Multiple sequence alignment - TraesCS7D01G018600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G018600 chr7D 100.000 2473 0 0 1 2473 8249804 8252276 0.000000e+00 4567
1 TraesCS7D01G018600 chr7D 88.000 850 59 19 648 1473 8376013 8376843 0.000000e+00 965
2 TraesCS7D01G018600 chr7D 83.880 732 77 21 765 1473 8436055 8436768 0.000000e+00 660
3 TraesCS7D01G018600 chr7D 82.969 229 23 6 1404 1627 8083517 8083300 2.510000e-45 193
4 TraesCS7D01G018600 chr7A 90.254 1221 66 20 5 1196 8688134 8689330 0.000000e+00 1546
5 TraesCS7D01G018600 chr7A 88.770 1024 49 14 1222 2221 8689390 8690371 0.000000e+00 1194
6 TraesCS7D01G018600 chr7A 87.897 851 62 19 648 1473 8884730 8885564 0.000000e+00 963
7 TraesCS7D01G018600 chr7A 87.161 849 68 21 648 1473 8823164 8823994 0.000000e+00 926
8 TraesCS7D01G018600 chr7A 92.481 133 10 0 2337 2469 706713595 706713463 9.030000e-45 191
9 TraesCS7D01G018600 chr7A 86.275 102 9 3 1715 1814 56217578 56217480 3.360000e-19 106
10 TraesCS7D01G018600 chr4A 87.331 1334 76 47 202 1507 731490892 731489624 0.000000e+00 1441
11 TraesCS7D01G018600 chr4A 84.647 977 86 23 517 1473 731388785 731387853 0.000000e+00 915
12 TraesCS7D01G018600 chr4A 86.369 851 76 21 648 1476 731385278 731384446 0.000000e+00 893
13 TraesCS7D01G018600 chr4A 82.371 329 36 16 1314 1627 731488361 731488040 1.460000e-67 267
14 TraesCS7D01G018600 chr4A 83.688 141 8 7 368 504 732299844 732299715 4.320000e-23 119
15 TraesCS7D01G018600 chr5B 82.009 906 105 42 588 1470 707173655 707174525 0.000000e+00 717
16 TraesCS7D01G018600 chr4D 94.030 134 8 0 2336 2469 413008282 413008415 1.160000e-48 204
17 TraesCS7D01G018600 chr2D 93.284 134 8 1 2336 2469 557146723 557146855 1.940000e-46 196
18 TraesCS7D01G018600 chr3A 90.909 143 12 1 2328 2469 340026473 340026615 9.030000e-45 191
19 TraesCS7D01G018600 chr3A 91.045 134 10 2 2337 2469 595759964 595760096 1.950000e-41 180
20 TraesCS7D01G018600 chr6B 90.370 135 13 0 2335 2469 672132888 672132754 7.030000e-41 178
21 TraesCS7D01G018600 chr7B 89.313 131 14 0 2339 2469 87206292 87206422 5.470000e-37 165
22 TraesCS7D01G018600 chr5A 87.023 131 7 5 2339 2469 496285606 496285726 3.320000e-29 139
23 TraesCS7D01G018600 chr5A 91.398 93 8 0 2377 2469 550650473 550650565 7.180000e-26 128
24 TraesCS7D01G018600 chr5D 85.821 134 9 2 2336 2469 314893067 314893190 1.540000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G018600 chr7D 8249804 8252276 2472 False 4567 4567 100.000 1 2473 1 chr7D.!!$F1 2472
1 TraesCS7D01G018600 chr7D 8376013 8376843 830 False 965 965 88.000 648 1473 1 chr7D.!!$F2 825
2 TraesCS7D01G018600 chr7D 8436055 8436768 713 False 660 660 83.880 765 1473 1 chr7D.!!$F3 708
3 TraesCS7D01G018600 chr7A 8688134 8690371 2237 False 1370 1546 89.512 5 2221 2 chr7A.!!$F3 2216
4 TraesCS7D01G018600 chr7A 8884730 8885564 834 False 963 963 87.897 648 1473 1 chr7A.!!$F2 825
5 TraesCS7D01G018600 chr7A 8823164 8823994 830 False 926 926 87.161 648 1473 1 chr7A.!!$F1 825
6 TraesCS7D01G018600 chr4A 731384446 731388785 4339 True 904 915 85.508 517 1476 2 chr4A.!!$R2 959
7 TraesCS7D01G018600 chr4A 731488040 731490892 2852 True 854 1441 84.851 202 1627 2 chr4A.!!$R3 1425
8 TraesCS7D01G018600 chr5B 707173655 707174525 870 False 717 717 82.009 588 1470 1 chr5B.!!$F1 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 484 0.037877 GGATCCAGGCATCCATCCAG 59.962 60.0 6.95 0.0 42.02 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 7267 0.109153 ACACATCAACCAGCAGCAGA 59.891 50.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.291611 GGCTGGATTTGCCCACTG 58.708 61.111 0.00 0.00 44.32 3.66
40 41 2.879907 CTGGATTTGCCCACTGCG 59.120 61.111 0.00 0.00 45.60 5.18
57 58 4.032217 CACTGCGACTGTAAATGCTCTTAG 59.968 45.833 0.00 0.00 0.00 2.18
59 60 4.174009 TGCGACTGTAAATGCTCTTAGTC 58.826 43.478 0.00 0.00 33.15 2.59
60 61 4.082190 TGCGACTGTAAATGCTCTTAGTCT 60.082 41.667 0.00 0.00 34.05 3.24
74 85 5.220491 GCTCTTAGTCTGTAAAAAGCATCCG 60.220 44.000 0.00 0.00 0.00 4.18
75 86 4.630069 TCTTAGTCTGTAAAAAGCATCCGC 59.370 41.667 0.00 0.00 38.99 5.54
76 87 2.084546 AGTCTGTAAAAAGCATCCGCC 58.915 47.619 0.00 0.00 39.83 6.13
129 150 1.889545 ACTCTTTGCTTGTCTGGCTC 58.110 50.000 0.00 0.00 0.00 4.70
132 153 2.224606 TCTTTGCTTGTCTGGCTCTTG 58.775 47.619 0.00 0.00 0.00 3.02
184 205 5.626347 GCCAGTACTAGTCTTTTTAGGTCCC 60.626 48.000 0.00 0.00 0.00 4.46
187 208 7.097834 CAGTACTAGTCTTTTTAGGTCCCAAG 58.902 42.308 0.00 0.00 0.00 3.61
198 221 1.133199 AGGTCCCAAGAAAATGCACCA 60.133 47.619 0.00 0.00 0.00 4.17
334 363 4.410400 CCCTCGCCCCCAGACAAC 62.410 72.222 0.00 0.00 0.00 3.32
400 429 2.993471 GCCATTGTCCCTTGCCGTG 61.993 63.158 0.00 0.00 0.00 4.94
417 449 5.744171 TGCCGTGCCATTTCTATATCATAT 58.256 37.500 0.00 0.00 0.00 1.78
450 482 2.157849 TGGATCCAGGCATCCATCC 58.842 57.895 11.44 6.80 46.34 3.51
451 483 0.698542 TGGATCCAGGCATCCATCCA 60.699 55.000 11.44 9.02 46.34 3.41
452 484 0.037877 GGATCCAGGCATCCATCCAG 59.962 60.000 6.95 0.00 42.02 3.86
453 485 0.608582 GATCCAGGCATCCATCCAGC 60.609 60.000 0.00 0.00 0.00 4.85
454 486 1.358051 ATCCAGGCATCCATCCAGCA 61.358 55.000 0.00 0.00 0.00 4.41
456 488 1.226542 CAGGCATCCATCCAGCACT 59.773 57.895 0.00 0.00 0.00 4.40
457 489 1.101635 CAGGCATCCATCCAGCACTG 61.102 60.000 0.00 0.00 0.00 3.66
458 490 2.487532 GGCATCCATCCAGCACTGC 61.488 63.158 0.00 0.00 0.00 4.40
459 491 2.487532 GCATCCATCCAGCACTGCC 61.488 63.158 0.00 0.00 0.00 4.85
460 492 1.077285 CATCCATCCAGCACTGCCA 60.077 57.895 0.00 0.00 0.00 4.92
461 493 0.681887 CATCCATCCAGCACTGCCAA 60.682 55.000 0.00 0.00 0.00 4.52
493 525 1.217511 GTGAGCAGAGCAGCTAGCA 59.782 57.895 18.83 0.98 46.75 3.49
505 537 4.554036 CTAGCAAGGGCCCGGCTC 62.554 72.222 37.26 19.91 42.56 4.70
536 568 3.636231 CACCCCAGACCTTGCCGA 61.636 66.667 0.00 0.00 0.00 5.54
606 641 4.790962 ATCCTGCTGGCCGTGCTG 62.791 66.667 19.16 17.87 0.00 4.41
1131 1178 0.392461 GCAGGATGGAGGCGTTTGTA 60.392 55.000 0.00 0.00 35.86 2.41
1186 1233 1.605058 CCTCGTCATCCAGGTCCGTT 61.605 60.000 0.00 0.00 0.00 4.44
1210 1306 3.380004 GTCTGTCTCGACTCCATTGATCT 59.620 47.826 0.00 0.00 0.00 2.75
1211 1307 4.019858 TCTGTCTCGACTCCATTGATCTT 58.980 43.478 0.00 0.00 0.00 2.40
