Multiple sequence alignment - TraesCS7D01G018700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G018700 chr7D 100.000 5507 0 0 1 5507 8257016 8251510 0.000000e+00 10170
1 TraesCS7D01G018700 chr7D 91.520 3467 239 22 320 3757 7923670 7927110 0.000000e+00 4723
2 TraesCS7D01G018700 chr7D 85.641 3496 476 14 1002 4489 7548423 7551900 0.000000e+00 3651
3 TraesCS7D01G018700 chr7D 90.492 2682 221 19 947 3602 8052766 8055439 0.000000e+00 3509
4 TraesCS7D01G018700 chr7D 88.799 2723 272 24 954 3661 7561054 7563758 0.000000e+00 3308
5 TraesCS7D01G018700 chr7D 85.109 1746 242 14 2757 4492 8178780 8180517 0.000000e+00 1768
6 TraesCS7D01G018700 chr7D 83.942 1725 265 9 2763 4484 8235208 8236923 0.000000e+00 1640
7 TraesCS7D01G018700 chr7D 83.024 1832 274 17 2759 4584 7599062 7600862 0.000000e+00 1626
8 TraesCS7D01G018700 chr7D 82.450 1812 258 28 2928 4696 8077210 8079004 0.000000e+00 1530
9 TraesCS7D01G018700 chr7D 84.542 524 50 17 174 675 8232730 8233244 1.780000e-134 490
10 TraesCS7D01G018700 chr7D 75.622 603 86 37 166 717 8037716 8038308 5.510000e-60 243
11 TraesCS7D01G018700 chr7D 82.051 156 25 3 4280 4434 8186796 8186949 4.480000e-26 130
12 TraesCS7D01G018700 chr7D 82.993 147 10 6 523 654 7749513 7749659 9.690000e-23 119
13 TraesCS7D01G018700 chr7A 96.923 4745 115 10 5 4745 8696036 8691319 0.000000e+00 7925
14 TraesCS7D01G018700 chr7A 84.070 3710 543 31 1002 4687 3432079 3428394 0.000000e+00 3533
15 TraesCS7D01G018700 chr7A 85.802 1796 229 19 947 2723 8653703 8655491 0.000000e+00 1881
16 TraesCS7D01G018700 chr7A 88.952 525 30 11 4993 5507 8690371 8689865 1.680000e-174 623
17 TraesCS7D01G018700 chr7A 83.991 456 43 12 507 933 8589261 8589715 1.430000e-110 411
18 TraesCS7D01G018700 chr7A 92.481 133 10 0 4745 4877 706713463 706713595 2.020000e-44 191
19 TraesCS7D01G018700 chr7A 76.724 232 34 8 352 580 8697195 8696981 1.620000e-20 111
20 TraesCS7D01G018700 chr7A 86.275 102 9 3 5400 5499 56217480 56217578 7.540000e-19 106
21 TraesCS7D01G018700 chr3B 86.092 3825 473 38 947 4748 741463140 741466928 0.000000e+00 4061
22 TraesCS7D01G018700 chr4A 87.071 3558 404 32 36 3567 732104522 732108049 0.000000e+00 3971
23 TraesCS7D01G018700 chr4A 85.859 3550 463 23 947 4483 731616869 731613346 0.000000e+00 3738
24 TraesCS7D01G018700 chr4A 86.556 2901 357 21 945 3825 731664158 731661271 0.000000e+00 3166
25 TraesCS7D01G018700 chr4A 84.322 2513 321 43 244 2711 732057852 732060336 0.000000e+00 2390
26 TraesCS7D01G018700 chr4A 88.755 1574 161 11 2194 3762 731502153 731500591 0.000000e+00 1912
27 TraesCS7D01G018700 chr4A 86.093 1733 234 7 2755 4483 731759496 731757767 0.000000e+00 1858
28 TraesCS7D01G018700 chr4A 83.902 410 20 18 419 806 732362001 732362386 3.160000e-92 350
29 TraesCS7D01G018700 chr4A 92.488 213 11 4 154 366 732361797 732362004 3.220000e-77 300
30 TraesCS7D01G018700 chr4A 78.277 267 35 14 589 846 731774764 731774512 3.440000e-32 150
31 TraesCS7D01G018700 chr5B 82.990 582 50 21 268 825 37480972 37481528 1.070000e-131 481
32 TraesCS7D01G018700 chr4D 94.030 134 8 0 4745 4878 413008415 413008282 2.600000e-48 204
33 TraesCS7D01G018700 chr2D 93.284 134 8 1 4745 4878 557146855 557146723 4.350000e-46 196
34 TraesCS7D01G018700 chr3A 90.909 143 12 1 4745 4886 340026615 340026473 2.020000e-44 191
35 TraesCS7D01G018700 chr3A 91.045 134 10 2 4745 4877 595760096 595759964 4.380000e-41 180
36 TraesCS7D01G018700 chr6B 90.370 135 13 0 4745 4879 672132754 672132888 1.580000e-40 178
37 TraesCS7D01G018700 chr7B 89.313 131 14 0 4745 4875 87206422 87206292 1.230000e-36 165
38 TraesCS7D01G018700 chr5A 87.023 131 7 5 4745 4875 496285726 496285606 7.440000e-29 139
39 TraesCS7D01G018700 chr5A 91.398 93 8 0 4745 4837 550650565 550650473 1.610000e-25 128
40 TraesCS7D01G018700 chr5D 85.821 134 9 2 4745 4878 314893190 314893067 3.460000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G018700 chr7D 8251510 8257016 5506 True 10170.000000 10170 100.000 1 5507 1 chr7D.!!$R1 5506
1 TraesCS7D01G018700 chr7D 7923670 7927110 3440 False 4723.000000 4723 91.520 320 3757 1 chr7D.!!$F5 3437
2 TraesCS7D01G018700 chr7D 7548423 7551900 3477 False 3651.000000 3651 85.641 1002 4489 1 chr7D.!!$F1 3487
3 TraesCS7D01G018700 chr7D 8052766 8055439 2673 False 3509.000000 3509 90.492 947 3602 1 chr7D.!!$F7 2655
4 TraesCS7D01G018700 chr7D 7561054 7563758 2704 False 3308.000000 3308 88.799 954 3661 1 chr7D.!!$F2 2707
5 TraesCS7D01G018700 chr7D 8178780 8180517 1737 False 1768.000000 1768 85.109 2757 4492 1 chr7D.!!$F9 1735
6 TraesCS7D01G018700 chr7D 7599062 7600862 1800 False 1626.000000 1626 83.024 2759 4584 1 chr7D.!!$F3 1825
7 TraesCS7D01G018700 chr7D 8077210 8079004 1794 False 1530.000000 1530 82.450 2928 4696 1 chr7D.!!$F8 1768
8 TraesCS7D01G018700 chr7D 8232730 8236923 4193 False 1065.000000 1640 84.242 174 4484 2 chr7D.!!$F11 4310
9 TraesCS7D01G018700 chr7D 8037716 8038308 592 False 243.000000 243 75.622 166 717 1 chr7D.!!$F6 551
10 TraesCS7D01G018700 chr7A 3428394 3432079 3685 True 3533.000000 3533 84.070 1002 4687 1 chr7A.!!$R1 3685
11 TraesCS7D01G018700 chr7A 8689865 8697195 7330 True 2886.333333 7925 87.533 5 5507 3 chr7A.!!$R2 5502
12 TraesCS7D01G018700 chr7A 8653703 8655491 1788 False 1881.000000 1881 85.802 947 2723 1 chr7A.!!$F2 1776
13 TraesCS7D01G018700 chr3B 741463140 741466928 3788 False 4061.000000 4061 86.092 947 4748 1 chr3B.!!$F1 3801
14 TraesCS7D01G018700 chr4A 732104522 732108049 3527 False 3971.000000 3971 87.071 36 3567 1 chr4A.!!$F2 3531
15 TraesCS7D01G018700 chr4A 731613346 731616869 3523 True 3738.000000 3738 85.859 947 4483 1 chr4A.!!$R2 3536
16 TraesCS7D01G018700 chr4A 731661271 731664158 2887 True 3166.000000 3166 86.556 945 3825 1 chr4A.!!$R3 2880
17 TraesCS7D01G018700 chr4A 732057852 732060336 2484 False 2390.000000 2390 84.322 244 2711 1 chr4A.!!$F1 2467
18 TraesCS7D01G018700 chr4A 731500591 731502153 1562 True 1912.000000 1912 88.755 2194 3762 1 chr4A.!!$R1 1568
19 TraesCS7D01G018700 chr4A 731757767 731759496 1729 True 1858.000000 1858 86.093 2755 4483 1 chr4A.!!$R4 1728
