 0.00 0.00 34.23 3.16
561 664 7.094162 TGTTTTGTGTCTAGTTTTGATCACCAA 60.094 33.333 0.00 0.00 0.00 3.67
562 665 6.375736 TGTTTTGTGTCTAGTTTTGATCACCA 59.624 34.615 0.00 0.00 0.00 4.17
563 666 6.691388 GTGTTTTGTGTCTAGTTTTGATCACC 59.309 38.462 0.00 0.00 0.00 4.02
564 667 6.410914 CGTGTTTTGTGTCTAGTTTTGATCAC 59.589 38.462 0.00 0.00 0.00 3.06
565 668 6.314152 TCGTGTTTTGTGTCTAGTTTTGATCA 59.686 34.615 0.00 0.00 0.00 2.92
568 671 5.444877 CGTCGTGTTTTGTGTCTAGTTTTGA 60.445 40.000 0.00 0.00 0.00 2.69
569 672 4.721977 CGTCGTGTTTTGTGTCTAGTTTTG 59.278 41.667 0.00 0.00 0.00 2.44
571 674 3.307782 CCGTCGTGTTTTGTGTCTAGTTT 59.692 43.478 0.00 0.00 0.00 2.66
572 675 2.861935 CCGTCGTGTTTTGTGTCTAGTT 59.138 45.455 0.00 0.00 0.00 2.24
573 676 2.466846 CCGTCGTGTTTTGTGTCTAGT 58.533 47.619 0.00 0.00 0.00 2.57
575 678 1.210870 GCCGTCGTGTTTTGTGTCTA 58.789 50.000 0.00 0.00 0.00 2.59
576 679 1.758319 CGCCGTCGTGTTTTGTGTCT 61.758 55.000 0.00 0.00 0.00 3.41
577 680 1.367195 CGCCGTCGTGTTTTGTGTC 60.367 57.895 0.00 0.00 0.00 3.67
578 681 1.810441 TCGCCGTCGTGTTTTGTGT 60.810 52.632 0.00 0.00 36.96 3.72
579 682 1.367195 GTCGCCGTCGTGTTTTGTG 60.367 57.895 0.00 0.00 36.96 3.33
580 683 1.519898 AGTCGCCGTCGTGTTTTGT 60.520 52.632 0.00 0.00 36.96 2.83
582 685 1.085501 AACAGTCGCCGTCGTGTTTT 61.086 50.000 0.00 0.00 33.09 2.43
583 686 1.519898 AACAGTCGCCGTCGTGTTT 60.520 52.632 0.00 0.00 33.09 2.83
584 687 2.105528 AACAGTCGCCGTCGTGTT 59.894 55.556 0.00 0.00 36.96 3.32
585 688 2.616786 TTCAACAGTCGCCGTCGTGT 62.617 55.000 0.00 0.00 36.96 4.49
586 689 1.282248 ATTCAACAGTCGCCGTCGTG 61.282 55.000 0.00 0.00 36.96 4.35
587 690 0.241749 TATTCAACAGTCGCCGTCGT 59.758 50.000 0.00 0.00 36.96 4.34
588 691 0.638746 GTATTCAACAGTCGCCGTCG 59.361 55.000 0.00 0.00 0.00 5.12
589 692 0.997196 GGTATTCAACAGTCGCCGTC 59.003 55.000 0.00 0.00 0.00 4.79
590 693 0.319083 TGGTATTCAACAGTCGCCGT 59.681 50.000 0.00 0.00 0.00 5.68
591 694 0.999406 CTGGTATTCAACAGTCGCCG 59.001 55.000 0.00 0.00 0.00 6.46
594 697 3.313012 TGGTCTGGTATTCAACAGTCG 57.687 47.619 0.00 0.00 36.17 4.18
596 699 5.071788 TCTCTTTGGTCTGGTATTCAACAGT 59.928 40.000 0.00 0.00 36.17 3.55
597 700 5.551233 TCTCTTTGGTCTGGTATTCAACAG 58.449 41.667 0.00 0.00 36.07 3.16
598 701 5.551233 CTCTCTTTGGTCTGGTATTCAACA 58.449 41.667 0.00 0.00 0.00 3.33