1251 1349 2.956333 AGTGAATGCATCATCCATGGTG 59.044 45.455 12.58 9.69 40.97 4.17
1454 6412 4.435436 AAGATGCTCGCCGACGCA 62.435 61.111 12.31 12.31 40.87 5.24
1473 6431 0.249073 ATACATCGCCACGCTCTGAC 60.249 55.000 0.00 0.00 0.00 3.51
1477 6436 2.943680 ATCGCCACGCTCTGACGATG 62.944 60.000 2.39 2.68 41.53 3.84
1497 6456 2.120232 GATCCAGTACGCAATCAGTCG 58.880 52.381 0.00 0.00 0.00 4.18
1524 6483 1.225704 GCCTGCCTGCCTGATTAGT 59.774 57.895 0.00 0.00 0.00 2.24
1525 6484 0.469917 GCCTGCCTGCCTGATTAGTA 59.530 55.000 0.00 0.00 0.00 1.82
1526 6485 1.542108 GCCTGCCTGCCTGATTAGTAG 60.542 57.143 0.00 0.00 0.00 2.57
1528 6487 2.965831 CCTGCCTGCCTGATTAGTAGTA 59.034 50.000 0.00 0.00 0.00 1.82
1530 6489 3.639094 CTGCCTGCCTGATTAGTAGTACT 59.361 47.826 8.14 8.14 0.00 2.73
1532 6491 4.827835 TGCCTGCCTGATTAGTAGTACTAG 59.172 45.833 9.90 0.94 31.47 2.57
1533 6492 5.071370 GCCTGCCTGATTAGTAGTACTAGA 58.929 45.833 9.90 3.08 31.47 2.43
1534 6493 5.182380 GCCTGCCTGATTAGTAGTACTAGAG 59.818 48.000 9.90 7.78 31.47 2.43
1535 6494 6.300703 CCTGCCTGATTAGTAGTACTAGAGT 58.699 44.000 9.90 1.66 31.47 3.24
1536 6495 6.773685 CCTGCCTGATTAGTAGTACTAGAGTT 59.226 42.308 9.90 0.00 31.47 3.01
1537 6496 7.040961 CCTGCCTGATTAGTAGTACTAGAGTTC 60.041 44.444 9.90 7.22 31.47 3.01
1539 6498 7.282675 TGCCTGATTAGTAGTACTAGAGTTCAC 59.717 40.741 9.90 0.00 31.47 3.18
1540 6499 7.499895 GCCTGATTAGTAGTACTAGAGTTCACT 59.500 40.741 9.90 0.00 31.47 3.41
1652 6632 0.445436 CAACGAGCTCAGACCATTGC 59.555 55.000 15.40 0.00 0.00 3.56
1659 6639 0.738975 CTCAGACCATTGCTGCCATG 59.261 55.000 6.73 6.73 33.45 3.66
1669 6649 4.382254 CCATTGCTGCCATGAGTTGTTATT 60.382 41.667 14.63 0.00 0.00 1.40
1714 6694 2.750166 AGTCTCATCACCAGTACGACAG 59.250 50.000 0.00 0.00 0.00 3.51
1749 6729 0.336392 GGAGGGAAAATCCTTGGCCT 59.664 55.000 3.32 0.00 37.25 5.19
1754 6734 2.371841 GGGAAAATCCTTGGCCTTTGTT 59.628 45.455 3.32 0.00 36.57 2.83
1763 6743 6.524101 TCCTTGGCCTTTGTTATGTTTATC 57.476 37.500 3.32 0.00 0.00 1.75
1764 6744 6.252995 TCCTTGGCCTTTGTTATGTTTATCT 58.747 36.000 3.32 0.00 0.00 1.98
1765 6745 7.406916 TCCTTGGCCTTTGTTATGTTTATCTA 58.593 34.615 3.32 0.00 0.00 1.98
1767 6747 7.399245 TTGGCCTTTGTTATGTTTATCTACC 57.601 36.000 3.32 0.00 0.00 3.18
1768 6748 6.727394 TGGCCTTTGTTATGTTTATCTACCT 58.273 36.000 3.32 0.00 0.00 3.08
1769 6749 6.601613 TGGCCTTTGTTATGTTTATCTACCTG 59.398 38.462 3.32 0.00 0.00 4.00
1770 6750 6.826741 GGCCTTTGTTATGTTTATCTACCTGA 59.173 38.462 0.00 0.00 0.00 3.86
1773 6753 9.613428 CCTTTGTTATGTTTATCTACCTGATGA 57.387 33.333 0.00 0.00 36.65 2.92
1796 6777 5.659440 AAGTGAAAAGAAGCCTGTTTCAA 57.341 34.783 0.00 0.00 41.53 2.69
1798 6779 3.791353 GTGAAAAGAAGCCTGTTTCAACG 59.209 43.478 0.00 0.00 41.53 4.10
1813 6794 2.907634 TCAACGGCACAGACTTTGTTA 58.092 42.857 0.00 0.00 38.16 2.41
1816 6797 2.914059 ACGGCACAGACTTTGTTAGTT 58.086 42.857 0.00 0.00 38.16 2.24
1818 6799 4.638304 ACGGCACAGACTTTGTTAGTTAT 58.362 39.130 0.00 0.00 38.16 1.89
1820 6801 6.225318 ACGGCACAGACTTTGTTAGTTATTA 58.775 36.000 0.00 0.00 38.16 0.98
1821 6802 6.877322 ACGGCACAGACTTTGTTAGTTATTAT 59.123 34.615 0.00 0.00 38.16 1.28
1822 6803 7.064253 ACGGCACAGACTTTGTTAGTTATTATC 59.936 37.037 0.00 0.00 38.16 1.75
1834 6821 9.577110 TTGTTAGTTATTATCTACACACCGAAG 57.423 33.333 0.00 0.00 0.00 3.79
1835 6822 8.959548 TGTTAGTTATTATCTACACACCGAAGA 58.040 33.333 0.00 0.00 0.00 2.87
1843 6830 5.654603 TCTACACACCGAAGATACAATGT 57.345 39.130 0.00 0.00 0.00 2.71
1848 6835 5.637810 ACACACCGAAGATACAATGTTGTAG 59.362 40.000 10.90 0.36 45.80 2.74
1883 6870 4.002906 TCTACAGCACGGACTTGAAAAT 57.997 40.909 0.00 0.00 0.00 1.82
1885 6872 5.168569 TCTACAGCACGGACTTGAAAATAG 58.831 41.667 0.00 0.00 0.00 1.73
1938 6925 2.949451 AGCCTCATGTCTGTAACTCG 57.051 50.000 0.00 0.00 0.00 4.18
1959 6946 5.639757 TCGTTGCAAACTCATTGATATTGG 58.360 37.500 0.00 0.00 46.99 3.16
2038 7025 2.106938 CTATCAAGCCGAGCCGCA 59.893 61.111 0.00 0.00 0.00 5.69
2072 7059 5.334435 CGATACATTCGTACGGTAGAAGA 57.666 43.478 16.52 0.00 43.01 2.87
2073 7060 5.741425 CGATACATTCGTACGGTAGAAGAA 58.259 41.667 16.52 0.07 43.01 2.52
2074 7061 6.194463 CGATACATTCGTACGGTAGAAGAAA 58.806 40.000 16.52 0.00 43.01 2.52
2075 7062 6.854892 CGATACATTCGTACGGTAGAAGAAAT 59.145 38.462 16.52 1.99 43.01 2.17
2076 7063 7.149176 CGATACATTCGTACGGTAGAAGAAATG 60.149 40.741 16.52 16.23 43.01 2.32
2077 7064 5.717119 ACATTCGTACGGTAGAAGAAATGT 58.283 37.500 16.52 16.85 0.00 2.71
2078 7065 6.855836 ACATTCGTACGGTAGAAGAAATGTA 58.144 36.000 19.74 0.00 0.00 2.29
2105 7092 1.344953 TGGAGTCACACCTGCCTTGT 61.345 55.000 0.00 0.00 0.00 3.16
2111 7098 1.076777 ACACCTGCCTTGTGCTGTT 60.077 52.632 0.00 0.00 42.00 3.16
2130 7117 3.181459 TGTTCAGATTGAAGGAACGACCA 60.181 43.478 0.00 0.00 42.86 4.02
2131 7118 3.319137 TCAGATTGAAGGAACGACCAG 57.681 47.619 0.00 0.00 42.04 4.00
2132 7119 1.734465 CAGATTGAAGGAACGACCAGC 59.266 52.381 0.00 0.00 42.04 4.85
2154 7141 4.547532 CTCGTGCATTACTACATACTCCC 58.452 47.826 0.00 0.00 0.00 4.30
2162 7149 9.984590 TGCATTACTACATACTCCCTATATGTA 57.015 33.333 5.11 5.11 42.11 2.29
2202 7189 0.457851 CTACTTGCAGAGGACCTCCG 59.542 60.000 18.32 9.29 42.08 4.63
2205 7192 2.849120 CTTGCAGAGGACCTCCGCAG 62.849 65.000 27.14 18.95 43.43 5.18
2207 7194 3.074999 GCAGAGGACCTCCGCAGAG 62.075 68.421 22.51 6.16 42.08 3.35
2209 7196 1.077068 AGAGGACCTCCGCAGAGAG 60.077 63.158 18.32 0.00 43.39 3.20
2211 7198 1.077068 AGGACCTCCGCAGAGAGAG 60.077 63.158 0.00 0.00 43.39 3.20
2213 7200 1.101049 GGACCTCCGCAGAGAGAGAG 61.101 65.000 0.00 0.00 43.39 3.20
2221 7208 2.477825 CGCAGAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
2222 7209 2.101415 CGCAGAGAGAGAGAGAGAGAGA 59.899 54.545 0.00 0.00 0.00 3.10
2223 7210 3.726607 GCAGAGAGAGAGAGAGAGAGAG 58.273 54.545 0.00 0.00 0.00 3.20
2224 7211 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
2225 7212 4.141846 GCAGAGAGAGAGAGAGAGAGAGAA 60.142 50.000 0.00 0.00 0.00 2.87
2226 7213 5.599732 CAGAGAGAGAGAGAGAGAGAGAAG 58.400 50.000 0.00 0.00 0.00 2.85
2227 7214 5.128499 CAGAGAGAGAGAGAGAGAGAGAAGT 59.872 48.000 0.00 0.00 0.00 3.01
2228 7215 6.322456 CAGAGAGAGAGAGAGAGAGAGAAGTA 59.678 46.154 0.00 0.00 0.00 2.24
2229 7216 6.897966 AGAGAGAGAGAGAGAGAGAGAAGTAA 59.102 42.308 0.00 0.00 0.00 2.24