20 TraesCS7D01G018700 chr4A 732361797 732362386 589 False 325.000000 350 88.195 154 806 2 chr4A.!!$F3 652
21 TraesCS7D01G018700 chr5B 37480972 37481528 556 False 481.000000 481 82.990 268 825 1 chr5B.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 1223 2.305635 TCTTGCCTATTCCTGCAGAACA 59.694 45.455 17.39 0.0 38.95 3.18 F
861 2090 2.377193 TGTACAGTAGGCAAAACCCCAT 59.623 45.455 0.00 0.0 40.58 4.00 F
2095 3366 0.746204 GGAGCAAGCAGAGTTAGCCC 60.746 60.000 0.00 0.0 0.00 5.19 F
2665 3948 2.813754 TCAAAGGCTGAATTGGAACGAG 59.186 45.455 0.00 0.0 0.00 4.18 F
3827 5129 5.653255 ATGTGTATCCATTTAGGCTCCTT 57.347 39.130 0.00 0.0 37.29 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1319 2577 1.271379 CCTTGTGGGTAGTGGACTTGG 60.271 57.143 0.00 0.0 0.00 3.61 R
2665 3948 1.202348 GCCTTTGCATAACCCACTGAC 59.798 52.381 0.00 0.0 37.47 3.51 R
3827 5129 0.248012 TAAGCGGACGAGAAATGGCA 59.752 50.000 0.00 0.0 0.00 4.92 R
4189 5491 0.249911 ACACTCCGGCACTCAGAAAC 60.250 55.000 0.00 0.0 0.00 2.78 R
4913 6274 0.109153 TCTGCTGCTGGTTGATGTGT 59.891 50.000 6.69 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 1200 3.202906 TGGAGCAGTAACTGACAACAAC 58.797 45.455 0.00 0.00 32.44 3.32
45 1201 3.202906 GGAGCAGTAACTGACAACAACA 58.797 45.455 0.00 0.00 32.44 3.33
67 1223 2.305635 TCTTGCCTATTCCTGCAGAACA 59.694 45.455 17.39 0.00 38.95 3.18
583 1766 4.220382 TGGTTGCAAATAAATGAGGGACAG 59.780 41.667 0.00 0.00 0.00 3.51
768 1988 4.214119 ACAAGATCAAATCTGGACGTTGTG 59.786 41.667 0.00 0.00 40.13 3.33
861 2090 2.377193 TGTACAGTAGGCAAAACCCCAT 59.623 45.455 0.00 0.00 40.58 4.00
885 2116 9.726232 CATTGGAATCTTTGTGTATGTATCAAG 57.274 33.333 0.00 0.00 0.00 3.02
994 2243 4.383850 TCTGCAGTGCTTAATCTCTCTC 57.616 45.455 17.60 0.00 0.00 3.20
1319 2577 1.766143 CGCCGCCAGTCTAAGATTGC 61.766 60.000 0.00 0.00 0.00 3.56
1711 2975 5.843673 TTTTCAGTTAAAGATGTGGCACA 57.156 34.783 24.36 24.36 0.00 4.57
1789 3053 6.038356 GCTGGAAATAAAAGATGTGACATGG 58.962 40.000 1.23 0.00 0.00 3.66
2095 3366 0.746204 GGAGCAAGCAGAGTTAGCCC 60.746 60.000 0.00 0.00 0.00 5.19
2387 3660 3.195396 TGGATGGCAAACTGCTTTATTCC 59.805 43.478 0.00 0.00 44.28 3.01
2665 3948 2.813754 TCAAAGGCTGAATTGGAACGAG 59.186 45.455 0.00 0.00 0.00 4.18
3036 4323 9.793252 CATCTTTATCTTTTTGGTTGTGATAGG 57.207 33.333 0.00 0.00 0.00 2.57
3827 5129 5.653255 ATGTGTATCCATTTAGGCTCCTT 57.347 39.130 0.00 0.00 37.29 3.36
4590 5920 6.591750 TCTCCCTTGTGTCTAAAACTCTAG 57.408 41.667 0.00 0.00 0.00 2.43
4626 5964 5.296531 CACATTGAATCCGGTGATAACATGA 59.703 40.000 0.00 0.00 33.16 3.07
4627 5965 6.016860 CACATTGAATCCGGTGATAACATGAT 60.017 38.462 0.00 0.00 33.16 2.45
4628 5966 6.016860 ACATTGAATCCGGTGATAACATGATG 60.017 38.462 0.00 0.00 0.00 3.07
4669 6020 3.555139 GTCTGAATCTCTGAAAGCATCCG 59.445 47.826 0.00 0.00 0.00 4.18
4750 6111 3.382832 CCGTCCTCGTCAGGCCTT 61.383 66.667 0.00 0.00 40.12 4.35
4751 6112 2.050350 CCGTCCTCGTCAGGCCTTA 61.050 63.158 0.00 0.00 40.12 2.69
4752 6113 1.392710 CCGTCCTCGTCAGGCCTTAT 61.393 60.000 0.00 0.00 40.12 1.73
4753 6114 0.460311 CGTCCTCGTCAGGCCTTATT 59.540 55.000 0.00 0.00 40.12 1.40
4754 6115 1.536284 CGTCCTCGTCAGGCCTTATTC 60.536 57.143 0.00 0.00 40.12 1.75
4755 6116 0.744874 TCCTCGTCAGGCCTTATTCG 59.255 55.000 0.00 5.87 40.12 3.34
4756 6117 0.249489 CCTCGTCAGGCCTTATTCGG 60.249 60.000 0.00 0.00 30.98 4.30
4757 6118 0.460311 CTCGTCAGGCCTTATTCGGT 59.540 55.000 0.00 0.00 0.00 4.69
4758 6119 0.899720 TCGTCAGGCCTTATTCGGTT 59.100 50.000 0.00 0.00 0.00 4.44
4759 6120 1.006832 CGTCAGGCCTTATTCGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
4760 6121 1.404986 CGTCAGGCCTTATTCGGTTGA 60.405 52.381 0.00 0.00 0.00 3.18
4761 6122 2.280628 GTCAGGCCTTATTCGGTTGAG 58.719 52.381 0.00 0.00 0.00 3.02
4762 6123 1.209504 TCAGGCCTTATTCGGTTGAGG 59.790 52.381 0.00 0.00 0.00 3.86
4763 6124 1.065418 CAGGCCTTATTCGGTTGAGGT 60.065 52.381 0.00 0.00 0.00 3.85
4764 6125 1.065418 AGGCCTTATTCGGTTGAGGTG 60.065 52.381 0.00 0.00 0.00 4.00
4765 6126 1.379527 GCCTTATTCGGTTGAGGTGG 58.620 55.000 0.00 0.00 0.00 4.61
4766 6127 1.339727 GCCTTATTCGGTTGAGGTGGT 60.340 52.381 0.00 0.00 0.00 4.16
4767 6128 2.878526 GCCTTATTCGGTTGAGGTGGTT 60.879 50.000 0.00 0.00 0.00 3.67
4768 6129 3.418047 CCTTATTCGGTTGAGGTGGTTT 58.582 45.455 0.00 0.00 0.00 3.27
4769 6130 3.824443 CCTTATTCGGTTGAGGTGGTTTT 59.176 43.478 0.00 0.00 0.00 2.43
4770 6131 4.279922 CCTTATTCGGTTGAGGTGGTTTTT 59.720 41.667 0.00 0.00 0.00 1.94
4771 6132 3.726291 ATTCGGTTGAGGTGGTTTTTG 57.274 42.857 0.00 0.00 0.00 2.44
4772 6133 2.421751 TCGGTTGAGGTGGTTTTTGA 57.578 45.000 0.00 0.00 0.00 2.69
4773 6134 2.724454 TCGGTTGAGGTGGTTTTTGAA 58.276 42.857 0.00 0.00 0.00 2.69
4774 6135 2.685897 TCGGTTGAGGTGGTTTTTGAAG 59.314 45.455 0.00 0.00 0.00 3.02
4775 6136 2.223711 CGGTTGAGGTGGTTTTTGAAGG 60.224 50.000 0.00 0.00 0.00 3.46
4776 6137 3.028130 GGTTGAGGTGGTTTTTGAAGGA 58.972 45.455 0.00 0.00 0.00 3.36
4777 6138 3.068165 GGTTGAGGTGGTTTTTGAAGGAG 59.932 47.826 0.00 0.00 0.00 3.69
4778 6139 3.943671 TGAGGTGGTTTTTGAAGGAGA 57.056 42.857 0.00 0.00 0.00 3.71
4779 6140 4.243793 TGAGGTGGTTTTTGAAGGAGAA 57.756 40.909 0.00 0.00 0.00 2.87
4780 6141 4.803452 TGAGGTGGTTTTTGAAGGAGAAT 58.197 39.130 0.00 0.00 0.00 2.40
4781 6142 4.584325 TGAGGTGGTTTTTGAAGGAGAATG 59.416 41.667 0.00 0.00 0.00 2.67
4782 6143 4.803452 AGGTGGTTTTTGAAGGAGAATGA 58.197 39.130 0.00 0.00 0.00 2.57
4783 6144 4.584743 AGGTGGTTTTTGAAGGAGAATGAC 59.415 41.667 0.00 0.00 0.00 3.06
4784 6145 4.340950 GGTGGTTTTTGAAGGAGAATGACA 59.659 41.667 0.00 0.00 0.00 3.58
4785 6146 5.507985 GGTGGTTTTTGAAGGAGAATGACAG 60.508 44.000 0.00 0.00 0.00 3.51
4786 6147 4.584325 TGGTTTTTGAAGGAGAATGACAGG 59.416 41.667 0.00 0.00 0.00 4.00
4787 6148 4.021981 GGTTTTTGAAGGAGAATGACAGGG 60.022 45.833 0.00 0.00 0.00 4.45
4788 6149 4.453480 TTTTGAAGGAGAATGACAGGGT 57.547 40.909 0.00 0.00 0.00 4.34
4789 6150 4.453480 TTTGAAGGAGAATGACAGGGTT 57.547 40.909 0.00 0.00 0.00 4.11
4790 6151 4.453480 TTGAAGGAGAATGACAGGGTTT 57.547 40.909 0.00 0.00 0.00 3.27