599 702 4.393371 GCTCTCTTTGGTCTGGTATTCAAC 59.607 45.833 0.00 0.00 0.00 3.18
600 703 4.041567 TGCTCTCTTTGGTCTGGTATTCAA 59.958 41.667 0.00 0.00 0.00 2.69
601 704 3.582647 TGCTCTCTTTGGTCTGGTATTCA 59.417 43.478 0.00 0.00 0.00 2.57
604 707 5.367937 ACATATGCTCTCTTTGGTCTGGTAT 59.632 40.000 1.58 0.00 0.00 2.73
605 708 4.716784 ACATATGCTCTCTTTGGTCTGGTA 59.283 41.667 1.58 0.00 0.00 3.25
606 709 3.521126 ACATATGCTCTCTTTGGTCTGGT 59.479 43.478 1.58 0.00 0.00 4.00
607 710 4.148128 ACATATGCTCTCTTTGGTCTGG 57.852 45.455 1.58 0.00 0.00 3.86
609 712 4.946157 CCAAACATATGCTCTCTTTGGTCT 59.054 41.667 19.47 0.00 37.26 3.85
610 713 4.439289 GCCAAACATATGCTCTCTTTGGTC 60.439 45.833 24.55 17.33 41.94 4.02
611 714 3.445096 GCCAAACATATGCTCTCTTTGGT 59.555 43.478 24.55 0.00 41.94 3.67
612 715 3.698040 AGCCAAACATATGCTCTCTTTGG 59.302 43.478 21.84 21.84 42.54 3.28
640 1547 2.579207 TCATCTTAGCCGTACAGCAC 57.421 50.000 3.48 0.00 34.23 4.40
641 1548 4.522789 TCATATCATCTTAGCCGTACAGCA 59.477 41.667 3.48 0.00 34.23 4.41
643 1550 7.148641 ACTTTCATATCATCTTAGCCGTACAG 58.851 38.462 0.00 0.00 0.00 2.74
644 1551 7.050970 ACTTTCATATCATCTTAGCCGTACA 57.949 36.000 0.00 0.00 0.00 2.90
728 1639 5.927819 TCAATATCATCTACATGCACACCA 58.072 37.500 0.00 0.00 0.00 4.17
799 1710 5.127519 TCTTGCTTTACATTTATGCAGGCAT 59.872 36.000 11.94 11.94 40.19 4.40
836 1747 6.027025 AGAGAGAGAGAGAGAGGACTACTA 57.973 45.833 0.00 0.00 0.00 1.82
838 1749 4.649674 TGAGAGAGAGAGAGAGAGGACTAC 59.350 50.000 0.00 0.00 0.00 2.73
839 1750 4.878968 TGAGAGAGAGAGAGAGAGGACTA 58.121 47.826 0.00 0.00 0.00 2.59
841 1752 4.192317 GTTGAGAGAGAGAGAGAGAGGAC 58.808 52.174 0.00 0.00 0.00 3.85
842 1753 3.199946 GGTTGAGAGAGAGAGAGAGAGGA 59.800 52.174 0.00 0.00 0.00 3.71
843 1754 3.545703 GGTTGAGAGAGAGAGAGAGAGG 58.454 54.545 0.00 0.00 0.00 3.69
963 1923 3.002791 CTGTACAAGTATGCCTGTGTGG 58.997 50.000 0.00 0.00 39.35 4.17
979 1939 4.371855 TCAGTATGTAGCACAGCTGTAC 57.628 45.455 21.20 14.98 36.81 2.90
1032 1992 0.032615 ATGAGGAGGAGAAGCCGAGT 60.033 55.000 0.00 0.00 43.43 4.18
1050 2013 1.673808 GGTTAGGAGTCACCGGCGAT 61.674 60.000 9.30 0.00 44.74 4.58
1107 2070 2.432628 CCGTGGAGTGGAGCGAAC 60.433 66.667 0.00 0.00 0.00 3.95
1113 2076 2.121832 ATGTCCCCGTGGAGTGGA 59.878 61.111 0.00 0.00 42.85 4.02
1124 2087 4.856801 ATCGCGGTGGCATGTCCC 62.857 66.667 6.13 0.00 39.92 4.46
