Multiple sequence alignment - TraesCS7D01G017100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G017100 chr7D 100.000 3452 0 0 1 3452 7493387 7496838 0.000000e+00 6375
1 TraesCS7D01G017100 chr7D 77.358 424 79 13 2979 3395 451868280 451868693 5.760000e-58 235
2 TraesCS7D01G017100 chr4A 92.000 2025 106 20 520 2530 732813074 732815056 0.000000e+00 2791
3 TraesCS7D01G017100 chr4A 89.534 1051 67 11 1490 2534 731973572 731972559 0.000000e+00 1291
4 TraesCS7D01G017100 chr4A 95.027 744 28 4 663 1404 731985022 731984286 0.000000e+00 1160
5 TraesCS7D01G017100 chr4A 94.260 453 12 1 1 439 732806549 732807001 0.000000e+00 680
6 TraesCS7D01G017100 chr4A 84.472 483 34 16 2739 3218 732815354 732815798 4.090000e-119 438
7 TraesCS7D01G017100 chr4A 88.502 287 29 3 2755 3040 731966758 731966475 9.170000e-91 344
8 TraesCS7D01G017100 chr4A 89.655 116 5 5 2610 2725 731972158 731972050 1.290000e-29 141
9 TraesCS7D01G017100 chr4A 90.265 113 4 5 2613 2725 732815262 732815367 1.290000e-29 141
10 TraesCS7D01G017100 chr7A 92.290 1777 105 13 680 2436 8528763 8530527 0.000000e+00 2494
11 TraesCS7D01G017100 chr7A 94.282 717 34 3 2736 3452 8530849 8531558 0.000000e+00 1090
12 TraesCS7D01G017100 chr7A 91.849 503 27 10 932 1432 8525672 8526162 0.000000e+00 689
13 TraesCS7D01G017100 chr7A 91.892 111 2 2 2610 2719 8530756 8530860 7.720000e-32 148
14 TraesCS7D01G017100 chr7A 91.463 82 6 1 2459 2540 8530523 8530603 1.010000e-20 111
15 TraesCS7D01G017100 chr6B 82.887 672 84 15 2806 3452 29070115 29069450 2.990000e-160 575
16 TraesCS7D01G017100 chr6B 86.082 194 27 0 2783 2976 710378333 710378526 3.490000e-50 209
17 TraesCS7D01G017100 chr7B 82.319 690 92 18 2788 3452 233369406 233370090 3.870000e-159 571
18 TraesCS7D01G017100 chr5A 82.003 689 90 7 2783 3445 380046435 380045755 3.890000e-154 555
19 TraesCS7D01G017100 chr5A 79.873 631 97 14 2783 3388 562426087 562426712 5.290000e-118 435
20 TraesCS7D01G017100 chr5D 81.178 696 93 15 2783 3452 287746162 287745479 3.050000e-145 525
21 TraesCS7D01G017100 chr1B 80.946 698 99 14 2784 3452 372984120 372983428 3.950000e-144 521
22 TraesCS7D01G017100 chr2A 80.292 685 98 16 2783 3435 421424342 421425021 1.860000e-132 483
23 TraesCS7D01G017100 chr1D 80.000 695 94 20 2784 3452 273186501 273185826 4.030000e-129 472
24 TraesCS7D01G017100 chr1D 87.755 196 22 2 2783 2976 381962576 381962381 9.640000e-56 228
25 TraesCS7D01G017100 chr3D 78.038 683 108 21 2783 3452 3983919 3983266 3.230000e-105 392
26 TraesCS7D01G017100 chr3D 74.627 804 140 44 1534 2299 512908182 512908959 2.600000e-76 296
27 TraesCS7D01G017100 chr6D 77.681 690 104 24 2785 3435 27479003 27479681 3.250000e-100 375
28 TraesCS7D01G017100 chr6D 86.598 194 26 0 2783 2976 465494176 465494369 7.500000e-52 215
29 TraesCS7D01G017100 chr5B 76.700 691 128 11 2788 3452 127427008 127427691 1.520000e-93 353
30 TraesCS7D01G017100 chr5B 87.435 191 23 1 2785 2975 402790284 402790473 5.800000e-53 219
31 TraesCS7D01G017100 chr3B 73.823 913 149 51 1534 2401 675559914 675560781 2.620000e-71 279
32 TraesCS7D01G017100 chr6A 87.629 194 24 0 2783 2976 611957198 611957391 3.470000e-55 226
33 TraesCS7D01G017100 chr3A 73.072 791 137 44 1544 2299 648493911 648494660 9.710000e-51 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G017100 chr7D 7493387 7496838 3451 False 6375.000000 6375 100.000000 1 3452 1 chr7D.!!$F1 3451
1 TraesCS7D01G017100 chr4A 731984286 731985022 736 True 1160.000000 1160 95.027000 663 1404 1 chr4A.!!$R2 741
2 TraesCS7D01G017100 chr4A 732813074 732815798 2724 False 1123.333333 2791 88.912333 520 3218 3 chr4A.!!$F2 2698
3 TraesCS7D01G017100 chr4A 731972050 731973572 1522 True 716.000000 1291 89.594500 1490 2725 2 chr4A.!!$R3 1235
4 TraesCS7D01G017100 chr7A 8525672 8531558 5886 False 906.400000 2494 92.355200 680 3452 5 chr7A.!!$F1 2772
5 TraesCS7D01G017100 chr6B 29069450 29070115 665 True 575.000000 575 82.887000 2806 3452 1 chr6B.!!$R1 646
6 TraesCS7D01G017100 chr7B 233369406 233370090 684 False 571.000000 571 82.319000 2788 3452 1 chr7B.!!$F1 664
7 TraesCS7D01G017100 chr5A 380045755 380046435 680 True 555.000000 555 82.003000 2783 3445 1 chr5A.!!$R1 662
8 TraesCS7D01G017100 chr5A 562426087 562426712 625 False 435.000000 435 79.873000 2783 3388 1 chr5A.!!$F1 605