4791 6152 3.754965 TGAAGGAGAATGACAGGGTTTG 58.245 45.455 0.00 0.00 0.00 2.93
4792 6153 3.394274 TGAAGGAGAATGACAGGGTTTGA 59.606 43.478 0.00 0.00 0.00 2.69
4793 6154 3.710209 AGGAGAATGACAGGGTTTGAG 57.290 47.619 0.00 0.00 0.00 3.02
4794 6155 2.307098 AGGAGAATGACAGGGTTTGAGG 59.693 50.000 0.00 0.00 0.00 3.86
4795 6156 2.619074 GGAGAATGACAGGGTTTGAGGG 60.619 54.545 0.00 0.00 0.00 4.30
4796 6157 1.355720 AGAATGACAGGGTTTGAGGGG 59.644 52.381 0.00 0.00 0.00 4.79
4797 6158 0.409484 AATGACAGGGTTTGAGGGGG 59.591 55.000 0.00 0.00 0.00 5.40
4798 6159 0.477597 ATGACAGGGTTTGAGGGGGA 60.478 55.000 0.00 0.00 0.00 4.81
4799 6160 0.477597 TGACAGGGTTTGAGGGGGAT 60.478 55.000 0.00 0.00 0.00 3.85
4800 6161 0.704664 GACAGGGTTTGAGGGGGATT 59.295 55.000 0.00 0.00 0.00 3.01
4801 6162 1.920351 GACAGGGTTTGAGGGGGATTA 59.080 52.381 0.00 0.00 0.00 1.75
4802 6163 1.923148 ACAGGGTTTGAGGGGGATTAG 59.077 52.381 0.00 0.00 0.00 1.73
4803 6164 2.205342 CAGGGTTTGAGGGGGATTAGA 58.795 52.381 0.00 0.00 0.00 2.10
4804 6165 2.580783 CAGGGTTTGAGGGGGATTAGAA 59.419 50.000 0.00 0.00 0.00 2.10
4805 6166 2.581246 AGGGTTTGAGGGGGATTAGAAC 59.419 50.000 0.00 0.00 0.00 3.01
4806 6167 2.357881 GGGTTTGAGGGGGATTAGAACC 60.358 54.545 0.00 0.00 35.49 3.62
4807 6168 2.357881 GGTTTGAGGGGGATTAGAACCC 60.358 54.545 0.00 0.00 46.59 4.11
4816 6177 4.418973 GGGATTAGAACCCCTACAAGTC 57.581 50.000 0.00 0.00 41.38 3.01
4817 6178 3.778629 GGGATTAGAACCCCTACAAGTCA 59.221 47.826 0.00 0.00 41.38 3.41
4818 6179 4.226620 GGGATTAGAACCCCTACAAGTCAA 59.773 45.833 0.00 0.00 41.38 3.18
4819 6180 5.280830 GGGATTAGAACCCCTACAAGTCAAA 60.281 44.000 0.00 0.00 41.38 2.69
4820 6181 6.243148 GGATTAGAACCCCTACAAGTCAAAA 58.757 40.000 0.00 0.00 0.00 2.44
4821 6182 6.890268 GGATTAGAACCCCTACAAGTCAAAAT 59.110 38.462 0.00 0.00 0.00 1.82
4822 6183 7.396339 GGATTAGAACCCCTACAAGTCAAAATT 59.604 37.037 0.00 0.00 0.00 1.82
4823 6184 7.754851 TTAGAACCCCTACAAGTCAAAATTC 57.245 36.000 0.00 0.00 0.00 2.17
4824 6185 5.953571 AGAACCCCTACAAGTCAAAATTCT 58.046 37.500 0.00 0.00 0.00 2.40
4825 6186 6.004574 AGAACCCCTACAAGTCAAAATTCTC 58.995 40.000 0.00 0.00 0.00 2.87
4826 6187 5.584551 ACCCCTACAAGTCAAAATTCTCT 57.415 39.130 0.00 0.00 0.00 3.10
4827 6188 5.561679 ACCCCTACAAGTCAAAATTCTCTC 58.438 41.667 0.00 0.00 0.00 3.20
4828 6189 4.944317 CCCCTACAAGTCAAAATTCTCTCC 59.056 45.833 0.00 0.00 0.00 3.71
4829 6190 5.514834 CCCCTACAAGTCAAAATTCTCTCCA 60.515 44.000 0.00 0.00 0.00 3.86
4830 6191 6.003950 CCCTACAAGTCAAAATTCTCTCCAA 58.996 40.000 0.00 0.00 0.00 3.53
4831 6192 6.660949 CCCTACAAGTCAAAATTCTCTCCAAT 59.339 38.462 0.00 0.00 0.00 3.16
4832 6193 7.148171 CCCTACAAGTCAAAATTCTCTCCAATC 60.148 40.741 0.00 0.00 0.00 2.67
4833 6194 6.581171 ACAAGTCAAAATTCTCTCCAATCC 57.419 37.500 0.00 0.00 0.00 3.01
4834 6195 6.070656 ACAAGTCAAAATTCTCTCCAATCCA 58.929 36.000 0.00 0.00 0.00 3.41
4835 6196 6.015940 ACAAGTCAAAATTCTCTCCAATCCAC 60.016 38.462 0.00 0.00 0.00 4.02
4836 6197 5.885465 AGTCAAAATTCTCTCCAATCCACT 58.115 37.500 0.00 0.00 0.00 4.00
4837 6198 5.942826 AGTCAAAATTCTCTCCAATCCACTC 59.057 40.000 0.00 0.00 0.00 3.51
4838 6199 5.124617 GTCAAAATTCTCTCCAATCCACTCC 59.875 44.000 0.00 0.00 0.00 3.85
4839 6200 4.934797 AAATTCTCTCCAATCCACTCCA 57.065 40.909 0.00 0.00 0.00 3.86
4840 6201 4.934797 AATTCTCTCCAATCCACTCCAA 57.065 40.909 0.00 0.00 0.00 3.53
4841 6202 5.463051 AATTCTCTCCAATCCACTCCAAT 57.537 39.130 0.00 0.00 0.00 3.16
4842 6203 4.494091 TTCTCTCCAATCCACTCCAATC 57.506 45.455 0.00 0.00 0.00 2.67
4843 6204 3.729108 TCTCTCCAATCCACTCCAATCT 58.271 45.455 0.00 0.00 0.00 2.40
4844 6205 3.708631 TCTCTCCAATCCACTCCAATCTC 59.291 47.826 0.00 0.00 0.00 2.75
4845 6206 2.774234 TCTCCAATCCACTCCAATCTCC 59.226 50.000 0.00 0.00 0.00 3.71
4846 6207 2.776536 CTCCAATCCACTCCAATCTCCT 59.223 50.000 0.00 0.00 0.00 3.69
4847 6208 3.192944 TCCAATCCACTCCAATCTCCTT 58.807 45.455 0.00 0.00 0.00 3.36
4848 6209 3.054139 TCCAATCCACTCCAATCTCCTTG 60.054 47.826 0.00 0.00 34.42 3.61
4849 6210 3.054139 CCAATCCACTCCAATCTCCTTGA 60.054 47.826 0.00 0.00 36.97 3.02
4850 6211 4.197750 CAATCCACTCCAATCTCCTTGAG 58.802 47.826 0.00 0.00 36.97 3.02
4851 6212 3.190383 TCCACTCCAATCTCCTTGAGA 57.810 47.619 0.00 0.00 43.20 3.27
4852 6213 3.102972 TCCACTCCAATCTCCTTGAGAG 58.897 50.000 0.00 0.00 42.26 3.20
4853 6214 2.170187 CCACTCCAATCTCCTTGAGAGG 59.830 54.545 0.00 0.00 42.26 3.69
4865 6226 4.737855 CCTTGAGAGGAGGATTAAACGA 57.262 45.455 0.00 0.00 46.74 3.85
4866 6227 5.086104 CCTTGAGAGGAGGATTAAACGAA 57.914 43.478 0.00 0.00 46.74 3.85
4867 6228 4.870991 CCTTGAGAGGAGGATTAAACGAAC 59.129 45.833 0.00 0.00 46.74 3.95
4868 6229 5.477607 TTGAGAGGAGGATTAAACGAACA 57.522 39.130 0.00 0.00 0.00 3.18
4869 6230 5.477607 TGAGAGGAGGATTAAACGAACAA 57.522 39.130 0.00 0.00 0.00 2.83
4870 6231 5.479306 TGAGAGGAGGATTAAACGAACAAG 58.521 41.667 0.00 0.00 0.00 3.16
4871 6232 4.833390 AGAGGAGGATTAAACGAACAAGG 58.167 43.478 0.00 0.00 0.00 3.61
4872 6233 3.344515 AGGAGGATTAAACGAACAAGGC 58.655 45.455 0.00 0.00 0.00 4.35
4873 6234 2.422479 GGAGGATTAAACGAACAAGGCC 59.578 50.000 0.00 0.00 0.00 5.19
4874 6235 3.344515 GAGGATTAAACGAACAAGGCCT 58.655 45.455 0.00 0.00 0.00 5.19
4875 6236 3.756963 GAGGATTAAACGAACAAGGCCTT 59.243 43.478 13.78 13.78 0.00 4.35
4876 6237 4.913784 AGGATTAAACGAACAAGGCCTTA 58.086 39.130 20.00 0.00 0.00 2.69
4877 6238 5.318630 AGGATTAAACGAACAAGGCCTTAA 58.681 37.500 20.00 6.60 0.00 1.85
4878 6239 5.771165 AGGATTAAACGAACAAGGCCTTAAA 59.229 36.000 20.00 3.20 0.00 1.52
4879 6240 6.265876 AGGATTAAACGAACAAGGCCTTAAAA 59.734 34.615 20.00 4.25 0.00 1.52
4880 6241 6.584942 GGATTAAACGAACAAGGCCTTAAAAG 59.415 38.462 20.00 12.78 0.00 2.27
4881 6242 6.696441 TTAAACGAACAAGGCCTTAAAAGA 57.304 33.333 20.00 0.00 0.00 2.52
4882 6243 4.830826 AACGAACAAGGCCTTAAAAGAG 57.169 40.909 20.00 7.24 0.00 2.85
4883 6244 3.146847 ACGAACAAGGCCTTAAAAGAGG 58.853 45.455 20.00 6.42 39.93 3.69
4884 6245 3.181448 ACGAACAAGGCCTTAAAAGAGGA 60.181 43.478 20.00 0.00 39.25 3.71
4885 6246 3.818773 CGAACAAGGCCTTAAAAGAGGAA 59.181 43.478 20.00 0.00 39.25 3.36