1245 2238 1.202722 TGCTGCATGGACATCATCGAT 60.203 47.619 0.00 0.00 32.92 3.59
1290 2289 2.366435 GCAGGGCCCAGGTACCTA 60.366 66.667 27.56 0.00 32.22 3.08
1305 2304 4.399395 CCAAGCAGCTCCCTCGCA 62.399 66.667 0.00 0.00 0.00 5.10
1320 2319 1.372683 GAGGCTGCAGAACTCACCA 59.627 57.895 25.18 0.00 0.00 4.17
1321 2320 1.739562 CGAGGCTGCAGAACTCACC 60.740 63.158 27.60 15.89 0.00 4.02
1456 2458 1.539065 CCTCTCGAGCGCCATGTAATT 60.539 52.381 7.81 0.00 0.00 1.40
1479 2481 1.075659 GGACAAGAGCCTGGCCTTT 59.924 57.895 16.57 7.28 41.84 3.11
1492 2494 6.636454 ACCTACCTCTTTAATCATGGACAA 57.364 37.500 0.00 0.00 0.00 3.18
1504 2506 4.802918 GCATGTGTGTGTACCTACCTCTTT 60.803 45.833 0.00 0.00 0.00 2.52
1525 2527 4.651778 AGCAACAAGAACAATAGTAGGCA 58.348 39.130 0.00 0.00 0.00 4.75
1605 2616 0.898320 GCAAGTCAGGGTGAGAGCTA 59.102 55.000 0.00 0.00 0.00 3.32
1644 2656 3.877508 ACCAAAGTAAGTGCTCACAAGAC 59.122 43.478 2.63 0.00 0.00 3.01
1678 2690 6.710295 TGTCGACATATTTATGGGATTCCTTG 59.290 38.462 15.76 0.00 38.00 3.61
1725 2738 8.762645 TGAGGATGAAACTGTATCTATCACTTT 58.237 33.333 0.00 0.00 0.00 2.66
1726 2739 8.200792 GTGAGGATGAAACTGTATCTATCACTT 58.799 37.037 14.10 0.00 37.22 3.16
1727 2740 7.563188 AGTGAGGATGAAACTGTATCTATCACT 59.437 37.037 16.21 16.21 40.83 3.41
1759 2782 7.272978 TGCCTAGATAGGATGAAAAGTTGTAC 58.727 38.462 10.18 0.00 46.63 2.90
1870 2896 1.003118 ACCAGATGCAGCTCCGTAAAA 59.997 47.619 0.00 0.00 0.00 1.52
2067 3113 7.151976 TGTCCACCTTCATAATACATGATACG 58.848 38.462 0.00 0.00 0.00 3.06
2217 3263 3.472943 GAGCGCATCCCTCAGGCAT 62.473 63.158 11.47 0.00 0.00 4.40
2262 3308 1.358830 CCCTGCTCTCCCCCATTGAT 61.359 60.000 0.00 0.00 0.00 2.57
2289 3335 2.406616 CGGTGCTACCAACATGCCC 61.407 63.158 0.00 0.00 38.47 5.36
2313 3359 2.613506 CGGCGTGTCCCCTTTTGAC 61.614 63.158 0.00 0.00 0.00 3.18
2509 3555 7.582667 TGACGTTGAAGATGGAGATAGATTA 57.417 36.000 0.00 0.00 0.00 1.75
2609 3655 5.596836 AAAATTGCACTCTTTGGACAAGA 57.403 34.783 0.00 0.00 0.00 3.02
2612 3658 4.261994 GCCTAAAATTGCACTCTTTGGACA 60.262 41.667 0.00 0.00 0.00 4.02
2613 3659 4.237724 GCCTAAAATTGCACTCTTTGGAC 58.762 43.478 0.00 0.00 0.00 4.02
2674 3747 6.723977 TGATTTATTTTGCCAAGTACCTTCCT 59.276 34.615 0.00 0.00 0.00 3.36
2698 3771 8.567948 ACCTGTTAATTCACATAGTTCTGTTTG 58.432 33.333 0.00 0.00 0.00 2.93
2729 3802 4.997395 AGAATGTGCTTGTCTACGTCATTT 59.003 37.500 0.00 0.00 0.00 2.32