9 TraesCS7D01G017100 chr5D 287745479 287746162 683 True 525.000000 525 81.178000 2783 3452 1 chr5D.!!$R1 669
10 TraesCS7D01G017100 chr1B 372983428 372984120 692 True 521.000000 521 80.946000 2784 3452 1 chr1B.!!$R1 668
11 TraesCS7D01G017100 chr2A 421424342 421425021 679 False 483.000000 483 80.292000 2783 3435 1 chr2A.!!$F1 652
12 TraesCS7D01G017100 chr1D 273185826 273186501 675 True 472.000000 472 80.000000 2784 3452 1 chr1D.!!$R1 668
13 TraesCS7D01G017100 chr3D 3983266 3983919 653 True 392.000000 392 78.038000 2783 3452 1 chr3D.!!$R1 669
14 TraesCS7D01G017100 chr3D 512908182 512908959 777 False 296.000000 296 74.627000 1534 2299 1 chr3D.!!$F1 765
15 TraesCS7D01G017100 chr6D 27479003 27479681 678 False 375.000000 375 77.681000 2785 3435 1 chr6D.!!$F1 650
16 TraesCS7D01G017100 chr5B 127427008 127427691 683 False 353.000000 353 76.700000 2788 3452 1 chr5B.!!$F1 664
17 TraesCS7D01G017100 chr3B 675559914 675560781 867 False 279.000000 279 73.823000 1534 2401 1 chr3B.!!$F1 867
18 TraesCS7D01G017100 chr3A 648493911 648494660 749 False 211.000000 211 73.072000 1544 2299 1 chr3A.!!$F1 755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.031616 CCCCCTCTAGCTCTCCTGTT 60.032 60.0 0.00 0.0 0.00 3.16 F
670 672 0.100503 AAAGTGCACGCAGAAACACC 59.899 50.0 12.01 0.0 33.46 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 4319 0.391130 CCTGCACGCCTGTTAGCTTA 60.391 55.0 0.0 0.0 0.0 3.09 R
2607 5362 0.028642 AGCCATCCCCCTTCCTATGT 60.029 55.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.815398 TGCTAATTGTGCTTGATTTATGTTG 57.185 32.000 6.78 0.00 0.00 3.33
30 31 7.377398 TGCTAATTGTGCTTGATTTATGTTGT 58.623 30.769 6.78 0.00 0.00 3.32
31 32 7.871973 TGCTAATTGTGCTTGATTTATGTTGTT 59.128 29.630 6.78 0.00 0.00 2.83
32 33 8.711457 GCTAATTGTGCTTGATTTATGTTGTTT 58.289 29.630 0.00 0.00 0.00 2.83
35 36 8.761575 ATTGTGCTTGATTTATGTTGTTTAGG 57.238 30.769 0.00 0.00 0.00 2.69
36 37 7.283625 TGTGCTTGATTTATGTTGTTTAGGT 57.716 32.000 0.00 0.00 0.00 3.08
37 38 7.367285 TGTGCTTGATTTATGTTGTTTAGGTC 58.633 34.615 0.00 0.00 0.00 3.85
38 39 7.013750 TGTGCTTGATTTATGTTGTTTAGGTCA 59.986 33.333 0.00 0.00 0.00 4.02
39 40 7.865385 GTGCTTGATTTATGTTGTTTAGGTCAA 59.135 33.333 0.00 0.00 0.00 3.18
41 42 9.423061 GCTTGATTTATGTTGTTTAGGTCAAAT 57.577 29.630 0.00 0.00 0.00 2.32
48 49 9.743057 TTATGTTGTTTAGGTCAAATGTTTGAG 57.257 29.630 8.34 0.00 46.80 3.02
49 50 6.568869 TGTTGTTTAGGTCAAATGTTTGAGG 58.431 36.000 8.34 0.00 46.80 3.86
51 52 5.205056 TGTTTAGGTCAAATGTTTGAGGGT 58.795 37.500 8.34 0.21 46.80 4.34
52 53 5.659079 TGTTTAGGTCAAATGTTTGAGGGTT 59.341 36.000 8.34 0.00 46.80 4.11
53 54 5.782893 TTAGGTCAAATGTTTGAGGGTTG 57.217 39.130 8.34 0.00 46.80 3.77
55 56 4.030216 AGGTCAAATGTTTGAGGGTTGTT 58.970 39.130 8.34 0.00 46.80 2.83
56 57 4.099419 AGGTCAAATGTTTGAGGGTTGTTC 59.901 41.667 8.34 0.00 46.80 3.18
57 58 4.099419 GGTCAAATGTTTGAGGGTTGTTCT 59.901 41.667 8.34 0.00 46.80 3.01
58 59 5.281727 GTCAAATGTTTGAGGGTTGTTCTC 58.718 41.667 8.34 0.00 46.80 2.87
59 60 4.952957 TCAAATGTTTGAGGGTTGTTCTCA 59.047 37.500 4.16 0.00 41.88 3.27
60 61 5.420421 TCAAATGTTTGAGGGTTGTTCTCAA 59.580 36.000 4.16 2.80 45.93 3.02
61 62 4.918810 ATGTTTGAGGGTTGTTCTCAAC 57.081 40.909 6.08 2.93 46.84 3.18
62 63 6.848364 CAAATGTTTGAGGGTTGTTCTCAACA 60.848 38.462 12.09 8.18 46.84 3.33
63 64 8.111959 CAAATGTTTGAGGGTTGTTCTCAACAT 61.112 37.037 12.09 9.68 46.84 2.71
81 82 8.792633 TCTCAACATCCAAAATTATTTTCTCGT 58.207 29.630 0.00 0.00 0.00 4.18
82 83 8.741101 TCAACATCCAAAATTATTTTCTCGTG 57.259 30.769 0.00 1.18 0.00 4.35
83 84 8.356657 TCAACATCCAAAATTATTTTCTCGTGT 58.643 29.630 0.00 1.73 0.00 4.49
84 85 8.977505 CAACATCCAAAATTATTTTCTCGTGTT 58.022 29.630 0.00 6.95 0.00 3.32
87 88 9.410556 CATCCAAAATTATTTTCTCGTGTTCTT 57.589 29.630 0.00 0.00 0.00 2.52
89 90 8.625651 TCCAAAATTATTTTCTCGTGTTCTTGA 58.374 29.630 0.00 0.00 0.00 3.02
90 91 9.410556 CCAAAATTATTTTCTCGTGTTCTTGAT 57.589 29.630 0.00 0.00 0.00 2.57
92 93 9.965824 AAAATTATTTTCTCGTGTTCTTGATGT 57.034 25.926 0.00 0.00 0.00 3.06
93 94 9.612620 AAATTATTTTCTCGTGTTCTTGATGTC 57.387 29.630 0.00 0.00 0.00 3.06
94 95 7.962964 TTATTTTCTCGTGTTCTTGATGTCT 57.037 32.000 0.00 0.00 0.00 3.41
95 96 5.907197 TTTTCTCGTGTTCTTGATGTCTC 57.093 39.130 0.00 0.00 0.00 3.36
