Multiple sequence alignment - TraesCS7D01G017300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G017300 chr7D 100.000 4208 0 0 1 4208 7547344 7551551 0.000000e+00 7771.0
1 TraesCS7D01G017300 chr7D 85.964 3142 417 12 1080 4204 8256015 8252881 0.000000e+00 3338.0
2 TraesCS7D01G017300 chr7D 86.271 3081 392 21 666 3728 7560690 7563757 0.000000e+00 3317.0
3 TraesCS7D01G017300 chr7D 82.968 3282 510 27 944 4197 8030542 8033802 0.000000e+00 2918.0
4 TraesCS7D01G017300 chr7D 83.561 2786 387 39 921 3671 8052691 8055440 0.000000e+00 2542.0
5 TraesCS7D01G017300 chr7D 84.913 1372 183 22 2845 4205 7714341 7715699 0.000000e+00 1365.0
6 TraesCS7D01G017300 chr7D 86.638 232 24 7 238 468 8175874 8176099 2.510000e-62 250.0
7 TraesCS7D01G017300 chr7D 76.440 191 31 11 239 424 7711641 7711822 1.610000e-14 91.6
8 TraesCS7D01G017300 chr7D 94.000 50 3 0 616 665 7712197 7712246 4.510000e-10 76.8
9 TraesCS7D01G017300 chr3B 84.648 3993 513 54 250 4205 741462412 741466341 0.000000e+00 3886.0
10 TraesCS7D01G017300 chr3B 82.154 325 50 8 212 534 741441822 741442140 5.360000e-69 272.0
11 TraesCS7D01G017300 chr7A 84.793 3551 483 34 696 4208 3432469 3428938 0.000000e+00 3513.0
12 TraesCS7D01G017300 chr7A 84.807 3212 438 33 1016 4204 8695097 8691913 0.000000e+00 3182.0
13 TraesCS7D01G017300 chr7A 82.968 1368 206 16 2845 4202 8655496 8656846 0.000000e+00 1210.0
14 TraesCS7D01G017300 chr7A 82.993 1323 220 5 2845 4164 56206648 56207968 0.000000e+00 1192.0
15 TraesCS7D01G017300 chr4A 86.365 3139 412 16 1074 4205 731616818 731613689 0.000000e+00 3411.0
16 TraesCS7D01G017300 chr4A 84.003 2613 399 14 1017 3625 732105442 732108039 0.000000e+00 2492.0
17 TraesCS7D01G017300 chr4A 84.888 2144 295 24 671 2799 731761625 731759496 0.000000e+00 2137.0
18 TraesCS7D01G017300 chr4A 84.091 1364 212 4 2845 4205 732379861 732381222 0.000000e+00 1312.0
19 TraesCS7D01G017300 chr4A 83.413 1260 203 4 2846 4103 732060357 732061612 0.000000e+00 1164.0
20 TraesCS7D01G017300 chr4A 88.451 355 33 8 267 620 731753983 731753636 5.030000e-114 422.0
21 TraesCS7D01G017300 chr4A 91.189 227 14 4 1 222 731754207 731753982 1.900000e-78 303.0
22 TraesCS7D01G017300 chr4A 82.374 278 26 11 607 862 731875839 731875563 1.970000e-53 220.0
23 TraesCS7D01G017300 chr4A 82.550 149 21 4 181 328 732096772 732096916 4.420000e-25 126.0
24 TraesCS7D01G017300 chr4A 78.307 189 30 9 247 431 731862760 731862579 1.240000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G017300 chr7D 7547344 7551551 4207 False 7771.000000 7771 100.000000 1 4208 1 chr7D.!!$F1 4207
1 TraesCS7D01G017300 chr7D 8252881 8256015 3134 True 3338.000000 3338 85.964000 1080 4204 1 chr7D.!!$R1 3124
2 TraesCS7D01G017300 chr7D 7560690 7563757 3067 False 3317.000000 3317 86.271000 666 3728 1 chr7D.!!$F2 3062
3 TraesCS7D01G017300 chr7D 8030542 8033802 3260 False 2918.000000 2918 82.968000 944 4197 1 chr7D.!!$F3 3253
4 TraesCS7D01G017300 chr7D 8052691 8055440 2749 False 2542.000000 2542 83.561000 921 3671 1 chr7D.!!$F4 2750
5 TraesCS7D01G017300 chr7D 7711641 7715699 4058 False 511.133333 1365 85.117667 239 4205 3 chr7D.!!$F6 3966
6 TraesCS7D01G017300 chr3B 741462412 741466341 3929 False 3886.000000 3886 84.648000 250 4205 1 chr3B.!!$F2 3955
7 TraesCS7D01G017300 chr7A 3428938 3432469 3531 True 3513.000000 3513 84.793000 696 4208 1 chr7A.!!$R1 3512
8 TraesCS7D01G017300 chr7A 8691913 8695097 3184 True 3182.000000 3182 84.807000 1016 4204 1 chr7A.!!$R2 3188
9 TraesCS7D01G017300 chr7A 8655496 8656846 1350 False 1210.000000 1210 82.968000 2845 4202 1 chr7A.!!$F1 1357
10 TraesCS7D01G017300 chr7A 56206648 56207968 1320 False 1192.000000 1192 82.993000 2845 4164 1 chr7A.!!$F2 1319