2765 3838 1.992557 ACCTGGCTTCTTGATAACCCA 59.007 47.619 0.00 0.00 0.00 4.51
2786 3859 4.158384 CGGTGCTCATGTTTGAATAACAC 58.842 43.478 0.00 0.00 32.37 3.32
2992 4065 4.814294 CCGCTAGTGCCACCGTCC 62.814 72.222 0.00 0.00 35.36 4.79
3008 4081 0.240145 GCAAGTTCGCCTTTACCACC 59.760 55.000 0.00 0.00 0.00 4.61
3013 4086 0.398696 TGGGAGCAAGTTCGCCTTTA 59.601 50.000 0.00 0.00 0.00 1.85
3015 4088 1.600916 GTGGGAGCAAGTTCGCCTT 60.601 57.895 0.00 0.00 0.00 4.35
3043 4116 1.067364 CATGCTGCCAAGTTGTTGTGA 59.933 47.619 1.45 0.00 30.95 3.58
3044 4117 1.493772 CATGCTGCCAAGTTGTTGTG 58.506 50.000 1.45 0.00 30.95 3.33
3166 4239 4.235079 TGGGTAGTCATGGAGAAATTGG 57.765 45.455 0.00 0.00 0.00 3.16
3194 4267 2.512286 GCTGCCGCTATCACTGCA 60.512 61.111 0.00 0.00 0.00 4.41
3215 4288 0.035439 CCCAAGGTAAGCGACACCAT 60.035 55.000 7.10 0.00 38.62 3.55
3241 4314 0.887387 ATGTAAACGCCCGTTGCTGT 60.887 50.000 6.84 0.00 38.47 4.40
3249 4322 2.757056 GCCGGTGATGTAAACGCCC 61.757 63.158 1.90 0.00 35.62 6.13
3257 4330 0.394192 ATGATCATCGCCGGTGATGT 59.606 50.000 41.92 32.77 44.82 3.06
3359 4432 3.133901 TCCTAGCCTACGAAATCATGCAA 59.866 43.478 0.00 0.00 0.00 4.08
3386 4459 5.755861 GCACTAGATTATGTTCTTGTCTCCC 59.244 44.000 0.00 0.00 30.80 4.30
3497 4570 8.682710 TGGTCATAGCCATTTGTAATTAACTTC 58.317 33.333 0.00 0.00 32.81 3.01
3545 4618 5.074102 ACCCTAGGGCTTACTACAAGTTTTT 59.926 40.000 28.88 0.00 39.32 1.94
3559 4650 4.078513 AGTTCTCACTAATACCCTAGGGCT 60.079 45.833 28.88 17.06 39.32 5.19
3560 4651 4.224762 AGTTCTCACTAATACCCTAGGGC 58.775 47.826 28.88 6.42 39.32 5.19
3561 4652 6.494146 CCTTAGTTCTCACTAATACCCTAGGG 59.506 46.154 27.36 27.36 43.29 3.53
3562 4653 7.296098 TCCTTAGTTCTCACTAATACCCTAGG 58.704 42.308 0.06 0.06 43.29 3.02
3563 4654 8.763984 TTCCTTAGTTCTCACTAATACCCTAG 57.236 38.462 0.00 0.00 43.29 3.02
3564 4655 9.144298 CATTCCTTAGTTCTCACTAATACCCTA 57.856 37.037 0.00 0.00 43.29 3.53
3565 4656 7.071321 CCATTCCTTAGTTCTCACTAATACCCT 59.929 40.741 0.00 0.00 43.29 4.34
3566 4657 7.217906 CCATTCCTTAGTTCTCACTAATACCC 58.782 42.308 0.00 0.00 43.29 3.69
3567 4658 7.217906 CCCATTCCTTAGTTCTCACTAATACC 58.782 42.308 0.00 0.00 43.29 2.73
3568 4659 7.147532 ACCCCATTCCTTAGTTCTCACTAATAC 60.148 40.741 0.00 0.00 43.29 1.89
3569 4660 6.906901 ACCCCATTCCTTAGTTCTCACTAATA 59.093 38.462 0.00 0.00 43.29 0.98