98 99 1.067846 TCGTGTTCTTGATGTCTCCGG 60.068 52.381 0.00 0.00 0.00 5.14
100 101 2.767505 GTGTTCTTGATGTCTCCGGTT 58.232 47.619 0.00 0.00 0.00 4.44
101 102 2.737252 GTGTTCTTGATGTCTCCGGTTC 59.263 50.000 0.00 0.00 0.00 3.62
104 105 4.466370 TGTTCTTGATGTCTCCGGTTCTAT 59.534 41.667 0.00 0.00 0.00 1.98
105 106 4.920640 TCTTGATGTCTCCGGTTCTATC 57.079 45.455 0.00 3.03 0.00 2.08
107 108 3.026707 TGATGTCTCCGGTTCTATCCA 57.973 47.619 0.00 0.00 0.00 3.41
108 109 2.959030 TGATGTCTCCGGTTCTATCCAG 59.041 50.000 0.00 0.00 0.00 3.86
109 110 2.526888 TGTCTCCGGTTCTATCCAGT 57.473 50.000 0.00 0.00 0.00 4.00
110 111 3.657398 TGTCTCCGGTTCTATCCAGTA 57.343 47.619 0.00 0.00 0.00 2.74
111 112 3.552875 TGTCTCCGGTTCTATCCAGTAG 58.447 50.000 0.00 0.00 0.00 2.57
112 113 3.053842 TGTCTCCGGTTCTATCCAGTAGT 60.054 47.826 0.00 0.00 0.00 2.73
114 115 3.053842 TCTCCGGTTCTATCCAGTAGTGT 60.054 47.826 0.00 0.00 0.00 3.55
115 116 3.700038 CTCCGGTTCTATCCAGTAGTGTT 59.300 47.826 0.00 0.00 0.00 3.32
117 118 4.159135 TCCGGTTCTATCCAGTAGTGTTTC 59.841 45.833 0.00 0.00 0.00 2.78
118 119 4.159879 CCGGTTCTATCCAGTAGTGTTTCT 59.840 45.833 0.00 0.00 0.00 2.52
120 121 5.662456 GGTTCTATCCAGTAGTGTTTCTCC 58.338 45.833 0.00 0.00 0.00 3.71
122 123 6.606395 GGTTCTATCCAGTAGTGTTTCTCCTA 59.394 42.308 0.00 0.00 0.00 2.94
124 125 8.529476 GTTCTATCCAGTAGTGTTTCTCCTAAA 58.471 37.037 0.00 0.00 0.00 1.85
125 126 8.840200 TCTATCCAGTAGTGTTTCTCCTAAAT 57.160 34.615 0.00 0.00 0.00 1.40
129 130 8.431910 TCCAGTAGTGTTTCTCCTAAATTAGT 57.568 34.615 0.00 0.00 0.00 2.24
131 132 8.311836 CCAGTAGTGTTTCTCCTAAATTAGTCA 58.688 37.037 0.00 0.00 0.00 3.41
132 133 9.360093 CAGTAGTGTTTCTCCTAAATTAGTCAG 57.640 37.037 0.00 0.00 0.00 3.51
136 137 9.442047 AGTGTTTCTCCTAAATTAGTCAGATTG 57.558 33.333 0.00 0.00 0.00 2.67
137 138 9.220767 GTGTTTCTCCTAAATTAGTCAGATTGT 57.779 33.333 0.00 0.00 0.00 2.71
153 154 9.761504 AGTCAGATTGTTCTATGTATTCTCATG 57.238 33.333 0.00 0.00 0.00 3.07
207 208 9.341078 TGCTTCTAATATGTAAATCAATCAGCA 57.659 29.630 0.00 0.00 0.00 4.41
224 225 0.670162 GCATATCATGGTGGTGTGCC 59.330 55.000 1.06 0.00 0.00 5.01
225 226 0.946528 CATATCATGGTGGTGTGCCG 59.053 55.000 0.00 0.00 37.67 5.69
226 227 0.819259 ATATCATGGTGGTGTGCCGC 60.819 55.000 0.00 0.00 44.31 6.53
238 239 2.202824 TGCCGCCGTGCACTATAC 60.203 61.111 16.19 1.03 36.04 1.47
239 240 2.106332 GCCGCCGTGCACTATACT 59.894 61.111 16.19 0.00 0.00 2.12
240 241 1.949631 GCCGCCGTGCACTATACTC 60.950 63.158 16.19 0.00 0.00 2.59
241 242 1.657487 CCGCCGTGCACTATACTCG 60.657 63.158 16.19 8.50 0.00 4.18
242 243 2.293627 CGCCGTGCACTATACTCGC 61.294 63.158 16.19 3.93 0.00 5.03
243 244 1.065928 GCCGTGCACTATACTCGCT 59.934 57.895 16.19 0.00 0.00 4.93
244 245 1.209275 GCCGTGCACTATACTCGCTG 61.209 60.000 16.19 0.00 0.00 5.18
246 247 1.332686 CCGTGCACTATACTCGCTGTA 59.667 52.381 16.19 0.00 35.37 2.74
247 248 2.602456 CCGTGCACTATACTCGCTGTAG 60.602 54.545 16.19 0.00 34.24 2.74
248 249 2.031807 CGTGCACTATACTCGCTGTAGT 59.968 50.000 16.19 0.00 34.24 2.73
249 250 3.619729 GTGCACTATACTCGCTGTAGTC 58.380 50.000 10.32 0.00 34.24 2.59
251 252 2.030981 GCACTATACTCGCTGTAGTCCC 60.031 54.545 0.00 0.00 34.24 4.46
253 254 2.161030 CTATACTCGCTGTAGTCCCCC 58.839 57.143 0.00 0.00 34.24 5.40
254 255 0.556747 ATACTCGCTGTAGTCCCCCT 59.443 55.000 0.00 0.00 34.24 4.79
256 257 1.076632 CTCGCTGTAGTCCCCCTCT 60.077 63.158 0.00 0.00 0.00 3.69
258 259 0.183014 TCGCTGTAGTCCCCCTCTAG 59.817 60.000 0.00 0.00 0.00 2.43
259 260 1.457009 CGCTGTAGTCCCCCTCTAGC 61.457 65.000 0.00 0.00 0.00 3.42
260 261 0.105913 GCTGTAGTCCCCCTCTAGCT 60.106 60.000 0.00 0.00 32.42 3.32
261 262 1.989706 CTGTAGTCCCCCTCTAGCTC 58.010 60.000 0.00 0.00 0.00 4.09
262 263 1.497286 CTGTAGTCCCCCTCTAGCTCT 59.503 57.143 0.00 0.00 0.00 4.09
263 264 1.495574 TGTAGTCCCCCTCTAGCTCTC 59.504 57.143 0.00 0.00 0.00 3.20
264 265 1.150872 TAGTCCCCCTCTAGCTCTCC 58.849 60.000 0.00 0.00 0.00 3.71
265 266 0.629270 AGTCCCCCTCTAGCTCTCCT 60.629 60.000 0.00 0.00 0.00 3.69
268 269 0.031616 CCCCCTCTAGCTCTCCTGTT 60.032 60.000 0.00 0.00 0.00 3.16
269 270 1.218196 CCCCCTCTAGCTCTCCTGTTA 59.782 57.143 0.00 0.00 0.00 2.41
270 271 2.359355 CCCCCTCTAGCTCTCCTGTTAA 60.359 54.545 0.00 0.00 0.00 2.01
271 272 3.375699 CCCCTCTAGCTCTCCTGTTAAA 58.624 50.000 0.00 0.00 0.00 1.52
272 273 3.970640 CCCCTCTAGCTCTCCTGTTAAAT 59.029 47.826 0.00 0.00 0.00 1.40