2230 7217 7.566879 AGAGAGAGAGAGAGAGAGAGAAGTAAT 59.433 40.741 0.00 0.00 0.00 1.89
2231 7218 7.504403 AGAGAGAGAGAGAGAGAGAAGTAATG 58.496 42.308 0.00 0.00 0.00 1.90
2232 7219 7.345653 AGAGAGAGAGAGAGAGAGAAGTAATGA 59.654 40.741 0.00 0.00 0.00 2.57
2233 7220 7.275920 AGAGAGAGAGAGAGAGAAGTAATGAC 58.724 42.308 0.00 0.00 0.00 3.06
2234 7221 6.357367 AGAGAGAGAGAGAGAAGTAATGACC 58.643 44.000 0.00 0.00 0.00 4.02
2235 7222 6.069673 AGAGAGAGAGAGAGAAGTAATGACCA 60.070 42.308 0.00 0.00 0.00 4.02
2236 7223 6.672593 AGAGAGAGAGAGAAGTAATGACCAT 58.327 40.000 0.00 0.00 0.00 3.55
2237 7224 7.125391 AGAGAGAGAGAGAAGTAATGACCATT 58.875 38.462 0.64 0.64 34.93 3.16
2238 7225 7.068593 AGAGAGAGAGAGAAGTAATGACCATTG 59.931 40.741 5.56 0.00 32.50 2.82
2239 7226 5.669477 AGAGAGAGAAGTAATGACCATTGC 58.331 41.667 5.56 4.32 34.26 3.56
2240 7227 4.437239 AGAGAGAAGTAATGACCATTGCG 58.563 43.478 5.56 0.00 38.25 4.85
2241 7228 3.535561 AGAGAAGTAATGACCATTGCGG 58.464 45.455 5.56 0.00 38.25 5.69
2242 7229 2.017049 AGAAGTAATGACCATTGCGGC 58.983 47.619 5.56 0.00 38.25 6.53
2243 7230 1.065551 GAAGTAATGACCATTGCGGCC 59.934 52.381 5.56 0.00 38.25 6.13
2244 7231 1.095228 AGTAATGACCATTGCGGCCG 61.095 55.000 24.05 24.05 38.25 6.13
2245 7232 2.477176 TAATGACCATTGCGGCCGC 61.477 57.895 42.35 42.35 39.03 6.53
2246 7233 2.884997 TAATGACCATTGCGGCCGCT 62.885 55.000 45.79 29.55 42.51 5.52
2247 7234 2.884997 AATGACCATTGCGGCCGCTA 62.885 55.000 45.79 40.56 42.51 4.26
2248 7235 2.822255 GACCATTGCGGCCGCTAA 60.822 61.111 45.79 36.23 42.51 3.09
2249 7236 2.124320 ACCATTGCGGCCGCTAAT 60.124 55.556 45.79 36.65 42.51 1.73
2250 7237 2.117941 GACCATTGCGGCCGCTAATC 62.118 60.000 45.79 32.00 42.51 1.75
2251 7238 2.639286 CATTGCGGCCGCTAATCC 59.361 61.111 45.79 21.01 42.51 3.01
2252 7239 2.594592 ATTGCGGCCGCTAATCCC 60.595 61.111 45.79 20.24 42.51 3.85
2253 7240 3.120086 ATTGCGGCCGCTAATCCCT 62.120 57.895 45.79 24.11 42.51 4.20
2254 7241 3.750373 TTGCGGCCGCTAATCCCTC 62.750 63.158 45.79 18.70 42.51 4.30
2255 7242 4.990553 GCGGCCGCTAATCCCTCC 62.991 72.222 41.71 9.84 38.26 4.30
2256 7243 4.664677 CGGCCGCTAATCCCTCCG 62.665 72.222 14.67 0.00 0.00 4.63
2257 7244 4.990553 GGCCGCTAATCCCTCCGC 62.991 72.222 0.00 0.00 0.00 5.54
2258 7245 4.235762 GCCGCTAATCCCTCCGCA 62.236 66.667 0.00 0.00 0.00 5.69
2259 7246 2.029666 CCGCTAATCCCTCCGCAG 59.970 66.667 0.00 0.00 0.00 5.18
2260 7247 2.498941 CCGCTAATCCCTCCGCAGA 61.499 63.158 0.00 0.00 0.00 4.26
2261 7248 1.006805 CGCTAATCCCTCCGCAGAG 60.007 63.158 0.00 0.00 40.09 3.35
2262 7249 1.456196 CGCTAATCCCTCCGCAGAGA 61.456 60.000 0.00 0.00 43.39 3.10
2263 7250 0.316841 GCTAATCCCTCCGCAGAGAG 59.683 60.000 0.00 0.00 43.39 3.20
2264 7251 1.988293 CTAATCCCTCCGCAGAGAGA 58.012 55.000 0.00 0.00 43.39 3.10
2265 7252 1.885887 CTAATCCCTCCGCAGAGAGAG 59.114 57.143 0.00 0.00 43.39 3.20
2266 7253 0.260230 AATCCCTCCGCAGAGAGAGA 59.740 55.000 0.00 0.00 43.39 3.10
2267 7254 0.178992 ATCCCTCCGCAGAGAGAGAG 60.179 60.000 0.00 0.00 43.39 3.20
2268 7255 1.225983 CCCTCCGCAGAGAGAGAGA 59.774 63.158 0.00 0.00 43.39 3.10
2269 7256 0.819259 CCCTCCGCAGAGAGAGAGAG 60.819 65.000 0.00 0.00 43.39 3.20
2270 7257 0.180171 CCTCCGCAGAGAGAGAGAGA 59.820 60.000 0.00 0.00 43.39 3.10
2271 7258 1.586422 CTCCGCAGAGAGAGAGAGAG 58.414 60.000 0.00 0.00 43.39 3.20
2272 7259 1.138859 CTCCGCAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 43.39 3.10
2273 7260 1.138859 TCCGCAGAGAGAGAGAGAGAG 59.861 57.143 0.00 0.00 0.00 3.20
2274 7261 1.138859 CCGCAGAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 0.00 3.10
2275 7262 2.477825 CGCAGAGAGAGAGAGAGAGAG 58.522 57.143 0.00 0.00 0.00 3.20
2276 7263 2.101415 CGCAGAGAGAGAGAGAGAGAGA 59.899 54.545 0.00 0.00 0.00 3.10
2277 7264 3.462021 GCAGAGAGAGAGAGAGAGAGAC 58.538 54.545 0.00 0.00 0.00 3.36
2278 7265 3.742640 GCAGAGAGAGAGAGAGAGAGACC 60.743 56.522 0.00 0.00 0.00 3.85
2279 7266 3.041946 AGAGAGAGAGAGAGAGAGACCC 58.958 54.545 0.00 0.00 0.00 4.46
2280 7267 3.041946 GAGAGAGAGAGAGAGAGACCCT 58.958 54.545 0.00 0.00 0.00 4.34
2281 7268 3.041946 AGAGAGAGAGAGAGAGACCCTC 58.958 54.545 0.00 0.00 42.28 4.30
2288 7275 4.032653 GAGAGACCCTCTGCTGCT 57.967 61.111 0.00 0.00 41.35 4.24
2289 7276 1.516892 GAGAGACCCTCTGCTGCTG 59.483 63.158 0.00 0.00 41.35 4.41
2290 7277 1.958902 GAGAGACCCTCTGCTGCTGG 61.959 65.000 6.69 3.61 41.35 4.85
2291 7278 2.203907 AGACCCTCTGCTGCTGGT 60.204 61.111 6.69 5.19 0.00 4.00
2292 7279 1.835927 GAGACCCTCTGCTGCTGGTT 61.836 60.000 6.69 0.00 0.00 3.67
2293 7280 1.673665 GACCCTCTGCTGCTGGTTG 60.674 63.158 6.69 0.00 0.00 3.77
2294 7281 2.116983 GACCCTCTGCTGCTGGTTGA 62.117 60.000 6.69 0.00 0.00 3.18
2295 7282 1.302285 CCCTCTGCTGCTGGTTGAT 59.698 57.895 6.69 0.00 0.00 2.57
2296 7283 1.030488 CCCTCTGCTGCTGGTTGATG 61.030 60.000 6.69 0.00 0.00 3.07
2297 7284 0.322277 CCTCTGCTGCTGGTTGATGT 60.322 55.000 6.69 0.00 0.00 3.06
2298 7285 0.803117 CTCTGCTGCTGGTTGATGTG 59.197 55.000 6.69 0.00 0.00 3.21
2299 7286 0.109153 TCTGCTGCTGGTTGATGTGT 59.891 50.000 6.69 0.00 0.00 3.72
2300 7287 0.520404 CTGCTGCTGGTTGATGTGTC 59.480 55.000 0.00 0.00 0.00 3.67
2301 7288 1.229975 TGCTGCTGGTTGATGTGTCG 61.230 55.000 0.00 0.00 0.00 4.35
2302 7289 1.915614 GCTGCTGGTTGATGTGTCGG 61.916 60.000 0.00 0.00 0.00 4.79
2303 7290 1.915614 CTGCTGGTTGATGTGTCGGC 61.916 60.000 0.00 0.00 0.00 5.54
2304 7291 2.690778 GCTGGTTGATGTGTCGGCC 61.691 63.158 0.00 0.00 0.00 6.13
2305 7292 2.033448 TGGTTGATGTGTCGGCCC 59.967 61.111 0.00 0.00 0.00 5.80
2306 7293 2.033448 GGTTGATGTGTCGGCCCA 59.967 61.111 0.00 0.00 0.00 5.36
2307 7294 2.332654 GGTTGATGTGTCGGCCCAC 61.333 63.158 5.26 5.26 35.86 4.61
2320 7307 2.821366 CCCACAGCGTGCATCCTC 60.821 66.667 0.00 0.00 31.34 3.71
2321 7308 2.267006 CCACAGCGTGCATCCTCT 59.733 61.111 0.00 0.00 31.34 3.69
2322 7309 2.104859 CCACAGCGTGCATCCTCTG 61.105 63.158 0.00 0.00 31.34 3.35
2333 7320 1.792115 CATCCTCTGCTCCTTCCTCT 58.208 55.000 0.00 0.00 0.00 3.69
2334 7321 2.117865 CATCCTCTGCTCCTTCCTCTT 58.882 52.381 0.00 0.00 0.00 2.85
2335 7322 2.334006 TCCTCTGCTCCTTCCTCTTT 57.666 50.000 0.00 0.00 0.00 2.52
2336 7323 2.625639 TCCTCTGCTCCTTCCTCTTTT 58.374 47.619 0.00 0.00 0.00 2.27
