Multiple sequence alignment - TraesCS7D01G018000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G018000 chr7D 100.000 5841 0 0 1 5841 8029422 8035262 0.000000e+00 10787.0
1 TraesCS7D01G018000 chr7D 83.760 3676 516 40 1191 4823 8256070 8252433 0.000000e+00 3406.0
2 TraesCS7D01G018000 chr7D 82.332 3628 581 33 1121 4717 7548287 7551885 0.000000e+00 3094.0
3 TraesCS7D01G018000 chr7D 81.457 3721 586 50 1255 4933 8085336 8088994 0.000000e+00 2953.0
4 TraesCS7D01G018000 chr7D 84.266 2841 383 29 1191 4009 7924312 7927110 0.000000e+00 2712.0
5 TraesCS7D01G018000 chr7D 84.164 2810 399 25 1123 3913 7560976 7563758 0.000000e+00 2682.0
6 TraesCS7D01G018000 chr7D 84.471 2724 355 36 1170 3854 8052745 8055439 0.000000e+00 2625.0
7 TraesCS7D01G018000 chr7D 85.753 1860 246 14 1121 2968 7749902 7751754 0.000000e+00 1949.0
8 TraesCS7D01G018000 chr7D 83.953 1776 255 20 1197 2963 8233447 8235201 0.000000e+00 1674.0
9 TraesCS7D01G018000 chr7D 83.958 1708 263 10 3022 4719 7607902 7609608 0.000000e+00 1626.0
10 TraesCS7D01G018000 chr7D 81.133 1924 314 42 3022 4914 7714335 7716240 0.000000e+00 1496.0
11 TraesCS7D01G018000 chr7D 81.424 1728 286 23 3022 4720 8178781 8180502 0.000000e+00 1380.0
12 TraesCS7D01G018000 chr7D 78.176 1897 349 30 3018 4899 7822110 7823956 0.000000e+00 1149.0
13 TraesCS7D01G018000 chr7D 84.458 1126 173 2 3022 4146 7751751 7752875 0.000000e+00 1109.0
14 TraesCS7D01G018000 chr7D 90.805 174 15 1 5451 5624 8251329 8251157 1.270000e-56 231.0
15 TraesCS7D01G018000 chr7D 88.235 153 16 1 5472 5624 7662692 7662842 1.290000e-41 182.0
16 TraesCS7D01G018000 chr7D 88.235 153 16 1 5472 5624 7681164 7681314 1.290000e-41 182.0
17 TraesCS7D01G018000 chr7D 88.889 117 13 0 1008 1124 592616931 592617047 1.700000e-30 145.0
18 TraesCS7D01G018000 chr7D 86.131 137 11 6 5453 5589 7602526 7602654 2.190000e-29 141.0
19 TraesCS7D01G018000 chr7D 87.705 122 14 1 5489 5610 8221198 8221318 2.190000e-29 141.0
20 TraesCS7D01G018000 chr7D 88.776 98 7 2 6 102 8073378 8073472 3.700000e-22 117.0
21 TraesCS7D01G018000 chr7D 83.495 103 13 2 1 102 7596575 7596674 6.230000e-15 93.5
22 TraesCS7D01G018000 chr7D 96.774 31 1 0 97 127 587384820 587384850 1.100000e-02 52.8
23 TraesCS7D01G018000 chr4A 96.143 4148 144 3 1121 5265 732377954 732382088 0.000000e+00 6759.0
24 TraesCS7D01G018000 chr4A 84.824 3578 477 37 1169 4719 731616891 731613353 0.000000e+00 3539.0
25 TraesCS7D01G018000 chr4A 83.169 3743 545 59 1193 4891 731861828 731858127 0.000000e+00 3343.0
26 TraesCS7D01G018000 chr4A 83.439 2844 432 27 1183 4009 731774385 731771564 0.000000e+00 2606.0
27 TraesCS7D01G018000 chr4A 84.365 1874 257 28 1121 2968 731761352 731759489 0.000000e+00 1805.0
28 TraesCS7D01G018000 chr4A 92.398 1026 39 11 1 1009 732376954 732377957 0.000000e+00 1426.0
29 TraesCS7D01G018000 chr4A 78.997 2014 359 42 3023 5002 732356560 732358543 0.000000e+00 1317.0
30 TraesCS7D01G018000 chr4A 89.062 256 27 1 224 478 742356870 742356615 3.400000e-82 316.0
31 TraesCS7D01G018000 chr4A 87.500 200 8 7 5659 5841 732382267 732382466 1.270000e-51 215.0
32 TraesCS7D01G018000 chr4A 84.916 179 25 2 475 652 731862402 731862225 4.650000e-41 180.0
33 TraesCS7D01G018000 chr4A 95.536 112 5 0 5519 5630 732382157 732382268 4.650000e-41 180.0
34 TraesCS7D01G018000 chr4A 89.109 101 10 1 5453 5553 731735433 731735334 2.210000e-24 124.0
35 TraesCS7D01G018000 chr4A 89.333 75 6 2 5762 5835 731757421 731757348 6.230000e-15 93.5
36 TraesCS7D01G018000 chr4A 92.982 57 4 0 170 226 731862465 731862409 3.750000e-12 84.2
37 TraesCS7D01G018000 chr4A 85.915 71 8 1 5143 5211 732350030 732350100 2.260000e-09 75.0
38 TraesCS7D01G018000 chr4A 87.692 65 3 5 945 1009 731616960 731616901 2.920000e-08 71.3
39 TraesCS7D01G018000 chr4A 100.000 31 0 0 5441 5471 732382123 732382153 2.270000e-04 58.4
40 TraesCS7D01G018000 chr3B 83.443 3642 540 32 1121 4724 741463069 741466685 0.000000e+00 3326.0
41 TraesCS7D01G018000 chr3B 100.000 28 0 0 97 124 526122108 526122135 1.100000e-02 52.8
42 TraesCS7D01G018000 chr7A 83.483 3560 512 35 1191 4714 8695097 8691578 0.000000e+00 3247.0
43 TraesCS7D01G018000 chr7A 84.914 1856 260 12 1124 2962 8653635 8655487 0.000000e+00 1858.0
44 TraesCS7D01G018000 chr7A 87.209 258 18 11 5382 5627 8689772 8689518 4.460000e-71 279.0
45 TraesCS7D01G018000 chr7A 89.041 219 21 2 481 697 8633804 8634021 9.650000e-68 268.0
46 TraesCS7D01G018000 chr7A 89.796 98 6 2 6 102 8633614 8633708 7.950000e-24 122.0
47 TraesCS7D01G018000 chr7A 88.406 69 3 3 100 168 673004876 673004813 1.750000e-10 78.7
48 TraesCS7D01G018000 chr7A 76.923 117 24 3 848 962 8634138 8634253 4.890000e-06 63.9
49 TraesCS7D01G018000 chr5B 81.994 983 163 12 3021 3996 37483366 37484341 0.000000e+00 822.0
50 TraesCS7D01G018000 chr5B 82.709 908 141 9 3022 3916 37411994 37412898 0.000000e+00 793.0
51 TraesCS7D01G018000 chr5B 81.270 315 49 9 3027 3337 37592068 37592376 4.520000e-61 246.0
52 TraesCS7D01G018000 chr5B 82.632 190 16 10 5652 5837 492713499 492713323 1.010000e-32 152.0
53 TraesCS7D01G018000 chr5B 88.034 117 14 0 1008 1124 105541548 105541664 7.890000e-29 139.0
54 TraesCS7D01G018000 chr5B 100.000 28 0 0 98 125 671717048 671717075 1.100000e-02 52.8
55 TraesCS7D01G018000 chr5D 92.340 235 17 1 245 479 418945960 418946193 3.370000e-87 333.0
56 TraesCS7D01G018000 chr5D 87.603 121 14 1 1004 1124 405882762 405882881 7.890000e-29 139.0
57 TraesCS7D01G018000 chr5D 87.273 55 5 2 96 150 407984197 407984249 1.760000e-05 62.1
58 TraesCS7D01G018000 chr1B 89.394 264 23 5 224 485 430158111 430157851 1.570000e-85 327.0
59 TraesCS7D01G018000 chr1B 94.286 35 2 0 90 124 187714275 187714309 3.000000e-03 54.7
60 TraesCS7D01G018000 chr1D 89.494 257 26 1 224 479 276797588 276797332 2.030000e-84 324.0
61 TraesCS7D01G018000 chr1D 96.875 32 1 0 146 177 50709198 50709167 3.000000e-03 54.7
62 TraesCS7D01G018000 chr2B 89.535 258 22 5 225 479 465132928 465133183 7.300000e-84 322.0