273 274 4.039852 CCCCTCTAGCTCTCCTGTTAAATC 59.960 50.000 0.00 0.00 0.00 2.17
275 276 4.651503 CCTCTAGCTCTCCTGTTAAATCCA 59.348 45.833 0.00 0.00 0.00 3.41
276 277 5.452636 CCTCTAGCTCTCCTGTTAAATCCAC 60.453 48.000 0.00 0.00 0.00 4.02
277 278 5.023452 TCTAGCTCTCCTGTTAAATCCACA 58.977 41.667 0.00 0.00 0.00 4.17
278 279 3.944087 AGCTCTCCTGTTAAATCCACAC 58.056 45.455 0.00 0.00 0.00 3.82
279 280 3.010420 GCTCTCCTGTTAAATCCACACC 58.990 50.000 0.00 0.00 0.00 4.16
281 282 3.256704 TCTCCTGTTAAATCCACACCCT 58.743 45.455 0.00 0.00 0.00 4.34
282 283 4.431378 TCTCCTGTTAAATCCACACCCTA 58.569 43.478 0.00 0.00 0.00 3.53
283 284 4.847512 TCTCCTGTTAAATCCACACCCTAA 59.152 41.667 0.00 0.00 0.00 2.69
284 285 5.311121 TCTCCTGTTAAATCCACACCCTAAA 59.689 40.000 0.00 0.00 0.00 1.85
286 287 6.374588 TCCTGTTAAATCCACACCCTAAAAA 58.625 36.000 0.00 0.00 0.00 1.94
287 288 6.265876 TCCTGTTAAATCCACACCCTAAAAAC 59.734 38.462 0.00 0.00 0.00 2.43
288 289 6.408107 TGTTAAATCCACACCCTAAAAACC 57.592 37.500 0.00 0.00 0.00 3.27
289 290 5.304871 TGTTAAATCCACACCCTAAAAACCC 59.695 40.000 0.00 0.00 0.00 4.11
291 292 2.668144 TCCACACCCTAAAAACCCAG 57.332 50.000 0.00 0.00 0.00 4.45
292 293 1.854280 TCCACACCCTAAAAACCCAGT 59.146 47.619 0.00 0.00 0.00 4.00
293 294 1.960689 CCACACCCTAAAAACCCAGTG 59.039 52.381 0.00 0.00 0.00 3.66
295 296 2.621526 CACACCCTAAAAACCCAGTGAC 59.378 50.000 0.00 0.00 0.00 3.67
296 297 2.512476 ACACCCTAAAAACCCAGTGACT 59.488 45.455 0.00 0.00 0.00 3.41
297 298 2.884639 CACCCTAAAAACCCAGTGACTG 59.115 50.000 5.42 5.42 0.00 3.51
307 308 0.904865 CCAGTGACTGGCCAGGAGTA 60.905 60.000 35.42 16.16 45.13 2.59
308 309 0.534412 CAGTGACTGGCCAGGAGTAG 59.466 60.000 35.42 18.57 0.00 2.57
309 310 0.115349 AGTGACTGGCCAGGAGTAGT 59.885 55.000 35.42 15.56 0.00 2.73
310 311 0.977395 GTGACTGGCCAGGAGTAGTT 59.023 55.000 35.42 13.88 0.00 2.24
311 312 1.348036 GTGACTGGCCAGGAGTAGTTT 59.652 52.381 35.42 13.06 0.00 2.66
312 313 1.347707 TGACTGGCCAGGAGTAGTTTG 59.652 52.381 35.42 8.79 0.00 2.93
313 314 0.693049 ACTGGCCAGGAGTAGTTTGG 59.307 55.000 35.42 8.23 35.06 3.28
314 315 0.693049 CTGGCCAGGAGTAGTTTGGT 59.307 55.000 26.14 0.00 34.43 3.67
316 317 1.202879 TGGCCAGGAGTAGTTTGGTTG 60.203 52.381 0.00 0.00 34.43 3.77
317 318 0.881796 GCCAGGAGTAGTTTGGTTGC 59.118 55.000 0.00 0.00 34.43 4.17
319 320 1.202879 CCAGGAGTAGTTTGGTTGCCA 60.203 52.381 0.00 0.00 0.00 4.92
320 321 2.582052 CAGGAGTAGTTTGGTTGCCAA 58.418 47.619 0.00 0.00 42.29 4.52
321 322 3.157087 CAGGAGTAGTTTGGTTGCCAAT 58.843 45.455 1.09 0.00 43.55 3.16
322 323 4.331968 CAGGAGTAGTTTGGTTGCCAATA 58.668 43.478 1.09 0.00 43.55 1.90
323 324 4.949856 CAGGAGTAGTTTGGTTGCCAATAT 59.050 41.667 1.09 0.00 43.55 1.28
325 326 6.772716 CAGGAGTAGTTTGGTTGCCAATATAT 59.227 38.462 1.09 0.00 43.55 0.86
326 327 7.936847 CAGGAGTAGTTTGGTTGCCAATATATA 59.063 37.037 1.09 0.00 43.55 0.86
327 328 7.937394 AGGAGTAGTTTGGTTGCCAATATATAC 59.063 37.037 1.09 3.69 43.55 1.47
329 330 8.446599 AGTAGTTTGGTTGCCAATATATACAC 57.553 34.615 1.09 0.00 43.55 2.90
330 331 8.272173 AGTAGTTTGGTTGCCAATATATACACT 58.728 33.333 1.09 3.47 43.55 3.55
332 333 6.546034 AGTTTGGTTGCCAATATATACACTCC 59.454 38.462 1.09 0.00 43.55 3.85
333 334 5.638530 TGGTTGCCAATATATACACTCCA 57.361 39.130 0.00 0.00 0.00 3.86
337 338 5.841267 TGCCAATATATACACTCCATGGT 57.159 39.130 12.58 0.00 0.00 3.55
338 339 6.943899 TGCCAATATATACACTCCATGGTA 57.056 37.500 12.58 0.00 0.00 3.25
340 341 6.070251 TGCCAATATATACACTCCATGGTAGG 60.070 42.308 12.58 6.13 0.00 3.18
341 342 6.632672 GCCAATATATACACTCCATGGTAGGG 60.633 46.154 12.58 11.50 0.00 3.53
343 344 2.889522 ATACACTCCATGGTAGGGGT 57.110 50.000 12.58 12.70 45.41 4.95
345 346 4.500125 ACTCCATGGTAGGGGTGG 57.500 61.111 12.58 0.00 42.03 4.61
346 347 1.478972 ACTCCATGGTAGGGGTGGT 59.521 57.895 12.58 0.00 42.03 4.16
347 348 0.178843 ACTCCATGGTAGGGGTGGTT 60.179 55.000 12.58 0.00 42.03 3.67
348 349 1.081513 ACTCCATGGTAGGGGTGGTTA 59.918 52.381 12.58 0.00 42.03 2.85
349 350 1.489230 CTCCATGGTAGGGGTGGTTAC 59.511 57.143 12.58 0.00 34.61 2.50
350 351 1.203453 TCCATGGTAGGGGTGGTTACA 60.203 52.381 12.58 0.00 34.61 2.41
351 352 1.636519 CCATGGTAGGGGTGGTTACAA 59.363 52.381 2.57 0.00 0.00 2.41
352 353 2.041891 CCATGGTAGGGGTGGTTACAAA 59.958 50.000 2.57 0.00 0.00 2.83