11 TraesCS7D01G017300 chr4A 731613689 731616818 3129 True 3411.000000 3411 86.365000 1074 4205 1 chr4A.!!$R1 3131
12 TraesCS7D01G017300 chr4A 732105442 732108039 2597 False 2492.000000 2492 84.003000 1017 3625 1 chr4A.!!$F3 2608
13 TraesCS7D01G017300 chr4A 731759496 731761625 2129 True 2137.000000 2137 84.888000 671 2799 1 chr4A.!!$R2 2128
14 TraesCS7D01G017300 chr4A 732379861 732381222 1361 False 1312.000000 1312 84.091000 2845 4205 1 chr4A.!!$F4 1360
15 TraesCS7D01G017300 chr4A 732060357 732061612 1255 False 1164.000000 1164 83.413000 2846 4103 1 chr4A.!!$F1 1257
16 TraesCS7D01G017300 chr4A 731753636 731754207 571 True 362.500000 422 89.820000 1 620 2 chr4A.!!$R5 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 868 0.179018 AACAGGGGAACACACAGCTC 60.179 55.000 0.00 0.0 0.00 4.09 F
1191 1575 1.596203 ACTCGTCGAGACCGTGACA 60.596 57.895 28.33 0.0 34.78 3.58 F
2197 2591 0.852777 CATCGGAAGGCGTATTGTCG 59.147 55.000 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 2031 0.819259 GGTCCAGCAGCAACTTCACA 60.819 55.000 0.0 0.0 0.00 3.58 R
2708 3114 1.153784 GCCATTTGCATGTGACGGG 60.154 57.895 0.0 0.0 40.77 5.28 R
3915 4405 0.250901 TCTTCCTGCAACCCAAGAGC 60.251 55.000 0.0 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 39 0.534412 AGGATTCTGGTCAGCTGACG 59.466 55.000 34.28 24.03 45.65 4.35
48 52 2.422479 CAGCTGACGGTAGTAAGTAGCA 59.578 50.000 8.42 0.00 31.18 3.49
49 53 2.683867 AGCTGACGGTAGTAAGTAGCAG 59.316 50.000 0.00 0.00 31.18 4.24
50 54 2.681848 GCTGACGGTAGTAAGTAGCAGA 59.318 50.000 0.00 0.00 31.18 4.26
51 55 3.242804 GCTGACGGTAGTAAGTAGCAGAG 60.243 52.174 0.00 0.00 31.18 3.35
52 56 3.940221 CTGACGGTAGTAAGTAGCAGAGT 59.060 47.826 0.00 0.00 0.00 3.24
53 57 3.937706 TGACGGTAGTAAGTAGCAGAGTC 59.062 47.826 0.00 0.00 0.00 3.36
54 58 4.190772 GACGGTAGTAAGTAGCAGAGTCT 58.809 47.826 0.00 0.00 0.00 3.24
55 59 4.190772 ACGGTAGTAAGTAGCAGAGTCTC 58.809 47.826 0.00 0.00 0.00 3.36
76 80 5.525745 TCTCTAGCGATAGACTGAAACTGAG 59.474 44.000 6.25 0.00 39.76 3.35
79 83 3.129638 AGCGATAGACTGAAACTGAGGAC 59.870 47.826 0.00 0.00 39.76 3.85
100 104 2.224305 CGGGACTTCTCACTTCTGGTTT 60.224 50.000 0.00 0.00 0.00 3.27
108 112 4.199310 TCTCACTTCTGGTTTGGAAACTG 58.801 43.478 2.44 0.00 38.89 3.16
147 151 9.653287 CCAGATAATATTTTTACGCTGGAGATA 57.347 33.333 0.00 0.00 43.22 1.98
184 188 5.891551 CCAGGTGCCCTTTACAATATAGTTT 59.108 40.000 0.00 0.00 0.00 2.66
218 222 4.534500 TCCTACAGCCATCCTTAAACTGAA 59.466 41.667 0.00 0.00 32.67 3.02
220 224 5.888161 CCTACAGCCATCCTTAAACTGAAAT 59.112 40.000 0.00 0.00 32.67 2.17
221 225 6.378280 CCTACAGCCATCCTTAAACTGAAATT 59.622 38.462 0.00 0.00 32.67 1.82
222 226 6.670695 ACAGCCATCCTTAAACTGAAATTT 57.329 33.333 0.00 0.00 32.67 1.82
223 227 7.775053 ACAGCCATCCTTAAACTGAAATTTA 57.225 32.000 0.00 0.00 32.67 1.40
224 228 8.366359 ACAGCCATCCTTAAACTGAAATTTAT 57.634 30.769 0.00 0.00 32.67 1.40
225 229 8.815912 ACAGCCATCCTTAAACTGAAATTTATT 58.184 29.630 0.00 0.00 32.67 1.40
226 230 9.305925 CAGCCATCCTTAAACTGAAATTTATTC 57.694 33.333 0.00 0.00 0.00 1.75
227 231 8.190784 AGCCATCCTTAAACTGAAATTTATTCG 58.809 33.333 0.00 0.00 0.00 3.34
228 232 8.188139 GCCATCCTTAAACTGAAATTTATTCGA 58.812 33.333 0.00 0.00 0.00 3.71
238 242 9.722056 AACTGAAATTTATTCGATGATGTAAGC 57.278 29.630 0.00 0.00 0.00 3.09
239 243 9.113838 ACTGAAATTTATTCGATGATGTAAGCT 57.886 29.630 0.00 0.00 0.00 3.74
240 244 9.591404 CTGAAATTTATTCGATGATGTAAGCTC 57.409 33.333 0.00 0.00 0.00 4.09
241 245 9.330063 TGAAATTTATTCGATGATGTAAGCTCT 57.670 29.630 0.00 0.00 0.00 4.09
248 252 5.866207 TCGATGATGTAAGCTCTAGAGGTA 58.134 41.667 24.07 9.99 38.35 3.08
302 307 5.636121 GTCATGAAAAGAATTGATGCAGCAA 59.364 36.000 21.11 21.11 0.00 3.91
305 310 5.224888 TGAAAAGAATTGATGCAGCAAGAC 58.775 37.500 23.14 17.67 0.00 3.01