3570 4661 5.731678 ACCCCATTCCTTAGTTCTCACTAAT 59.268 40.000 0.00 0.00 43.29 1.73
3571 4662 5.098663 ACCCCATTCCTTAGTTCTCACTAA 58.901 41.667 0.00 0.00 42.27 2.24
3572 4663 4.695606 ACCCCATTCCTTAGTTCTCACTA 58.304 43.478 0.00 0.00 34.06 2.74
3573 4664 3.519913 GACCCCATTCCTTAGTTCTCACT 59.480 47.826 0.00 0.00 36.99 3.41
3574 4665 3.519913 AGACCCCATTCCTTAGTTCTCAC 59.480 47.826 0.00 0.00 0.00 3.51
3575 4666 3.775316 GAGACCCCATTCCTTAGTTCTCA 59.225 47.826 0.00 0.00 0.00 3.27
3576 4667 3.775316 TGAGACCCCATTCCTTAGTTCTC 59.225 47.826 0.00 0.00 0.00 2.87
3591 4682 6.820152 ACATAGGTATTTTTACGTTGAGACCC 59.180 38.462 0.00 0.00 0.00 4.46
3652 4743 6.590292 CCGCATATATAGGACAAAAGAACGAT 59.410 38.462 0.00 0.00 0.00 3.73
3675 4766 2.224314 GTCAAGAGAAGAAGCAAACCCG 59.776 50.000 0.00 0.00 0.00 5.28
3814 4910 7.288810 ACAACAAATATCCACTTGATTGTGT 57.711 32.000 0.00 0.00 36.30 3.72
3834 4931 6.749118 GCCAGATGTTCATCTATTTCAACAAC 59.251 38.462 13.87 0.00 32.66 3.32
3836 4933 5.945191 TGCCAGATGTTCATCTATTTCAACA 59.055 36.000 13.87 0.00 33.42 3.33
3856 4953 8.729805 AAACTTTTTAGAAATCATTTGTGCCA 57.270 26.923 0.00 0.00 0.00 4.92
3929 7424 8.842358 TTTTAAACTACAAGTGTCCCTATGAG 57.158 34.615 0.00 0.00 0.00 2.90
3961 8877 2.544685 CCTAGAACTGAGAACATGGCG 58.455 52.381 0.00 0.00 0.00 5.69
3978 8894 0.037975 GTCGAAACCGGTGAAGCCTA 60.038 55.000 8.52 0.00 34.25 3.93
3979 8895 1.301479 GTCGAAACCGGTGAAGCCT 60.301 57.895 8.52 0.00 34.25 4.58
3990 8906 5.116882 AGAGCCCATGTAAATAGTCGAAAC 58.883 41.667 0.00 0.00 0.00 2.78
3994 8910 5.844004 ACTAAGAGCCCATGTAAATAGTCG 58.156 41.667 0.00 0.00 0.00 4.18
3995 8911 9.609346 TTAAACTAAGAGCCCATGTAAATAGTC 57.391 33.333 0.00 0.00 0.00 2.59
4045 8961 7.684062 ACATGACGCATTTATATCTTTTTGC 57.316 32.000 0.00 0.00 0.00 3.68
4084 9001 7.396540 AAATCATAGCCACAAGGTTTCTAAG 57.603 36.000 0.00 0.00 37.19 2.18
4094 9011 6.154203 TGTTGTGAAAAATCATAGCCACAA 57.846 33.333 0.00 0.00 39.12 3.33
4095 9012 5.781210 TGTTGTGAAAAATCATAGCCACA 57.219 34.783 0.00 0.00 33.38 4.17
4127 9044 9.884465 GCTATTTAAAACTATGATTAGCACAGG 57.116 33.333 7.85 0.00 0.00 4.00
4131 9048 8.067784 GCGTGCTATTTAAAACTATGATTAGCA 58.932 33.333 10.37 10.37 34.92 3.49
4132 9049 8.283291 AGCGTGCTATTTAAAACTATGATTAGC 58.717 33.333 0.00 6.34 0.00 3.09
4136 9053 8.283291 GCTTAGCGTGCTATTTAAAACTATGAT 58.717 33.333 1.86 0.00 0.00 2.45