353 354 3.500654 CCATGGTAGGGGTGGTTACAAAA 60.501 47.826 2.57 0.00 0.00 2.44
356 357 3.204831 TGGTAGGGGTGGTTACAAAAACT 59.795 43.478 0.00 0.00 0.00 2.66
357 358 4.217510 GGTAGGGGTGGTTACAAAAACTT 58.782 43.478 0.00 0.00 0.00 2.66
358 359 5.103771 TGGTAGGGGTGGTTACAAAAACTTA 60.104 40.000 0.00 0.00 0.00 2.24
359 360 5.241506 GGTAGGGGTGGTTACAAAAACTTAC 59.758 44.000 0.00 0.00 0.00 2.34
360 361 5.133383 AGGGGTGGTTACAAAAACTTACT 57.867 39.130 0.00 0.00 0.00 2.24
362 363 4.888823 GGGGTGGTTACAAAAACTTACTCA 59.111 41.667 0.00 0.00 0.00 3.41
363 364 5.009310 GGGGTGGTTACAAAAACTTACTCAG 59.991 44.000 0.00 0.00 0.00 3.35
364 365 5.591472 GGGTGGTTACAAAAACTTACTCAGT 59.409 40.000 0.00 0.00 37.30 3.41
366 367 7.191551 GGTGGTTACAAAAACTTACTCAGTTC 58.808 38.462 0.00 0.00 45.77 3.01
367 368 7.148205 GGTGGTTACAAAAACTTACTCAGTTCA 60.148 37.037 0.00 0.00 45.77 3.18
368 369 8.238631 GTGGTTACAAAAACTTACTCAGTTCAA 58.761 33.333 0.00 0.00 45.77 2.69
369 370 8.962679 TGGTTACAAAAACTTACTCAGTTCAAT 58.037 29.630 0.00 0.00 45.77 2.57
373 374 8.506168 ACAAAAACTTACTCAGTTCAATCTGA 57.494 30.769 0.00 0.00 45.77 3.27
374 375 8.398665 ACAAAAACTTACTCAGTTCAATCTGAC 58.601 33.333 0.00 0.00 45.77 3.51
376 377 8.506168 AAAACTTACTCAGTTCAATCTGACAA 57.494 30.769 0.00 0.00 45.77 3.18
378 379 5.692204 ACTTACTCAGTTCAATCTGACAACG 59.308 40.000 0.00 0.00 39.20 4.10
380 381 1.792367 TCAGTTCAATCTGACAACGCG 59.208 47.619 3.53 3.53 39.20 6.01
382 383 0.165944 GTTCAATCTGACAACGCGGG 59.834 55.000 12.47 4.46 0.00 6.13
383 384 0.953471 TTCAATCTGACAACGCGGGG 60.953 55.000 12.47 4.01 0.00 5.73
395 396 3.206957 GCGGGGCGGTTACAATCC 61.207 66.667 0.00 0.00 0.00 3.01
396 397 2.587889 CGGGGCGGTTACAATCCT 59.412 61.111 0.00 0.00 0.00 3.24
397 398 1.824658 CGGGGCGGTTACAATCCTA 59.175 57.895 0.00 0.00 0.00 2.94
399 400 1.407162 CGGGGCGGTTACAATCCTAAA 60.407 52.381 0.00 0.00 0.00 1.85
400 401 2.747135 CGGGGCGGTTACAATCCTAAAT 60.747 50.000 0.00 0.00 0.00 1.40
401 402 2.882761 GGGGCGGTTACAATCCTAAATC 59.117 50.000 0.00 0.00 0.00 2.17
402 403 3.547746 GGGCGGTTACAATCCTAAATCA 58.452 45.455 0.00 0.00 0.00 2.57
403 404 4.142038 GGGCGGTTACAATCCTAAATCAT 58.858 43.478 0.00 0.00 0.00 2.45
404 405 4.583073 GGGCGGTTACAATCCTAAATCATT 59.417 41.667 0.00 0.00 0.00 2.57
405 406 5.068591 GGGCGGTTACAATCCTAAATCATTT 59.931 40.000 0.00 0.00 0.00 2.32
406 407 6.406512 GGGCGGTTACAATCCTAAATCATTTT 60.407 38.462 0.00 0.00 0.00 1.82
407 408 7.039270 GGCGGTTACAATCCTAAATCATTTTT 58.961 34.615 0.00 0.00 0.00 1.94
408 409 8.192110 GGCGGTTACAATCCTAAATCATTTTTA 58.808 33.333 0.00 0.00 0.00 1.52
409 410 9.744468 GCGGTTACAATCCTAAATCATTTTTAT 57.256 29.630 0.00 0.00 0.00 1.40
422 423 8.545229 AAATCATTTTTATTGATTCAACGGCA 57.455 26.923 0.15 0.00 41.69 5.69
423 424 8.545229 AATCATTTTTATTGATTCAACGGCAA 57.455 26.923 0.15 0.00 39.06 4.52
424 425 7.344910 TCATTTTTATTGATTCAACGGCAAC 57.655 32.000 0.15 0.00 0.00 4.17
438 439 3.864686 CAACGATTGCGGCTCCGG 61.865 66.667 10.57 0.00 43.17 5.14
452 453 3.546543 CCGGGCCGCTGATCCTTA 61.547 66.667 23.20 0.00 0.00 2.69
453 454 2.504032 CGGGCCGCTGATCCTTAA 59.496 61.111 15.42 0.00 0.00 1.85
454 455 1.153249 CGGGCCGCTGATCCTTAAA 60.153 57.895 15.42 0.00 0.00 1.52
455 456 1.160329 CGGGCCGCTGATCCTTAAAG 61.160 60.000 15.42 0.00 0.00 1.85
456 457 0.819666 GGGCCGCTGATCCTTAAAGG 60.820 60.000 0.00 0.00 36.46 3.11
457 458 1.448119 GGCCGCTGATCCTTAAAGGC 61.448 60.000 0.00 0.00 42.10 4.35
458 459 0.748005 GCCGCTGATCCTTAAAGGCA 60.748 55.000 0.00 0.00 42.37 4.75
459 460 1.017387 CCGCTGATCCTTAAAGGCAC 58.983 55.000 0.00 0.00 34.61 5.01
460 461 1.678728 CCGCTGATCCTTAAAGGCACA 60.679 52.381 0.00 0.00 34.61 4.57
461 462 2.292267 CGCTGATCCTTAAAGGCACAT 58.708 47.619 0.00 0.00 34.61 3.21
463 464 3.019564 GCTGATCCTTAAAGGCACATGT 58.980 45.455 0.00 0.00 34.61 3.21
464 465 4.199310 GCTGATCCTTAAAGGCACATGTA 58.801 43.478 0.00 0.00 34.61 2.29
465 466 4.035675 GCTGATCCTTAAAGGCACATGTAC 59.964 45.833 0.00 0.00 34.61 2.90
466 467 4.188462 TGATCCTTAAAGGCACATGTACG 58.812 43.478 0.00 0.00 34.61 3.67
467 468 3.965379 TCCTTAAAGGCACATGTACGA 57.035 42.857 0.00 0.00 34.61 3.43
468 469 4.274602 TCCTTAAAGGCACATGTACGAA 57.725 40.909 0.00 0.00 34.61 3.85
469 470 4.643463 TCCTTAAAGGCACATGTACGAAA 58.357 39.130 0.00 0.00 34.61 3.46
470 471 5.064558 TCCTTAAAGGCACATGTACGAAAA 58.935 37.500 0.00 0.00 34.61 2.29