333 338 7.165483 GCATCTTCAGAATTTTCTTGCGATAAG 59.835 37.037 0.00 0.00 34.74 1.73
375 384 6.716628 ACACAGAATTTCTTTCCTGCTTATGA 59.283 34.615 0.00 0.00 34.67 2.15
391 400 7.149569 TGCTTATGAGATTTCTGGTTTTCAG 57.850 36.000 0.00 0.00 44.68 3.02
431 442 4.092237 GGCCAACACACAAAAACAAGTTAC 59.908 41.667 0.00 0.00 0.00 2.50
478 489 3.822735 ACTGAAGTAGTACTGGCGTACAA 59.177 43.478 5.39 0.00 46.68 2.41
482 493 4.796038 AGTAGTACTGGCGTACAATTGT 57.204 40.909 16.68 16.68 46.68 2.71
484 495 5.888105 AGTAGTACTGGCGTACAATTGTAG 58.112 41.667 18.56 10.82 46.68 2.74
553 848 4.844085 TGGATTCCTTCTCTCCAACAACTA 59.156 41.667 3.95 0.00 36.15 2.24
554 849 5.309543 TGGATTCCTTCTCTCCAACAACTAA 59.690 40.000 3.95 0.00 36.15 2.24
562 857 3.050089 TCTCCAACAACTAAACAGGGGA 58.950 45.455 0.00 0.00 0.00 4.81
563 858 3.460340 TCTCCAACAACTAAACAGGGGAA 59.540 43.478 0.00 0.00 0.00 3.97
570 865 3.208747 ACTAAACAGGGGAACACACAG 57.791 47.619 0.00 0.00 0.00 3.66
571 866 1.880027 CTAAACAGGGGAACACACAGC 59.120 52.381 0.00 0.00 0.00 4.40
573 868 0.179018 AACAGGGGAACACACAGCTC 60.179 55.000 0.00 0.00 0.00 4.09
575 870 1.837051 AGGGGAACACACAGCTCGA 60.837 57.895 0.00 0.00 0.00 4.04
584 879 2.760650 ACACACAGCTCGATTATCTCCA 59.239 45.455 0.00 0.00 0.00 3.86
585 880 3.386078 ACACACAGCTCGATTATCTCCAT 59.614 43.478 0.00 0.00 0.00 3.41
609 904 6.835029 ATATAAAGTAAGGGCCACTGGTAA 57.165 37.500 6.18 0.00 0.00 2.85
646 941 3.008330 CAACTCAGCTCTTGGATTCCTG 58.992 50.000 3.95 0.00 0.00 3.86
669 979 5.082425 GGATCTTATCTCCATTTGCCCAAT 58.918 41.667 0.00 0.00 32.72 3.16
685 1038 1.821753 CCAATAACCGCACAATCCCAA 59.178 47.619 0.00 0.00 0.00 4.12
806 1174 2.570135 GTGAATGCTCTCCTCAATCCC 58.430 52.381 0.00 0.00 0.00 3.85
843 1216 6.699204 GCTCTTCATCGATTGTTCATCTTCTA 59.301 38.462 0.00 0.00 0.00 2.10
915 1293 7.062906 AGTATGTACGAGAGCTATACAATCG 57.937 40.000 0.00 0.00 39.22 3.34
1024 1402 2.094100 TCCTGGCTCCATAGGAAGAG 57.906 55.000 0.00 0.00 40.03 2.85
1066 1444 4.454161 TCTGTCAGCGCTTAATTGCTTTTA 59.546 37.500 7.50 0.00 40.03 1.52
1089 1473 3.691118 TGTTCCTTCATATGCTGCAGTTC 59.309 43.478 16.64 0.00 0.00 3.01
1091 1475 2.239402 TCCTTCATATGCTGCAGTTCCA 59.761 45.455 16.64 5.17 0.00 3.53
1191 1575 1.596203 ACTCGTCGAGACCGTGACA 60.596 57.895 28.33 0.00 34.78 3.58
1249 1633 1.661821 CGCCATCTGCTAGCCGTAC 60.662 63.158 13.29 0.00 38.05 3.67
1369 1753 2.094700 GTGCTCGATGACTTCCAGTACA 60.095 50.000 0.00 0.00 0.00 2.90
1566 1953 2.811101 CGTAGGGAGGAGCAGCAG 59.189 66.667 0.00 0.00 0.00 4.24
1628 2015 9.282569 CTCTAAGGAAATATTTGGAAGAGATGG 57.717 37.037 5.17 0.00 31.68 3.51
1639 2026 6.874278 TTGGAAGAGATGGTGATAAGAAGA 57.126 37.500 0.00 0.00 0.00 2.87
1644 2031 6.821616 AGAGATGGTGATAAGAAGATGGTT 57.178 37.500 0.00 0.00 0.00 3.67
1749 2136 5.238583 ACTCTTGCTAAGATGGTGTACAAC 58.761 41.667 3.20 3.20 36.82 3.32
1753 2140 3.006003 TGCTAAGATGGTGTACAACGACA 59.994 43.478 6.39 0.00 0.00 4.35
1767 2154 4.058817 ACAACGACAAAGAGATCCAAGAC 58.941 43.478 0.00 0.00 0.00 3.01
1833 2220 7.451501 TGATGTTATTGCTCTTGTGAAATCA 57.548 32.000 0.00 0.00 0.00 2.57
1863 2250 5.538053 TGAATTGGCTACAAATGGAAGTTCA 59.462 36.000 5.01 0.00 40.55 3.18
1875 2262 1.304713 AAGTTCAGCCATGCCTGGG 60.305 57.895 10.28 0.00 43.36 4.45
1917 2304 6.774656 AGAAGAAACTTGATGAAGTCATTGGT 59.225 34.615 0.00 0.00 41.87 3.67
1921 2308 3.755378 ACTTGATGAAGTCATTGGTCAGC 59.245 43.478 0.00 0.00 38.01 4.26
1990 2378 6.259123 AGAATTTGGGAGGATGAATTGAAGT 58.741 36.000 0.00 0.00 0.00 3.01
2037 2425 4.174009 CAGGAAGTGTTATAGTGGTCACG 58.826 47.826 0.00 0.00 36.16 4.35
2045 2433 4.229096 GTTATAGTGGTCACGTGTCGAAA 58.771 43.478 16.51 0.00 36.20 3.46
2068 2456 4.080356 ACAAGCAAGTGGCCTCTATAATGA 60.080 41.667 7.96 0.00 46.50 2.57
2101 2489 3.181450 GCCCCATGAGCTAGTATTTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