63 TraesCS7D01G018000 chr2B 83.957 187 13 5 5652 5834 2491609 2491782 4.680000e-36 163.0
64 TraesCS7D01G018000 chr6B 88.716 257 28 1 224 479 81010767 81010511 4.390000e-81 313.0
65 TraesCS7D01G018000 chr6B 87.500 120 15 0 1005 1124 718319711 718319830 7.890000e-29 139.0
66 TraesCS7D01G018000 chr6B 97.436 39 0 1 130 168 700651637 700651674 1.360000e-06 65.8
67 TraesCS7D01G018000 chr4B 87.500 256 31 1 224 478 357958310 357958055 1.590000e-75 294.0
68 TraesCS7D01G018000 chr4B 85.385 130 19 0 997 1126 527282508 527282637 1.020000e-27 135.0
69 TraesCS7D01G018000 chr4B 89.583 48 4 1 126 172 216760378 216760331 6.320000e-05 60.2
70 TraesCS7D01G018000 chr6D 87.209 258 31 2 221 476 117361888 117362145 5.720000e-75 292.0
71 TraesCS7D01G018000 chr2D 89.831 118 12 0 1008 1125 618286067 618286184 1.010000e-32 152.0
72 TraesCS7D01G018000 chr2D 97.500 40 0 1 130 168 170085099 170085138 3.780000e-07 67.6
73 TraesCS7D01G018000 chr4D 88.618 123 14 0 1002 1124 327425673 327425795 3.650000e-32 150.0
74 TraesCS7D01G018000 chr4D 91.892 37 3 0 92 128 35382170 35382206 1.100000e-02 52.8
75 TraesCS7D01G018000 chr7B 87.805 123 15 0 1006 1128 119891111 119891233 1.700000e-30 145.0
76 TraesCS7D01G018000 chr7B 100.000 30 0 0 98 127 66196618 66196647 8.180000e-04 56.5
77 TraesCS7D01G018000 chr2A 88.333 120 12 2 1007 1125 628576233 628576351 6.100000e-30 143.0
78 TraesCS7D01G018000 chr6A 82.716 81 11 3 101 178 609398491 609398411 1.050000e-07 69.4
79 TraesCS7D01G018000 chr3A 94.872 39 2 0 130 168 37505976 37505938 1.760000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G018000 chr7D 8029422 8035262 5840 False 10787.00 10787 100.000000 1 5841 1 chr7D.!!$F11 5840
1 TraesCS7D01G018000 chr7D 7548287 7551885 3598 False 3094.00 3094 82.332000 1121 4717 1 chr7D.!!$F1 3596
2 TraesCS7D01G018000 chr7D 8085336 8088994 3658 False 2953.00 2953 81.457000 1255 4933 1 chr7D.!!$F14 3678
3 TraesCS7D01G018000 chr7D 7924312 7927110 2798 False 2712.00 2712 84.266000 1191 4009 1 chr7D.!!$F10 2818
4 TraesCS7D01G018000 chr7D 7560976 7563758 2782 False 2682.00 2682 84.164000 1123 3913 1 chr7D.!!$F2 2790
5 TraesCS7D01G018000 chr7D 8052745 8055439 2694 False 2625.00 2625 84.471000 1170 3854 1 chr7D.!!$F12 2684
6 TraesCS7D01G018000 chr7D 8251157 8256070 4913 True 1818.50 3406 87.282500 1191 5624 2 chr7D.!!$R1 4433
7 TraesCS7D01G018000 chr7D 8233447 8235201 1754 False 1674.00 1674 83.953000 1197 2963 1 chr7D.!!$F17 1766
8 TraesCS7D01G018000 chr7D 7607902 7609608 1706 False 1626.00 1626 83.958000 3022 4719 1 chr7D.!!$F5 1697
9 TraesCS7D01G018000 chr7D 7749902 7752875 2973 False 1529.00 1949 85.105500 1121 4146 2 chr7D.!!$F20 3025
10 TraesCS7D01G018000 chr7D 7714335 7716240 1905 False 1496.00 1496 81.133000 3022 4914 1 chr7D.!!$F8 1892
11 TraesCS7D01G018000 chr7D 8178781 8180502 1721 False 1380.00 1380 81.424000 3022 4720 1 chr7D.!!$F15 1698
12 TraesCS7D01G018000 chr7D 7822110 7823956 1846 False 1149.00 1149 78.176000 3018 4899 1 chr7D.!!$F9 1881
13 TraesCS7D01G018000 chr4A 731771564 731774385 2821 True 2606.00 2606 83.439000 1183 4009 1 chr4A.!!$R2 2826
14 TraesCS7D01G018000 chr4A 731613353 731616960 3607 True 1805.15 3539 86.258000 945 4719 2 chr4A.!!$R4 3774
15 TraesCS7D01G018000 chr4A 732376954 732382466 5512 False 1727.68 6759 94.315400 1 5841 5 chr4A.!!$F3 5840
16 TraesCS7D01G018000 chr4A 732356560 732358543 1983 False 1317.00 1317 78.997000 3023 5002 1 chr4A.!!$F2 1979
17 TraesCS7D01G018000 chr4A 731858127 731862465 4338 True 1202.40 3343 87.022333 170 4891 3 chr4A.!!$R6 4721
18 TraesCS7D01G018000 chr4A 731757348 731761352 4004 True 949.25 1805 86.849000 1121 5835 2 chr4A.!!$R5 4714
19 TraesCS7D01G018000 chr3B 741463069 741466685 3616 False 3326.00 3326 83.443000 1121 4724 1 chr3B.!!$F2 3603
20 TraesCS7D01G018000 chr7A 8653635 8655487 1852 False 1858.00 1858 84.914000 1124 2962 1 chr7A.!!$F1 1838
21 TraesCS7D01G018000 chr7A 8689518 8695097 5579 True 1763.00 3247 85.346000 1191 5627 2 chr7A.!!$R2 4436
22 TraesCS7D01G018000 chr5B 37483366 37484341 975 False 822.00 822 81.994000 3021 3996 1 chr5B.!!$F2 975
23 TraesCS7D01G018000 chr5B 37411994 37412898 904 False 793.00 793 82.709000 3022 3916 1 chr5B.!!$F1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 799 0.606401 ATCCTCCAACAACCGCACAG 60.606 55.000 0.00 0.0 0.00 3.66 F
1023 1091 0.702902 AAGTACTCCCTCAGTCCGGA 59.297 55.000 0.00 0.0 36.43 5.14 F
1605 1679 0.249155 GCAAGGTACGCGGCTACATA 60.249 55.000 12.47 0.0 0.00 2.29 F
2158 2236 0.984230 GAGGAAGTGGGTGGATGTCA 59.016 55.000 0.00 0.0 0.00 3.58 F
3821 4022 2.435059 GGAAGCTGGAGGACGCAC 60.435 66.667 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1679 1.006571 CAGTGGACTACGGTGCGTT 60.007 57.895 0.0 0.0 41.54 4.84 R
2983 3160 3.263425 TCCTCTTCTGACCCATTAACCAC 59.737 47.826 0.0 0.0 0.00 4.16 R
2984 3161 3.526899 TCCTCTTCTGACCCATTAACCA 58.473 45.455 0.0 0.0 0.00 3.67 R
3930 4131 0.804989 CTTCAAGCATGGGGAACGTC 59.195 55.000 0.0 0.0 0.00 4.34 R
5644 7415 0.044092 TAGATGGTCAGGCAGGGGAA 59.956 55.000 0.0 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 55 6.817765 ATGAAACTGATCAATTACCACGTT 57.182 33.333 0.00 0.00 32.06 3.99
61 63 4.539509 TCAATTACCACGTTTGTGTGTC 57.460 40.909 0.00 0.00 44.92 3.67
124 126 3.386063 TCCCTCCGTCCCATAATGTAAA 58.614 45.455 0.00 0.00 0.00 2.01
125 127 3.781407 TCCCTCCGTCCCATAATGTAAAA 59.219 43.478 0.00 0.00 0.00 1.52
127 129 4.519213 CCTCCGTCCCATAATGTAAAACA 58.481 43.478 0.00 0.00 0.00 2.83
200 218 1.814394 CTTGCTTATTCCTGCTGCACA 59.186 47.619 0.00 0.00 33.13 4.57
229 247 4.148825 CGGGTGCTCTTCCTCCGG 62.149 72.222 0.00 0.00 37.35 5.14
296 314 7.283625 TGCAAAGTTTGACCAAGTGTATATT 57.716 32.000 19.82 0.00 0.00 1.28
396 414 5.313520 TGGCATTGTGAATGTTGATACTG 57.686 39.130 0.00 0.00 41.01 2.74
454 472 6.595326 TGACTTTGGACAGAACTTATATGCAG 59.405 38.462 0.00 0.00 0.00 4.41
510 528 1.609783 CAGGCCTAGGGGGTTGAAG 59.390 63.158 3.98 0.00 37.43 3.02