2337 7324 3.791320 TCCTCTGCTCCTTCCTCTTTTA 58.209 45.455 0.00 0.00 0.00 1.52
2338 7325 4.168101 TCCTCTGCTCCTTCCTCTTTTAA 58.832 43.478 0.00 0.00 0.00 1.52
2339 7326 4.223923 TCCTCTGCTCCTTCCTCTTTTAAG 59.776 45.833 0.00 0.00 0.00 1.85
2340 7327 4.512484 CTCTGCTCCTTCCTCTTTTAAGG 58.488 47.826 0.00 0.00 43.11 2.69
2341 7328 3.013219 CTGCTCCTTCCTCTTTTAAGGC 58.987 50.000 0.00 0.00 41.76 4.35
2342 7329 2.290960 TGCTCCTTCCTCTTTTAAGGCC 60.291 50.000 0.00 0.00 41.76 5.19
2343 7330 2.025793 GCTCCTTCCTCTTTTAAGGCCT 60.026 50.000 0.00 0.00 41.76 5.19
2344 7331 3.562393 GCTCCTTCCTCTTTTAAGGCCTT 60.562 47.826 24.18 24.18 41.76 4.35
2345 7332 4.013050 CTCCTTCCTCTTTTAAGGCCTTG 58.987 47.826 28.77 11.38 41.76 3.61
2346 7333 3.397955 TCCTTCCTCTTTTAAGGCCTTGT 59.602 43.478 28.77 4.97 41.76 3.16
2347 7334 4.141018 TCCTTCCTCTTTTAAGGCCTTGTT 60.141 41.667 28.77 4.09 41.76 2.83
2348 7335 4.218635 CCTTCCTCTTTTAAGGCCTTGTTC 59.781 45.833 28.77 0.00 36.14 3.18
2349 7336 3.408634 TCCTCTTTTAAGGCCTTGTTCG 58.591 45.455 28.77 13.54 36.29 3.95
2350 7337 3.146847 CCTCTTTTAAGGCCTTGTTCGT 58.853 45.455 28.77 2.32 0.00 3.85
2351 7338 3.568430 CCTCTTTTAAGGCCTTGTTCGTT 59.432 43.478 28.77 1.45 0.00 3.85
2352 7339 4.037565 CCTCTTTTAAGGCCTTGTTCGTTT 59.962 41.667 28.77 0.57 0.00 3.60
2353 7340 5.239963 CCTCTTTTAAGGCCTTGTTCGTTTA 59.760 40.000 28.77 1.62 0.00 2.01
2354 7341 6.238814 CCTCTTTTAAGGCCTTGTTCGTTTAA 60.239 38.462 28.77 8.67 0.00 1.52
2355 7342 7.279750 TCTTTTAAGGCCTTGTTCGTTTAAT 57.720 32.000 28.77 0.00 0.00 1.40
2356 7343 7.364970 TCTTTTAAGGCCTTGTTCGTTTAATC 58.635 34.615 28.77 0.00 0.00 1.75
2357 7344 5.632244 TTAAGGCCTTGTTCGTTTAATCC 57.368 39.130 28.77 0.00 0.00 3.01
2358 7345 3.434940 AGGCCTTGTTCGTTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
2359 7346 3.344515 AGGCCTTGTTCGTTTAATCCTC 58.655 45.455 0.00 0.00 0.00 3.71
2360 7347 2.422479 GGCCTTGTTCGTTTAATCCTCC 59.578 50.000 0.00 0.00 0.00 4.30
2361 7348 3.344515 GCCTTGTTCGTTTAATCCTCCT 58.655 45.455 0.00 0.00 0.00 3.69
2362 7349 3.374367 GCCTTGTTCGTTTAATCCTCCTC 59.626 47.826 0.00 0.00 0.00 3.71
2363 7350 4.833390 CCTTGTTCGTTTAATCCTCCTCT 58.167 43.478 0.00 0.00 0.00 3.69
2364 7351 4.870991 CCTTGTTCGTTTAATCCTCCTCTC 59.129 45.833 0.00 0.00 0.00 3.20
2365 7352 5.477607 TTGTTCGTTTAATCCTCCTCTCA 57.522 39.130 0.00 0.00 0.00 3.27
2366 7353 5.477607 TGTTCGTTTAATCCTCCTCTCAA 57.522 39.130 0.00 0.00 0.00 3.02
2367 7354 5.479306 TGTTCGTTTAATCCTCCTCTCAAG 58.521 41.667 0.00 0.00 0.00 3.02
2368 7355 4.737855 TCGTTTAATCCTCCTCTCAAGG 57.262 45.455 0.00 0.00 44.89 3.61
2379 7366 3.540314 CCTCTCAAGGAGATTGGAGTG 57.460 52.381 0.00 0.00 46.67 3.51
2380 7367 2.170187 CCTCTCAAGGAGATTGGAGTGG 59.830 54.545 0.00 0.00 46.67 4.00
2381 7368 3.102972 CTCTCAAGGAGATTGGAGTGGA 58.897 50.000 0.00 0.00 44.45 4.02
2382 7369 3.710677 CTCTCAAGGAGATTGGAGTGGAT 59.289 47.826 0.00 0.00 44.45 3.41
2383 7370 4.107072 TCTCAAGGAGATTGGAGTGGATT 58.893 43.478 0.00 0.00 39.54 3.01
2384 7371 4.080695 TCTCAAGGAGATTGGAGTGGATTG 60.081 45.833 0.00 0.00 39.54 2.67
2385 7372 3.054139 TCAAGGAGATTGGAGTGGATTGG 60.054 47.826 0.00 0.00 39.54 3.16
2386 7373 2.850833 AGGAGATTGGAGTGGATTGGA 58.149 47.619 0.00 0.00 0.00 3.53
2387 7374 2.776536 AGGAGATTGGAGTGGATTGGAG 59.223 50.000 0.00 0.00 0.00 3.86
2388 7375 2.774234 GGAGATTGGAGTGGATTGGAGA 59.226 50.000 0.00 0.00 0.00 3.71
2389 7376 3.181456 GGAGATTGGAGTGGATTGGAGAG 60.181 52.174 0.00 0.00 0.00 3.20
2390 7377 3.708631 GAGATTGGAGTGGATTGGAGAGA 59.291 47.826 0.00 0.00 0.00 3.10
2391 7378 4.107072 AGATTGGAGTGGATTGGAGAGAA 58.893 43.478 0.00 0.00 0.00 2.87
2392 7379 4.725810 AGATTGGAGTGGATTGGAGAGAAT 59.274 41.667 0.00 0.00 0.00 2.40
2393 7380 4.934797 TTGGAGTGGATTGGAGAGAATT 57.065 40.909 0.00 0.00 0.00 2.17
2394 7381 4.934797 TGGAGTGGATTGGAGAGAATTT 57.065 40.909 0.00 0.00 0.00 1.82
2395 7382 5.261040 TGGAGTGGATTGGAGAGAATTTT 57.739 39.130 0.00 0.00 0.00 1.82
2396 7383 5.012239 TGGAGTGGATTGGAGAGAATTTTG 58.988 41.667 0.00 0.00 0.00 2.44
2397 7384 5.222109 TGGAGTGGATTGGAGAGAATTTTGA 60.222 40.000 0.00 0.00 0.00 2.69
2398 7385 5.124617 GGAGTGGATTGGAGAGAATTTTGAC 59.875 44.000 0.00 0.00 0.00 3.18
2399 7386 5.885465 AGTGGATTGGAGAGAATTTTGACT 58.115 37.500 0.00 0.00 0.00 3.41
2400 7387 6.310149 AGTGGATTGGAGAGAATTTTGACTT 58.690 36.000 0.00 0.00 0.00 3.01
2401 7388 6.208204 AGTGGATTGGAGAGAATTTTGACTTG 59.792 38.462 0.00 0.00 0.00 3.16
2402 7389 6.015940 GTGGATTGGAGAGAATTTTGACTTGT 60.016 38.462 0.00 0.00 0.00 3.16
2403 7390 7.174946 GTGGATTGGAGAGAATTTTGACTTGTA 59.825 37.037 0.00 0.00 0.00 2.41
2404 7391 7.391554 TGGATTGGAGAGAATTTTGACTTGTAG 59.608 37.037 0.00 0.00 0.00 2.74
2405 7392 7.148171 GGATTGGAGAGAATTTTGACTTGTAGG 60.148 40.741 0.00 0.00 0.00 3.18
2406 7393 5.560724 TGGAGAGAATTTTGACTTGTAGGG 58.439 41.667 0.00 0.00 0.00 3.53
2407 7394 4.944317 GGAGAGAATTTTGACTTGTAGGGG 59.056 45.833 0.00 0.00 0.00 4.79
2408 7395 5.515008 GGAGAGAATTTTGACTTGTAGGGGT 60.515 44.000 0.00 0.00 0.00 4.95
2409 7396 5.953571 AGAGAATTTTGACTTGTAGGGGTT 58.046 37.500 0.00 0.00 0.00 4.11
2410 7397 6.004574 AGAGAATTTTGACTTGTAGGGGTTC 58.995 40.000 0.00 0.00 0.00 3.62
2411 7398 5.953571 AGAATTTTGACTTGTAGGGGTTCT 58.046 37.500 0.00 0.00 0.00 3.01
2412 7399 7.017254 AGAGAATTTTGACTTGTAGGGGTTCTA 59.983 37.037 0.00 0.00 0.00 2.10
2413 7400 7.523415 AGAATTTTGACTTGTAGGGGTTCTAA 58.477 34.615 0.00 0.00 0.00 2.10
2414 7401 8.170730 AGAATTTTGACTTGTAGGGGTTCTAAT 58.829 33.333 0.00 0.00 0.00 1.73
2415 7402 7.939784 ATTTTGACTTGTAGGGGTTCTAATC 57.060 36.000 0.00 0.00 0.00 1.75
2416 7403 5.431179 TTGACTTGTAGGGGTTCTAATCC 57.569 43.478 0.00 0.00 0.00 3.01
2425 7412 3.014304 GGGTTCTAATCCCCCTCAAAC 57.986 52.381 0.00 0.00 39.08 2.93
2426 7413 2.357881 GGGTTCTAATCCCCCTCAAACC 60.358 54.545 0.00 0.00 39.08 3.27
2427 7414 2.357881 GGTTCTAATCCCCCTCAAACCC 60.358 54.545 0.00 0.00 30.76 4.11
2428 7415 2.581246 GTTCTAATCCCCCTCAAACCCT 59.419 50.000 0.00 0.00 0.00 4.34
2429 7416 2.205342 TCTAATCCCCCTCAAACCCTG 58.795 52.381 0.00 0.00 0.00 4.45
2430 7417 1.923148 CTAATCCCCCTCAAACCCTGT 59.077 52.381 0.00 0.00 0.00 4.00
2431 7418 0.704664 AATCCCCCTCAAACCCTGTC 59.295 55.000 0.00 0.00 0.00 3.51
2432 7419 0.477597 ATCCCCCTCAAACCCTGTCA 60.478 55.000 0.00 0.00 0.00 3.58