2109 2497 6.625362 TGAGCTAGTATTTCTGTGTGAAGAG 58.375 40.000 0.00 0.00 35.89 2.85
2127 2515 5.653769 TGAAGAGGATTCATGGGAATTGTTC 59.346 40.000 0.00 0.00 43.69 3.18
2129 2517 5.835582 AGAGGATTCATGGGAATTGTTCTT 58.164 37.500 0.00 0.00 43.69 2.52
2169 2563 1.072015 GGCATAGAGGAGCAAGCAGAT 59.928 52.381 0.00 0.00 0.00 2.90
2197 2591 0.852777 CATCGGAAGGCGTATTGTCG 59.147 55.000 0.00 0.00 0.00 4.35
2211 2605 1.098712 TTGTCGATAAATGCGGGGGC 61.099 55.000 0.00 0.00 0.00 5.80
2294 2688 2.678336 GGAAGGCCATCGAACAAAGTAG 59.322 50.000 5.01 0.00 0.00 2.57
2309 2703 5.518865 ACAAAGTAGCATTGGGGATAATGT 58.481 37.500 0.00 0.00 39.62 2.71
2439 2833 5.907662 TGAGATGGAGAAGGATAGGTTGATT 59.092 40.000 0.00 0.00 0.00 2.57
2475 2869 5.578336 GGCAAATGGCTTTATTCAAGAAGAC 59.422 40.000 0.00 0.00 44.01 3.01
2483 2877 5.851703 GCTTTATTCAAGAAGACGGAACAAC 59.148 40.000 0.00 0.00 33.80 3.32
2484 2878 6.293462 GCTTTATTCAAGAAGACGGAACAACT 60.293 38.462 0.00 0.00 33.80 3.16
2492 2886 7.281324 TCAAGAAGACGGAACAACTGATTTAAA 59.719 33.333 0.00 0.00 0.00 1.52
2508 2902 9.971922 ACTGATTTAAAACAGAAAGGAGAATTG 57.028 29.630 26.64 2.60 37.54 2.32
2523 2917 6.648192 AGGAGAATTGATCTTCGATGAGTTT 58.352 36.000 7.14 0.00 38.86 2.66
2581 2984 9.143155 TGGTACTCAAATCTATTGTCTATGCTA 57.857 33.333 0.00 0.00 0.00 3.49
2585 2988 8.700051 ACTCAAATCTATTGTCTATGCTAGTGT 58.300 33.333 0.00 0.00 0.00 3.55
2646 3052 8.284945 ACTTAATGCATGATCTAGCAAAAGAA 57.715 30.769 26.17 15.08 44.88 2.52
2706 3112 4.652175 GCAGAAAGCATTGTTAAAAGCC 57.348 40.909 0.00 0.00 44.79 4.35
2708 3114 3.121778 CAGAAAGCATTGTTAAAAGCCGC 59.878 43.478 0.00 0.00 30.18 6.53
2710 3116 0.246360 AGCATTGTTAAAAGCCGCCC 59.754 50.000 0.00 0.00 30.18 6.13
2725 3131 1.153784 GCCCGTCACATGCAAATGG 60.154 57.895 0.00 0.00 0.00 3.16
2767 3173 4.818534 ATCAGTATGTTATGCAAAGGCG 57.181 40.909 0.00 0.00 39.60 5.52
2802 3244 3.983044 ACTTTGTTAGCTCCTTCGGAT 57.017 42.857 0.00 0.00 0.00 4.18
2804 3246 4.652822 ACTTTGTTAGCTCCTTCGGATTT 58.347 39.130 0.00 0.00 0.00 2.17
2822 3264 8.842358 TCGGATTTATGGAAGGTATATTGTTC 57.158 34.615 0.00 0.00 0.00 3.18
2839 3305 5.376854 TTGTTCTAATTTTCTGAGCAGGC 57.623 39.130 0.00 0.00 0.00 4.85
2841 3307 4.456911 TGTTCTAATTTTCTGAGCAGGCTG 59.543 41.667 10.94 10.94 0.00 4.85
2870 3336 6.856895 AGGATTTTAAAGAGTTGCTACATGC 58.143 36.000 0.13 0.00 43.25 4.06
2897 3363 5.008316 CAGCATCACTAAGAGCATTGCAATA 59.992 40.000 12.53 0.00 0.00 1.90
3000 3466 5.523369 GTTAGGTTGCCAGATTCAATATGC 58.477 41.667 0.00 0.00 0.00 3.14
3080 3546 3.405831 CAGAAGACATGGCAAGACTGAA 58.594 45.455 0.00 0.00 0.00 3.02
3083 3549 5.048224 CAGAAGACATGGCAAGACTGAAAAT 60.048 40.000 0.00 0.00 0.00 1.82
3124 3590 8.062065 TCTTTTTGGTTGTGTTAGTCTCAAAT 57.938 30.769 0.00 0.00 32.51 2.32
3129 3595 8.458573 TTGGTTGTGTTAGTCTCAAATGTATT 57.541 30.769 0.00 0.00 32.51 1.89
3131 3597 8.908903 TGGTTGTGTTAGTCTCAAATGTATTTT 58.091 29.630 0.00 0.00 32.51 1.82
3139 3605 9.974980 TTAGTCTCAAATGTATTTTTCCAAACC 57.025 29.630 0.00 0.00 0.00 3.27
3164 3630 4.879545 TGGTCTACTGAAAAACCTTCACAC 59.120 41.667 0.00 0.00 32.82 3.82
3182 3649 8.327429 CCTTCACACATTAACAACATTTTTGTC 58.673 33.333 0.00 0.00 0.00 3.18
3186 3653 6.254589 ACACATTAACAACATTTTTGTCGGTG 59.745 34.615 0.00 0.00 0.00 4.94
3280 3747 2.293170 GAGCAAGATAAAGAGTGGGGC 58.707 52.381 0.00 0.00 0.00 5.80
3296 3763 0.244721 GGGCGAATGCAAAAGAAGCT 59.755 50.000 0.00 0.00 45.35 3.74
3303 3770 5.004156 GCGAATGCAAAAGAAGCTAATCTTG 59.996 40.000 1.41 0.00 39.23 3.02
3338 3809 8.397906 CAAAATCTAAGTGAGTTGTTGTTCTCA 58.602 33.333 0.00 0.00 38.20 3.27
3369 3840 3.979347 AGAAATGGATGGTGAGCCTAGAT 59.021 43.478 0.00 0.00 35.27 1.98
3437 3920 7.486647 TCCAAAAACTAGAGATACGTGGATAC 58.513 38.462 0.00 0.00 0.00 2.24