550 568 5.238650 TCATCTGTGATGACGATACGTACAT 59.761 40.000 0.00 0.00 41.37 2.29
737 799 0.606401 ATCCTCCAACAACCGCACAG 60.606 55.000 0.00 0.00 0.00 3.66
766 829 2.279136 GCGCGCCTTGATATTATCTACG 59.721 50.000 23.24 5.02 0.00 3.51
771 834 5.176958 GCGCCTTGATATTATCTACGTTTGT 59.823 40.000 0.00 0.00 0.00 2.83
932 1000 5.728637 TGCTCTGACTTGTCTTGATCTTA 57.271 39.130 2.35 0.00 0.00 2.10
934 1002 6.336566 TGCTCTGACTTGTCTTGATCTTATC 58.663 40.000 2.35 0.00 0.00 1.75
937 1005 4.433615 TGACTTGTCTTGATCTTATCCGC 58.566 43.478 2.35 0.00 0.00 5.54
948 1016 7.554118 TCTTGATCTTATCCGCTTTTTCTTCAT 59.446 33.333 0.00 0.00 0.00 2.57
1012 1080 9.498176 TTGTGGAACTAAGAAATAAAGTACTCC 57.502 33.333 0.00 0.00 38.04 3.85
1013 1081 8.098912 TGTGGAACTAAGAAATAAAGTACTCCC 58.901 37.037 0.00 0.00 38.04 4.30
1014 1082 8.319881 GTGGAACTAAGAAATAAAGTACTCCCT 58.680 37.037 0.00 0.00 0.00 4.20
1015 1083 8.537858 TGGAACTAAGAAATAAAGTACTCCCTC 58.462 37.037 0.00 0.00 0.00 4.30
1016 1084 8.537858 GGAACTAAGAAATAAAGTACTCCCTCA 58.462 37.037 0.00 0.00 0.00 3.86
1017 1085 9.589111 GAACTAAGAAATAAAGTACTCCCTCAG 57.411 37.037 0.00 0.00 0.00 3.35
1018 1086 8.667592 ACTAAGAAATAAAGTACTCCCTCAGT 57.332 34.615 0.00 0.00 39.41 3.41
1019 1087 8.751242 ACTAAGAAATAAAGTACTCCCTCAGTC 58.249 37.037 0.00 0.00 36.43 3.51
1020 1088 6.547930 AGAAATAAAGTACTCCCTCAGTCC 57.452 41.667 0.00 0.00 36.43 3.85
1021 1089 5.127356 AGAAATAAAGTACTCCCTCAGTCCG 59.873 44.000 0.00 0.00 36.43 4.79
1022 1090 1.558233 AAAGTACTCCCTCAGTCCGG 58.442 55.000 0.00 0.00 36.43 5.14
1023 1091 0.702902 AAGTACTCCCTCAGTCCGGA 59.297 55.000 0.00 0.00 36.43 5.14
1024 1092 0.702902 AGTACTCCCTCAGTCCGGAA 59.297 55.000 5.23 0.00 36.43 4.30
1025 1093 1.288335 AGTACTCCCTCAGTCCGGAAT 59.712 52.381 5.23 0.00 36.43 3.01
1026 1094 2.108970 GTACTCCCTCAGTCCGGAATT 58.891 52.381 5.23 0.00 36.43 2.17
1027 1095 2.544844 ACTCCCTCAGTCCGGAATTA 57.455 50.000 5.23 0.00 0.00 1.40
1028 1096 2.108970 ACTCCCTCAGTCCGGAATTAC 58.891 52.381 5.23 0.00 0.00 1.89
1029 1097 2.292323 ACTCCCTCAGTCCGGAATTACT 60.292 50.000 5.23 0.00 0.00 2.24
1030 1098 2.362717 CTCCCTCAGTCCGGAATTACTC 59.637 54.545 5.23 0.00 0.00 2.59
1031 1099 1.067212 CCCTCAGTCCGGAATTACTCG 59.933 57.143 5.23 0.00 0.00 4.18
1032 1100 1.749634 CCTCAGTCCGGAATTACTCGT 59.250 52.381 5.23 0.00 0.00 4.18
1033 1101 2.223525 CCTCAGTCCGGAATTACTCGTC 60.224 54.545 5.23 0.00 0.00 4.20
1034 1102 2.683867 CTCAGTCCGGAATTACTCGTCT 59.316 50.000 5.23 0.00 0.00 4.18
1035 1103 2.422479 TCAGTCCGGAATTACTCGTCTG 59.578 50.000 5.23 6.12 0.00 3.51
1036 1104 2.422479 CAGTCCGGAATTACTCGTCTGA 59.578 50.000 5.23 0.00 32.61 3.27
1038 1106 2.681848 GTCCGGAATTACTCGTCTGAGA 59.318 50.000 5.23 0.00 45.57 3.27
1039 1107 3.128242 GTCCGGAATTACTCGTCTGAGAA 59.872 47.826 5.23 0.00 45.57 2.87
1040 1108 3.760151 TCCGGAATTACTCGTCTGAGAAA 59.240 43.478 0.00 0.00 45.57 2.52
1041 1109 4.401519 TCCGGAATTACTCGTCTGAGAAAT 59.598 41.667 0.00 0.00 45.57 2.17
1042 1110 4.504461 CCGGAATTACTCGTCTGAGAAATG 59.496 45.833 0.00 0.00 45.57 2.32
1043 1111 5.340803 CGGAATTACTCGTCTGAGAAATGA 58.659 41.667 0.00 0.00 45.57 2.57
1044 1112 5.805486 CGGAATTACTCGTCTGAGAAATGAA 59.195 40.000 0.00 0.00 45.57 2.57
1045 1113 6.237595 CGGAATTACTCGTCTGAGAAATGAAC 60.238 42.308 0.00 0.00 45.57 3.18
1046 1114 6.590292 GGAATTACTCGTCTGAGAAATGAACA 59.410 38.462 0.00 0.00 45.57 3.18
1047 1115 7.117812 GGAATTACTCGTCTGAGAAATGAACAA 59.882 37.037 0.00 0.00 45.57 2.83
1048 1116 7.962964 ATTACTCGTCTGAGAAATGAACAAA 57.037 32.000 0.00 0.00 45.57 2.83
1049 1117 7.780008 TTACTCGTCTGAGAAATGAACAAAA 57.220 32.000 0.00 0.00 45.57 2.44
1050 1118 6.677781 ACTCGTCTGAGAAATGAACAAAAA 57.322 33.333 0.00 0.00 45.57 1.94
1051 1119 7.264373 ACTCGTCTGAGAAATGAACAAAAAT 57.736 32.000 0.00 0.00 45.57 1.82
1052 1120 7.134815 ACTCGTCTGAGAAATGAACAAAAATG 58.865 34.615 0.00 0.00 45.57 2.32
1053 1121 7.012327 ACTCGTCTGAGAAATGAACAAAAATGA 59.988 33.333 0.00 0.00 45.57 2.57
1054 1122 7.702386 TCGTCTGAGAAATGAACAAAAATGAA 58.298 30.769 0.00 0.00 0.00 2.57
1055 1123 8.352201 TCGTCTGAGAAATGAACAAAAATGAAT 58.648 29.630 0.00 0.00 0.00 2.57
1056 1124 8.422457 CGTCTGAGAAATGAACAAAAATGAATG 58.578 33.333 0.00 0.00 0.00 2.67
1057 1125 9.252962 GTCTGAGAAATGAACAAAAATGAATGT 57.747 29.630 0.00 0.00 0.00 2.71
1097 1165 7.451731 AAGTTTAGATACATCCATTCCTCCA 57.548 36.000 0.00 0.00 0.00 3.86
1098 1166 7.451731 AGTTTAGATACATCCATTCCTCCAA 57.548 36.000 0.00 0.00 0.00 3.53
1099 1167 7.283329 AGTTTAGATACATCCATTCCTCCAAC 58.717 38.462 0.00 0.00 0.00 3.77
1100 1168 6.823286 TTAGATACATCCATTCCTCCAACA 57.177 37.500 0.00 0.00 0.00 3.33
1101 1169 5.715439 AGATACATCCATTCCTCCAACAA 57.285 39.130 0.00 0.00 0.00 2.83
1102 1170 5.688807 AGATACATCCATTCCTCCAACAAG 58.311 41.667 0.00 0.00 0.00 3.16
1103 1171 3.814504 ACATCCATTCCTCCAACAAGT 57.185 42.857 0.00 0.00 0.00 3.16
1104 1172 4.927267 ACATCCATTCCTCCAACAAGTA 57.073 40.909 0.00 0.00 0.00 2.24
1105 1173 5.456921 ACATCCATTCCTCCAACAAGTAT 57.543 39.130 0.00 0.00 0.00 2.12
1106 1174 5.831103 ACATCCATTCCTCCAACAAGTATT 58.169 37.500 0.00 0.00 0.00 1.89
1107 1175 6.256053 ACATCCATTCCTCCAACAAGTATTT 58.744 36.000 0.00 0.00 0.00 1.40
1108 1176 6.378280 ACATCCATTCCTCCAACAAGTATTTC 59.622 38.462 0.00 0.00 0.00 2.17
1109 1177 5.261216 TCCATTCCTCCAACAAGTATTTCC 58.739 41.667 0.00 0.00 0.00 3.13
1110 1178 4.096382 CCATTCCTCCAACAAGTATTTCCG 59.904 45.833 0.00 0.00 0.00 4.30
1111 1179 3.343941 TCCTCCAACAAGTATTTCCGG 57.656 47.619 0.00 0.00 0.00 5.14
1112 1180 2.907696 TCCTCCAACAAGTATTTCCGGA 59.092 45.455 0.00 0.00 0.00 5.14
1113 1181 3.007635 CCTCCAACAAGTATTTCCGGAC 58.992 50.000 1.83 0.00 0.00 4.79
1114 1182 2.671396 CTCCAACAAGTATTTCCGGACG 59.329 50.000 1.83 0.00 0.00 4.79
1115 1183 1.735571 CCAACAAGTATTTCCGGACGG 59.264 52.381 1.83 3.96 0.00 4.79
1116 1184 2.613474 CCAACAAGTATTTCCGGACGGA 60.613 50.000 1.83 9.76 43.52 4.69
1117 1185 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