4886 6247 4.083271 CGAACAAGGCCTTAAAAGAGGAAG 60.083 45.833 20.00 3.96 39.25 3.46
4887 6248 3.767711 ACAAGGCCTTAAAAGAGGAAGG 58.232 45.455 20.00 3.39 44.40 3.46
4888 6249 3.397955 ACAAGGCCTTAAAAGAGGAAGGA 59.602 43.478 20.00 0.00 44.36 3.36
4889 6250 4.013050 CAAGGCCTTAAAAGAGGAAGGAG 58.987 47.826 20.00 0.00 44.36 3.69
4890 6251 2.025793 AGGCCTTAAAAGAGGAAGGAGC 60.026 50.000 0.00 0.00 44.36 4.70
4891 6252 2.290960 GGCCTTAAAAGAGGAAGGAGCA 60.291 50.000 4.85 0.00 44.36 4.26
4892 6253 3.013219 GCCTTAAAAGAGGAAGGAGCAG 58.987 50.000 4.85 0.00 44.36 4.24
4893 6254 3.307762 GCCTTAAAAGAGGAAGGAGCAGA 60.308 47.826 4.85 0.00 44.36 4.26
4894 6255 4.512484 CCTTAAAAGAGGAAGGAGCAGAG 58.488 47.826 0.00 0.00 44.36 3.35
4895 6256 4.512484 CTTAAAAGAGGAAGGAGCAGAGG 58.488 47.826 0.00 0.00 0.00 3.69
4896 6257 2.334006 AAAGAGGAAGGAGCAGAGGA 57.666 50.000 0.00 0.00 0.00 3.71
4897 6258 2.566708 AAGAGGAAGGAGCAGAGGAT 57.433 50.000 0.00 0.00 0.00 3.24
4898 6259 1.792115 AGAGGAAGGAGCAGAGGATG 58.208 55.000 0.00 0.00 0.00 3.51
4907 6268 3.482809 CAGAGGATGCACGCTGTG 58.517 61.111 0.00 4.61 36.51 3.66
4908 6269 2.104859 CAGAGGATGCACGCTGTGG 61.105 63.158 10.02 0.00 33.64 4.17
4909 6270 2.821366 GAGGATGCACGCTGTGGG 60.821 66.667 10.02 0.00 33.64 4.61
4921 6282 2.832498 TGTGGGCCGACACATCAA 59.168 55.556 17.62 0.00 45.70 2.57
4922 6283 1.599518 TGTGGGCCGACACATCAAC 60.600 57.895 17.62 0.00 45.70 3.18
4923 6284 2.033448 TGGGCCGACACATCAACC 59.967 61.111 0.00 0.00 0.00 3.77
4924 6285 2.033448 GGGCCGACACATCAACCA 59.967 61.111 0.00 0.00 0.00 3.67
4925 6286 2.040544 GGGCCGACACATCAACCAG 61.041 63.158 0.00 0.00 0.00 4.00
4926 6287 2.690778 GGCCGACACATCAACCAGC 61.691 63.158 0.00 0.00 0.00 4.85
4927 6288 1.965930 GCCGACACATCAACCAGCA 60.966 57.895 0.00 0.00 0.00 4.41
4928 6289 1.915614 GCCGACACATCAACCAGCAG 61.916 60.000 0.00 0.00 0.00 4.24
4929 6290 1.499056 CGACACATCAACCAGCAGC 59.501 57.895 0.00 0.00 0.00 5.25
4930 6291 1.229975 CGACACATCAACCAGCAGCA 61.230 55.000 0.00 0.00 0.00 4.41
4931 6292 0.520404 GACACATCAACCAGCAGCAG 59.480 55.000 0.00 0.00 0.00 4.24
4932 6293 0.109153 ACACATCAACCAGCAGCAGA 59.891 50.000 0.00 0.00 0.00 4.26
4933 6294 0.803117 CACATCAACCAGCAGCAGAG 59.197 55.000 0.00 0.00 0.00 3.35
4934 6295 0.322277 ACATCAACCAGCAGCAGAGG 60.322 55.000 0.00 0.00 0.00 3.69
4935 6296 1.030488 CATCAACCAGCAGCAGAGGG 61.030 60.000 0.00 0.00 0.00 4.30
4936 6297 1.495579 ATCAACCAGCAGCAGAGGGT 61.496 55.000 0.00 0.00 34.43 4.34
4937 6298 1.673665 CAACCAGCAGCAGAGGGTC 60.674 63.158 0.00 0.00 32.01 4.46
4938 6299 1.845205 AACCAGCAGCAGAGGGTCT 60.845 57.895 0.00 0.00 32.01 3.85
4939 6300 1.835927 AACCAGCAGCAGAGGGTCTC 61.836 60.000 0.00 0.00 32.01 3.36
4940 6301 1.988956 CCAGCAGCAGAGGGTCTCT 60.989 63.158 0.00 0.00 42.11 3.10
4941 6302 1.516892 CAGCAGCAGAGGGTCTCTC 59.483 63.158 0.00 0.00 38.99 3.20
4951 6312 3.477210 GAGGGTCTCTCTCTCTCTCTC 57.523 57.143 0.00 0.00 40.34 3.20
4952 6313 3.041946 GAGGGTCTCTCTCTCTCTCTCT 58.958 54.545 0.00 0.00 40.34 3.10
4953 6314 3.041946 AGGGTCTCTCTCTCTCTCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
4954 6315 3.041946 GGGTCTCTCTCTCTCTCTCTCT 58.958 54.545 0.00 0.00 0.00 3.10
4955 6316 3.181461 GGGTCTCTCTCTCTCTCTCTCTG 60.181 56.522 0.00 0.00 0.00 3.35
4956 6317 3.462021 GTCTCTCTCTCTCTCTCTCTGC 58.538 54.545 0.00 0.00 0.00 4.26
4957 6318 2.101415 TCTCTCTCTCTCTCTCTCTGCG 59.899 54.545 0.00 0.00 0.00 5.18
4958 6319 1.138859 TCTCTCTCTCTCTCTCTGCGG 59.861 57.143 0.00 0.00 0.00 5.69
4959 6320 1.138859 CTCTCTCTCTCTCTCTGCGGA 59.861 57.143 0.00 0.00 0.00 5.54
4960 6321 1.138859 TCTCTCTCTCTCTCTGCGGAG 59.861 57.143 16.98 16.98 40.73 4.63
4961 6322 0.180171 TCTCTCTCTCTCTGCGGAGG 59.820 60.000 22.38 12.97 39.86 4.30
4962 6323 0.819259 CTCTCTCTCTCTGCGGAGGG 60.819 65.000 22.38 19.85 41.26 4.30
4963 6324 1.225983 CTCTCTCTCTGCGGAGGGA 59.774 63.158 23.84 23.84 45.89 4.20
4964 6325 0.178992 CTCTCTCTCTGCGGAGGGAT 60.179 60.000 25.44 0.00 46.71 3.85
4965 6326 0.260230 TCTCTCTCTGCGGAGGGATT 59.740 55.000 25.44 0.00 46.71 3.01
4966 6327 1.495148 TCTCTCTCTGCGGAGGGATTA 59.505 52.381 25.44 13.93 46.71 1.75
4967 6328 1.885887 CTCTCTCTGCGGAGGGATTAG 59.114 57.143 25.44 13.21 46.71 1.73
4968 6329 0.316841 CTCTCTGCGGAGGGATTAGC 59.683 60.000 18.32 0.00 42.46 3.09
4969 6330 1.006805 CTCTGCGGAGGGATTAGCG 60.007 63.158 15.27 0.00 36.03 4.26
4970 6331 2.029666 CTGCGGAGGGATTAGCGG 59.970 66.667 0.00 0.00 0.00 5.52
4971 6332 4.235762 TGCGGAGGGATTAGCGGC 62.236 66.667 0.00 0.00 0.00 6.53
4972 6333 4.990553 GCGGAGGGATTAGCGGCC 62.991 72.222 0.00 0.00 0.00 6.13
4973 6334 4.664677 CGGAGGGATTAGCGGCCG 62.665 72.222 24.05 24.05 0.00 6.13
4974 6335 4.990553 GGAGGGATTAGCGGCCGC 62.991 72.222 42.34 42.34 42.33 6.53
4984 6345 3.825611 GCGGCCGCAATGGTCATT 61.826 61.111 43.55 0.00 45.31 2.57
4985 6346 2.477176 GCGGCCGCAATGGTCATTA 61.477 57.895 43.55 0.00 45.31 1.90
4986 6347 1.355210 CGGCCGCAATGGTCATTAC 59.645 57.895 14.67 0.00 45.31 1.89
4987 6348 1.095228 CGGCCGCAATGGTCATTACT 61.095 55.000 14.67 0.00 45.31 2.24
4991 6352 2.032178 GCCGCAATGGTCATTACTTCTC 59.968 50.000 0.00 0.00 41.21 2.87
5009 6370 5.128499 ACTTCTCTCTCTCTCTCTCTCTCTG 59.872 48.000 0.00 0.00 0.00 3.35
5010 6371 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
5030 7329 1.562783 GGAGGTCCTCTGCAAGTAGT 58.437 55.000 18.58 0.00 33.66 2.73
5081 7380 3.982058 GGAGTATGTAGTAATGCACGAGC 59.018 47.826 0.00 0.00 42.57 5.03
5082 7381 4.261656 GGAGTATGTAGTAATGCACGAGCT 60.262 45.833 6.36 0.00 42.74 4.09
5083 7382 4.611943 AGTATGTAGTAATGCACGAGCTG 58.388 43.478 6.36 0.00 42.74 4.24
5101 7400 2.612972 GCTGGTCGTTCCTTCAATCTGA 60.613 50.000 1.80 0.00 37.07 3.27
5107 7406 2.807967 CGTTCCTTCAATCTGAACAGCA 59.192 45.455 0.00 0.00 38.59 4.41
5134 7433 2.119495 AGGTGTGACTCCAACACTCTT 58.881 47.619 6.45 0.00 38.81 2.85
5135 7434 3.069586 CAGGTGTGACTCCAACACTCTTA 59.930 47.826 6.45 0.00 38.81 2.10
5136 7435 3.069729 AGGTGTGACTCCAACACTCTTAC 59.930 47.826 6.45 0.00 38.81 2.34
5137 7436 3.181469 GGTGTGACTCCAACACTCTTACA 60.181 47.826 6.65 0.00 38.81 2.41