3475 3958 2.353889 CACAATGGATGAGAAAGCCTCG 59.646 50.000 0.00 0.00 44.92 4.63
3489 3972 0.101219 GCCTCGGATGTTTGATTGCC 59.899 55.000 0.00 0.00 0.00 4.52
3605 4095 4.460263 TGGATAACCTGACCACATTATGC 58.540 43.478 0.00 0.00 37.04 3.14
3628 4118 2.957402 AACCTTGATGTGGAAGCTGA 57.043 45.000 0.00 0.00 0.00 4.26
3629 4119 3.446442 AACCTTGATGTGGAAGCTGAT 57.554 42.857 0.00 0.00 0.00 2.90
3689 4179 4.841422 AGAGGATGGAGTTGATTGAGTTG 58.159 43.478 0.00 0.00 0.00 3.16
3728 4218 3.561313 GGGCAGAAAATAGTGTGGGAGAA 60.561 47.826 0.00 0.00 0.00 2.87
3739 4229 4.884961 AGTGTGGGAGAACCTAGTGATAT 58.115 43.478 0.00 0.00 41.11 1.63
3744 4234 5.598830 GTGGGAGAACCTAGTGATATCTTGA 59.401 44.000 3.98 0.00 41.11 3.02
3763 4253 3.213506 TGATAATGTTCCCGATGCTTGG 58.786 45.455 0.00 0.00 0.00 3.61
3806 4296 1.133025 CCCAAGCTTGCAAGTATTCCG 59.867 52.381 26.55 13.40 0.00 4.30
3823 4313 0.694771 CCGGTGATCCCCATCATCAT 59.305 55.000 0.00 0.00 39.86 2.45
3836 4326 5.241064 CCCCATCATCATCAACTTGAGAATC 59.759 44.000 0.00 0.00 0.00 2.52
3875 4365 8.090214 AGTAGTGCAGTCGGTTTAGTTTTTATA 58.910 33.333 0.00 0.00 0.00 0.98
3915 4405 3.797039 TGGCCATTTCTCGTCAGATTAG 58.203 45.455 0.00 0.00 0.00 1.73
3925 4415 2.832129 TCGTCAGATTAGCTCTTGGGTT 59.168 45.455 0.00 0.00 29.16 4.11
3926 4416 2.932614 CGTCAGATTAGCTCTTGGGTTG 59.067 50.000 0.00 0.00 29.16 3.77
3949 4439 2.308570 AGGAAGACATACCCATGTTGCA 59.691 45.455 0.00 0.00 45.58 4.08
3968 4458 0.905357 ATCTAGACGCCCAGCAAAGT 59.095 50.000 0.00 0.00 0.00 2.66
3989 4479 5.119694 AGTCAAAGTCAAAGACCTCTTGAC 58.880 41.667 19.26 19.26 41.76 3.18
4008 4498 7.715657 TCTTGACAAACTGAAGCATTTGTATT 58.284 30.769 2.54 0.00 46.40 1.89
4091 4582 3.664025 GGAAATGCTTTTCGTTCGTGAAG 59.336 43.478 16.31 0.18 41.84 3.02
4108 4599 2.642311 TGAAGGGGCTGACAATTAGTGA 59.358 45.455 0.00 0.00 0.00 3.41
4146 4637 1.842920 TGGCCAACAGAGGAGCTCA 60.843 57.895 17.19 0.00 32.06 4.26
4151 4642 0.683973 CAACAGAGGAGCTCAGGTGT 59.316 55.000 17.19 11.86 31.47 4.16
4169 4660 1.017387 GTTTGGATAGCCTCCGCTTG 58.983 55.000 0.00 0.00 45.55 4.01
4187 4678 4.849926 CGCTTGCTGTATATCATGAATTGC 59.150 41.667 0.00 0.00 0.00 3.56
4188 4679 5.561339 CGCTTGCTGTATATCATGAATTGCA 60.561 40.000 0.00 2.41 0.00 4.08
4205 4696 3.634397 TGCAACAATCTAGAGGGGAAG 57.366 47.619 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 39 5.467735 GCTAGAGACTCTGCTACTTACTACC 59.532 48.000 15.55 0.00 0.00 3.18
51 55 5.294799 TCAGTTTCAGTCTATCGCTAGAGAC 59.705 44.000 4.93 4.93 43.04 3.36
52 56 5.429130 TCAGTTTCAGTCTATCGCTAGAGA 58.571 41.667 0.00 0.00 34.63 3.10
53 57 5.277779 CCTCAGTTTCAGTCTATCGCTAGAG 60.278 48.000 0.00 0.00 34.63 2.43
54 58 4.576873 CCTCAGTTTCAGTCTATCGCTAGA 59.423 45.833 0.00 0.00 0.00 2.43
55 59 4.576873 TCCTCAGTTTCAGTCTATCGCTAG 59.423 45.833 0.00 0.00 0.00 3.42
76 80 1.067495 CAGAAGTGAGAAGTCCCGTCC 60.067 57.143 0.00 0.00 0.00 4.79
79 83 0.969894 ACCAGAAGTGAGAAGTCCCG 59.030 55.000 0.00 0.00 0.00 5.14
100 104 4.288366 TGGTGGAACAGATATCAGTTTCCA 59.712 41.667 20.60 20.60 41.80 3.53
134 138 9.909644 GAGTAAGATTAATTATCTCCAGCGTAA 57.090 33.333 0.00 0.00 42.90 3.18
220 224 8.300286 CCTCTAGAGCTTACATCATCGAATAAA 58.700 37.037 14.73 0.00 0.00 1.40
221 225 7.448777 ACCTCTAGAGCTTACATCATCGAATAA 59.551 37.037 14.73 0.00 0.00 1.40
222 226 6.943146 ACCTCTAGAGCTTACATCATCGAATA 59.057 38.462 14.73 0.00 0.00 1.75
223 227 5.772672 ACCTCTAGAGCTTACATCATCGAAT 59.227 40.000 14.73 0.00 0.00 3.34
224 228 5.133941 ACCTCTAGAGCTTACATCATCGAA 58.866 41.667 14.73 0.00 0.00 3.71
225 229 4.720046 ACCTCTAGAGCTTACATCATCGA 58.280 43.478 14.73 0.00 0.00 3.59
226 230 5.935206 TCTACCTCTAGAGCTTACATCATCG 59.065 44.000 14.73 0.00 0.00 3.84
227 231 7.165485 TCTCTACCTCTAGAGCTTACATCATC 58.835 42.308 14.73 0.00 44.19 2.92