1118 1186 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1119 1187 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1154 1223 4.383880 GGAGGATTACAAGGAGGTAACCAC 60.384 50.000 0.00 0.00 36.17 4.16
1213 1282 6.353082 CCATAGGAGGATTACAAGGTTGTTCT 60.353 42.308 0.00 0.00 42.35 3.01
1605 1679 0.249155 GCAAGGTACGCGGCTACATA 60.249 55.000 12.47 0.00 0.00 2.29
1614 1688 1.517694 CGGCTACATAACGCACCGT 60.518 57.895 0.00 0.00 43.97 4.83
1924 2001 8.029522 CGACTCTTGCTAAGATGGCTTATAATA 58.970 37.037 0.00 0.00 36.10 0.98
2158 2236 0.984230 GAGGAAGTGGGTGGATGTCA 59.016 55.000 0.00 0.00 0.00 3.58
2281 2359 8.453320 CACATAAGTTAGCATGTCTGAATGAAA 58.547 33.333 0.00 0.00 33.12 2.69
2419 2506 3.074390 TCTCAAGACAATGGGTGGATTGT 59.926 43.478 0.00 0.00 46.89 2.71
2610 2697 4.268797 TGAGATGCAGAAGGATATGCTC 57.731 45.455 0.00 0.00 42.98 4.26
2801 2912 4.271049 GCACGACTTAATGCATGATGTAGT 59.729 41.667 0.00 4.92 41.65 2.73
2963 3131 3.372206 CGCACTTTGTTAGATCCTTCAGG 59.628 47.826 0.00 0.00 0.00 3.86
2993 3170 6.522625 TGTGGAACATTATGTGGTTAATGG 57.477 37.500 0.00 0.00 45.67 3.16
2994 3171 5.420421 TGTGGAACATTATGTGGTTAATGGG 59.580 40.000 0.00 0.00 45.67 4.00
2995 3172 5.420739 GTGGAACATTATGTGGTTAATGGGT 59.579 40.000 0.00 0.00 44.52 4.51
2996 3173 5.654650 TGGAACATTATGTGGTTAATGGGTC 59.345 40.000 0.00 5.75 41.71 4.46
2997 3174 5.654650 GGAACATTATGTGGTTAATGGGTCA 59.345 40.000 0.00 0.00 41.71 4.02
2998 3175 6.183360 GGAACATTATGTGGTTAATGGGTCAG 60.183 42.308 0.00 0.00 41.71 3.51
2999 3176 6.073447 ACATTATGTGGTTAATGGGTCAGA 57.927 37.500 0.00 0.00 41.71 3.27
3000 3177 6.489603 ACATTATGTGGTTAATGGGTCAGAA 58.510 36.000 0.00 0.00 41.71 3.02
3001 3178 6.603201 ACATTATGTGGTTAATGGGTCAGAAG 59.397 38.462 0.00 0.00 41.71 2.85
3002 3179 4.927267 ATGTGGTTAATGGGTCAGAAGA 57.073 40.909 0.00 0.00 0.00 2.87
3003 3180 4.286297 TGTGGTTAATGGGTCAGAAGAG 57.714 45.455 0.00 0.00 0.00 2.85
3004 3181 3.009033 TGTGGTTAATGGGTCAGAAGAGG 59.991 47.826 0.00 0.00 0.00 3.69
3005 3182 3.263425 GTGGTTAATGGGTCAGAAGAGGA 59.737 47.826 0.00 0.00 0.00 3.71
3006 3183 4.080299 GTGGTTAATGGGTCAGAAGAGGAT 60.080 45.833 0.00 0.00 0.00 3.24
3007 3184 5.130477 GTGGTTAATGGGTCAGAAGAGGATA 59.870 44.000 0.00 0.00 0.00 2.59
3008 3185 5.911178 TGGTTAATGGGTCAGAAGAGGATAT 59.089 40.000 0.00 0.00 0.00 1.63
3009 3186 7.016268 GTGGTTAATGGGTCAGAAGAGGATATA 59.984 40.741 0.00 0.00 0.00 0.86
3010 3187 7.739444 TGGTTAATGGGTCAGAAGAGGATATAT 59.261 37.037 0.00 0.00 0.00 0.86
3011 3188 8.261522 GGTTAATGGGTCAGAAGAGGATATATC 58.738 40.741 3.96 3.96 0.00 1.63
3192 3372 6.128035 TGCCTGATTCAATATGTGTGTTGTAC 60.128 38.462 0.00 0.00 0.00 2.90
3489 3671 2.964464 TGCAAAAGAGGCCAATCTCAAA 59.036 40.909 5.01 0.00 36.30 2.69
3595 3789 9.653287 TTCAGTGTTTAGAACCTCATAGTAATG 57.347 33.333 0.00 0.00 0.00 1.90
3685 3879 8.308207 AGATGTTTAACTACTTGAGAGAACTCC 58.692 37.037 0.00 0.00 41.99 3.85
3686 3880 7.598759 TGTTTAACTACTTGAGAGAACTCCT 57.401 36.000 0.00 0.00 41.99 3.69
3699 3893 7.509546 TGAGAGAACTCCTAATTTTTGACTGT 58.490 34.615 0.00 0.00 41.99 3.55
3709 3903 3.624326 TTTTTGACTGTCCAAGATGCG 57.376 42.857 5.17 0.00 0.00 4.73
3736 3930 6.005198 AGTATACCTGTAGTATGGCTCTCAC 58.995 44.000 0.00 0.00 41.89 3.51
3757 3951 5.129485 TCACTATCTCTGGAGATTTTGTCCC 59.871 44.000 16.79 0.00 45.31 4.46
3821 4022 2.435059 GGAAGCTGGAGGACGCAC 60.435 66.667 0.00 0.00 0.00 5.34
3930 4131 2.697751 AGAGCCTAGTGATAGCTTGGTG 59.302 50.000 0.00 0.00 36.87 4.17
4034 4235 2.364324 TGACAGTAGTTGGAGTCCACAC 59.636 50.000 12.69 13.23 30.78 3.82
4037 4238 4.220724 ACAGTAGTTGGAGTCCACACTAA 58.779 43.478 24.04 6.18 32.98 2.24
4040 4241 6.668283 ACAGTAGTTGGAGTCCACACTAATAT 59.332 38.462 24.04 15.92 32.98 1.28
4161 4365 0.971386 CCCAGCAAAGCCAAAGTCAT 59.029 50.000 0.00 0.00 0.00 3.06
4165 4369 3.507233 CCAGCAAAGCCAAAGTCATAGAA 59.493 43.478 0.00 0.00 0.00 2.10
4384 4588 6.072112 TCAGAAATTGTGACAACCTAAAGC 57.928 37.500 0.00 0.00 0.00 3.51
4533 4737 2.371841 TGTGATTGGCTGTAGTGACCTT 59.628 45.455 0.00 0.00 0.00 3.50
4567 4771 1.377725 GGGATGTGTGGCCTCACTG 60.378 63.158 31.79 0.00 43.94 3.66
4570 4774 0.250234 GATGTGTGGCCTCACTGCTA 59.750 55.000 31.79 16.76 43.94 3.49
5023 5423 4.828925 GGTCCTCGCTGCCAGAGC 62.829 72.222 0.00 0.00 45.20 4.09
5171 6571 5.470845 GCTCGTTGCTTTAATCTGTACAT 57.529 39.130 0.00 0.00 38.95 2.29
5250 6962 5.048852 AGAGCAAAGAATTTCTCTTCAGCAC 60.049 40.000 0.00 7.47 44.00 4.40
5278 6994 4.313282 CAATGCCGTACTGATGATGAGAT 58.687 43.478 0.00 0.00 0.00 2.75
5281 6997 2.478134 GCCGTACTGATGATGAGATTGC 59.522 50.000 0.00 0.00 0.00 3.56
5286 7002 5.979517 CGTACTGATGATGAGATTGCTACAA 59.020 40.000 0.00 0.00 0.00 2.41
5287 7003 6.476706 CGTACTGATGATGAGATTGCTACAAA 59.523 38.462 0.00 0.00 0.00 2.83
5288 7004 6.674694 ACTGATGATGAGATTGCTACAAAC 57.325 37.500 0.00 0.00 0.00 2.93
5297 7013 2.279935 TTGCTACAAACAATCCCCGT 57.720 45.000 0.00 0.00 0.00 5.28
5304 7041 3.958018 ACAAACAATCCCCGTAGCAATA 58.042 40.909 0.00 0.00 0.00 1.90
5311 7048 3.746045 TCCCCGTAGCAATAATCTGAC 57.254 47.619 0.00 0.00 0.00 3.51
5317 7054 3.731216 CGTAGCAATAATCTGACCTCGTG 59.269 47.826 0.00 0.00 0.00 4.35
5318 7055 3.895232 AGCAATAATCTGACCTCGTGT 57.105 42.857 0.00 0.00 0.00 4.49
5319 7056 3.786635 AGCAATAATCTGACCTCGTGTC 58.213 45.455 1.64 1.64 44.72 3.67
5320 7057 3.449018 AGCAATAATCTGACCTCGTGTCT 59.551 43.478 8.80 0.00 44.75 3.41
5324 7061 1.608717 ATCTGACCTCGTGTCTGCCC 61.609 60.000 8.80 0.00 44.75 5.36
5325 7062 3.302347 CTGACCTCGTGTCTGCCCC 62.302 68.421 8.80 0.00 44.75 5.80
5326 7063 4.436998 GACCTCGTGTCTGCCCCG 62.437 72.222 1.43 0.00 41.03 5.73
5347 7084 4.033776 CCGCCTTTGGGAGCCTGA 62.034 66.667 0.00 0.00 33.58 3.86
5348 7085 2.747855 CGCCTTTGGGAGCCTGAC 60.748 66.667 0.00 0.00 33.58 3.51
5349 7086 2.436109 GCCTTTGGGAGCCTGACA 59.564 61.111 0.00 0.00 33.58 3.58
5350 7087 1.000396 GCCTTTGGGAGCCTGACAT 60.000 57.895 0.00 0.00 33.58 3.06
5351 7088 1.318158 GCCTTTGGGAGCCTGACATG 61.318 60.000 0.00 0.00 33.58 3.21
5352 7089 0.329261 CCTTTGGGAGCCTGACATGA 59.671 55.000 0.00 0.00 33.58 3.07
5353 7090 1.272092 CCTTTGGGAGCCTGACATGAA 60.272 52.381 0.00 0.00 33.58 2.57