2433 7420 0.477597 TCCCCCTCAAACCCTGTCAT 60.478 55.000 0.00 0.00 0.00 3.06
2434 7421 0.409484 CCCCCTCAAACCCTGTCATT 59.591 55.000 0.00 0.00 0.00 2.57
2435 7422 1.616994 CCCCCTCAAACCCTGTCATTC 60.617 57.143 0.00 0.00 0.00 2.67
2436 7423 1.355720 CCCCTCAAACCCTGTCATTCT 59.644 52.381 0.00 0.00 0.00 2.40
2437 7424 2.619074 CCCCTCAAACCCTGTCATTCTC 60.619 54.545 0.00 0.00 0.00 2.87
2438 7425 2.619074 CCCTCAAACCCTGTCATTCTCC 60.619 54.545 0.00 0.00 0.00 3.71
2439 7426 2.307098 CCTCAAACCCTGTCATTCTCCT 59.693 50.000 0.00 0.00 0.00 3.69
2440 7427 3.245052 CCTCAAACCCTGTCATTCTCCTT 60.245 47.826 0.00 0.00 0.00 3.36
2441 7428 4.006319 CTCAAACCCTGTCATTCTCCTTC 58.994 47.826 0.00 0.00 0.00 3.46
2442 7429 3.394274 TCAAACCCTGTCATTCTCCTTCA 59.606 43.478 0.00 0.00 0.00 3.02
2443 7430 4.141274 TCAAACCCTGTCATTCTCCTTCAA 60.141 41.667 0.00 0.00 0.00 2.69
2444 7431 4.453480 AACCCTGTCATTCTCCTTCAAA 57.547 40.909 0.00 0.00 0.00 2.69
2445 7432 4.453480 ACCCTGTCATTCTCCTTCAAAA 57.547 40.909 0.00 0.00 0.00 2.44
2446 7433 4.803452 ACCCTGTCATTCTCCTTCAAAAA 58.197 39.130 0.00 0.00 0.00 1.94
2447 7434 4.584743 ACCCTGTCATTCTCCTTCAAAAAC 59.415 41.667 0.00 0.00 0.00 2.43
2448 7435 4.021981 CCCTGTCATTCTCCTTCAAAAACC 60.022 45.833 0.00 0.00 0.00 3.27
2449 7436 4.584325 CCTGTCATTCTCCTTCAAAAACCA 59.416 41.667 0.00 0.00 0.00 3.67
2450 7437 5.507985 CCTGTCATTCTCCTTCAAAAACCAC 60.508 44.000 0.00 0.00 0.00 4.16
2451 7438 4.340950 TGTCATTCTCCTTCAAAAACCACC 59.659 41.667 0.00 0.00 0.00 4.61
2452 7439 4.584743 GTCATTCTCCTTCAAAAACCACCT 59.415 41.667 0.00 0.00 0.00 4.00
2453 7440 4.827284 TCATTCTCCTTCAAAAACCACCTC 59.173 41.667 0.00 0.00 0.00 3.85
2454 7441 3.943671 TCTCCTTCAAAAACCACCTCA 57.056 42.857 0.00 0.00 0.00 3.86
2455 7442 4.243793 TCTCCTTCAAAAACCACCTCAA 57.756 40.909 0.00 0.00 0.00 3.02
2456 7443 3.951680 TCTCCTTCAAAAACCACCTCAAC 59.048 43.478 0.00 0.00 0.00 3.18
2457 7444 3.028130 TCCTTCAAAAACCACCTCAACC 58.972 45.455 0.00 0.00 0.00 3.77
2458 7445 2.223711 CCTTCAAAAACCACCTCAACCG 60.224 50.000 0.00 0.00 0.00 4.44
2459 7446 2.421751 TCAAAAACCACCTCAACCGA 57.578 45.000 0.00 0.00 0.00 4.69
2460 7447 2.724454 TCAAAAACCACCTCAACCGAA 58.276 42.857 0.00 0.00 0.00 4.30
2461 7448 3.292460 TCAAAAACCACCTCAACCGAAT 58.708 40.909 0.00 0.00 0.00 3.34
2462 7449 4.462133 TCAAAAACCACCTCAACCGAATA 58.538 39.130 0.00 0.00 0.00 1.75
2463 7450 4.888239 TCAAAAACCACCTCAACCGAATAA 59.112 37.500 0.00 0.00 0.00 1.40
2464 7451 5.009210 TCAAAAACCACCTCAACCGAATAAG 59.991 40.000 0.00 0.00 0.00 1.73
2465 7452 2.781681 ACCACCTCAACCGAATAAGG 57.218 50.000 0.00 0.00 34.94 2.69
2466 7453 1.339727 ACCACCTCAACCGAATAAGGC 60.340 52.381 0.00 0.00 31.79 4.35
2467 7454 1.379527 CACCTCAACCGAATAAGGCC 58.620 55.000 0.00 0.00 31.79 5.19
2468 7455 1.065418 CACCTCAACCGAATAAGGCCT 60.065 52.381 0.00 0.00 31.79 5.19
2469 7456 1.065418 ACCTCAACCGAATAAGGCCTG 60.065 52.381 5.69 0.00 31.79 4.85
2470 7457 1.209504 CCTCAACCGAATAAGGCCTGA 59.790 52.381 5.69 0.00 33.69 3.86
2471 7458 2.280628 CTCAACCGAATAAGGCCTGAC 58.719 52.381 5.69 0.00 33.69 3.51
2472 7459 1.006832 CAACCGAATAAGGCCTGACG 58.993 55.000 5.69 10.10 33.69 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.814294 ATCCAGCCCGACGAACGC 62.814 66.667 0.00 0.00 41.07 4.84
12 13 1.740296 AAATCCAGCCCGACGAACG 60.740 57.895 0.00 0.00 42.18 3.95
14 15 2.038269 GCAAATCCAGCCCGACGAA 61.038 57.895 0.00 0.00 0.00 3.85
15 16 2.435938 GCAAATCCAGCCCGACGA 60.436 61.111 0.00 0.00 0.00 4.20
16 17 3.508840 GGCAAATCCAGCCCGACG 61.509 66.667 0.00 0.00 46.50 5.12
24 25 1.971167 GTCGCAGTGGGCAAATCCA 60.971 57.895 1.51 0.00 45.17 3.41
36 37 4.177026 ACTAAGAGCATTTACAGTCGCAG 58.823 43.478 0.00 0.00 0.00 5.18
37 38 4.082190 AGACTAAGAGCATTTACAGTCGCA 60.082 41.667 0.00 0.00 0.00 5.10
38 39 4.266502 CAGACTAAGAGCATTTACAGTCGC 59.733 45.833 0.00 0.00 0.00 5.19
40 41 8.758633 TTTACAGACTAAGAGCATTTACAGTC 57.241 34.615 0.00 0.00 0.00 3.51
57 58 1.202031 CGGCGGATGCTTTTTACAGAC 60.202 52.381 0.00 0.00 42.25 3.51
59 60 1.083489 TCGGCGGATGCTTTTTACAG 58.917 50.000 7.21 0.00 42.25 2.74
60 61 1.400142 CATCGGCGGATGCTTTTTACA 59.600 47.619 19.75 0.00 43.26 2.41
129 150 2.224113 ACCAAAAGGCAATGCTGTCAAG 60.224 45.455 4.82 0.00 0.00 3.02
132 153 2.407090 GAACCAAAAGGCAATGCTGTC 58.593 47.619 4.82 0.00 0.00 3.51
184 205 4.789012 AGTACCATGGTGCATTTTCTTG 57.211 40.909 31.23 0.00 33.14 3.02
187 208 4.941263 TGACTAGTACCATGGTGCATTTTC 59.059 41.667 31.23 21.24 33.14 2.29
198 221 4.467795 ACAAGAGCACATGACTAGTACCAT 59.532 41.667 0.00 0.00 0.00 3.55
334 363 2.935201 GTGATGCTGTCCTCTAGCTTTG 59.065 50.000 0.00 0.00 41.66 2.77
400 429 7.882271 GGGGAGATGATATGATATAGAAATGGC 59.118 40.741 0.00 0.00 0.00 4.40
417 449 1.694150 GATCCAATCGTGGGGAGATGA 59.306 52.381 0.00 0.00 46.01 2.92
448 480 2.113774 CTGGTTGGCAGTGCTGGA 59.886 61.111 16.11 0.00 0.00 3.86
449 481 2.203394 ACTGGTTGGCAGTGCTGG 60.203 61.111 16.11 1.97 0.00 4.85
450 482 2.558286 CCACTGGTTGGCAGTGCTG 61.558 63.158 16.11 3.03 46.22 4.41
451 483 2.203394 CCACTGGTTGGCAGTGCT 60.203 61.111 16.11 0.00 46.22 4.40
459 491 2.195567 CACTGGGTGCCACTGGTTG 61.196 63.158 0.00 0.00 0.00 3.77
460 492 2.195683 CACTGGGTGCCACTGGTT 59.804 61.111 0.00 0.00 0.00 3.67
461 493 2.772191 TCACTGGGTGCCACTGGT 60.772 61.111 0.00 0.00 32.98 4.00
514 546 3.637273 AAGGTCTGGGGTGACGGC 61.637 66.667 0.00 0.00 37.81 5.68
523 555 0.036010 ATTGTCTCGGCAAGGTCTGG 60.036 55.000 0.00 0.00 0.00 3.86
524 556 1.081892 CATTGTCTCGGCAAGGTCTG 58.918 55.000 0.00 0.00 0.00 3.51
525 557 0.036010 CCATTGTCTCGGCAAGGTCT 60.036 55.000 0.00 0.00 0.00 3.85
536 568 2.270205 CCGCTGGCTCCATTGTCT 59.730 61.111 0.00 0.00 0.00 3.41
582 617 2.072487 GGCCAGCAGGATGGGTAGA 61.072 63.158 5.64 0.00 40.97 2.59
1155 1202 1.299976 GACGAGGAGGTTGGGCAAT 59.700 57.895 0.00 0.00 0.00 3.56
1186 1233 1.468914 CAATGGAGTCGAGACAGACGA 59.531 52.381 5.99 0.00 45.26 4.20
1210 1306 4.576053 CACTCACAGAGTTCACAATGGAAA 59.424 41.667 0.00 0.00 41.37 3.13
1211 1307 4.129380 CACTCACAGAGTTCACAATGGAA 58.871 43.478 0.00 0.00 41.37 3.53
1251 1349 2.437413 GATCCCAACCTGTTCCAAGAC 58.563 52.381 0.00 0.00 0.00 3.01
1454 6412 0.249073 GTCAGAGCGTGGCGATGTAT 60.249 55.000 0.00 0.00 0.00 2.29