5138 7437 4.503296 GGTGTGACTCCAACACTCTTACAT 60.503 45.833 6.65 0.00 38.81 2.29
5139 7438 5.057149 GTGTGACTCCAACACTCTTACATT 58.943 41.667 0.00 0.00 38.81 2.71
5140 7439 5.527582 GTGTGACTCCAACACTCTTACATTT 59.472 40.000 0.00 0.00 38.81 2.32
5141 7440 5.758296 TGTGACTCCAACACTCTTACATTTC 59.242 40.000 0.00 0.00 38.81 2.17
5142 7441 5.992217 GTGACTCCAACACTCTTACATTTCT 59.008 40.000 0.00 0.00 35.66 2.52
5143 7442 6.483640 GTGACTCCAACACTCTTACATTTCTT 59.516 38.462 0.00 0.00 35.66 2.52
5144 7443 6.706270 TGACTCCAACACTCTTACATTTCTTC 59.294 38.462 0.00 0.00 0.00 2.87
5214 7513 1.053424 TTACTGGAACCGGAAGCAGT 58.947 50.000 9.46 5.98 35.42 4.40
5253 7552 8.202811 TCATTGATAGATATTGATAGCTCCAGC 58.797 37.037 0.00 0.00 42.49 4.85
5274 7573 5.290158 CAGCCAATATCAATGAGTTTGCAAC 59.710 40.000 0.00 0.00 35.16 4.17
5283 7582 4.732285 ATGAGTTTGCAACGAGTTACAG 57.268 40.909 0.00 0.00 36.23 2.74
5291 7590 2.668457 GCAACGAGTTACAGACATGAGG 59.332 50.000 0.00 0.00 0.00 3.86
5327 7626 0.881118 TTGCGAGAAAACATGAGGCC 59.119 50.000 0.00 0.00 0.00 5.19
5329 7628 1.277842 TGCGAGAAAACATGAGGCCTA 59.722 47.619 4.42 0.00 0.00 3.93
5364 7663 5.403766 CGTGCTGTAGATTCCAATCTATGTC 59.596 44.000 11.37 5.47 46.42 3.06
5369 7668 8.144478 GCTGTAGATTCCAATCTATGTCTACAA 58.856 37.037 11.37 0.80 46.42 2.41
5378 7677 9.764363 TCCAATCTATGTCTACAACATTGTATC 57.236 33.333 4.98 3.38 46.73 2.24
5382 7681 9.684448 ATCTATGTCTACAACATTGTATCTTCG 57.316 33.333 4.98 0.00 46.73 3.79
5389 7688 5.543714 ACAACATTGTATCTTCGGTGTGTA 58.456 37.500 0.00 0.00 40.16 2.90
5390 7689 5.637810 ACAACATTGTATCTTCGGTGTGTAG 59.362 40.000 0.00 0.00 40.16 2.74
5391 7690 5.654603 ACATTGTATCTTCGGTGTGTAGA 57.345 39.130 0.00 0.00 0.00 2.59
5392 7691 6.222038 ACATTGTATCTTCGGTGTGTAGAT 57.778 37.500 0.00 0.00 38.20 1.98
5393 7692 7.342769 ACATTGTATCTTCGGTGTGTAGATA 57.657 36.000 0.00 0.00 36.30 1.98
5394 7693 7.778083 ACATTGTATCTTCGGTGTGTAGATAA 58.222 34.615 0.00 0.00 38.30 1.75
5395 7694 8.421784 ACATTGTATCTTCGGTGTGTAGATAAT 58.578 33.333 0.00 0.00 38.30 1.28
5399 7704 9.128404 TGTATCTTCGGTGTGTAGATAATAACT 57.872 33.333 0.00 0.00 38.30 2.24
5414 7719 8.494016 AGATAATAACTAACAAAGTCTGTGCC 57.506 34.615 0.00 0.00 38.67 5.01
5416 7721 2.614829 ACTAACAAAGTCTGTGCCGT 57.385 45.000 0.00 0.00 38.67 5.68
5439 7745 5.659440 TGAAACAGGCTTCTTTTCACTTT 57.341 34.783 10.27 0.00 34.96 2.66
5442 7748 5.859205 AACAGGCTTCTTTTCACTTTCAT 57.141 34.783 0.00 0.00 0.00 2.57
5443 7749 5.444663 ACAGGCTTCTTTTCACTTTCATC 57.555 39.130 0.00 0.00 0.00 2.92
5444 7750 4.889409 ACAGGCTTCTTTTCACTTTCATCA 59.111 37.500 0.00 0.00 0.00 3.07
5445 7751 5.009410 ACAGGCTTCTTTTCACTTTCATCAG 59.991 40.000 0.00 0.00 0.00 2.90
5447 7753 4.279420 GGCTTCTTTTCACTTTCATCAGGT 59.721 41.667 0.00 0.00 0.00 4.00
5448 7754 5.473504 GGCTTCTTTTCACTTTCATCAGGTA 59.526 40.000 0.00 0.00 0.00 3.08
5449 7755 6.348868 GGCTTCTTTTCACTTTCATCAGGTAG 60.349 42.308 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.935205 CCAGAACAAATCGACACCAGATAA 59.065 41.667 0.00 0.00 0.00 1.75
6 7 2.738846 CTCCAGAACAAATCGACACCAG 59.261 50.000 0.00 0.00 0.00 4.00
8 9 1.464997 GCTCCAGAACAAATCGACACC 59.535 52.381 0.00 0.00 0.00 4.16
14 1170 4.997395 TCAGTTACTGCTCCAGAACAAATC 59.003 41.667 7.61 0.00 35.18 2.17
44 1200 3.204306 TCTGCAGGAATAGGCAAGATG 57.796 47.619 15.13 0.00 39.93 2.90
45 1201 3.054139 TGTTCTGCAGGAATAGGCAAGAT 60.054 43.478 15.13 0.00 39.93 2.40
67 1223 3.195610 TGTTCTCACTTGTGTCACTCACT 59.804 43.478 4.27 0.00 46.27 3.41
583 1766 6.810911 TCCAAGAGCTATATTGACTGAAGAC 58.189 40.000 7.23 0.00 28.67 3.01
768 1988 5.104569 AGGATTGAGAAGAGAATTCACCTCC 60.105 44.000 8.44 1.04 0.00 4.30
861 2090 9.513906 TTCTTGATACATACACAAAGATTCCAA 57.486 29.630 0.00 0.00 0.00 3.53
885 2116 6.700520 GTGTATAGCCCTGTTGTACATACTTC 59.299 42.308 0.00 0.00 0.00 3.01
898 2129 5.700722 TGTATAACTCGTGTATAGCCCTG 57.299 43.478 0.00 0.00 0.00 4.45
994 2243 1.613836 AGAAACTGCAGCAGGAAAGG 58.386 50.000 26.38 1.06 35.51 3.11
1319 2577 1.271379 CCTTGTGGGTAGTGGACTTGG 60.271 57.143 0.00 0.00 0.00 3.61
1711 2975 2.228138 TTAAAGTTGTCGGACACGCT 57.772 45.000 10.97 9.29 40.69 5.07
2376 3649 4.494091 TCCCTCTTCTGGAATAAAGCAG 57.506 45.455 0.00 0.00 0.00 4.24
2387 3660 6.183347 ACTAAATCCATTGTTCCCTCTTCTG 58.817 40.000 0.00 0.00 0.00 3.02
2665 3948 1.202348 GCCTTTGCATAACCCACTGAC 59.798 52.381 0.00 0.00 37.47 3.51
3512 4802 7.345691 ACATAATGTTGTCAGGTTATCCATCA 58.654 34.615 0.00 0.00 35.89 3.07
3827 5129 0.248012 TAAGCGGACGAGAAATGGCA 59.752 50.000 0.00 0.00 0.00 4.92
4189 5491 0.249911 ACACTCCGGCACTCAGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
4513 5821 4.601019 CCGATTTACTTTGCACCATCATC 58.399 43.478 0.00 0.00 0.00 2.92
4590 5920 7.134815 CCGGATTCAATGTGAGAACATTTATC 58.865 38.462 0.00 7.72 38.16 1.75
4626 5964 3.326006 ACCTGCAGATATGTCGAATCCAT 59.674 43.478 17.39 0.00 0.00 3.41
4627 5965 2.700371 ACCTGCAGATATGTCGAATCCA 59.300 45.455 17.39 0.00 0.00 3.41
4628 5966 3.006323 AGACCTGCAGATATGTCGAATCC 59.994 47.826 17.39 0.00 33.04 3.01
4669 6020 0.458669 CATTGCCTCCTTCATGCCAC 59.541 55.000 0.00 0.00 0.00 5.01
4746 6107 1.339727 ACCACCTCAACCGAATAAGGC 60.340 52.381 0.00 0.00 31.79 4.35
4748 6109 5.009210 TCAAAAACCACCTCAACCGAATAAG 59.991 40.000 0.00 0.00 0.00 1.73
4749 6110 4.888239 TCAAAAACCACCTCAACCGAATAA 59.112 37.500 0.00 0.00 0.00 1.40
4750 6111 4.462133 TCAAAAACCACCTCAACCGAATA 58.538 39.130 0.00 0.00 0.00 1.75
4751 6112 3.292460 TCAAAAACCACCTCAACCGAAT 58.708 40.909 0.00 0.00 0.00 3.34
4752 6113 2.724454 TCAAAAACCACCTCAACCGAA 58.276 42.857 0.00 0.00 0.00 4.30
4753 6114 2.421751 TCAAAAACCACCTCAACCGA 57.578 45.000 0.00 0.00 0.00 4.69
4754 6115 2.223711 CCTTCAAAAACCACCTCAACCG 60.224 50.000 0.00 0.00 0.00 4.44
4755 6116 3.028130 TCCTTCAAAAACCACCTCAACC 58.972 45.455 0.00 0.00 0.00 3.77
4756 6117 3.951680 TCTCCTTCAAAAACCACCTCAAC 59.048 43.478 0.00 0.00 0.00 3.18
4757 6118 4.243793 TCTCCTTCAAAAACCACCTCAA 57.756 40.909 0.00 0.00 0.00 3.02
4758 6119 3.943671 TCTCCTTCAAAAACCACCTCA 57.056 42.857 0.00 0.00 0.00 3.86
4759 6120 4.827284 TCATTCTCCTTCAAAAACCACCTC 59.173 41.667 0.00 0.00 0.00 3.85