5354 7091 2.089980 CTTTGGGAGCCTGACATGAAG 58.910 52.381 0.00 0.00 0.00 3.02
5355 7092 1.067295 TTGGGAGCCTGACATGAAGT 58.933 50.000 0.00 0.00 0.00 3.01
5356 7093 1.067295 TGGGAGCCTGACATGAAGTT 58.933 50.000 0.00 0.00 0.00 2.66
5357 7094 1.425066 TGGGAGCCTGACATGAAGTTT 59.575 47.619 0.00 0.00 0.00 2.66
5358 7095 2.087646 GGGAGCCTGACATGAAGTTTC 58.912 52.381 0.00 0.00 0.00 2.78
5359 7096 2.087646 GGAGCCTGACATGAAGTTTCC 58.912 52.381 0.00 2.57 0.00 3.13
5360 7097 2.290577 GGAGCCTGACATGAAGTTTCCT 60.291 50.000 0.00 0.00 0.00 3.36
5361 7098 3.055094 GGAGCCTGACATGAAGTTTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
5362 7099 3.935828 GAGCCTGACATGAAGTTTCCTAC 59.064 47.826 0.00 0.00 0.00 3.18
5363 7100 3.584848 AGCCTGACATGAAGTTTCCTACT 59.415 43.478 0.00 0.00 39.32 2.57
5364 7101 4.777896 AGCCTGACATGAAGTTTCCTACTA 59.222 41.667 0.00 0.00 35.54 1.82
5365 7102 4.870991 GCCTGACATGAAGTTTCCTACTAC 59.129 45.833 0.00 0.00 35.54 2.73
5366 7103 5.337652 GCCTGACATGAAGTTTCCTACTACT 60.338 44.000 0.00 0.00 35.54 2.57
5367 7104 6.127423 GCCTGACATGAAGTTTCCTACTACTA 60.127 42.308 0.00 0.00 35.54 1.82
5368 7105 7.259161 CCTGACATGAAGTTTCCTACTACTAC 58.741 42.308 0.00 0.00 35.54 2.73
5369 7106 7.122948 CCTGACATGAAGTTTCCTACTACTACT 59.877 40.741 0.00 0.00 35.54 2.57
5370 7107 7.827701 TGACATGAAGTTTCCTACTACTACTG 58.172 38.462 0.00 0.00 35.54 2.74
5371 7108 6.631962 ACATGAAGTTTCCTACTACTACTGC 58.368 40.000 0.00 0.00 35.54 4.40
5372 7109 6.437793 ACATGAAGTTTCCTACTACTACTGCT 59.562 38.462 0.00 0.00 35.54 4.24
5373 7110 7.614583 ACATGAAGTTTCCTACTACTACTGCTA 59.385 37.037 0.00 0.00 35.54 3.49
5374 7111 7.388460 TGAAGTTTCCTACTACTACTGCTAC 57.612 40.000 0.00 0.00 35.54 3.58
5375 7112 7.173722 TGAAGTTTCCTACTACTACTGCTACT 58.826 38.462 0.00 0.00 35.54 2.57
5376 7113 8.324306 TGAAGTTTCCTACTACTACTGCTACTA 58.676 37.037 0.00 0.00 35.54 1.82
5377 7114 8.504812 AAGTTTCCTACTACTACTGCTACTAC 57.495 38.462 0.00 0.00 35.54 2.73
5378 7115 7.628234 AGTTTCCTACTACTACTGCTACTACA 58.372 38.462 0.00 0.00 34.56 2.74
5379 7116 7.769970 AGTTTCCTACTACTACTGCTACTACAG 59.230 40.741 0.00 0.00 38.34 2.74
5382 7119 6.382282 TCCTACTACTACTGCTACTACAGACA 59.618 42.308 0.00 0.00 40.25 3.41
5384 7121 6.988622 ACTACTACTGCTACTACAGACAAG 57.011 41.667 0.00 0.00 40.25 3.16
5389 7126 3.574396 ACTGCTACTACAGACAAGAGCAA 59.426 43.478 0.00 0.00 39.29 3.91
5392 7129 5.551233 TGCTACTACAGACAAGAGCAAATT 58.449 37.500 0.00 0.00 37.01 1.82
5399 7136 8.725148 ACTACAGACAAGAGCAAATTTATTCAG 58.275 33.333 0.00 0.00 0.00 3.02
5402 7139 6.527023 CAGACAAGAGCAAATTTATTCAGCTG 59.473 38.462 7.63 7.63 33.20 4.24
5408 7145 6.208204 AGAGCAAATTTATTCAGCTGTTGTCT 59.792 34.615 14.67 9.90 33.20 3.41
5438 7180 4.639078 TCATCACCAATCAACTCTTCCA 57.361 40.909 0.00 0.00 0.00 3.53
5439 7181 4.582869 TCATCACCAATCAACTCTTCCAG 58.417 43.478 0.00 0.00 0.00 3.86
5487 7258 2.368548 AGGCACACACACTGACTGATTA 59.631 45.455 0.00 0.00 0.00 1.75
5500 7271 7.094075 ACACTGACTGATTACGTACTGGATTAA 60.094 37.037 0.00 0.00 0.00 1.40
5510 7281 6.090483 ACGTACTGGATTAATCATCAGAGG 57.910 41.667 21.54 14.68 32.79 3.69
5511 7282 5.833667 ACGTACTGGATTAATCATCAGAGGA 59.166 40.000 21.54 8.93 32.79 3.71
5546 7317 3.267860 GCGAGCATCTTGCCGAGG 61.268 66.667 12.38 0.00 46.52 4.63
5614 7385 2.434331 CCCCATGGTGTCCACGTT 59.566 61.111 11.73 0.00 35.80 3.99
5628 7399 2.251642 ACGTTCTTGAGGTTGCCGC 61.252 57.895 0.00 0.00 0.00 6.53
5629 7400 2.250939 CGTTCTTGAGGTTGCCGCA 61.251 57.895 0.00 0.00 0.00 5.69
5630 7401 1.282875 GTTCTTGAGGTTGCCGCAC 59.717 57.895 0.00 0.00 32.04 5.34
5631 7402 1.896660 TTCTTGAGGTTGCCGCACC 60.897 57.895 0.00 0.00 32.04 5.01
5638 7409 4.681978 GTTGCCGCACCTCCGTCT 62.682 66.667 0.00 0.00 0.00 4.18
5639 7410 4.680237 TTGCCGCACCTCCGTCTG 62.680 66.667 0.00 0.00 0.00 3.51
5644 7415 4.008933 GCACCTCCGTCTGCCACT 62.009 66.667 0.00 0.00 0.00 4.00
5645 7416 2.743718 CACCTCCGTCTGCCACTT 59.256 61.111 0.00 0.00 0.00 3.16
5646 7417 1.374758 CACCTCCGTCTGCCACTTC 60.375 63.158 0.00 0.00 0.00 3.01
5647 7418 2.266055 CCTCCGTCTGCCACTTCC 59.734 66.667 0.00 0.00 0.00 3.46
5648 7419 2.266055 CTCCGTCTGCCACTTCCC 59.734 66.667 0.00 0.00 0.00 3.97
5649 7420 3.316573 CTCCGTCTGCCACTTCCCC 62.317 68.421 0.00 0.00 0.00 4.81
5650 7421 3.322466 CCGTCTGCCACTTCCCCT 61.322 66.667 0.00 0.00 0.00 4.79
5651 7422 2.046892 CGTCTGCCACTTCCCCTG 60.047 66.667 0.00 0.00 0.00 4.45
5652 7423 2.360475 GTCTGCCACTTCCCCTGC 60.360 66.667 0.00 0.00 0.00 4.85
5653 7424 3.650950 TCTGCCACTTCCCCTGCC 61.651 66.667 0.00 0.00 0.00 4.85
5654 7425 3.655211 CTGCCACTTCCCCTGCCT 61.655 66.667 0.00 0.00 0.00 4.75
5655 7426 3.933048 CTGCCACTTCCCCTGCCTG 62.933 68.421 0.00 0.00 0.00 4.85
5656 7427 3.650950 GCCACTTCCCCTGCCTGA 61.651 66.667 0.00 0.00 0.00 3.86
5657 7428 2.352805 CCACTTCCCCTGCCTGAC 59.647 66.667 0.00 0.00 0.00 3.51
5667 7438 1.489481 CCTGCCTGACCATCTACTGA 58.511 55.000 0.00 0.00 0.00 3.41
5707 7479 5.111293 CCACACTTCTTGCTTGTTCAAATT 58.889 37.500 0.00 0.00 0.00 1.82
5720 7492 7.014711 TGCTTGTTCAAATTTGGTTGGAGTATA 59.985 33.333 17.90 0.00 0.00 1.47
5737 7509 8.190326 TGGAGTATATTTATCTTCCGTGTCAT 57.810 34.615 0.00 0.00 0.00 3.06
5738 7510 8.088365 TGGAGTATATTTATCTTCCGTGTCATG 58.912 37.037 0.00 0.00 0.00 3.07
5740 7512 8.190326 AGTATATTTATCTTCCGTGTCATGGA 57.810 34.615 9.90 9.90 0.00 3.41
5741 7513 8.816894 AGTATATTTATCTTCCGTGTCATGGAT 58.183 33.333 14.70 2.89 32.39 3.41
5742 7514 9.088512 GTATATTTATCTTCCGTGTCATGGATC 57.911 37.037 14.70 0.00 32.39 3.36
5745 7517 0.541392 CTTCCGTGTCATGGATCCCA 59.459 55.000 14.70 0.00 38.19 4.37
5770 7561 5.723405 TGCTAGGATCCACTGATAATATGCT 59.277 40.000 15.82 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 63 0.815734 CGTACTAGGTGGGAGGTGTG 59.184 60.000 0.00 0.00 0.00 3.82
144 162 3.583086 CTCCCTCCGTCCCATAATGTAAT 59.417 47.826 0.00 0.00 0.00 1.89
155 173 1.202722 TGTTTTCAACTCCCTCCGTCC 60.203 52.381 0.00 0.00 0.00 4.79
241 259 6.422701 TGACTTCACAAAAGTCTAATACGTGG 59.577 38.462 16.39 0.00 45.13 4.94