228 232 7.085476 TCTCTACCTCTAGAGCTTACATCAT 57.915 40.000 14.73 0.00 44.19 2.45
229 233 6.502074 TCTCTACCTCTAGAGCTTACATCA 57.498 41.667 14.73 0.00 44.19 3.07
230 234 7.996098 ATTCTCTACCTCTAGAGCTTACATC 57.004 40.000 14.73 0.00 44.19 3.06
231 235 8.001875 TCAATTCTCTACCTCTAGAGCTTACAT 58.998 37.037 14.73 0.00 44.19 2.29
232 236 7.347252 TCAATTCTCTACCTCTAGAGCTTACA 58.653 38.462 14.73 0.00 44.19 2.41
233 237 7.501225 ACTCAATTCTCTACCTCTAGAGCTTAC 59.499 40.741 14.73 0.00 44.19 2.34
234 238 7.579105 ACTCAATTCTCTACCTCTAGAGCTTA 58.421 38.462 14.73 6.68 44.19 3.09
235 239 6.431722 ACTCAATTCTCTACCTCTAGAGCTT 58.568 40.000 14.73 5.82 44.19 3.74
236 240 6.013554 ACTCAATTCTCTACCTCTAGAGCT 57.986 41.667 14.73 3.26 44.19 4.09
237 241 6.546034 AGAACTCAATTCTCTACCTCTAGAGC 59.454 42.308 14.73 0.00 44.99 4.09
302 307 6.569994 GCAAGAAAATTCTGAAGATGCAGTCT 60.570 38.462 10.40 0.00 36.53 3.24
305 310 4.557690 CGCAAGAAAATTCTGAAGATGCAG 59.442 41.667 13.94 0.00 36.39 4.41
358 367 7.121759 CCAGAAATCTCATAAGCAGGAAAGAAA 59.878 37.037 0.00 0.00 0.00 2.52
375 384 4.515567 GGACGAACTGAAAACCAGAAATCT 59.484 41.667 0.00 0.00 45.78 2.40
391 400 1.374758 CCACTGCTCCAGGACGAAC 60.375 63.158 0.00 0.00 35.51 3.95
416 425 8.947304 AATTTGCTTTGTAACTTGTTTTTGTG 57.053 26.923 0.00 0.00 0.00 3.33
478 489 7.885399 GGTGGCCTCTCATTATTTATCTACAAT 59.115 37.037 3.32 0.00 0.00 2.71
482 493 5.046591 CCGGTGGCCTCTCATTATTTATCTA 60.047 44.000 3.32 0.00 0.00 1.98
484 495 4.003648 CCGGTGGCCTCTCATTATTTATC 58.996 47.826 3.32 0.00 0.00 1.75
516 527 6.786959 AGAAGGAATCCAAGAGCTACTGATAT 59.213 38.462 0.61 0.00 0.00 1.63
553 848 0.258774 AGCTGTGTGTTCCCCTGTTT 59.741 50.000 0.00 0.00 0.00 2.83
554 849 0.179018 GAGCTGTGTGTTCCCCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
562 857 3.195610 TGGAGATAATCGAGCTGTGTGTT 59.804 43.478 0.00 0.00 0.00 3.32
563 858 2.760650 TGGAGATAATCGAGCTGTGTGT 59.239 45.455 0.00 0.00 0.00 3.72
584 879 8.514533 TTACCAGTGGCCCTTACTTTATATAT 57.485 34.615 9.78 0.00 0.00 0.86
585 880 7.569858 ACTTACCAGTGGCCCTTACTTTATATA 59.430 37.037 9.78 0.00 0.00 0.86
593 888 2.417787 CGTACTTACCAGTGGCCCTTAC 60.418 54.545 9.78 5.37 34.06 2.34
596 891 0.251922 TCGTACTTACCAGTGGCCCT 60.252 55.000 9.78 0.00 34.06 5.19
609 904 5.736492 GCTGAGTTGTATATTGCCTCGTACT 60.736 44.000 0.00 0.00 0.00 2.73
646 941 4.104383 TGGGCAAATGGAGATAAGATCC 57.896 45.455 0.00 0.00 37.35 3.36
669 979 1.249407 GGTTTGGGATTGTGCGGTTA 58.751 50.000 0.00 0.00 0.00 2.85
685 1038 2.555547 GCGTCAAGGCTGCTTGGTT 61.556 57.895 0.00 0.00 35.23 3.67
705 1064 1.080230 CGGCCCTATGCAGATCTCG 60.080 63.158 0.00 0.00 43.89 4.04
806 1174 4.690748 TCGATGAAGAGCAAAACAAGGTAG 59.309 41.667 0.00 0.00 0.00 3.18
843 1216 3.756933 TGGTCCGTACAGCTAAAAAGT 57.243 42.857 0.00 0.00 0.00 2.66
880 1256 9.680315 AGCTCTCGTACATACTTTTTGATATAC 57.320 33.333 0.00 0.00 0.00 1.47
900 1278 7.061673 CACAATAGCTTCGATTGTATAGCTCTC 59.938 40.741 10.18 0.00 43.91 3.20
913 1291 7.342769 TCTTATAGTTCCACAATAGCTTCGA 57.657 36.000 0.00 0.00 0.00 3.71
956 1334 3.332485 TGGCTTACCACCTTGTAATCCTT 59.668 43.478 5.67 0.00 42.67 3.36
980 1358 2.957402 TGTGCTCCCAGATTCAAAGT 57.043 45.000 0.00 0.00 0.00 2.66
1066 1444 3.894759 ACTGCAGCATATGAAGGAACAT 58.105 40.909 15.27 0.00 39.18 2.71
1089 1473 5.224821 TCTTGCAGATCAGAGGAATATGG 57.775 43.478 0.00 0.00 0.00 2.74
1191 1575 4.002506 TCGAGGCCACACATGCGT 62.003 61.111 5.01 0.00 0.00 5.24
1218 1602 4.081185 TGGCGCTCCAGCATTCGA 62.081 61.111 7.64 0.00 42.21 3.71
1249 1633 2.337532 GTTGGCCAGCTTGCACTG 59.662 61.111 13.08 0.00 37.42 3.66
1269 1653 1.633774 TTGTCTCACTCCTGTCCTCC 58.366 55.000 0.00 0.00 0.00 4.30
1275 1659 2.802787 AGTCGTTTGTCTCACTCCTG 57.197 50.000 0.00 0.00 0.00 3.86
1566 1953 3.512516 GTCTGCCGCCAAGGATGC 61.513 66.667 0.00 0.00 45.00 3.91