4760 6121 4.584743 GTCATTCTCCTTCAAAAACCACCT 59.415 41.667 0.00 0.00 0.00 4.00
4761 6122 4.340950 TGTCATTCTCCTTCAAAAACCACC 59.659 41.667 0.00 0.00 0.00 4.61
4762 6123 5.507985 CCTGTCATTCTCCTTCAAAAACCAC 60.508 44.000 0.00 0.00 0.00 4.16
4763 6124 4.584325 CCTGTCATTCTCCTTCAAAAACCA 59.416 41.667 0.00 0.00 0.00 3.67
4764 6125 4.021981 CCCTGTCATTCTCCTTCAAAAACC 60.022 45.833 0.00 0.00 0.00 3.27
4765 6126 4.584743 ACCCTGTCATTCTCCTTCAAAAAC 59.415 41.667 0.00 0.00 0.00 2.43
4766 6127 4.803452 ACCCTGTCATTCTCCTTCAAAAA 58.197 39.130 0.00 0.00 0.00 1.94
4767 6128 4.453480 ACCCTGTCATTCTCCTTCAAAA 57.547 40.909 0.00 0.00 0.00 2.44
4768 6129 4.453480 AACCCTGTCATTCTCCTTCAAA 57.547 40.909 0.00 0.00 0.00 2.69
4769 6130 4.141274 TCAAACCCTGTCATTCTCCTTCAA 60.141 41.667 0.00 0.00 0.00 2.69
4770 6131 3.394274 TCAAACCCTGTCATTCTCCTTCA 59.606 43.478 0.00 0.00 0.00 3.02
4771 6132 4.006319 CTCAAACCCTGTCATTCTCCTTC 58.994 47.826 0.00 0.00 0.00 3.46
4772 6133 3.245052 CCTCAAACCCTGTCATTCTCCTT 60.245 47.826 0.00 0.00 0.00 3.36
4773 6134 2.307098 CCTCAAACCCTGTCATTCTCCT 59.693 50.000 0.00 0.00 0.00 3.69
4774 6135 2.619074 CCCTCAAACCCTGTCATTCTCC 60.619 54.545 0.00 0.00 0.00 3.71
4775 6136 2.619074 CCCCTCAAACCCTGTCATTCTC 60.619 54.545 0.00 0.00 0.00 2.87
4776 6137 1.355720 CCCCTCAAACCCTGTCATTCT 59.644 52.381 0.00 0.00 0.00 2.40
4777 6138 1.616994 CCCCCTCAAACCCTGTCATTC 60.617 57.143 0.00 0.00 0.00 2.67
4778 6139 0.409484 CCCCCTCAAACCCTGTCATT 59.591 55.000 0.00 0.00 0.00 2.57
4779 6140 0.477597 TCCCCCTCAAACCCTGTCAT 60.478 55.000 0.00 0.00 0.00 3.06
4780 6141 0.477597 ATCCCCCTCAAACCCTGTCA 60.478 55.000 0.00 0.00 0.00 3.58
4781 6142 0.704664 AATCCCCCTCAAACCCTGTC 59.295 55.000 0.00 0.00 0.00 3.51
4782 6143 1.923148 CTAATCCCCCTCAAACCCTGT 59.077 52.381 0.00 0.00 0.00 4.00
4783 6144 2.205342 TCTAATCCCCCTCAAACCCTG 58.795 52.381 0.00 0.00 0.00 4.45
4784 6145 2.581246 GTTCTAATCCCCCTCAAACCCT 59.419 50.000 0.00 0.00 0.00 4.34
4785 6146 2.357881 GGTTCTAATCCCCCTCAAACCC 60.358 54.545 0.00 0.00 30.76 4.11
4786 6147 2.357881 GGGTTCTAATCCCCCTCAAACC 60.358 54.545 0.00 0.00 39.08 3.27
4787 6148 3.014304 GGGTTCTAATCCCCCTCAAAC 57.986 52.381 0.00 0.00 39.08 2.93
4796 6157 5.431179 TTGACTTGTAGGGGTTCTAATCC 57.569 43.478 0.00 0.00 0.00 3.01
4797 6158 7.939784 ATTTTGACTTGTAGGGGTTCTAATC 57.060 36.000 0.00 0.00 0.00 1.75
4798 6159 8.170730 AGAATTTTGACTTGTAGGGGTTCTAAT 58.829 33.333 0.00 0.00 0.00 1.73
4799 6160 7.523415 AGAATTTTGACTTGTAGGGGTTCTAA 58.477 34.615 0.00 0.00 0.00 2.10
4800 6161 7.017254 AGAGAATTTTGACTTGTAGGGGTTCTA 59.983 37.037 0.00 0.00 0.00 2.10
4801 6162 5.953571 AGAATTTTGACTTGTAGGGGTTCT 58.046 37.500 0.00 0.00 0.00 3.01
4802 6163 6.004574 AGAGAATTTTGACTTGTAGGGGTTC 58.995 40.000 0.00 0.00 0.00 3.62
4803 6164 5.953571 AGAGAATTTTGACTTGTAGGGGTT 58.046 37.500 0.00 0.00 0.00 4.11
4804 6165 5.515008 GGAGAGAATTTTGACTTGTAGGGGT 60.515 44.000 0.00 0.00 0.00 4.95
4805 6166 4.944317 GGAGAGAATTTTGACTTGTAGGGG 59.056 45.833 0.00 0.00 0.00 4.79
4806 6167 5.560724 TGGAGAGAATTTTGACTTGTAGGG 58.439 41.667 0.00 0.00 0.00 3.53
4807 6168 7.148171 GGATTGGAGAGAATTTTGACTTGTAGG 60.148 40.741 0.00 0.00 0.00 3.18
4808 6169 7.391554 TGGATTGGAGAGAATTTTGACTTGTAG 59.608 37.037 0.00 0.00 0.00 2.74
4809 6170 7.174946 GTGGATTGGAGAGAATTTTGACTTGTA 59.825 37.037 0.00 0.00 0.00 2.41
4810 6171 6.015940 GTGGATTGGAGAGAATTTTGACTTGT 60.016 38.462 0.00 0.00 0.00 3.16
4811 6172 6.208204 AGTGGATTGGAGAGAATTTTGACTTG 59.792 38.462 0.00 0.00 0.00 3.16
4812 6173 6.310149 AGTGGATTGGAGAGAATTTTGACTT 58.690 36.000 0.00 0.00 0.00 3.01
4813 6174 5.885465 AGTGGATTGGAGAGAATTTTGACT 58.115 37.500 0.00 0.00 0.00 3.41
4814 6175 5.124617 GGAGTGGATTGGAGAGAATTTTGAC 59.875 44.000 0.00 0.00 0.00 3.18
4815 6176 5.222109 TGGAGTGGATTGGAGAGAATTTTGA 60.222 40.000 0.00 0.00 0.00 2.69
4816 6177 5.012239 TGGAGTGGATTGGAGAGAATTTTG 58.988 41.667 0.00 0.00 0.00 2.44
4817 6178 5.261040 TGGAGTGGATTGGAGAGAATTTT 57.739 39.130 0.00 0.00 0.00 1.82
4818 6179 4.934797 TGGAGTGGATTGGAGAGAATTT 57.065 40.909 0.00 0.00 0.00 1.82
4819 6180 4.934797 TTGGAGTGGATTGGAGAGAATT 57.065 40.909 0.00 0.00 0.00 2.17
4820 6181 4.725810 AGATTGGAGTGGATTGGAGAGAAT 59.274 41.667 0.00 0.00 0.00 2.40
4821 6182 4.107072 AGATTGGAGTGGATTGGAGAGAA 58.893 43.478 0.00 0.00 0.00 2.87
4822 6183 3.708631 GAGATTGGAGTGGATTGGAGAGA 59.291 47.826 0.00 0.00 0.00 3.10
4823 6184 3.181456 GGAGATTGGAGTGGATTGGAGAG 60.181 52.174 0.00 0.00 0.00 3.20
4824 6185 2.774234 GGAGATTGGAGTGGATTGGAGA 59.226 50.000 0.00 0.00 0.00 3.71
4825 6186 2.776536 AGGAGATTGGAGTGGATTGGAG 59.223 50.000 0.00 0.00 0.00 3.86
4826 6187 2.850833 AGGAGATTGGAGTGGATTGGA 58.149 47.619 0.00 0.00 0.00 3.53
4827 6188 3.054139 TCAAGGAGATTGGAGTGGATTGG 60.054 47.826 0.00 0.00 39.54 3.16
4828 6189 4.080695 TCTCAAGGAGATTGGAGTGGATTG 60.081 45.833 0.00 0.00 39.54 2.67
4829 6190 4.107072 TCTCAAGGAGATTGGAGTGGATT 58.893 43.478 0.00 0.00 39.54 3.01
4830 6191 3.710677 CTCTCAAGGAGATTGGAGTGGAT 59.289 47.826 0.00 0.00 44.45 3.41
4831 6192 3.102972 CTCTCAAGGAGATTGGAGTGGA 58.897 50.000 0.00 0.00 44.45 4.02
4832 6193 2.170187 CCTCTCAAGGAGATTGGAGTGG 59.830 54.545 0.00 0.00 46.67 4.00
4833 6194 3.540314 CCTCTCAAGGAGATTGGAGTG 57.460 52.381 0.00 0.00 46.67 3.51
4844 6205 4.737855 TCGTTTAATCCTCCTCTCAAGG 57.262 45.455 0.00 0.00 44.89 3.61
4845 6206 5.479306 TGTTCGTTTAATCCTCCTCTCAAG 58.521 41.667 0.00 0.00 0.00 3.02
4846 6207 5.477607 TGTTCGTTTAATCCTCCTCTCAA 57.522 39.130 0.00 0.00 0.00 3.02
4847 6208 5.477607 TTGTTCGTTTAATCCTCCTCTCA 57.522 39.130 0.00 0.00 0.00 3.27
4848 6209 4.870991 CCTTGTTCGTTTAATCCTCCTCTC 59.129 45.833 0.00 0.00 0.00 3.20
4849 6210 4.833390 CCTTGTTCGTTTAATCCTCCTCT 58.167 43.478 0.00 0.00 0.00 3.69
4850 6211 3.374367 GCCTTGTTCGTTTAATCCTCCTC 59.626 47.826 0.00 0.00 0.00 3.71
4851 6212 3.344515 GCCTTGTTCGTTTAATCCTCCT 58.655 45.455 0.00 0.00 0.00 3.69
4852 6213 2.422479 GGCCTTGTTCGTTTAATCCTCC 59.578 50.000 0.00 0.00 0.00 4.30
4853 6214 3.344515 AGGCCTTGTTCGTTTAATCCTC 58.655 45.455 0.00 0.00 0.00 3.71