471 472 5.049267 TCCTTAAAGGCACATGTACGAAAAC 60.049 40.000 0.00 0.00 34.61 2.43
472 473 5.048991 CCTTAAAGGCACATGTACGAAAACT 60.049 40.000 0.00 0.00 0.00 2.66
473 474 4.911514 AAAGGCACATGTACGAAAACTT 57.088 36.364 0.00 0.00 0.00 2.66
475 476 3.740115 AGGCACATGTACGAAAACTTCT 58.260 40.909 0.00 0.00 0.00 2.85
477 478 3.120304 GGCACATGTACGAAAACTTCTCC 60.120 47.826 0.00 0.00 0.00 3.71
478 479 3.423123 GCACATGTACGAAAACTTCTCCG 60.423 47.826 0.00 0.00 0.00 4.63
479 480 2.735134 ACATGTACGAAAACTTCTCCGC 59.265 45.455 0.00 0.00 0.00 5.54
481 482 2.400399 TGTACGAAAACTTCTCCGCTG 58.600 47.619 0.00 0.00 0.00 5.18
483 484 1.499049 ACGAAAACTTCTCCGCTGTC 58.501 50.000 0.00 0.00 0.00 3.51
484 485 1.202486 ACGAAAACTTCTCCGCTGTCA 60.202 47.619 0.00 0.00 0.00 3.58
485 486 2.069273 CGAAAACTTCTCCGCTGTCAT 58.931 47.619 0.00 0.00 0.00 3.06
486 487 2.480419 CGAAAACTTCTCCGCTGTCATT 59.520 45.455 0.00 0.00 0.00 2.57
487 488 3.665323 CGAAAACTTCTCCGCTGTCATTG 60.665 47.826 0.00 0.00 0.00 2.82
488 489 2.839486 AACTTCTCCGCTGTCATTGA 57.161 45.000 0.00 0.00 0.00 2.57
489 490 2.086054 ACTTCTCCGCTGTCATTGAC 57.914 50.000 9.93 9.93 0.00 3.18
490 491 1.344438 ACTTCTCCGCTGTCATTGACA 59.656 47.619 18.08 18.08 40.50 3.58
492 493 2.084610 TCTCCGCTGTCATTGACAAG 57.915 50.000 19.44 13.87 42.26 3.16
495 496 0.798776 CCGCTGTCATTGACAAGGTC 59.201 55.000 22.90 12.35 42.26 3.85
496 497 1.511850 CGCTGTCATTGACAAGGTCA 58.488 50.000 19.44 0.00 42.26 4.02
497 498 1.462283 CGCTGTCATTGACAAGGTCAG 59.538 52.381 19.44 18.57 43.69 3.51
498 499 2.771089 GCTGTCATTGACAAGGTCAGA 58.229 47.619 24.47 2.98 43.69 3.27
499 500 2.481952 GCTGTCATTGACAAGGTCAGAC 59.518 50.000 24.47 14.74 43.69 3.51
500 501 3.070018 CTGTCATTGACAAGGTCAGACC 58.930 50.000 19.44 12.25 43.69 3.85
501 502 2.069273 GTCATTGACAAGGTCAGACCG 58.931 52.381 14.32 3.38 43.69 4.79
502 503 1.967779 TCATTGACAAGGTCAGACCGA 59.032 47.619 14.32 0.00 44.90 4.69
503 504 2.069273 CATTGACAAGGTCAGACCGAC 58.931 52.381 14.32 7.54 44.90 4.79
504 505 1.410004 TTGACAAGGTCAGACCGACT 58.590 50.000 14.32 0.00 44.90 4.18
505 506 0.959553 TGACAAGGTCAGACCGACTC 59.040 55.000 14.32 9.74 44.90 3.36
506 507 0.244178 GACAAGGTCAGACCGACTCC 59.756 60.000 14.32 0.51 44.90 3.85
507 508 1.213013 CAAGGTCAGACCGACTCCG 59.787 63.158 14.32 0.00 44.90 4.63
523 524 2.417516 CGGTATGGGAGCGGTGAG 59.582 66.667 0.00 0.00 45.37 3.51
524 525 2.125326 CGGTATGGGAGCGGTGAGA 61.125 63.158 0.00 0.00 45.37 3.27
525 526 1.742768 GGTATGGGAGCGGTGAGAG 59.257 63.158 0.00 0.00 0.00 3.20
552 553 1.797933 CGACGGCTCGTTCTGACAG 60.798 63.158 0.00 0.00 41.37 3.51
569 570 2.099062 GCGGCAATGCTCGTTCAG 59.901 61.111 15.18 0.00 0.00 3.02
577 578 3.740590 CAATGCTCGTTCAGTGTGATTC 58.259 45.455 0.00 0.00 0.00 2.52
591 592 1.135083 GTGATTCATGGACCTCGACGT 60.135 52.381 0.00 0.00 0.00 4.34
600 601 6.342906 TCATGGACCTCGACGTAATTTTTAT 58.657 36.000 0.00 0.00 0.00 1.40
667 669 3.334272 AGTTAAAGTGCACGCAGAAAC 57.666 42.857 12.01 12.37 0.00 2.78
668 670 2.680841 AGTTAAAGTGCACGCAGAAACA 59.319 40.909 12.01 0.00 0.00 2.83
669 671 2.748461 TAAAGTGCACGCAGAAACAC 57.252 45.000 12.01 0.00 0.00 3.32
670 672 0.100503 AAAGTGCACGCAGAAACACC 59.899 50.000 12.01 0.00 33.46 4.16
671 673 0.748005 AAGTGCACGCAGAAACACCT 60.748 50.000 12.01 0.00 33.46 4.00
673 675 0.234884 GTGCACGCAGAAACACCTAC 59.765 55.000 0.00 0.00 0.00 3.18
675 677 1.341852 TGCACGCAGAAACACCTACTA 59.658 47.619 0.00 0.00 0.00 1.82
677 679 3.000727 GCACGCAGAAACACCTACTAAT 58.999 45.455 0.00 0.00 0.00 1.73
678 680 4.178540 GCACGCAGAAACACCTACTAATA 58.821 43.478 0.00 0.00 0.00 0.98
680 682 5.220416 GCACGCAGAAACACCTACTAATAAG 60.220 44.000 0.00 0.00 0.00 1.73
681 683 5.291128 CACGCAGAAACACCTACTAATAAGG 59.709 44.000 0.00 0.00 40.20 2.69
682 684 4.270325 CGCAGAAACACCTACTAATAAGGC 59.730 45.833 0.00 0.00 37.67 4.35
683 685 4.575236 GCAGAAACACCTACTAATAAGGCC 59.425 45.833 0.00 0.00 37.67 5.19
803 3218 1.235724 GAGGAAAGACAACAACCGGG 58.764 55.000 6.32 0.00 0.00 5.73
900 3316 5.942236 TCTCTCAGATCCACCAAAAATTCAG 59.058 40.000 0.00 0.00 0.00 3.02
1009 3439 7.563888 TGGGTCTGTATGCTCGTATATATAC 57.436 40.000 12.18 12.18 0.00 1.47
1036 3466 1.142465 CTCAGGGCCTGTTGCTGATAT 59.858 52.381 31.60 0.00 40.92 1.63
1087 3527 0.243907 TGGCAGCTCGTACTTCACTC 59.756 55.000 0.00 0.00 0.00 3.51