1473 6431 2.728318 CTGATTGCGTACTGGATCATCG 59.272 50.000 0.00 0.00 0.00 3.84
1477 6436 2.120232 CGACTGATTGCGTACTGGATC 58.880 52.381 0.00 0.00 0.00 3.36
1497 6456 3.289834 CAGGCAGGCACACACACC 61.290 66.667 0.00 0.00 0.00 4.16
1646 6626 0.892755 ACAACTCATGGCAGCAATGG 59.107 50.000 10.09 3.55 0.00 3.16
1659 6639 6.072175 TGTTCCTACAATGCCAATAACAACTC 60.072 38.462 0.00 0.00 0.00 3.01
1669 6649 3.222173 ACACTTGTTCCTACAATGCCA 57.778 42.857 0.00 0.00 43.02 4.92
1686 6666 4.258702 ACTGGTGATGAGACTGTTACAC 57.741 45.455 0.00 0.00 0.00 2.90
1763 6743 6.348868 GGCTTCTTTTCACTTTCATCAGGTAG 60.349 42.308 0.00 0.00 0.00 3.18
1764 6744 5.473504 GGCTTCTTTTCACTTTCATCAGGTA 59.526 40.000 0.00 0.00 0.00 3.08
1765 6745 4.279420 GGCTTCTTTTCACTTTCATCAGGT 59.721 41.667 0.00 0.00 0.00 4.00
1767 6747 5.009410 ACAGGCTTCTTTTCACTTTCATCAG 59.991 40.000 0.00 0.00 0.00 2.90
1768 6748 4.889409 ACAGGCTTCTTTTCACTTTCATCA 59.111 37.500 0.00 0.00 0.00 3.07
1769 6749 5.444663 ACAGGCTTCTTTTCACTTTCATC 57.555 39.130 0.00 0.00 0.00 2.92
1770 6750 5.859205 AACAGGCTTCTTTTCACTTTCAT 57.141 34.783 0.00 0.00 0.00 2.57
1773 6753 5.659440 TGAAACAGGCTTCTTTTCACTTT 57.341 34.783 10.27 0.00 34.96 2.66
1796 6777 2.614829 ACTAACAAAGTCTGTGCCGT 57.385 45.000 0.00 0.00 38.67 5.68
1798 6779 8.494016 AGATAATAACTAACAAAGTCTGTGCC 57.506 34.615 0.00 0.00 38.67 5.01
1813 6794 9.128404 TGTATCTTCGGTGTGTAGATAATAACT 57.872 33.333 0.00 0.00 38.30 2.24
1816 6797 9.908152 CATTGTATCTTCGGTGTGTAGATAATA 57.092 33.333 0.00 0.00 38.30 0.98
1818 6799 7.778083 ACATTGTATCTTCGGTGTGTAGATAA 58.222 34.615 0.00 0.00 38.30 1.75
1820 6801 6.222038 ACATTGTATCTTCGGTGTGTAGAT 57.778 37.500 0.00 0.00 38.20 1.98
1821 6802 5.654603 ACATTGTATCTTCGGTGTGTAGA 57.345 39.130 0.00 0.00 0.00 2.59
1822 6803 5.637810 ACAACATTGTATCTTCGGTGTGTAG 59.362 40.000 0.00 0.00 40.16 2.74
1830 6817 9.684448 ATCTATGTCTACAACATTGTATCTTCG 57.316 33.333 4.98 0.00 46.73 3.79
1834 6821 9.764363 TCCAATCTATGTCTACAACATTGTATC 57.236 33.333 4.98 3.38 46.73 2.24
1843 6830 8.144478 GCTGTAGATTCCAATCTATGTCTACAA 58.856 37.037 11.37 0.80 46.42 2.41
1848 6835 5.403766 CGTGCTGTAGATTCCAATCTATGTC 59.596 44.000 11.37 5.47 46.42 3.06
1883 6870 1.277842 TGCGAGAAAACATGAGGCCTA 59.722 47.619 4.42 0.00 0.00 3.93
1885 6872 0.881118 TTGCGAGAAAACATGAGGCC 59.119 50.000 0.00 0.00 0.00 5.19
1921 6908 2.668457 GCAACGAGTTACAGACATGAGG 59.332 50.000 0.00 0.00 0.00 3.86
1929 6916 4.732285 ATGAGTTTGCAACGAGTTACAG 57.268 40.909 0.00 0.00 36.23 2.74
1938 6925 5.290158 CAGCCAATATCAATGAGTTTGCAAC 59.710 40.000 0.00 0.00 35.16 4.17
1959 6946 8.202811 TCATTGATAGATATTGATAGCTCCAGC 58.797 37.037 0.00 0.00 42.49 4.85
1998 6985 1.053424 TTACTGGAACCGGAAGCAGT 58.947 50.000 9.46 5.98 35.42 4.40
2068 7055 6.706270 TGACTCCAACACTCTTACATTTCTTC 59.294 38.462 0.00 0.00 0.00 2.87
2069 7056 6.483640 GTGACTCCAACACTCTTACATTTCTT 59.516 38.462 0.00 0.00 35.66 2.52
2070 7057 5.992217 GTGACTCCAACACTCTTACATTTCT 59.008 40.000 0.00 0.00 35.66 2.52
2071 7058 5.758296 TGTGACTCCAACACTCTTACATTTC 59.242 40.000 0.00 0.00 38.81 2.17
2072 7059 5.527582 GTGTGACTCCAACACTCTTACATTT 59.472 40.000 0.00 0.00 38.81 2.32
2073 7060 5.057149 GTGTGACTCCAACACTCTTACATT 58.943 41.667 0.00 0.00 38.81 2.71
2074 7061 4.503296 GGTGTGACTCCAACACTCTTACAT 60.503 45.833 6.65 0.00 38.81 2.29
2075 7062 3.181469 GGTGTGACTCCAACACTCTTACA 60.181 47.826 6.65 0.00 38.81 2.41
2076 7063 3.069729 AGGTGTGACTCCAACACTCTTAC 59.930 47.826 6.45 0.00 38.81 2.34
2077 7064 3.069586 CAGGTGTGACTCCAACACTCTTA 59.930 47.826 6.45 0.00 38.81 2.10
2078 7065 2.119495 AGGTGTGACTCCAACACTCTT 58.881 47.619 6.45 0.00 38.81 2.85
2105 7092 2.807967 CGTTCCTTCAATCTGAACAGCA 59.192 45.455 0.00 0.00 38.59 4.41
2111 7098 2.612972 GCTGGTCGTTCCTTCAATCTGA 60.613 50.000 1.80 0.00 37.07 3.27
2130 7117 4.261656 GGAGTATGTAGTAATGCACGAGCT 60.262 45.833 6.36 0.00 42.74 4.09
2131 7118 3.982058 GGAGTATGTAGTAATGCACGAGC 59.018 47.826 0.00 0.00 42.57 5.03
2132 7119 4.278669 AGGGAGTATGTAGTAATGCACGAG 59.721 45.833 0.00 0.00 0.00 4.18
2182 7169 1.562783 GGAGGTCCTCTGCAAGTAGT 58.437 55.000 18.58 0.00 33.66 2.73
2202 7189 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
2205 7192 5.606348 ACTTCTCTCTCTCTCTCTCTCTC 57.394 47.826 0.00 0.00 0.00 3.20
2207 7194 7.439655 GTCATTACTTCTCTCTCTCTCTCTCTC 59.560 44.444 0.00 0.00 0.00 3.20
2209 7196 6.483640 GGTCATTACTTCTCTCTCTCTCTCTC 59.516 46.154 0.00 0.00 0.00 3.20
2211 7198 6.119536 TGGTCATTACTTCTCTCTCTCTCTC 58.880 44.000 0.00 0.00 0.00 3.20
2213 7200 6.959639 ATGGTCATTACTTCTCTCTCTCTC 57.040 41.667 0.00 0.00 0.00 3.20
2221 7208 2.032178 GCCGCAATGGTCATTACTTCTC 59.968 50.000 0.00 0.00 41.21 2.87
2222 7209 2.017049 GCCGCAATGGTCATTACTTCT 58.983 47.619 0.00 0.00 41.21 2.85
2223 7210 1.065551 GGCCGCAATGGTCATTACTTC 59.934 52.381 0.00 0.00 44.04 3.01
2224 7211 1.102978 GGCCGCAATGGTCATTACTT 58.897 50.000 0.00 0.00 44.04 2.24
2225 7212 1.095228 CGGCCGCAATGGTCATTACT 61.095 55.000 14.67 0.00 45.31 2.24
2226 7213 1.355210 CGGCCGCAATGGTCATTAC 59.645 57.895 14.67 0.00 45.31 1.89
2227 7214 2.477176 GCGGCCGCAATGGTCATTA 61.477 57.895 43.55 0.00 45.31 1.90
2228 7215 3.825611 GCGGCCGCAATGGTCATT 61.826 61.111 43.55 0.00 45.31 2.57
2238 7225 4.990553 GGAGGGATTAGCGGCCGC 62.991 72.222 42.34 42.34 42.33 6.53
2239 7226 4.664677 CGGAGGGATTAGCGGCCG 62.665 72.222 24.05 24.05 0.00 6.13
2240 7227 4.990553 GCGGAGGGATTAGCGGCC 62.991 72.222 0.00 0.00 0.00 6.13
2241 7228 4.235762 TGCGGAGGGATTAGCGGC 62.236 66.667 0.00 0.00 0.00 6.53
2242 7229 2.029666 CTGCGGAGGGATTAGCGG 59.970 66.667 0.00 0.00 0.00 5.52
2243 7230 1.006805 CTCTGCGGAGGGATTAGCG 60.007 63.158 15.27 0.00 36.03 4.26
2244 7231 0.316841 CTCTCTGCGGAGGGATTAGC 59.683 60.000 18.32 0.00 42.46 3.09
2245 7232 1.885887 CTCTCTCTGCGGAGGGATTAG 59.114 57.143 25.44 13.21 46.71 1.73
2246 7233 1.495148 TCTCTCTCTGCGGAGGGATTA 59.505 52.381 25.44 13.93 46.71 1.75
2247 7234 0.260230 TCTCTCTCTGCGGAGGGATT 59.740 55.000 25.44 0.00 46.71 3.01
2248 7235 0.178992 CTCTCTCTCTGCGGAGGGAT 60.179 60.000 25.44 0.00 46.71 3.85
2249 7236 1.225983 CTCTCTCTCTGCGGAGGGA 59.774 63.158 23.84 23.84 45.89 4.20
2250 7237 0.819259 CTCTCTCTCTCTGCGGAGGG 60.819 65.000 22.38 19.85 41.26 4.30