4854 6215 3.434940 AGGCCTTGTTCGTTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
4855 6216 5.632244 TTAAGGCCTTGTTCGTTTAATCC 57.368 39.130 28.77 0.00 0.00 3.01
4856 6217 7.364970 TCTTTTAAGGCCTTGTTCGTTTAATC 58.635 34.615 28.77 0.00 0.00 1.75
4857 6218 7.279750 TCTTTTAAGGCCTTGTTCGTTTAAT 57.720 32.000 28.77 0.00 0.00 1.40
4858 6219 6.238814 CCTCTTTTAAGGCCTTGTTCGTTTAA 60.239 38.462 28.77 8.67 0.00 1.52
4859 6220 5.239963 CCTCTTTTAAGGCCTTGTTCGTTTA 59.760 40.000 28.77 1.62 0.00 2.01
4860 6221 4.037565 CCTCTTTTAAGGCCTTGTTCGTTT 59.962 41.667 28.77 0.57 0.00 3.60
4861 6222 3.568430 CCTCTTTTAAGGCCTTGTTCGTT 59.432 43.478 28.77 1.45 0.00 3.85
4862 6223 3.146847 CCTCTTTTAAGGCCTTGTTCGT 58.853 45.455 28.77 2.32 0.00 3.85
4863 6224 3.408634 TCCTCTTTTAAGGCCTTGTTCG 58.591 45.455 28.77 13.54 36.29 3.95
4864 6225 4.218635 CCTTCCTCTTTTAAGGCCTTGTTC 59.781 45.833 28.77 0.00 36.14 3.18
4865 6226 4.141018 TCCTTCCTCTTTTAAGGCCTTGTT 60.141 41.667 28.77 4.09 41.76 2.83
4866 6227 3.397955 TCCTTCCTCTTTTAAGGCCTTGT 59.602 43.478 28.77 4.97 41.76 3.16
4867 6228 4.013050 CTCCTTCCTCTTTTAAGGCCTTG 58.987 47.826 28.77 11.38 41.76 3.61
4868 6229 3.562393 GCTCCTTCCTCTTTTAAGGCCTT 60.562 47.826 24.18 24.18 41.76 4.35
4869 6230 2.025793 GCTCCTTCCTCTTTTAAGGCCT 60.026 50.000 0.00 0.00 41.76 5.19
4870 6231 2.290960 TGCTCCTTCCTCTTTTAAGGCC 60.291 50.000 0.00 0.00 41.76 5.19
4871 6232 3.013219 CTGCTCCTTCCTCTTTTAAGGC 58.987 50.000 0.00 0.00 41.76 4.35
4872 6233 4.512484 CTCTGCTCCTTCCTCTTTTAAGG 58.488 47.826 0.00 0.00 43.11 2.69
4873 6234 4.223923 TCCTCTGCTCCTTCCTCTTTTAAG 59.776 45.833 0.00 0.00 0.00 1.85
4874 6235 4.168101 TCCTCTGCTCCTTCCTCTTTTAA 58.832 43.478 0.00 0.00 0.00 1.52
4875 6236 3.791320 TCCTCTGCTCCTTCCTCTTTTA 58.209 45.455 0.00 0.00 0.00 1.52
4876 6237 2.625639 TCCTCTGCTCCTTCCTCTTTT 58.374 47.619 0.00 0.00 0.00 2.27
4877 6238 2.334006 TCCTCTGCTCCTTCCTCTTT 57.666 50.000 0.00 0.00 0.00 2.52
4878 6239 2.117865 CATCCTCTGCTCCTTCCTCTT 58.882 52.381 0.00 0.00 0.00 2.85
4879 6240 1.792115 CATCCTCTGCTCCTTCCTCT 58.208 55.000 0.00 0.00 0.00 3.69
4890 6251 2.104859 CCACAGCGTGCATCCTCTG 61.105 63.158 0.00 0.00 31.34 3.35
4891 6252 2.267006 CCACAGCGTGCATCCTCT 59.733 61.111 0.00 0.00 31.34 3.69
4892 6253 2.821366 CCCACAGCGTGCATCCTC 60.821 66.667 0.00 0.00 31.34 3.71
4905 6266 2.332654 GGTTGATGTGTCGGCCCAC 61.333 63.158 5.26 5.26 35.86 4.61
4906 6267 2.033448 GGTTGATGTGTCGGCCCA 59.967 61.111 0.00 0.00 0.00 5.36
4907 6268 2.033448 TGGTTGATGTGTCGGCCC 59.967 61.111 0.00 0.00 0.00 5.80
4908 6269 2.690778 GCTGGTTGATGTGTCGGCC 61.691 63.158 0.00 0.00 0.00 6.13
4909 6270 1.915614 CTGCTGGTTGATGTGTCGGC 61.916 60.000 0.00 0.00 0.00 5.54
4910 6271 1.915614 GCTGCTGGTTGATGTGTCGG 61.916 60.000 0.00 0.00 0.00 4.79
4911 6272 1.229975 TGCTGCTGGTTGATGTGTCG 61.230 55.000 0.00 0.00 0.00 4.35
4912 6273 0.520404 CTGCTGCTGGTTGATGTGTC 59.480 55.000 0.00 0.00 0.00 3.67
4913 6274 0.109153 TCTGCTGCTGGTTGATGTGT 59.891 50.000 6.69 0.00 0.00 3.72
4914 6275 0.803117 CTCTGCTGCTGGTTGATGTG 59.197 55.000 6.69 0.00 0.00 3.21
4915 6276 0.322277 CCTCTGCTGCTGGTTGATGT 60.322 55.000 6.69 0.00 0.00 3.06
4916 6277 1.030488 CCCTCTGCTGCTGGTTGATG 61.030 60.000 6.69 0.00 0.00 3.07
4917 6278 1.302285 CCCTCTGCTGCTGGTTGAT 59.698 57.895 6.69 0.00 0.00 2.57
4918 6279 2.116983 GACCCTCTGCTGCTGGTTGA 62.117 60.000 6.69 0.00 0.00 3.18
4919 6280 1.673665 GACCCTCTGCTGCTGGTTG 60.674 63.158 6.69 0.00 0.00 3.77
4920 6281 1.835927 GAGACCCTCTGCTGCTGGTT 61.836 60.000 6.69 0.00 0.00 3.67
4921 6282 2.203907 AGACCCTCTGCTGCTGGT 60.204 61.111 6.69 5.19 0.00 4.00
4922 6283 1.958902 GAGAGACCCTCTGCTGCTGG 61.959 65.000 6.69 3.61 41.35 4.85
4923 6284 1.516892 GAGAGACCCTCTGCTGCTG 59.483 63.158 0.00 0.00 41.35 4.41
4924 6285 4.032653 GAGAGACCCTCTGCTGCT 57.967 61.111 0.00 0.00 41.35 4.24
4931 6292 3.041946 AGAGAGAGAGAGAGAGACCCTC 58.958 54.545 0.00 0.00 42.28 4.30
4932 6293 3.041946 GAGAGAGAGAGAGAGAGACCCT 58.958 54.545 0.00 0.00 0.00 4.34
4933 6294 3.041946 AGAGAGAGAGAGAGAGAGACCC 58.958 54.545 0.00 0.00 0.00 4.46
4934 6295 3.742640 GCAGAGAGAGAGAGAGAGAGACC 60.743 56.522 0.00 0.00 0.00 3.85
4935 6296 3.462021 GCAGAGAGAGAGAGAGAGAGAC 58.538 54.545 0.00 0.00 0.00 3.36
4936 6297 2.101415 CGCAGAGAGAGAGAGAGAGAGA 59.899 54.545 0.00 0.00 0.00 3.10
4937 6298 2.477825 CGCAGAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
4938 6299 1.138859 CCGCAGAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 0.00 3.10
4939 6300 1.138859 TCCGCAGAGAGAGAGAGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
4940 6301 1.138859 CTCCGCAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 43.39 3.10
4941 6302 1.586422 CTCCGCAGAGAGAGAGAGAG 58.414 60.000 0.00 0.00 43.39 3.20
4942 6303 0.180171 CCTCCGCAGAGAGAGAGAGA 59.820 60.000 0.00 0.00 43.39 3.10
4943 6304 0.819259 CCCTCCGCAGAGAGAGAGAG 60.819 65.000 0.00 0.00 43.39 3.20
4944 6305 1.225983 CCCTCCGCAGAGAGAGAGA 59.774 63.158 0.00 0.00 43.39 3.10
4945 6306 0.178992 ATCCCTCCGCAGAGAGAGAG 60.179 60.000 0.00 0.00 43.39 3.20
4946 6307 0.260230 AATCCCTCCGCAGAGAGAGA 59.740 55.000 0.00 0.00 43.39 3.10
4947 6308 1.885887 CTAATCCCTCCGCAGAGAGAG 59.114 57.143 0.00 0.00 43.39 3.20
4948 6309 1.988293 CTAATCCCTCCGCAGAGAGA 58.012 55.000 0.00 0.00 43.39 3.10
4949 6310 0.316841 GCTAATCCCTCCGCAGAGAG 59.683 60.000 0.00 0.00 43.39 3.20
4950 6311 1.456196 CGCTAATCCCTCCGCAGAGA 61.456 60.000 0.00 0.00 43.39 3.10
4951 6312 1.006805 CGCTAATCCCTCCGCAGAG 60.007 63.158 0.00 0.00 40.09 3.35
4952 6313 2.498941 CCGCTAATCCCTCCGCAGA 61.499 63.158 0.00 0.00 0.00 4.26
4953 6314 2.029666 CCGCTAATCCCTCCGCAG 59.970 66.667 0.00 0.00 0.00 5.18
4954 6315 4.235762 GCCGCTAATCCCTCCGCA 62.236 66.667 0.00 0.00 0.00 5.69
4955 6316 4.990553 GGCCGCTAATCCCTCCGC 62.991 72.222 0.00 0.00 0.00 5.54
4956 6317 4.664677 CGGCCGCTAATCCCTCCG 62.665 72.222 14.67 0.00 0.00 4.63
4957 6318 4.990553 GCGGCCGCTAATCCCTCC 62.991 72.222 41.71 9.84 38.26 4.30
4958 6319 3.750373 TTGCGGCCGCTAATCCCTC 62.750 63.158 45.79 18.70 42.51 4.30