243 261 8.333186 GTTTGACTTCACAAAAGTCTAATACGT 58.667 33.333 16.39 0.00 45.13 3.57
252 270 5.477510 TGCAATGTTTGACTTCACAAAAGT 58.522 33.333 0.00 0.00 40.62 2.66
426 444 8.296713 GCATATAAGTTCTGTCCAAAGTCAAAA 58.703 33.333 0.00 0.00 0.00 2.44
454 472 3.007723 ACTCCCTTCGGTCCTTTTTAGTC 59.992 47.826 0.00 0.00 0.00 2.59
510 528 4.520492 ACAGATGACTCCAACCAAACAATC 59.480 41.667 0.00 0.00 0.00 2.67
766 829 8.966868 TGGGATCAAGAAAGGATATAAACAAAC 58.033 33.333 0.00 0.00 0.00 2.93
771 834 7.838696 TGCTTTGGGATCAAGAAAGGATATAAA 59.161 33.333 10.59 0.00 33.98 1.40
831 898 0.104304 ACTGCTTGTCGTTCCGTCTT 59.896 50.000 0.00 0.00 0.00 3.01
832 899 0.956633 TACTGCTTGTCGTTCCGTCT 59.043 50.000 0.00 0.00 0.00 4.18
833 900 1.918609 GATACTGCTTGTCGTTCCGTC 59.081 52.381 0.00 0.00 0.00 4.79
834 901 1.271379 TGATACTGCTTGTCGTTCCGT 59.729 47.619 0.00 0.00 0.00 4.69
835 902 1.990799 TGATACTGCTTGTCGTTCCG 58.009 50.000 0.00 0.00 0.00 4.30
836 903 3.485877 GCAATGATACTGCTTGTCGTTCC 60.486 47.826 0.00 0.00 36.84 3.62
876 943 8.463930 TTCAACAACACTAGGAATTGATCTTT 57.536 30.769 9.18 0.00 0.00 2.52
932 1000 7.094205 ACAATAGAACATGAAGAAAAAGCGGAT 60.094 33.333 0.00 0.00 0.00 4.18
934 1002 6.381801 ACAATAGAACATGAAGAAAAAGCGG 58.618 36.000 0.00 0.00 0.00 5.52
974 1042 8.090788 TCTTAGTTCCACAATAGCTTAGGATT 57.909 34.615 0.00 0.00 0.00 3.01
1008 1076 2.108970 GTAATTCCGGACTGAGGGAGT 58.891 52.381 1.83 0.00 37.76 3.85
1009 1077 2.362717 GAGTAATTCCGGACTGAGGGAG 59.637 54.545 1.83 0.00 33.01 4.30
1010 1078 2.385803 GAGTAATTCCGGACTGAGGGA 58.614 52.381 1.83 0.00 0.00 4.20
1011 1079 1.067212 CGAGTAATTCCGGACTGAGGG 59.933 57.143 1.83 0.00 0.00 4.30
1012 1080 1.749634 ACGAGTAATTCCGGACTGAGG 59.250 52.381 1.83 0.00 0.00 3.86
1013 1081 2.683867 AGACGAGTAATTCCGGACTGAG 59.316 50.000 1.83 0.00 0.00 3.35
1014 1082 2.422479 CAGACGAGTAATTCCGGACTGA 59.578 50.000 1.83 0.00 36.90 3.41
1015 1083 2.422479 TCAGACGAGTAATTCCGGACTG 59.578 50.000 1.83 4.97 36.49 3.51
1016 1084 2.683867 CTCAGACGAGTAATTCCGGACT 59.316 50.000 1.83 0.00 34.29 3.85
1017 1085 2.681848 TCTCAGACGAGTAATTCCGGAC 59.318 50.000 1.83 0.00 40.44 4.79
1018 1086 2.995283 TCTCAGACGAGTAATTCCGGA 58.005 47.619 0.00 0.00 40.44 5.14
1019 1087 3.777465 TTCTCAGACGAGTAATTCCGG 57.223 47.619 0.00 0.00 40.44 5.14
1020 1088 5.340803 TCATTTCTCAGACGAGTAATTCCG 58.659 41.667 0.00 0.00 37.20 4.30
1021 1089 6.590292 TGTTCATTTCTCAGACGAGTAATTCC 59.410 38.462 0.00 0.00 37.20 3.01
1022 1090 7.582435 TGTTCATTTCTCAGACGAGTAATTC 57.418 36.000 0.00 0.00 37.20 2.17
1023 1091 7.962964 TTGTTCATTTCTCAGACGAGTAATT 57.037 32.000 0.00 0.00 37.20 1.40
1024 1092 7.962964 TTTGTTCATTTCTCAGACGAGTAAT 57.037 32.000 0.00 0.00 39.16 1.89
1025 1093 7.780008 TTTTGTTCATTTCTCAGACGAGTAA 57.220 32.000 0.00 0.00 40.44 2.24
1026 1094 7.780008 TTTTTGTTCATTTCTCAGACGAGTA 57.220 32.000 0.00 0.00 40.44 2.59
1027 1095 6.677781 TTTTTGTTCATTTCTCAGACGAGT 57.322 33.333 0.00 0.00 40.44 4.18
1028 1096 7.355017 TCATTTTTGTTCATTTCTCAGACGAG 58.645 34.615 0.00 0.00 40.98 4.18
1029 1097 7.258022 TCATTTTTGTTCATTTCTCAGACGA 57.742 32.000 0.00 0.00 0.00 4.20
1030 1098 7.912949 TTCATTTTTGTTCATTTCTCAGACG 57.087 32.000 0.00 0.00 0.00 4.18
1031 1099 9.252962 ACATTCATTTTTGTTCATTTCTCAGAC 57.747 29.630 0.00 0.00 0.00 3.51
1071 1139 9.170890 TGGAGGAATGGATGTATCTAAACTTAT 57.829 33.333 0.00 0.00 0.00 1.73
1072 1140 8.561536 TGGAGGAATGGATGTATCTAAACTTA 57.438 34.615 0.00 0.00 0.00 2.24
1073 1141 7.451731 TGGAGGAATGGATGTATCTAAACTT 57.548 36.000 0.00 0.00 0.00 2.66
1074 1142 7.092444 TGTTGGAGGAATGGATGTATCTAAACT 60.092 37.037 0.00 0.00 0.00 2.66
1075 1143 7.054124 TGTTGGAGGAATGGATGTATCTAAAC 58.946 38.462 0.00 0.00 0.00 2.01
1076 1144 7.206789 TGTTGGAGGAATGGATGTATCTAAA 57.793 36.000 0.00 0.00 0.00 1.85
1077 1145 6.823286 TGTTGGAGGAATGGATGTATCTAA 57.177 37.500 0.00 0.00 0.00 2.10
1078 1146 6.386927 ACTTGTTGGAGGAATGGATGTATCTA 59.613 38.462 0.00 0.00 0.00 1.98
1079 1147 5.192522 ACTTGTTGGAGGAATGGATGTATCT 59.807 40.000 0.00 0.00 0.00 1.98
1080 1148 5.440610 ACTTGTTGGAGGAATGGATGTATC 58.559 41.667 0.00 0.00 0.00 2.24
1081 1149 5.456921 ACTTGTTGGAGGAATGGATGTAT 57.543 39.130 0.00 0.00 0.00 2.29
1082 1150 4.927267 ACTTGTTGGAGGAATGGATGTA 57.073 40.909 0.00 0.00 0.00 2.29
1083 1151 3.814504 ACTTGTTGGAGGAATGGATGT 57.185 42.857 0.00 0.00 0.00 3.06
1084 1152 6.183360 GGAAATACTTGTTGGAGGAATGGATG 60.183 42.308 0.00 0.00 0.00 3.51
1085 1153 5.893824 GGAAATACTTGTTGGAGGAATGGAT 59.106 40.000 0.00 0.00 0.00 3.41
1086 1154 5.261216 GGAAATACTTGTTGGAGGAATGGA 58.739 41.667 0.00 0.00 0.00 3.41
1087 1155 4.096382 CGGAAATACTTGTTGGAGGAATGG 59.904 45.833 0.00 0.00 0.00 3.16
1088 1156 4.096382 CCGGAAATACTTGTTGGAGGAATG 59.904 45.833 0.00 0.00 0.00 2.67
1089 1157 4.018779 TCCGGAAATACTTGTTGGAGGAAT 60.019 41.667 0.00 0.00 0.00 3.01
1090 1158 3.328343 TCCGGAAATACTTGTTGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
1091 1159 2.907696 TCCGGAAATACTTGTTGGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
1092 1160 3.007635 GTCCGGAAATACTTGTTGGAGG 58.992 50.000 5.23 0.00 0.00 4.30
1093 1161 2.671396 CGTCCGGAAATACTTGTTGGAG 59.329 50.000 5.23 0.00 0.00 3.86
1094 1162 2.613474 CCGTCCGGAAATACTTGTTGGA 60.613 50.000 5.23 0.00 37.50 3.53
1095 1163 1.735571 CCGTCCGGAAATACTTGTTGG 59.264 52.381 5.23 0.00 37.50 3.77
1096 1164 2.671396 CTCCGTCCGGAAATACTTGTTG 59.329 50.000 5.23 0.00 44.66 3.33
1097 1165 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
1098 1166 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1099 1167 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1100 1168 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1101 1169 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1102 1170 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1103 1171 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1104 1172 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1105 1173 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