2251 7238 0.180171 TCTCTCTCTCTCTGCGGAGG 59.820 60.000 22.38 12.97 39.86 4.30
2252 7239 1.138859 TCTCTCTCTCTCTCTGCGGAG 59.861 57.143 16.98 16.98 40.73 4.63
2253 7240 1.138859 CTCTCTCTCTCTCTCTGCGGA 59.861 57.143 0.00 0.00 0.00 5.54
2254 7241 1.138859 TCTCTCTCTCTCTCTCTGCGG 59.861 57.143 0.00 0.00 0.00 5.69
2255 7242 2.101415 TCTCTCTCTCTCTCTCTCTGCG 59.899 54.545 0.00 0.00 0.00 5.18
2256 7243 3.462021 GTCTCTCTCTCTCTCTCTCTGC 58.538 54.545 0.00 0.00 0.00 4.26
2257 7244 3.181461 GGGTCTCTCTCTCTCTCTCTCTG 60.181 56.522 0.00 0.00 0.00 3.35
2258 7245 3.041946 GGGTCTCTCTCTCTCTCTCTCT 58.958 54.545 0.00 0.00 0.00 3.10
2259 7246 3.041946 AGGGTCTCTCTCTCTCTCTCTC 58.958 54.545 0.00 0.00 0.00 3.20
2260 7247 3.041946 GAGGGTCTCTCTCTCTCTCTCT 58.958 54.545 0.00 0.00 40.34 3.10
2261 7248 3.477210 GAGGGTCTCTCTCTCTCTCTC 57.523 57.143 0.00 0.00 40.34 3.20
2271 7258 1.516892 CAGCAGCAGAGGGTCTCTC 59.483 63.158 0.00 0.00 38.99 3.20
2272 7259 1.988956 CCAGCAGCAGAGGGTCTCT 60.989 63.158 0.00 0.00 42.11 3.10
2273 7260 1.835927 AACCAGCAGCAGAGGGTCTC 61.836 60.000 0.00 0.00 32.01 3.36
2274 7261 1.845205 AACCAGCAGCAGAGGGTCT 60.845 57.895 0.00 0.00 32.01 3.85
2275 7262 1.673665 CAACCAGCAGCAGAGGGTC 60.674 63.158 0.00 0.00 32.01 4.46
2276 7263 1.495579 ATCAACCAGCAGCAGAGGGT 61.496 55.000 0.00 0.00 34.43 4.34
2277 7264 1.030488 CATCAACCAGCAGCAGAGGG 61.030 60.000 0.00 0.00 0.00 4.30
2278 7265 0.322277 ACATCAACCAGCAGCAGAGG 60.322 55.000 0.00 0.00 0.00 3.69
2279 7266 0.803117 CACATCAACCAGCAGCAGAG 59.197 55.000 0.00 0.00 0.00 3.35
2280 7267 0.109153 ACACATCAACCAGCAGCAGA 59.891 50.000 0.00 0.00 0.00 4.26
2281 7268 0.520404 GACACATCAACCAGCAGCAG 59.480 55.000 0.00 0.00 0.00 4.24
2282 7269 1.229975 CGACACATCAACCAGCAGCA 61.230 55.000 0.00 0.00 0.00 4.41
2283 7270 1.499056 CGACACATCAACCAGCAGC 59.501 57.895 0.00 0.00 0.00 5.25
2284 7271 1.915614 GCCGACACATCAACCAGCAG 61.916 60.000 0.00 0.00 0.00 4.24
2285 7272 1.965930 GCCGACACATCAACCAGCA 60.966 57.895 0.00 0.00 0.00 4.41
2286 7273 2.690778 GGCCGACACATCAACCAGC 61.691 63.158 0.00 0.00 0.00 4.85
2287 7274 2.040544 GGGCCGACACATCAACCAG 61.041 63.158 0.00 0.00 0.00 4.00
2288 7275 2.033448 GGGCCGACACATCAACCA 59.967 61.111 0.00 0.00 0.00 3.67
2289 7276 2.033448 TGGGCCGACACATCAACC 59.967 61.111 0.00 0.00 0.00 3.77
2290 7277 1.599518 TGTGGGCCGACACATCAAC 60.600 57.895 17.62 0.00 45.70 3.18
2291 7278 2.832498 TGTGGGCCGACACATCAA 59.168 55.556 17.62 0.00 45.70 2.57
2303 7290 2.821366 GAGGATGCACGCTGTGGG 60.821 66.667 10.02 0.00 33.64 4.61
2304 7291 2.104859 CAGAGGATGCACGCTGTGG 61.105 63.158 10.02 0.00 33.64 4.17
2305 7292 3.482809 CAGAGGATGCACGCTGTG 58.517 61.111 0.00 4.61 36.51 3.66
2314 7301 1.792115 AGAGGAAGGAGCAGAGGATG 58.208 55.000 0.00 0.00 0.00 3.51
2315 7302 2.566708 AAGAGGAAGGAGCAGAGGAT 57.433 50.000 0.00 0.00 0.00 3.24
2316 7303 2.334006 AAAGAGGAAGGAGCAGAGGA 57.666 50.000 0.00 0.00 0.00 3.71
2317 7304 4.512484 CTTAAAAGAGGAAGGAGCAGAGG 58.488 47.826 0.00 0.00 0.00 3.69
2318 7305 4.512484 CCTTAAAAGAGGAAGGAGCAGAG 58.488 47.826 0.00 0.00 44.36 3.35
2319 7306 3.307762 GCCTTAAAAGAGGAAGGAGCAGA 60.308 47.826 4.85 0.00 44.36 4.26
2320 7307 3.013219 GCCTTAAAAGAGGAAGGAGCAG 58.987 50.000 4.85 0.00 44.36 4.24
2321 7308 2.290960 GGCCTTAAAAGAGGAAGGAGCA 60.291 50.000 4.85 0.00 44.36 4.26
2322 7309 2.025793 AGGCCTTAAAAGAGGAAGGAGC 60.026 50.000 0.00 0.00 44.36 4.70
2323 7310 4.013050 CAAGGCCTTAAAAGAGGAAGGAG 58.987 47.826 20.00 0.00 44.36 3.69
2324 7311 3.397955 ACAAGGCCTTAAAAGAGGAAGGA 59.602 43.478 20.00 0.00 44.36 3.36
2325 7312 3.767711 ACAAGGCCTTAAAAGAGGAAGG 58.232 45.455 20.00 3.39 44.40 3.46
2326 7313 4.083271 CGAACAAGGCCTTAAAAGAGGAAG 60.083 45.833 20.00 3.96 39.25 3.46
2327 7314 3.818773 CGAACAAGGCCTTAAAAGAGGAA 59.181 43.478 20.00 0.00 39.25 3.36
2328 7315 3.181448 ACGAACAAGGCCTTAAAAGAGGA 60.181 43.478 20.00 0.00 39.25 3.71
2329 7316 3.146847 ACGAACAAGGCCTTAAAAGAGG 58.853 45.455 20.00 6.42 39.93 3.69
2330 7317 4.830826 AACGAACAAGGCCTTAAAAGAG 57.169 40.909 20.00 7.24 0.00 2.85
2331 7318 6.696441 TTAAACGAACAAGGCCTTAAAAGA 57.304 33.333 20.00 0.00 0.00 2.52
2332 7319 6.584942 GGATTAAACGAACAAGGCCTTAAAAG 59.415 38.462 20.00 12.78 0.00 2.27
2333 7320 6.265876 AGGATTAAACGAACAAGGCCTTAAAA 59.734 34.615 20.00 4.25 0.00 1.52
2334 7321 5.771165 AGGATTAAACGAACAAGGCCTTAAA 59.229 36.000 20.00 3.20 0.00 1.52
2335 7322 5.318630 AGGATTAAACGAACAAGGCCTTAA 58.681 37.500 20.00 6.60 0.00 1.85
2336 7323 4.913784 AGGATTAAACGAACAAGGCCTTA 58.086 39.130 20.00 0.00 0.00 2.69
2337 7324 3.756963 GAGGATTAAACGAACAAGGCCTT 59.243 43.478 13.78 13.78 0.00 4.35
2338 7325 3.344515 GAGGATTAAACGAACAAGGCCT 58.655 45.455 0.00 0.00 0.00 5.19
2339 7326 2.422479 GGAGGATTAAACGAACAAGGCC 59.578 50.000 0.00 0.00 0.00 5.19
2340 7327 3.344515 AGGAGGATTAAACGAACAAGGC 58.655 45.455 0.00 0.00 0.00 4.35
2341 7328 4.833390 AGAGGAGGATTAAACGAACAAGG 58.167 43.478 0.00 0.00 0.00 3.61
2342 7329 5.479306 TGAGAGGAGGATTAAACGAACAAG 58.521 41.667 0.00 0.00 0.00 3.16
2343 7330 5.477607 TGAGAGGAGGATTAAACGAACAA 57.522 39.130 0.00 0.00 0.00 2.83
2344 7331 5.477607 TTGAGAGGAGGATTAAACGAACA 57.522 39.130 0.00 0.00 0.00 3.18
2345 7332 4.870991 CCTTGAGAGGAGGATTAAACGAAC 59.129 45.833 0.00 0.00 46.74 3.95
2346 7333 5.086104 CCTTGAGAGGAGGATTAAACGAA 57.914 43.478 0.00 0.00 46.74 3.85
2347 7334 4.737855 CCTTGAGAGGAGGATTAAACGA 57.262 45.455 0.00 0.00 46.74 3.85
2359 7346 2.170187 CCACTCCAATCTCCTTGAGAGG 59.830 54.545 0.00 0.00 42.26 3.69
2360 7347 3.102972 TCCACTCCAATCTCCTTGAGAG 58.897 50.000 0.00 0.00 42.26 3.20
2361 7348 3.190383 TCCACTCCAATCTCCTTGAGA 57.810 47.619 0.00 0.00 43.20 3.27
2362 7349 4.197750 CAATCCACTCCAATCTCCTTGAG 58.802 47.826 0.00 0.00 36.97 3.02
2363 7350 3.054139 CCAATCCACTCCAATCTCCTTGA 60.054 47.826 0.00 0.00 36.97 3.02
2364 7351 3.054139 TCCAATCCACTCCAATCTCCTTG 60.054 47.826 0.00 0.00 34.42 3.61
2365 7352 3.192944 TCCAATCCACTCCAATCTCCTT 58.807 45.455 0.00 0.00 0.00 3.36
2366 7353 2.776536 CTCCAATCCACTCCAATCTCCT 59.223 50.000 0.00 0.00 0.00 3.69
2367 7354 2.774234 TCTCCAATCCACTCCAATCTCC 59.226 50.000 0.00 0.00 0.00 3.71
2368 7355 3.708631 TCTCTCCAATCCACTCCAATCTC 59.291 47.826 0.00 0.00 0.00 2.75