4959 6320 3.120086 ATTGCGGCCGCTAATCCCT 62.120 57.895 45.79 24.11 42.51 4.20
4960 6321 2.594592 ATTGCGGCCGCTAATCCC 60.595 61.111 45.79 20.24 42.51 3.85
4961 6322 2.639286 CATTGCGGCCGCTAATCC 59.361 61.111 45.79 21.01 42.51 3.01
4962 6323 2.117941 GACCATTGCGGCCGCTAATC 62.118 60.000 45.79 32.00 42.51 1.75
4963 6324 2.124320 ACCATTGCGGCCGCTAAT 60.124 55.556 45.79 36.65 42.51 1.73
4964 6325 2.822255 GACCATTGCGGCCGCTAA 60.822 61.111 45.79 36.23 42.51 3.09
4965 6326 2.884997 AATGACCATTGCGGCCGCTA 62.885 55.000 45.79 40.56 42.51 4.26
4966 6327 2.884997 TAATGACCATTGCGGCCGCT 62.885 55.000 45.79 29.55 42.51 5.52
4967 6328 2.477176 TAATGACCATTGCGGCCGC 61.477 57.895 42.35 42.35 39.03 6.53
4968 6329 1.095228 AGTAATGACCATTGCGGCCG 61.095 55.000 24.05 24.05 38.25 6.13
4969 6330 1.065551 GAAGTAATGACCATTGCGGCC 59.934 52.381 5.56 0.00 38.25 6.13
4970 6331 2.017049 AGAAGTAATGACCATTGCGGC 58.983 47.619 5.56 0.00 38.25 6.53
4971 6332 3.535561 AGAGAAGTAATGACCATTGCGG 58.464 45.455 5.56 0.00 38.25 5.69
4972 6333 4.437239 AGAGAGAAGTAATGACCATTGCG 58.563 43.478 5.56 0.00 38.25 4.85
4973 6334 5.669477 AGAGAGAGAAGTAATGACCATTGC 58.331 41.667 5.56 4.32 34.26 3.56
4974 6335 7.068593 AGAGAGAGAGAGAAGTAATGACCATTG 59.931 40.741 5.56 0.00 32.50 2.82
4975 6336 7.125391 AGAGAGAGAGAGAAGTAATGACCATT 58.875 38.462 0.64 0.64 34.93 3.16
4976 6337 6.672593 AGAGAGAGAGAGAAGTAATGACCAT 58.327 40.000 0.00 0.00 0.00 3.55
4977 6338 6.069673 AGAGAGAGAGAGAGAAGTAATGACCA 60.070 42.308 0.00 0.00 0.00 4.02
4978 6339 6.357367 AGAGAGAGAGAGAGAAGTAATGACC 58.643 44.000 0.00 0.00 0.00 4.02
4979 6340 7.275920 AGAGAGAGAGAGAGAGAAGTAATGAC 58.724 42.308 0.00 0.00 0.00 3.06
4980 6341 7.345653 AGAGAGAGAGAGAGAGAGAAGTAATGA 59.654 40.741 0.00 0.00 0.00 2.57
4981 6342 7.504403 AGAGAGAGAGAGAGAGAGAAGTAATG 58.496 42.308 0.00 0.00 0.00 1.90
4982 6343 7.566879 AGAGAGAGAGAGAGAGAGAGAAGTAAT 59.433 40.741 0.00 0.00 0.00 1.89
4983 6344 6.897966 AGAGAGAGAGAGAGAGAGAGAAGTAA 59.102 42.308 0.00 0.00 0.00 2.24
4984 6345 6.322456 CAGAGAGAGAGAGAGAGAGAGAAGTA 59.678 46.154 0.00 0.00 0.00 2.24
4985 6346 5.128499 CAGAGAGAGAGAGAGAGAGAGAAGT 59.872 48.000 0.00 0.00 0.00 3.01
4986 6347 5.599732 CAGAGAGAGAGAGAGAGAGAGAAG 58.400 50.000 0.00 0.00 0.00 2.85
4987 6348 4.141846 GCAGAGAGAGAGAGAGAGAGAGAA 60.142 50.000 0.00 0.00 0.00 2.87
4991 6352 2.477825 CGCAGAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
5009 6370 1.605058 TACTTGCAGAGGACCTCCGC 61.605 60.000 20.98 20.98 42.08 5.54
5010 6371 0.457851 CTACTTGCAGAGGACCTCCG 59.542 60.000 18.32 9.29 42.08 4.63
5050 7349 9.984590 TGCATTACTACATACTCCCTATATGTA 57.015 33.333 5.11 5.11 42.11 2.29
5058 7357 4.547532 CTCGTGCATTACTACATACTCCC 58.452 47.826 0.00 0.00 0.00 4.30
5081 7380 3.319137 TCAGATTGAAGGAACGACCAG 57.681 47.619 0.00 0.00 42.04 4.00
5082 7381 3.181459 TGTTCAGATTGAAGGAACGACCA 60.181 43.478 0.00 0.00 42.86 4.02
5083 7382 3.399330 TGTTCAGATTGAAGGAACGACC 58.601 45.455 0.00 0.00 42.86 4.79
5101 7400 1.076777 ACACCTGCCTTGTGCTGTT 60.077 52.632 0.00 0.00 42.00 3.16
5107 7406 1.344953 TGGAGTCACACCTGCCTTGT 61.345 55.000 0.00 0.00 0.00 3.16
5134 7433 6.855836 ACATTCGTACGGTAGAAGAAATGTA 58.144 36.000 19.74 0.00 0.00 2.29
5135 7434 5.717119 ACATTCGTACGGTAGAAGAAATGT 58.283 37.500 16.52 16.85 0.00 2.71
5136 7435 7.149176 CGATACATTCGTACGGTAGAAGAAATG 60.149 40.741 16.52 16.23 43.01 2.32
5137 7436 6.854892 CGATACATTCGTACGGTAGAAGAAAT 59.145 38.462 16.52 1.99 43.01 2.17
5138 7437 6.194463 CGATACATTCGTACGGTAGAAGAAA 58.806 40.000 16.52 0.00 43.01 2.52
5139 7438 5.741425 CGATACATTCGTACGGTAGAAGAA 58.259 41.667 16.52 0.07 43.01 2.52
5140 7439 5.334435 CGATACATTCGTACGGTAGAAGA 57.666 43.478 16.52 0.00 43.01 2.87
5174 7473 2.106938 CTATCAAGCCGAGCCGCA 59.893 61.111 0.00 0.00 0.00 5.69
5253 7552 5.639757 TCGTTGCAAACTCATTGATATTGG 58.360 37.500 0.00 0.00 46.99 3.16
5274 7573 2.949451 AGCCTCATGTCTGTAACTCG 57.051 50.000 0.00 0.00 0.00 4.18
5327 7626 5.168569 TCTACAGCACGGACTTGAAAATAG 58.831 41.667 0.00 0.00 0.00 1.73
5329 7628 4.002906 TCTACAGCACGGACTTGAAAAT 57.997 40.909 0.00 0.00 0.00 1.82
5364 7663 5.637810 ACACACCGAAGATACAATGTTGTAG 59.362 40.000 10.90 0.36 45.80 2.74
5369 7668 5.654603 TCTACACACCGAAGATACAATGT 57.345 39.130 0.00 0.00 0.00 2.71
5377 7676 8.959548 TGTTAGTTATTATCTACACACCGAAGA 58.040 33.333 0.00 0.00 0.00 2.87
5378 7677 9.577110 TTGTTAGTTATTATCTACACACCGAAG 57.423 33.333 0.00 0.00 0.00 3.79
5389 7688 7.277981 CGGCACAGACTTTGTTAGTTATTATCT 59.722 37.037 0.00 0.00 38.16 1.98
5390 7689 7.064253 ACGGCACAGACTTTGTTAGTTATTATC 59.936 37.037 0.00 0.00 38.16 1.75
5391 7690 6.877322 ACGGCACAGACTTTGTTAGTTATTAT 59.123 34.615 0.00 0.00 38.16 1.28
5392 7691 6.225318 ACGGCACAGACTTTGTTAGTTATTA 58.775 36.000 0.00 0.00 38.16 0.98
5393 7692 5.061179 ACGGCACAGACTTTGTTAGTTATT 58.939 37.500 0.00 0.00 38.16 1.40
5394 7693 4.638304 ACGGCACAGACTTTGTTAGTTAT 58.362 39.130 0.00 0.00 38.16 1.89
5395 7694 4.062677 ACGGCACAGACTTTGTTAGTTA 57.937 40.909 0.00 0.00 38.16 2.24
5399 7704 2.907634 TCAACGGCACAGACTTTGTTA 58.092 42.857 0.00 0.00 38.16 2.41
5414 7719 3.791353 GTGAAAAGAAGCCTGTTTCAACG 59.209 43.478 0.00 0.00 41.53 4.10
5416 7721 5.659440 AAGTGAAAAGAAGCCTGTTTCAA 57.341 34.783 0.00 0.00 41.53 2.69
5439 7745 9.613428 CCTTTGTTATGTTTATCTACCTGATGA 57.387 33.333 0.00 0.00 36.65 2.92
5442 7748 6.826741 GGCCTTTGTTATGTTTATCTACCTGA 59.173 38.462 0.00 0.00 0.00 3.86
5443 7749 6.601613 TGGCCTTTGTTATGTTTATCTACCTG 59.398 38.462 3.32 0.00 0.00 4.00
5444 7750 6.727394 TGGCCTTTGTTATGTTTATCTACCT 58.273 36.000 3.32 0.00 0.00 3.08
5445 7751 7.399245 TTGGCCTTTGTTATGTTTATCTACC 57.601 36.000 3.32 0.00 0.00 3.18
5447 7753 7.406916 TCCTTGGCCTTTGTTATGTTTATCTA 58.593 34.615 3.32 0.00 0.00 1.98
5448 7754 6.252995 TCCTTGGCCTTTGTTATGTTTATCT 58.747 36.000 3.32 0.00 0.00 1.98
5449 7755 6.524101 TCCTTGGCCTTTGTTATGTTTATC 57.476 37.500 3.32 0.00 0.00 1.75
5458 7764 2.371841 GGGAAAATCCTTGGCCTTTGTT 59.628 45.455 3.32 0.00 36.57 2.83
5463 7769 0.336392 GGAGGGAAAATCCTTGGCCT 59.664 55.000 3.32 0.00 37.25 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.