4138 9055 6.851330 GGCTTAGCGTGCTATTTAAAACTATG 59.149 38.462 1.86 0.00 0.00 2.23
4139 9056 6.766467 AGGCTTAGCGTGCTATTTAAAACTAT 59.234 34.615 1.86 0.00 0.00 2.12
4140 9057 6.110707 AGGCTTAGCGTGCTATTTAAAACTA 58.889 36.000 1.86 0.00 0.00 2.24
4141 9058 4.941873 AGGCTTAGCGTGCTATTTAAAACT 59.058 37.500 1.86 0.00 0.00 2.66
4143 9060 5.890424 AAGGCTTAGCGTGCTATTTAAAA 57.110 34.783 0.00 0.00 0.00 1.52
4144 9061 5.890424 AAAGGCTTAGCGTGCTATTTAAA 57.110 34.783 0.00 0.00 0.00 1.52
4145 9062 5.890424 AAAAGGCTTAGCGTGCTATTTAA 57.110 34.783 0.00 0.00 0.00 1.52
4146 9063 5.007332 GCTAAAAGGCTTAGCGTGCTATTTA 59.993 40.000 6.27 3.93 38.12 1.40
4147 9064 4.201920 GCTAAAAGGCTTAGCGTGCTATTT 60.202 41.667 6.27 2.98 38.12 1.40
4148 9065 3.312697 GCTAAAAGGCTTAGCGTGCTATT 59.687 43.478 6.27 0.00 38.12 1.73
4149 9066 2.872858 GCTAAAAGGCTTAGCGTGCTAT 59.127 45.455 6.27 0.00 38.12 2.97
4150 9067 2.277084 GCTAAAAGGCTTAGCGTGCTA 58.723 47.619 6.27 0.00 38.12 3.49
4151 9068 1.087501 GCTAAAAGGCTTAGCGTGCT 58.912 50.000 6.27 0.00 38.12 4.40
4152 9069 3.605952 GCTAAAAGGCTTAGCGTGC 57.394 52.632 6.27 0.00 38.12 5.34
4156 9073 0.733150 CCACCGCTAAAAGGCTTAGC 59.267 55.000 11.22 11.22 42.82 3.09
4157 9074 2.007608 GTCCACCGCTAAAAGGCTTAG 58.992 52.381 0.00 0.00 0.00 2.18
4158 9075 1.339342 GGTCCACCGCTAAAAGGCTTA 60.339 52.381 0.00 0.00 0.00 3.09
4159 9076 0.608308 GGTCCACCGCTAAAAGGCTT 60.608 55.000 0.00 0.00 0.00 4.35
4160 9077 1.002502 GGTCCACCGCTAAAAGGCT 60.003 57.895 0.00 0.00 0.00 4.58
4161 9078 1.002502 AGGTCCACCGCTAAAAGGC 60.003 57.895 0.00 0.00 42.08 4.35
4162 9079 0.613777 AGAGGTCCACCGCTAAAAGG 59.386 55.000 0.00 0.00 44.55 3.11
4163 9080 2.028020 AGAAGAGGTCCACCGCTAAAAG 60.028 50.000 2.04 0.00 45.67 2.27
4164 9081 1.975680 AGAAGAGGTCCACCGCTAAAA 59.024 47.619 2.04 0.00 45.67 1.52
4165 9082 1.640917 AGAAGAGGTCCACCGCTAAA 58.359 50.000 2.04 0.00 45.67 1.85
4166 9083 2.519771 TAGAAGAGGTCCACCGCTAA 57.480 50.000 2.04 0.00 45.67 3.09
4167 9084 2.376109 CTTAGAAGAGGTCCACCGCTA 58.624 52.381 2.04 0.00 45.67 4.26
4169 9086 0.460459 GCTTAGAAGAGGTCCACCGC 60.460 60.000 0.00 0.00 42.08 5.68
4170 9087 0.179134 CGCTTAGAAGAGGTCCACCG 60.179 60.000 0.00 0.00 42.08 4.94
4171 9088 0.460459 GCGCTTAGAAGAGGTCCACC 60.460 60.000 0.00 0.00 0.00 4.61
4172 9089 0.533032 AGCGCTTAGAAGAGGTCCAC 59.467 55.000 2.64 0.00 30.77 4.02