2369 7356 3.729108 TCTCTCCAATCCACTCCAATCT 58.271 45.455 0.00 0.00 0.00 2.40
2370 7357 4.494091 TTCTCTCCAATCCACTCCAATC 57.506 45.455 0.00 0.00 0.00 2.67
2371 7358 5.463051 AATTCTCTCCAATCCACTCCAAT 57.537 39.130 0.00 0.00 0.00 3.16
2372 7359 4.934797 AATTCTCTCCAATCCACTCCAA 57.065 40.909 0.00 0.00 0.00 3.53
2373 7360 4.934797 AAATTCTCTCCAATCCACTCCA 57.065 40.909 0.00 0.00 0.00 3.86
2374 7361 5.124617 GTCAAAATTCTCTCCAATCCACTCC 59.875 44.000 0.00 0.00 0.00 3.85
2375 7362 5.942826 AGTCAAAATTCTCTCCAATCCACTC 59.057 40.000 0.00 0.00 0.00 3.51
2376 7363 5.885465 AGTCAAAATTCTCTCCAATCCACT 58.115 37.500 0.00 0.00 0.00 4.00
2377 7364 6.015940 ACAAGTCAAAATTCTCTCCAATCCAC 60.016 38.462 0.00 0.00 0.00 4.02
2378 7365 6.070656 ACAAGTCAAAATTCTCTCCAATCCA 58.929 36.000 0.00 0.00 0.00 3.41
2379 7366 6.581171 ACAAGTCAAAATTCTCTCCAATCC 57.419 37.500 0.00 0.00 0.00 3.01
2380 7367 7.148171 CCCTACAAGTCAAAATTCTCTCCAATC 60.148 40.741 0.00 0.00 0.00 2.67
2381 7368 6.660949 CCCTACAAGTCAAAATTCTCTCCAAT 59.339 38.462 0.00 0.00 0.00 3.16
2382 7369 6.003950 CCCTACAAGTCAAAATTCTCTCCAA 58.996 40.000 0.00 0.00 0.00 3.53
2383 7370 5.514834 CCCCTACAAGTCAAAATTCTCTCCA 60.515 44.000 0.00 0.00 0.00 3.86
2384 7371 4.944317 CCCCTACAAGTCAAAATTCTCTCC 59.056 45.833 0.00 0.00 0.00 3.71
2385 7372 5.561679 ACCCCTACAAGTCAAAATTCTCTC 58.438 41.667 0.00 0.00 0.00 3.20
2386 7373 5.584551 ACCCCTACAAGTCAAAATTCTCT 57.415 39.130 0.00 0.00 0.00 3.10
2387 7374 6.004574 AGAACCCCTACAAGTCAAAATTCTC 58.995 40.000 0.00 0.00 0.00 2.87
2388 7375 5.953571 AGAACCCCTACAAGTCAAAATTCT 58.046 37.500 0.00 0.00 0.00 2.40
2389 7376 7.754851 TTAGAACCCCTACAAGTCAAAATTC 57.245 36.000 0.00 0.00 0.00 2.17
2390 7377 7.396339 GGATTAGAACCCCTACAAGTCAAAATT 59.604 37.037 0.00 0.00 0.00 1.82
2391 7378 6.890268 GGATTAGAACCCCTACAAGTCAAAAT 59.110 38.462 0.00 0.00 0.00 1.82
2392 7379 6.243148 GGATTAGAACCCCTACAAGTCAAAA 58.757 40.000 0.00 0.00 0.00 2.44
2393 7380 5.280830 GGGATTAGAACCCCTACAAGTCAAA 60.281 44.000 0.00 0.00 41.38 2.69
2394 7381 4.226620 GGGATTAGAACCCCTACAAGTCAA 59.773 45.833 0.00 0.00 41.38 3.18
2395 7382 3.778629 GGGATTAGAACCCCTACAAGTCA 59.221 47.826 0.00 0.00 41.38 3.41
2396 7383 4.418973 GGGATTAGAACCCCTACAAGTC 57.581 50.000 0.00 0.00 41.38 3.01
2405 7392 2.357881 GGTTTGAGGGGGATTAGAACCC 60.358 54.545 0.00 0.00 46.59 4.11
2406 7393 2.357881 GGGTTTGAGGGGGATTAGAACC 60.358 54.545 0.00 0.00 35.49 3.62
2407 7394 2.581246 AGGGTTTGAGGGGGATTAGAAC 59.419 50.000 0.00 0.00 0.00 3.01
2408 7395 2.580783 CAGGGTTTGAGGGGGATTAGAA 59.419 50.000 0.00 0.00 0.00 2.10
2409 7396 2.205342 CAGGGTTTGAGGGGGATTAGA 58.795 52.381 0.00 0.00 0.00 2.10
2410 7397 1.923148 ACAGGGTTTGAGGGGGATTAG 59.077 52.381 0.00 0.00 0.00 1.73
2411 7398 1.920351 GACAGGGTTTGAGGGGGATTA 59.080 52.381 0.00 0.00 0.00 1.75
2412 7399 0.704664 GACAGGGTTTGAGGGGGATT 59.295 55.000 0.00 0.00 0.00 3.01
2413 7400 0.477597 TGACAGGGTTTGAGGGGGAT 60.478 55.000 0.00 0.00 0.00 3.85
2414 7401 0.477597 ATGACAGGGTTTGAGGGGGA 60.478 55.000 0.00 0.00 0.00 4.81
2415 7402 0.409484 AATGACAGGGTTTGAGGGGG 59.591 55.000 0.00 0.00 0.00 5.40
2416 7403 1.355720 AGAATGACAGGGTTTGAGGGG 59.644 52.381 0.00 0.00 0.00 4.79
2417 7404 2.619074 GGAGAATGACAGGGTTTGAGGG 60.619 54.545 0.00 0.00 0.00 4.30
2418 7405 2.307098 AGGAGAATGACAGGGTTTGAGG 59.693 50.000 0.00 0.00 0.00 3.86
2419 7406 3.710209 AGGAGAATGACAGGGTTTGAG 57.290 47.619 0.00 0.00 0.00 3.02
2420 7407 3.394274 TGAAGGAGAATGACAGGGTTTGA 59.606 43.478 0.00 0.00 0.00 2.69
2421 7408 3.754965 TGAAGGAGAATGACAGGGTTTG 58.245 45.455 0.00 0.00 0.00 2.93
2422 7409 4.453480 TTGAAGGAGAATGACAGGGTTT 57.547 40.909 0.00 0.00 0.00 3.27
2423 7410 4.453480 TTTGAAGGAGAATGACAGGGTT 57.547 40.909 0.00 0.00 0.00 4.11
2424 7411 4.453480 TTTTGAAGGAGAATGACAGGGT 57.547 40.909 0.00 0.00 0.00 4.34
2425 7412 4.021981 GGTTTTTGAAGGAGAATGACAGGG 60.022 45.833 0.00 0.00 0.00 4.45
2426 7413 4.584325 TGGTTTTTGAAGGAGAATGACAGG 59.416 41.667 0.00 0.00 0.00 4.00
2427 7414 5.507985 GGTGGTTTTTGAAGGAGAATGACAG 60.508 44.000 0.00 0.00 0.00 3.51
2428 7415 4.340950 GGTGGTTTTTGAAGGAGAATGACA 59.659 41.667 0.00 0.00 0.00 3.58
2429 7416 4.584743 AGGTGGTTTTTGAAGGAGAATGAC 59.415 41.667 0.00 0.00 0.00 3.06
2430 7417 4.803452 AGGTGGTTTTTGAAGGAGAATGA 58.197 39.130 0.00 0.00 0.00 2.57
2431 7418 4.584325 TGAGGTGGTTTTTGAAGGAGAATG 59.416 41.667 0.00 0.00 0.00 2.67
2432 7419 4.803452 TGAGGTGGTTTTTGAAGGAGAAT 58.197 39.130 0.00 0.00 0.00 2.40
2433 7420 4.243793 TGAGGTGGTTTTTGAAGGAGAA 57.756 40.909 0.00 0.00 0.00 2.87
2434 7421 3.943671 TGAGGTGGTTTTTGAAGGAGA 57.056 42.857 0.00 0.00 0.00 3.71
2435 7422 3.068165 GGTTGAGGTGGTTTTTGAAGGAG 59.932 47.826 0.00 0.00 0.00 3.69
2436 7423 3.028130 GGTTGAGGTGGTTTTTGAAGGA 58.972 45.455 0.00 0.00 0.00 3.36
2437 7424 2.223711 CGGTTGAGGTGGTTTTTGAAGG 60.224 50.000 0.00 0.00 0.00 3.46
2438 7425 2.685897 TCGGTTGAGGTGGTTTTTGAAG 59.314 45.455 0.00 0.00 0.00 3.02
2439 7426 2.724454 TCGGTTGAGGTGGTTTTTGAA 58.276 42.857 0.00 0.00 0.00 2.69
2440 7427 2.421751 TCGGTTGAGGTGGTTTTTGA 57.578 45.000 0.00 0.00 0.00 2.69
2441 7428 3.726291 ATTCGGTTGAGGTGGTTTTTG 57.274 42.857 0.00 0.00 0.00 2.44
2442 7429 4.279922 CCTTATTCGGTTGAGGTGGTTTTT 59.720 41.667 0.00 0.00 0.00 1.94
2443 7430 3.824443 CCTTATTCGGTTGAGGTGGTTTT 59.176 43.478 0.00 0.00 0.00 2.43
2444 7431 3.418047 CCTTATTCGGTTGAGGTGGTTT 58.582 45.455 0.00 0.00 0.00 3.27
2445 7432 2.878526 GCCTTATTCGGTTGAGGTGGTT 60.879 50.000 0.00 0.00 0.00 3.67
2446 7433 1.339727 GCCTTATTCGGTTGAGGTGGT 60.340 52.381 0.00 0.00 0.00 4.16
2447 7434 1.379527 GCCTTATTCGGTTGAGGTGG 58.620 55.000 0.00 0.00 0.00 4.61
2448 7435 1.065418 AGGCCTTATTCGGTTGAGGTG 60.065 52.381 0.00 0.00 0.00 4.00
2449 7436 1.065418 CAGGCCTTATTCGGTTGAGGT 60.065 52.381 0.00 0.00 0.00 3.85
2450 7437 1.209504 TCAGGCCTTATTCGGTTGAGG 59.790 52.381 0.00 0.00 0.00 3.86
2451 7438 2.280628 GTCAGGCCTTATTCGGTTGAG 58.719 52.381 0.00 0.00 0.00 3.02
2452 7439 1.404986 CGTCAGGCCTTATTCGGTTGA 60.405 52.381 0.00 0.00 0.00 3.18
2453 7440 1.006832 CGTCAGGCCTTATTCGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
2454 7441 3.453559 CGTCAGGCCTTATTCGGTT 57.546 52.632 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.