1094 3534 3.690628 AGCTCGTACTTCACTCCTTCTAC 59.309 47.826 0.00 0.00 0.00 2.59
1095 3535 3.690628 GCTCGTACTTCACTCCTTCTACT 59.309 47.826 0.00 0.00 0.00 2.57
1096 3536 4.201841 GCTCGTACTTCACTCCTTCTACTC 60.202 50.000 0.00 0.00 0.00 2.59
1227 3667 5.590663 GCTATTACCTGGAAGAAAAGAAGGG 59.409 44.000 0.00 0.00 34.07 3.95
1244 3684 3.319198 GGGAGGGCGTCAAGGACA 61.319 66.667 9.66 0.00 32.09 4.02
1855 4319 2.299326 ACCCTGACCTGTACTACGTT 57.701 50.000 0.00 0.00 0.00 3.99
1939 4415 4.146156 TCCGGCGGGGTGATCCTA 62.146 66.667 27.98 0.00 37.00 2.94
1971 4447 0.964358 CCCGTCACCTACCTCGAAGT 60.964 60.000 0.00 0.00 0.00 3.01
2017 4493 4.161189 CAGAAGCTCTTGACCAAGATCCTA 59.839 45.833 12.29 0.00 45.40 2.94
2020 4496 5.799827 AGCTCTTGACCAAGATCCTATAC 57.200 43.478 12.29 0.00 45.40 1.47
2093 4569 1.173043 CACCAAGGAATTTGCCGCTA 58.827 50.000 0.00 0.00 35.37 4.26
2111 4587 1.831736 CTATCAAGGTTCCCACGGTCT 59.168 52.381 0.00 0.00 0.00 3.85
2215 4693 2.029307 GCCTCACCATACGTCCCTCC 62.029 65.000 0.00 0.00 0.00 4.30
2311 4795 3.726517 CTGACGTTTGGGCCAGCG 61.727 66.667 24.32 24.32 0.00 5.18
2387 4877 4.406173 AGGCGTCGCTCGTGACAG 62.406 66.667 18.11 5.15 42.13 3.51
2413 4903 3.131400 CCACTCTTCTAGTTCTAGGGTGC 59.869 52.174 6.96 0.00 35.76 5.01
2436 4926 2.169352 TGCTCATCTTCTAGTTCCAGCC 59.831 50.000 0.00 0.00 0.00 4.85
2447 4941 4.819761 TCCAGCCAGATCACGCGC 62.820 66.667 5.73 0.00 0.00 6.86
2467 4964 5.174035 CGCGCTATAATAATCCTATGCAGTC 59.826 44.000 5.56 0.00 0.00 3.51
2530 5031 2.872245 AGTGTACGTGCATCATTATGGC 59.128 45.455 10.21 0.00 33.38 4.40
2534 5035 1.532437 ACGTGCATCATTATGGCATCG 59.468 47.619 1.65 0.00 33.38 3.84
2578 5333 5.441718 TCTTTCATTGTTAGGGCATCTCT 57.558 39.130 0.00 0.00 0.00 3.10
2594 5349 4.338879 CATCTCTGGTTCATTGGGAAAGT 58.661 43.478 0.00 0.00 37.23 2.66
2596 5351 4.144297 TCTCTGGTTCATTGGGAAAGTTG 58.856 43.478 0.00 0.00 37.23 3.16
2597 5352 3.230134 TCTGGTTCATTGGGAAAGTTGG 58.770 45.455 0.00 0.00 37.23 3.77
2598 5353 3.117322 TCTGGTTCATTGGGAAAGTTGGA 60.117 43.478 0.00 0.00 37.23 3.53
2599 5354 3.230134 TGGTTCATTGGGAAAGTTGGAG 58.770 45.455 0.00 0.00 37.23 3.86
2600 5355 3.117322 TGGTTCATTGGGAAAGTTGGAGA 60.117 43.478 0.00 0.00 37.23 3.71
2601 5356 3.255888 GGTTCATTGGGAAAGTTGGAGAC 59.744 47.826 0.00 0.00 37.23 3.36
2604 5359 5.011023 GTTCATTGGGAAAGTTGGAGACAAT 59.989 40.000 0.00 0.00 44.82 2.71
2605 5360 5.010922 TTCATTGGGAAAGTTGGAGACAATG 59.989 40.000 0.00 0.00 42.17 2.82
2606 5361 7.370204 TTCATTGGGAAAGTTGGAGACAATGT 61.370 38.462 12.43 0.00 42.17 2.71
2607 5362 8.128352 TTCATTGGGAAAGTTGGAGACAATGTA 61.128 37.037 12.43 2.95 42.17 2.29
2664 5520 5.689383 TTTGCTTCTACTCCATGTCAAAC 57.311 39.130 0.00 0.00 0.00 2.93
2665 5521 3.674997 TGCTTCTACTCCATGTCAAACC 58.325 45.455 0.00 0.00 0.00 3.27
2666 5522 3.010420 GCTTCTACTCCATGTCAAACCC 58.990 50.000 0.00 0.00 0.00 4.11
2667 5523 3.559171 GCTTCTACTCCATGTCAAACCCA 60.559 47.826 0.00 0.00 0.00 4.51
2668 5524 4.651778 CTTCTACTCCATGTCAAACCCAA 58.348 43.478 0.00 0.00 0.00 4.12
2669 5525 4.927267 TCTACTCCATGTCAAACCCAAT 57.073 40.909 0.00 0.00 0.00 3.16
2683 5539 0.265553 CCCAATCCCATCCCAACCAT 59.734 55.000 0.00 0.00 0.00 3.55
2714 5570 5.307456 TGACACCACCTACTACCAATGTAAA 59.693 40.000 0.00 0.00 0.00 2.01
2715 5571 6.183361 TGACACCACCTACTACCAATGTAAAA 60.183 38.462 0.00 0.00 0.00 1.52
2716 5572 6.603224 ACACCACCTACTACCAATGTAAAAA 58.397 36.000 0.00 0.00 0.00 1.94
2801 5657 4.858692 CCAAATGCTTAAAATCCACTCGTG 59.141 41.667 0.00 0.00 0.00 4.35
2813 5669 1.544537 CCACTCGTGAACATCCCCAAA 60.545 52.381 0.00 0.00 0.00 3.28
2824 5680 5.303333 TGAACATCCCCAAACTTAAACCTTC 59.697 40.000 0.00 0.00 0.00 3.46
2891 5750 8.021955 TCTAGCTCATCAATAACATTATTGCG 57.978 34.615 16.32 11.29 45.96 4.85
3057 5943 8.897752 ACAAATACTTGAATCCTCTTGCTTATC 58.102 33.333 0.00 0.00 36.33 1.75
3142 6034 8.685536 CAAAAAGTCAAGATCTAAAGCTTTTCG 58.314 33.333 18.47 9.31 34.78 3.46
3281 6186 5.356426 GGTTTCATTGTGGCTTAAGTTTGT 58.644 37.500 4.02 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.036575 ACAACATAAATCAAGCACAATTAGCAT 58.963 29.630 5.04 0.00 0.00 3.79
5 6 7.377398 ACAACATAAATCAAGCACAATTAGCA 58.623 30.769 5.04 0.00 0.00 3.49
10 11 8.367156 ACCTAAACAACATAAATCAAGCACAAT 58.633 29.630 0.00 0.00 0.00 2.71
11 12 7.721402 ACCTAAACAACATAAATCAAGCACAA 58.279 30.769 0.00 0.00 0.00 3.33