4173 9090 2.139323 TAGCGCTTAGAAGAGGTCCA 57.861 50.000 18.68 0.00 37.68 4.02
4174 9091 3.366577 GCTATAGCGCTTAGAAGAGGTCC 60.367 52.174 18.68 0.00 37.68 4.46
4175 9092 3.253677 TGCTATAGCGCTTAGAAGAGGTC 59.746 47.826 18.68 3.66 45.83 3.85
4176 9093 3.223435 TGCTATAGCGCTTAGAAGAGGT 58.777 45.455 18.68 3.29 45.83 3.85
4177 9094 3.924918 TGCTATAGCGCTTAGAAGAGG 57.075 47.619 18.68 0.00 45.83 3.69
4199 9116 8.682016 CAAACATTTTAAATAGCACGCTATAGC 58.318 33.333 15.09 15.09 38.20 2.97
4200 9117 9.716507 ACAAACATTTTAAATAGCACGCTATAG 57.283 29.630 11.80 0.00 38.20 1.31
4202 9119 8.980143 AACAAACATTTTAAATAGCACGCTAT 57.020 26.923 5.72 5.72 40.63 2.97
4203 9120 8.076781 TGAACAAACATTTTAAATAGCACGCTA 58.923 29.630 0.39 0.39 0.00 4.26
4204 9121 6.920758 TGAACAAACATTTTAAATAGCACGCT 59.079 30.769 0.00 0.00 0.00 5.07
4205 9122 7.099666 TGAACAAACATTTTAAATAGCACGC 57.900 32.000 0.00 0.00 0.00 5.34
4206 9123 8.698854 ACATGAACAAACATTTTAAATAGCACG 58.301 29.630 0.00 0.00 0.00 5.34
4207 9124 9.796062 CACATGAACAAACATTTTAAATAGCAC 57.204 29.630 0.00 0.00 0.00 4.40
4208 9125 9.539825 ACACATGAACAAACATTTTAAATAGCA 57.460 25.926 0.00 0.00 0.00 3.49
4216 9133 8.944029 TGATTCAAACACATGAACAAACATTTT 58.056 25.926 0.00 0.00 41.78 1.82
4217 9134 8.489990 TGATTCAAACACATGAACAAACATTT 57.510 26.923 0.00 0.00 41.78 2.32
4218 9135 8.489990 TTGATTCAAACACATGAACAAACATT 57.510 26.923 0.00 0.00 41.78 2.71
4219 9136 8.489990 TTTGATTCAAACACATGAACAAACAT 57.510 26.923 7.74 0.00 41.78 2.71
4220 9137 7.601886 ACTTTGATTCAAACACATGAACAAACA 59.398 29.630 7.74 0.00 41.78 2.83
4221 9138 7.962917 ACTTTGATTCAAACACATGAACAAAC 58.037 30.769 7.74 0.00 41.78 2.93
4222 9139 7.277539 GGACTTTGATTCAAACACATGAACAAA 59.722 33.333 7.74 12.57 41.78 2.83
4223 9140 6.756074 GGACTTTGATTCAAACACATGAACAA 59.244 34.615 7.74 0.00 41.78 2.83
4224 9141 6.272318 GGACTTTGATTCAAACACATGAACA 58.728 36.000 7.74 0.00 41.78 3.18
4225 9142 5.691754 GGGACTTTGATTCAAACACATGAAC 59.308 40.000 7.74 0.30 41.78 3.18
4226 9143 5.598005 AGGGACTTTGATTCAAACACATGAA 59.402 36.000 7.74 0.00 38.72 2.57
4227 9144 5.139727 AGGGACTTTGATTCAAACACATGA 58.860 37.500 7.74 0.00 27.25 3.07
4228 9145 5.458041 AGGGACTTTGATTCAAACACATG 57.542 39.130 7.74 1.35 27.25 3.21
4245 9162 0.460459 GAGGTCTTGCGCTAAGGGAC 60.460 60.000 9.73 5.00 37.01 4.46
4246 9163 0.614979 AGAGGTCTTGCGCTAAGGGA 60.615 55.000 9.73 0.00 37.01 4.20