1106 1174 0.251742 TTTACTCCCTCCGTCCGGAA 60.252 55.000 5.23 0.00 44.66 4.30
1107 1175 0.032813 ATTTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
1108 1176 0.104304 CATTTACTCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
1109 1177 1.108776 TCATTTACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
1110 1178 3.532542 CTTTCATTTACTCCCTCCGTCC 58.467 50.000 0.00 0.00 0.00 4.79
1111 1179 3.197116 TCCTTTCATTTACTCCCTCCGTC 59.803 47.826 0.00 0.00 0.00 4.79
1112 1180 3.178865 TCCTTTCATTTACTCCCTCCGT 58.821 45.455 0.00 0.00 0.00 4.69
1113 1181 3.432326 CCTCCTTTCATTTACTCCCTCCG 60.432 52.174 0.00 0.00 0.00 4.63
1114 1182 3.780850 TCCTCCTTTCATTTACTCCCTCC 59.219 47.826 0.00 0.00 0.00 4.30
1115 1183 5.638530 ATCCTCCTTTCATTTACTCCCTC 57.361 43.478 0.00 0.00 0.00 4.30
1116 1184 6.447084 TGTAATCCTCCTTTCATTTACTCCCT 59.553 38.462 0.00 0.00 0.00 4.20
1117 1185 6.659824 TGTAATCCTCCTTTCATTTACTCCC 58.340 40.000 0.00 0.00 0.00 4.30
1118 1186 7.283354 CCTTGTAATCCTCCTTTCATTTACTCC 59.717 40.741 0.00 0.00 0.00 3.85
1119 1187 8.047310 TCCTTGTAATCCTCCTTTCATTTACTC 58.953 37.037 0.00 0.00 0.00 2.59
1167 1236 5.056480 TGGAACCAGTAATCATTATGCTCG 58.944 41.667 0.00 0.00 0.00 5.03
1213 1282 4.127171 GAGGTTAAGCACTGACAGAACAA 58.873 43.478 10.08 0.00 0.00 2.83
1605 1679 1.006571 CAGTGGACTACGGTGCGTT 60.007 57.895 0.00 0.00 41.54 4.84
1614 1688 1.629043 AACGGAAGAGCAGTGGACTA 58.371 50.000 0.00 0.00 0.00 2.59
2158 2236 3.701040 ACAGAACACAAAAGTGGCTTCAT 59.299 39.130 0.38 0.00 0.00 2.57
2281 2359 5.534654 TCGAAAACAGTTCCCATGAATCTTT 59.465 36.000 0.00 0.00 31.98 2.52
2419 2506 5.163663 CCTGTAGTTGTTGCTTTGAACTCAA 60.164 40.000 0.00 0.00 32.27 3.02
2963 3131 5.824624 ACCACATAATGTTCCACATCTGATC 59.175 40.000 6.46 0.00 37.97 2.92
2968 3136 7.202526 CCATTAACCACATAATGTTCCACATC 58.797 38.462 6.37 0.00 37.97 3.06
2983 3160 3.263425 TCCTCTTCTGACCCATTAACCAC 59.737 47.826 0.00 0.00 0.00 4.16
2984 3161 3.526899 TCCTCTTCTGACCCATTAACCA 58.473 45.455 0.00 0.00 0.00 3.67
2985 3162 4.779993 ATCCTCTTCTGACCCATTAACC 57.220 45.455 0.00 0.00 0.00 2.85
2986 3163 9.041354 AGATATATCCTCTTCTGACCCATTAAC 57.959 37.037 9.18 0.00 0.00 2.01
3009 3186 9.466497 AAATCCTTGTGTGATGTGTTAATAGAT 57.534 29.630 0.00 0.00 0.00 1.98
3010 3187 8.862325 AAATCCTTGTGTGATGTGTTAATAGA 57.138 30.769 0.00 0.00 0.00 1.98
3013 3190 9.295825 TCTAAAATCCTTGTGTGATGTGTTAAT 57.704 29.630 0.00 0.00 0.00 1.40
3192 3372 4.114073 TGAGCTTCAATGTTTGCAAGTTG 58.886 39.130 0.00 7.06 0.00 3.16
3685 3879 5.796935 CGCATCTTGGACAGTCAAAAATTAG 59.203 40.000 2.17 0.00 0.00 1.73
3686 3880 5.471797 TCGCATCTTGGACAGTCAAAAATTA 59.528 36.000 2.17 0.00 0.00 1.40
3699 3893 3.570125 CAGGTATACTCTCGCATCTTGGA 59.430 47.826 2.25 0.00 0.00 3.53
3709 3903 6.478129 AGAGCCATACTACAGGTATACTCTC 58.522 44.000 2.25 7.92 43.04 3.20
3736 3930 5.885449 AGGGACAAAATCTCCAGAGATAG 57.115 43.478 10.49 6.81 46.75 2.08
3757 3951 4.282195 GGTCAGGTTATCCATCTCCTGTAG 59.718 50.000 9.39 0.00 45.18 2.74
3821 4022 5.193679 CAGGGAAAATTTGTAGAGGGGTAG 58.806 45.833 0.00 0.00 0.00 3.18
3930 4131 0.804989 CTTCAAGCATGGGGAACGTC 59.195 55.000 0.00 0.00 0.00 4.34
4018 4219 8.235359 ACTATATTAGTGTGGACTCCAACTAC 57.765 38.462 14.71 8.90 37.69 2.73
4037 4238 9.890629 TGCTCATGAAAACTAAACTGACTATAT 57.109 29.630 0.00 0.00 0.00 0.86
4040 4241 7.334421 GGATGCTCATGAAAACTAAACTGACTA 59.666 37.037 0.00 0.00 0.00 2.59
4056 4257 3.028850 AGAACCCAAATGGATGCTCATG 58.971 45.455 0.00 0.00 37.39 3.07
4161 4365 7.125792 ACTCTCAAGTTTTTCCAGAGTTCTA 57.874 36.000 0.00 0.00 40.79 2.10
4384 4588 5.583854 CCTCCATAGACAATGAAGTGTTCTG 59.416 44.000 0.00 0.00 37.86 3.02
4533 4737 0.693622 TCCCATCGGGCAGTGTTTTA 59.306 50.000 0.00 0.00 43.94 1.52
4567 4771 3.309954 GGACAACTCCAAATCGTCATAGC 59.690 47.826 0.00 0.00 36.42 2.97
4570 4774 2.346803 CGGACAACTCCAAATCGTCAT 58.653 47.619 0.00 0.00 36.12 3.06
5124 5524 2.007608 GTACGAAATGGGAGTGCTTCC 58.992 52.381 0.00 0.00 46.00 3.46
5127 5527 1.671850 CGTGTACGAAATGGGAGTGCT 60.672 52.381 0.00 0.00 43.02 4.40
5231 6943 6.453092 CCATTGTGCTGAAGAGAAATTCTTT 58.547 36.000 0.00 0.00 46.12 2.52
5269 6985 7.035840 GGATTGTTTGTAGCAATCTCATCAT 57.964 36.000 14.89 0.00 46.70 2.45
5278 6994 2.279935 ACGGGGATTGTTTGTAGCAA 57.720 45.000 0.00 0.00 0.00 3.91
5281 6997 2.980568 TGCTACGGGGATTGTTTGTAG 58.019 47.619 0.00 0.00 36.47 2.74
5286 7002 4.821805 CAGATTATTGCTACGGGGATTGTT 59.178 41.667 0.00 0.00 0.00 2.83
5287 7003 4.102524 TCAGATTATTGCTACGGGGATTGT 59.897 41.667 0.00 0.00 0.00 2.71
5288 7004 4.452455 GTCAGATTATTGCTACGGGGATTG 59.548 45.833 0.00 0.00 0.00 2.67
5294 7010 3.243434 ACGAGGTCAGATTATTGCTACGG 60.243 47.826 0.00 0.00 0.00 4.02
5295 7011 3.731216 CACGAGGTCAGATTATTGCTACG 59.269 47.826 0.00 0.00 0.00 3.51
5297 7013 4.933330 GACACGAGGTCAGATTATTGCTA 58.067 43.478 7.03 0.00 46.19 3.49
5333 7070 0.329261 TCATGTCAGGCTCCCAAAGG 59.671 55.000 0.00 0.00 0.00 3.11
5334 7071 2.089980 CTTCATGTCAGGCTCCCAAAG 58.910 52.381 0.00 0.00 0.00 2.77
5335 7072 1.425066 ACTTCATGTCAGGCTCCCAAA 59.575 47.619 0.00 0.00 0.00 3.28
5336 7073 1.067295 ACTTCATGTCAGGCTCCCAA 58.933 50.000 0.00 0.00 0.00 4.12
5337 7074 1.067295 AACTTCATGTCAGGCTCCCA 58.933 50.000 0.00 0.00 0.00 4.37
5338 7075 2.087646 GAAACTTCATGTCAGGCTCCC 58.912 52.381 0.00 0.00 0.00 4.30
5339 7076 2.087646 GGAAACTTCATGTCAGGCTCC 58.912 52.381 0.00 0.00 0.00 4.70
5340 7077 3.064900 AGGAAACTTCATGTCAGGCTC 57.935 47.619 0.00 0.00 37.44 4.70
5341 7078 3.584848 AGTAGGAAACTTCATGTCAGGCT 59.415 43.478 0.00 0.00 43.67 4.58
5342 7079 3.944087 AGTAGGAAACTTCATGTCAGGC 58.056 45.455 0.00 0.00 43.67 4.85
5343 7080 6.287589 AGTAGTAGGAAACTTCATGTCAGG 57.712 41.667 0.00 0.00 43.67 3.86
5344 7081 7.971168 CAGTAGTAGTAGGAAACTTCATGTCAG 59.029 40.741 0.00 0.00 43.67 3.51
5345 7082 7.577046 GCAGTAGTAGTAGGAAACTTCATGTCA 60.577 40.741 0.00 0.00 43.67 3.58
5346 7083 6.752815 GCAGTAGTAGTAGGAAACTTCATGTC 59.247 42.308 0.00 0.00 43.67 3.06
5347 7084 6.437793 AGCAGTAGTAGTAGGAAACTTCATGT 59.562 38.462 0.00 0.00 43.67 3.21