1628 2015 7.301054 CAACTTCACAACCATCTTCTTATCAC 58.699 38.462 0.00 0.00 0.00 3.06
1639 2026 1.338973 CAGCAGCAACTTCACAACCAT 59.661 47.619 0.00 0.00 0.00 3.55
1644 2031 0.819259 GGTCCAGCAGCAACTTCACA 60.819 55.000 0.00 0.00 0.00 3.58
1669 2056 2.110967 CCTGCACCTTCCGCTGATG 61.111 63.158 0.00 0.00 0.00 3.07
1749 2136 3.319137 TGGTCTTGGATCTCTTTGTCG 57.681 47.619 0.00 0.00 0.00 4.35
1753 2140 5.222213 ACTGGAAATGGTCTTGGATCTCTTT 60.222 40.000 0.00 0.00 0.00 2.52
1767 2154 3.367703 GCCACATCTTCAACTGGAAATGG 60.368 47.826 0.00 0.00 34.44 3.16
1833 2220 9.603921 CTTCCATTTGTAGCCAATTCAATTATT 57.396 29.630 0.00 0.00 0.00 1.40
1875 2262 5.808042 TCTTCTGCAATAGTTCAATGCTC 57.192 39.130 0.00 0.00 40.66 4.26
1917 2304 6.146184 CGAGAACAAGTAAAAATCTCTGCTGA 59.854 38.462 0.00 0.00 35.50 4.26
1921 2308 8.244494 TCATCGAGAACAAGTAAAAATCTCTG 57.756 34.615 0.00 0.00 35.50 3.35
1971 2359 4.043310 AGTGACTTCAATTCATCCTCCCAA 59.957 41.667 0.00 0.00 0.00 4.12
2037 2425 1.859998 GCCACTTGCTTGTTTCGACAC 60.860 52.381 0.00 0.00 36.87 3.67
2045 2433 4.080356 TCATTATAGAGGCCACTTGCTTGT 60.080 41.667 8.39 0.00 40.92 3.16
2068 2456 1.378514 CATGGGGCTTAACGGTGCT 60.379 57.895 0.00 0.00 0.00 4.40
2101 2489 4.868172 ATTCCCATGAATCCTCTTCACA 57.132 40.909 0.00 0.00 36.45 3.58
2109 2497 5.920193 TCAAGAACAATTCCCATGAATCC 57.080 39.130 0.00 0.00 40.34 3.01
2127 2515 4.319911 CCATTGCCAAATGCTTTGTTCAAG 60.320 41.667 7.53 0.00 41.66 3.02
2129 2517 3.139850 CCATTGCCAAATGCTTTGTTCA 58.860 40.909 7.53 3.70 41.66 3.18
2151 2539 5.609423 ACTAAATCTGCTTGCTCCTCTATG 58.391 41.667 0.00 0.00 0.00 2.23
2152 2540 5.365025 TGACTAAATCTGCTTGCTCCTCTAT 59.635 40.000 0.00 0.00 0.00 1.98
2169 2563 1.404986 CGCCTTCCGATGGTGACTAAA 60.405 52.381 7.92 0.00 40.02 1.85
2197 2591 1.363807 GCAAGCCCCCGCATTTATC 59.636 57.895 0.00 0.00 37.52 1.75
2287 2681 6.275335 CAACATTATCCCCAATGCTACTTTG 58.725 40.000 0.00 0.00 39.13 2.77
2294 2688 2.629617 CCTCCAACATTATCCCCAATGC 59.370 50.000 0.00 0.00 39.13 3.56
2309 2703 4.209538 CATGACCTCATATTTGCCTCCAA 58.790 43.478 0.00 0.00 34.26 3.53
2439 2833 2.694628 GCCATTTGCCATCCATAGTTGA 59.305 45.455 0.00 0.00 0.00 3.18
2475 2869 7.167468 CCTTTCTGTTTTAAATCAGTTGTTCCG 59.833 37.037 20.47 8.01 33.89 4.30
2492 2886 6.467677 TCGAAGATCAATTCTCCTTTCTGTT 58.532 36.000 0.00 0.00 31.78 3.16
2508 2902 5.163814 CCTCCAAACAAACTCATCGAAGATC 60.164 44.000 0.00 0.00 45.12 2.75
2511 2905 3.815401 ACCTCCAAACAAACTCATCGAAG 59.185 43.478 0.00 0.00 0.00 3.79
2569 2963 5.921962 TCTGTGACACTAGCATAGACAAT 57.078 39.130 7.20 0.00 42.77 2.71
2585 2988 8.753497 ACATACTACTGTCTCATATTCTGTGA 57.247 34.615 0.00 0.00 0.00 3.58
2663 3069 5.183331 TGCTGAGTCAGTTCGTCTATACTTT 59.817 40.000 21.06 0.00 33.43 2.66
2673 3079 1.458827 GCTTTCTGCTGAGTCAGTTCG 59.541 52.381 21.06 9.99 38.95 3.95
2705 3111 2.699768 ATTTGCATGTGACGGGCGG 61.700 57.895 0.00 0.00 0.00 6.13
2706 3112 1.514657 CATTTGCATGTGACGGGCG 60.515 57.895 0.00 0.00 0.00 6.13
2708 3114 1.153784 GCCATTTGCATGTGACGGG 60.154 57.895 0.00 0.00 40.77 5.28
2725 3131 5.984926 TGATTTGTTCCAATTTTGTCTCTGC 59.015 36.000 0.00 0.00 0.00 4.26
2734 3140 9.369904 GCATAACATACTGATTTGTTCCAATTT 57.630 29.630 0.00 0.00 37.29 1.82
2752 3158 2.166829 TGTTCCGCCTTTGCATAACAT 58.833 42.857 0.00 0.00 37.04 2.71
2767 3173 3.671716 ACAAAGTTCGGAGGTATGTTCC 58.328 45.455 0.00 0.00 0.00 3.62
2813 3255 8.840321 GCCTGCTCAGAAAATTAGAACAATATA 58.160 33.333 0.00 0.00 0.00 0.86
2819 3261 4.673841 GCAGCCTGCTCAGAAAATTAGAAC 60.674 45.833 10.04 0.00 40.96 3.01
2822 3264 3.417690 GCAGCCTGCTCAGAAAATTAG 57.582 47.619 10.04 0.00 40.96 1.73
2838 3304 5.635417 ACTCTTTAAAATCCTTGAGCAGC 57.365 39.130 1.05 0.00 0.00 5.25
2839 3305 5.860716 GCAACTCTTTAAAATCCTTGAGCAG 59.139 40.000 1.05 0.00 0.00 4.24