4247 9164 0.250513 AAGAGGTCTTGCGCTAAGGG 59.749 55.000 9.73 0.00 37.01 3.95
4248 9165 1.363744 CAAGAGGTCTTGCGCTAAGG 58.636 55.000 9.73 0.00 45.59 2.69
4257 9174 5.349809 GCTATAGCGTTTACAAGAGGTCTT 58.650 41.667 9.40 0.00 36.45 3.01
4258 9175 4.934515 GCTATAGCGTTTACAAGAGGTCT 58.065 43.478 9.40 0.00 0.00 3.85
4273 9190 4.758165 TGGTTTTAAATAGCCCGCTATAGC 59.242 41.667 15.09 15.09 38.20 2.97
4274 9191 6.128007 CCATGGTTTTAAATAGCCCGCTATAG 60.128 42.308 9.56 0.00 38.20 1.31
4275 9192 5.708230 CCATGGTTTTAAATAGCCCGCTATA 59.292 40.000 9.56 0.00 38.20 1.31
4276 9193 4.522789 CCATGGTTTTAAATAGCCCGCTAT 59.477 41.667 2.57 3.31 40.63 2.97
4277 9194 3.886505 CCATGGTTTTAAATAGCCCGCTA 59.113 43.478 2.57 0.00 0.00 4.26
4278 9195 2.693074 CCATGGTTTTAAATAGCCCGCT 59.307 45.455 2.57 0.00 0.00 5.52
4279 9196 2.429250 ACCATGGTTTTAAATAGCCCGC 59.571 45.455 13.00 0.00 0.00 6.13
4280 9197 3.736740 GCACCATGGTTTTAAATAGCCCG 60.737 47.826 16.84 0.00 0.00 6.13
4281 9198 3.450817 AGCACCATGGTTTTAAATAGCCC 59.549 43.478 16.84 0.00 0.00 5.19
4282 9199 4.736126 AGCACCATGGTTTTAAATAGCC 57.264 40.909 16.84 0.00 0.00 3.93
4283 9200 8.410141 TGTATTAGCACCATGGTTTTAAATAGC 58.590 33.333 16.84 13.15 0.00 2.97
4286 9203 8.811994 AGTTGTATTAGCACCATGGTTTTAAAT 58.188 29.630 16.84 14.49 0.00 1.40
4287 9204 8.184304 AGTTGTATTAGCACCATGGTTTTAAA 57.816 30.769 16.84 7.90 0.00 1.52
4288 9205 7.768807 AGTTGTATTAGCACCATGGTTTTAA 57.231 32.000 16.84 16.52 0.00 1.52
4289 9206 8.898761 CATAGTTGTATTAGCACCATGGTTTTA 58.101 33.333 16.84 7.87 0.00 1.52
4290 9207 7.613801 TCATAGTTGTATTAGCACCATGGTTTT 59.386 33.333 16.84 8.98 0.00 2.43
4291 9208 7.067008 GTCATAGTTGTATTAGCACCATGGTTT 59.933 37.037 16.84 9.39 0.00 3.27
4292 9209 6.542370 GTCATAGTTGTATTAGCACCATGGTT 59.458 38.462 16.84 4.11 0.00 3.67
4293 9210 6.055588 GTCATAGTTGTATTAGCACCATGGT 58.944 40.000 13.00 13.00 0.00 3.55
4294 9211 6.203530 CAGTCATAGTTGTATTAGCACCATGG 59.796 42.308 11.19 11.19 0.00 3.66
4295 9212 6.203530 CCAGTCATAGTTGTATTAGCACCATG 59.796 42.308 0.00 0.00 0.00 3.66
4296 9213 6.099701 TCCAGTCATAGTTGTATTAGCACCAT 59.900 38.462 0.00 0.00 0.00 3.55
4297 9214 5.423931 TCCAGTCATAGTTGTATTAGCACCA 59.576 40.000 0.00 0.00 0.00 4.17
4298 9215 5.914033 TCCAGTCATAGTTGTATTAGCACC 58.086 41.667 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.