5348 7085 6.868622 AGCAGTAGTAGTAGGAAACTTCATG 58.131 40.000 0.00 0.00 43.67 3.07
5349 7086 7.835181 AGTAGCAGTAGTAGTAGGAAACTTCAT 59.165 37.037 0.00 0.00 43.67 2.57
5350 7087 7.173722 AGTAGCAGTAGTAGTAGGAAACTTCA 58.826 38.462 0.00 0.00 43.67 3.02
5351 7088 7.628769 AGTAGCAGTAGTAGTAGGAAACTTC 57.371 40.000 0.00 0.00 43.67 3.01
5352 7089 8.105829 TGTAGTAGCAGTAGTAGTAGGAAACTT 58.894 37.037 0.00 0.00 43.67 2.66
5354 7091 7.768120 TCTGTAGTAGCAGTAGTAGTAGGAAAC 59.232 40.741 0.00 0.00 37.70 2.78
5355 7092 7.768120 GTCTGTAGTAGCAGTAGTAGTAGGAAA 59.232 40.741 0.00 0.00 37.70 3.13
5356 7093 7.093156 TGTCTGTAGTAGCAGTAGTAGTAGGAA 60.093 40.741 0.00 0.00 37.70 3.36
5357 7094 6.382282 TGTCTGTAGTAGCAGTAGTAGTAGGA 59.618 42.308 0.00 0.00 37.70 2.94
5358 7095 6.580788 TGTCTGTAGTAGCAGTAGTAGTAGG 58.419 44.000 0.00 0.00 37.70 3.18
5359 7096 7.980662 TCTTGTCTGTAGTAGCAGTAGTAGTAG 59.019 40.741 0.00 0.00 37.70 2.57
5360 7097 7.845037 TCTTGTCTGTAGTAGCAGTAGTAGTA 58.155 38.462 0.00 0.00 37.70 1.82
5361 7098 6.709281 TCTTGTCTGTAGTAGCAGTAGTAGT 58.291 40.000 0.00 0.00 37.70 2.73
5362 7099 6.238266 GCTCTTGTCTGTAGTAGCAGTAGTAG 60.238 46.154 0.00 0.00 37.70 2.57
5363 7100 5.585445 GCTCTTGTCTGTAGTAGCAGTAGTA 59.415 44.000 0.00 0.00 37.70 1.82
5364 7101 4.396790 GCTCTTGTCTGTAGTAGCAGTAGT 59.603 45.833 0.00 0.00 37.70 2.73
5365 7102 4.396478 TGCTCTTGTCTGTAGTAGCAGTAG 59.604 45.833 0.00 0.00 35.20 2.57
5366 7103 4.332828 TGCTCTTGTCTGTAGTAGCAGTA 58.667 43.478 0.00 0.00 35.20 2.74
5367 7104 3.157881 TGCTCTTGTCTGTAGTAGCAGT 58.842 45.455 0.00 0.00 35.20 4.40
5368 7105 3.857549 TGCTCTTGTCTGTAGTAGCAG 57.142 47.619 0.00 0.00 35.20 4.24
5369 7106 4.600692 TTTGCTCTTGTCTGTAGTAGCA 57.399 40.909 0.00 0.00 38.14 3.49
5370 7107 6.487689 AAATTTGCTCTTGTCTGTAGTAGC 57.512 37.500 0.00 0.00 0.00 3.58
5372 7109 9.719355 TGAATAAATTTGCTCTTGTCTGTAGTA 57.281 29.630 0.00 0.00 0.00 1.82
5373 7110 8.621532 TGAATAAATTTGCTCTTGTCTGTAGT 57.378 30.769 0.00 0.00 0.00 2.73
5374 7111 7.695618 GCTGAATAAATTTGCTCTTGTCTGTAG 59.304 37.037 0.00 0.00 0.00 2.74
5375 7112 7.391554 AGCTGAATAAATTTGCTCTTGTCTGTA 59.608 33.333 0.00 0.00 0.00 2.74
5376 7113 6.208204 AGCTGAATAAATTTGCTCTTGTCTGT 59.792 34.615 0.00 0.00 0.00 3.41
5377 7114 6.527023 CAGCTGAATAAATTTGCTCTTGTCTG 59.473 38.462 8.42 0.00 31.11 3.51
5378 7115 6.208204 ACAGCTGAATAAATTTGCTCTTGTCT 59.792 34.615 23.35 0.00 31.11 3.41
5379 7116 6.385033 ACAGCTGAATAAATTTGCTCTTGTC 58.615 36.000 23.35 0.00 31.11 3.18
5382 7119 6.752168 ACAACAGCTGAATAAATTTGCTCTT 58.248 32.000 23.35 0.00 31.11 2.85
5384 7121 6.385033 AGACAACAGCTGAATAAATTTGCTC 58.615 36.000 23.35 11.72 31.11 4.26
5408 7145 8.321353 AGAGTTGATTGGTGATGATTAGTTGTA 58.679 33.333 0.00 0.00 0.00 2.41
5438 7180 5.084519 TCCTGATTAGTACCAGTGTTCACT 58.915 41.667 0.00 0.00 0.00 3.41
5439 7181 5.401531 TCCTGATTAGTACCAGTGTTCAC 57.598 43.478 0.00 0.00 0.00 3.18
5487 7258 5.833667 TCCTCTGATGATTAATCCAGTACGT 59.166 40.000 12.90 0.00 34.00 3.57
5605 7376 1.948104 CAACCTCAAGAACGTGGACA 58.052 50.000 0.00 0.00 0.00 4.02
5614 7385 2.281484 GGTGCGGCAACCTCAAGA 60.281 61.111 6.80 0.00 37.24 3.02
5628 7399 1.374758 GAAGTGGCAGACGGAGGTG 60.375 63.158 0.00 0.00 0.00 4.00
5629 7400 2.584391 GGAAGTGGCAGACGGAGGT 61.584 63.158 0.00 0.00 0.00 3.85
5630 7401 2.266055 GGAAGTGGCAGACGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
5631 7402 2.266055 GGGAAGTGGCAGACGGAG 59.734 66.667 0.00 0.00 0.00 4.63
5632 7403 3.319198 GGGGAAGTGGCAGACGGA 61.319 66.667 0.00 0.00 0.00 4.69
5633 7404 3.322466 AGGGGAAGTGGCAGACGG 61.322 66.667 0.00 0.00 0.00 4.79
5634 7405 2.046892 CAGGGGAAGTGGCAGACG 60.047 66.667 0.00 0.00 0.00 4.18
5635 7406 2.360475 GCAGGGGAAGTGGCAGAC 60.360 66.667 0.00 0.00 0.00 3.51
5636 7407 3.650950 GGCAGGGGAAGTGGCAGA 61.651 66.667 0.00 0.00 40.16 4.26
5637 7408 3.655211 AGGCAGGGGAAGTGGCAG 61.655 66.667 0.00 0.00 42.81 4.85
5638 7409 3.970410 CAGGCAGGGGAAGTGGCA 61.970 66.667 0.00 0.00 42.81 4.92
5639 7410 3.650950 TCAGGCAGGGGAAGTGGC 61.651 66.667 0.00 0.00 40.72 5.01
5640 7411 2.352805 GTCAGGCAGGGGAAGTGG 59.647 66.667 0.00 0.00 0.00 4.00
5641 7412 1.856539 ATGGTCAGGCAGGGGAAGTG 61.857 60.000 0.00 0.00 0.00 3.16
5642 7413 1.542375 ATGGTCAGGCAGGGGAAGT 60.542 57.895 0.00 0.00 0.00 3.01
5643 7414 1.225704 GATGGTCAGGCAGGGGAAG 59.774 63.158 0.00 0.00 0.00 3.46
5644 7415 0.044092 TAGATGGTCAGGCAGGGGAA 59.956 55.000 0.00 0.00 0.00 3.97
5645 7416 0.691078 GTAGATGGTCAGGCAGGGGA 60.691 60.000 0.00 0.00 0.00 4.81
5646 7417 0.692419 AGTAGATGGTCAGGCAGGGG 60.692 60.000 0.00 0.00 0.00 4.79
5647 7418 0.467384 CAGTAGATGGTCAGGCAGGG 59.533 60.000 0.00 0.00 0.00 4.45
5648 7419 1.411977 CTCAGTAGATGGTCAGGCAGG 59.588 57.143 0.00 0.00 0.00 4.85
5649 7420 1.411977 CCTCAGTAGATGGTCAGGCAG 59.588 57.143 0.00 0.00 0.00 4.85
5650 7421 1.273267 ACCTCAGTAGATGGTCAGGCA 60.273 52.381 0.00 0.00 0.00 4.75
5651 7422 1.137872 CACCTCAGTAGATGGTCAGGC 59.862 57.143 0.00 0.00 30.72 4.85
5652 7423 1.137872 GCACCTCAGTAGATGGTCAGG 59.862 57.143 0.00 0.00 30.72 3.86
5653 7424 2.106566 AGCACCTCAGTAGATGGTCAG 58.893 52.381 0.00 0.00 30.72 3.51
5654 7425 2.238084 AGCACCTCAGTAGATGGTCA 57.762 50.000 0.00 0.00 30.72 4.02
5655 7426 4.737855 TTAAGCACCTCAGTAGATGGTC 57.262 45.455 0.00 0.00 30.72 4.02
5656 7427 5.700402 AATTAAGCACCTCAGTAGATGGT 57.300 39.130 0.00 0.00 33.87 3.55
5657 7428 6.480320 GTGTAATTAAGCACCTCAGTAGATGG 59.520 42.308 0.00 0.00 0.00 3.51
5707 7479 7.713507 CACGGAAGATAAATATACTCCAACCAA 59.286 37.037 0.00 0.00 0.00 3.67
5720 7492 5.308825 GGATCCATGACACGGAAGATAAAT 58.691 41.667 6.95 0.00 35.77 1.40
5742 7514 1.427809 TCAGTGGATCCTAGCATGGG 58.572 55.000 14.23 0.00 38.63 4.00
5745 7517 6.386342 AGCATATTATCAGTGGATCCTAGCAT 59.614 38.462 14.23 2.86 34.89 3.79
5757 7544 9.632638 AACATTTAGTTCCAGCATATTATCAGT 57.367 29.630 0.00 0.00 34.74 3.41
5770 7561 4.099266 AGCAAGCAACAACATTTAGTTCCA 59.901 37.500 0.00 0.00 38.74 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.