2841 3307 6.018589 AGCAACTCTTTAAAATCCTTGAGC 57.981 37.500 1.05 0.00 0.00 4.26
2843 3309 8.514594 CATGTAGCAACTCTTTAAAATCCTTGA 58.485 33.333 0.00 0.00 0.00 3.02
2870 3336 4.554919 GCAATGCTCTTAGTGATGCTGATG 60.555 45.833 0.00 0.00 0.00 3.07
2912 3378 5.220643 GCATTTATGGCCTTGCAAATGTTAC 60.221 40.000 20.01 7.47 39.47 2.50
2915 3381 3.272581 GCATTTATGGCCTTGCAAATGT 58.727 40.909 20.01 0.00 39.47 2.71
2947 3413 8.637986 GTTAGACCAAGAGATGTCAAGATATCT 58.362 37.037 8.78 8.78 41.15 1.98
3000 3466 7.138081 TCAGTGTTTGCAAGTTATACAACATG 58.862 34.615 0.00 0.00 37.10 3.21
3080 3546 9.595823 CAAAAAGATAAAGATGGATGAGCATTT 57.404 29.630 0.00 0.00 0.00 2.32
3083 3549 6.664816 ACCAAAAAGATAAAGATGGATGAGCA 59.335 34.615 0.00 0.00 0.00 4.26
3139 3605 5.588648 TGTGAAGGTTTTTCAGTAGACCAAG 59.411 40.000 0.00 0.00 34.60 3.61
3164 3630 5.461737 AGCACCGACAAAAATGTTGTTAATG 59.538 36.000 0.00 0.00 31.96 1.90
3182 3649 3.335356 AAGGCCATCTCCAGCACCG 62.335 63.158 5.01 0.00 0.00 4.94
3186 3653 2.004408 ATCCCAAGGCCATCTCCAGC 62.004 60.000 5.01 0.00 0.00 4.85
3280 3747 5.514204 CCAAGATTAGCTTCTTTTGCATTCG 59.486 40.000 0.00 0.00 33.69 3.34
3296 3763 8.862325 TTAGATTTTGCTTCTGACCAAGATTA 57.138 30.769 0.00 0.00 33.93 1.75
3303 3770 5.703130 ACTCACTTAGATTTTGCTTCTGACC 59.297 40.000 0.00 0.00 0.00 4.02
3338 3809 2.315763 ACCATCCATTTCTTGGTCCCAT 59.684 45.455 0.00 0.00 46.52 4.00
3358 3829 5.069781 ACTTCTTCCACATATCTAGGCTCAC 59.930 44.000 0.00 0.00 0.00 3.51
3369 3840 5.680619 ACACTGAAACACTTCTTCCACATA 58.319 37.500 0.00 0.00 32.33 2.29
3422 3905 3.006967 GGCCATTGTATCCACGTATCTCT 59.993 47.826 0.00 0.00 0.00 3.10
3437 3920 6.491062 TCCATTGTGATATTTCTAGGCCATTG 59.509 38.462 5.01 0.00 0.00 2.82
3438 3921 6.613699 TCCATTGTGATATTTCTAGGCCATT 58.386 36.000 5.01 0.00 0.00 3.16
3475 3958 3.614092 TCTCTCAGGCAATCAAACATCC 58.386 45.455 0.00 0.00 0.00 3.51
3511 3994 2.531522 ACTCTTGCATTTTGGGCAAC 57.468 45.000 0.00 0.00 45.57 4.17
3605 4095 3.438087 CAGCTTCCACATCAAGGTTACTG 59.562 47.826 0.00 0.00 28.96 2.74
3628 4118 3.731431 TGTAGAGGGGTAATGTGTCCAT 58.269 45.455 0.00 0.00 0.00 3.41
3629 4119 3.193395 TGTAGAGGGGTAATGTGTCCA 57.807 47.619 0.00 0.00 0.00 4.02
3689 4179 0.466922 CCCACATCTCCAGGATTGGC 60.467 60.000 0.00 0.00 44.63 4.52
3728 4218 8.598041 GGGAACATTATCAAGATATCACTAGGT 58.402 37.037 5.32 0.00 0.00 3.08
3739 4229 4.422073 AGCATCGGGAACATTATCAAGA 57.578 40.909 0.00 0.00 0.00 3.02
3744 4234 3.136443 TCTCCAAGCATCGGGAACATTAT 59.864 43.478 0.00 0.00 31.58 1.28
3763 4253 4.436183 GGCACTTTTTGATCGTTAGCTCTC 60.436 45.833 0.00 0.00 0.00 3.20
3806 4296 3.152341 GTTGATGATGATGGGGATCACC 58.848 50.000 7.20 7.20 32.68 4.02
3823 4313 6.298361 TGAACTCCAATGATTCTCAAGTTGA 58.702 36.000 5.25 5.25 27.53 3.18
3836 4326 5.423015 ACTGCACTACTATGAACTCCAATG 58.577 41.667 0.00 0.00 0.00 2.82
3853 4343 6.540205 CCTATAAAAACTAAACCGACTGCAC 58.460 40.000 0.00 0.00 0.00 4.57
3875 4365 1.000396 GGAGCCCAAACAGATGCCT 60.000 57.895 0.00 0.00 0.00 4.75
3915 4405 0.250901 TCTTCCTGCAACCCAAGAGC 60.251 55.000 0.00 0.00 0.00 4.09
3925 4415 1.915489 ACATGGGTATGTCTTCCTGCA 59.085 47.619 0.00 0.00 44.00 4.41
3926 4416 2.684881 CAACATGGGTATGTCTTCCTGC 59.315 50.000 0.00 0.00 46.54 4.85
3949 4439 0.905357 ACTTTGCTGGGCGTCTAGAT 59.095 50.000 3.86 0.00 0.00 1.98
3968 4458 5.097742 TGTCAAGAGGTCTTTGACTTTGA 57.902 39.130 16.27 0.00 36.21 2.69
3989 4479 7.095523 CCTTCCAAATACAAATGCTTCAGTTTG 60.096 37.037 0.00 0.00 40.29 2.93
4008 4498 2.203625 GCTGTTGGGGCCTTCCAA 60.204 61.111 9.24 9.24 43.82 3.53
4091 4582 2.099756 GCATTCACTAATTGTCAGCCCC 59.900 50.000 0.00 0.00 0.00 5.80
4169 4660 8.080417 AGATTGTTGCAATTCATGATATACAGC 58.920 33.333 0.59 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.