12 13 7.013750 TGACCTAAACAACATAAATCAAGCACA 59.986 33.333 0.00 0.00 0.00 4.57
14 15 7.517614 TGACCTAAACAACATAAATCAAGCA 57.482 32.000 0.00 0.00 0.00 3.91
15 16 8.810652 TTTGACCTAAACAACATAAATCAAGC 57.189 30.769 0.00 0.00 0.00 4.01
22 23 9.743057 CTCAAACATTTGACCTAAACAACATAA 57.257 29.630 2.89 0.00 41.88 1.90
23 24 8.356657 CCTCAAACATTTGACCTAAACAACATA 58.643 33.333 2.89 0.00 41.88 2.29
25 26 6.406400 CCCTCAAACATTTGACCTAAACAACA 60.406 38.462 2.89 0.00 41.88 3.33
26 27 5.983118 CCCTCAAACATTTGACCTAAACAAC 59.017 40.000 2.89 0.00 41.88 3.32
27 28 5.659079 ACCCTCAAACATTTGACCTAAACAA 59.341 36.000 2.89 0.00 41.88 2.83
28 29 5.205056 ACCCTCAAACATTTGACCTAAACA 58.795 37.500 2.89 0.00 41.88 2.83
29 30 5.784578 ACCCTCAAACATTTGACCTAAAC 57.215 39.130 2.89 0.00 41.88 2.01
30 31 5.659079 ACAACCCTCAAACATTTGACCTAAA 59.341 36.000 2.89 0.00 41.88 1.85
31 32 5.205056 ACAACCCTCAAACATTTGACCTAA 58.795 37.500 2.89 0.00 41.88 2.69
32 33 4.798882 ACAACCCTCAAACATTTGACCTA 58.201 39.130 2.89 0.00 41.88 3.08
33 34 3.642141 ACAACCCTCAAACATTTGACCT 58.358 40.909 2.89 0.00 41.88 3.85
34 35 4.099419 AGAACAACCCTCAAACATTTGACC 59.901 41.667 2.89 0.00 41.88 4.02
35 36 5.163561 TGAGAACAACCCTCAAACATTTGAC 60.164 40.000 2.89 0.00 41.88 3.18
36 37 4.952957 TGAGAACAACCCTCAAACATTTGA 59.047 37.500 6.85 6.85 44.31 2.69
37 38 5.261209 TGAGAACAACCCTCAAACATTTG 57.739 39.130 0.00 0.00 37.68 2.32
38 39 5.930837 TTGAGAACAACCCTCAAACATTT 57.069 34.783 0.00 0.00 44.74 2.32
55 56 8.792633 ACGAGAAAATAATTTTGGATGTTGAGA 58.207 29.630 0.00 0.00 31.94 3.27
56 57 8.853345 CACGAGAAAATAATTTTGGATGTTGAG 58.147 33.333 0.00 0.00 31.94 3.02
57 58 8.356657 ACACGAGAAAATAATTTTGGATGTTGA 58.643 29.630 0.00 0.00 31.94 3.18
58 59 8.519492 ACACGAGAAAATAATTTTGGATGTTG 57.481 30.769 0.00 0.00 31.94 3.33
59 60 9.191995 GAACACGAGAAAATAATTTTGGATGTT 57.808 29.630 0.00 0.00 31.94 2.71
60 61 8.576442 AGAACACGAGAAAATAATTTTGGATGT 58.424 29.630 0.00 0.00 31.94 3.06
61 62 8.970691 AGAACACGAGAAAATAATTTTGGATG 57.029 30.769 0.00 0.00 31.94 3.51
62 63 9.410556 CAAGAACACGAGAAAATAATTTTGGAT 57.589 29.630 0.00 0.00 31.94 3.41
63 64 8.625651 TCAAGAACACGAGAAAATAATTTTGGA 58.374 29.630 0.00 0.00 31.94 3.53
64 65 8.795786 TCAAGAACACGAGAAAATAATTTTGG 57.204 30.769 0.00 0.00 31.94 3.28
66 67 9.965824 ACATCAAGAACACGAGAAAATAATTTT 57.034 25.926 0.00 0.00 35.12 1.82
67 68 9.612620 GACATCAAGAACACGAGAAAATAATTT 57.387 29.630 0.00 0.00 0.00 1.82
68 69 9.003658 AGACATCAAGAACACGAGAAAATAATT 57.996 29.630 0.00 0.00 0.00 1.40
69 70 8.553459 AGACATCAAGAACACGAGAAAATAAT 57.447 30.769 0.00 0.00 0.00 1.28
71 72 6.590292 GGAGACATCAAGAACACGAGAAAATA 59.410 38.462 0.00 0.00 0.00 1.40
72 73 5.409826 GGAGACATCAAGAACACGAGAAAAT 59.590 40.000 0.00 0.00 0.00 1.82
73 74 4.750098 GGAGACATCAAGAACACGAGAAAA 59.250 41.667 0.00 0.00 0.00 2.29
75 76 3.611766 CGGAGACATCAAGAACACGAGAA 60.612 47.826 0.00 0.00 0.00 2.87
77 78 2.254459 CGGAGACATCAAGAACACGAG 58.746 52.381 0.00 0.00 0.00 4.18
78 79 1.067846 CCGGAGACATCAAGAACACGA 60.068 52.381 0.00 0.00 0.00 4.35
79 80 1.336887 ACCGGAGACATCAAGAACACG 60.337 52.381 9.46 0.00 0.00 4.49
81 82 2.632996 AGAACCGGAGACATCAAGAACA 59.367 45.455 9.46 0.00 0.00 3.18
82 83 3.320673 AGAACCGGAGACATCAAGAAC 57.679 47.619 9.46 0.00 0.00 3.01
83 84 4.099573 GGATAGAACCGGAGACATCAAGAA 59.900 45.833 9.46 0.00 0.00 2.52
84 85 3.637229 GGATAGAACCGGAGACATCAAGA 59.363 47.826 9.46 0.00 0.00 3.02
87 88 2.959030 CTGGATAGAACCGGAGACATCA 59.041 50.000 9.46 0.00 38.49 3.07
89 90 3.033659 ACTGGATAGAACCGGAGACAT 57.966 47.619 9.46 0.00 39.41 3.06
90 91 2.526888 ACTGGATAGAACCGGAGACA 57.473 50.000 9.46 0.00 39.41 3.41
91 92 3.315749 CACTACTGGATAGAACCGGAGAC 59.684 52.174 9.46 0.00 39.41 3.36
92 93 3.053842 ACACTACTGGATAGAACCGGAGA 60.054 47.826 9.46 0.00 39.41 3.71
93 94 3.288964 ACACTACTGGATAGAACCGGAG 58.711 50.000 9.46 0.00 39.41 4.63
94 95 3.377253 ACACTACTGGATAGAACCGGA 57.623 47.619 9.46 0.00 39.41 5.14
95 96 4.159879 AGAAACACTACTGGATAGAACCGG 59.840 45.833 0.00 0.00 41.66 5.28
98 99 6.532988 AGGAGAAACACTACTGGATAGAAC 57.467 41.667 0.00 0.00 38.56 3.01
100 101 8.840200 ATTTAGGAGAAACACTACTGGATAGA 57.160 34.615 0.00 0.00 40.50 1.98
104 105 8.431910 ACTAATTTAGGAGAAACACTACTGGA 57.568 34.615 8.26 0.00 40.50 3.86
105 106 8.311836 TGACTAATTTAGGAGAAACACTACTGG 58.688 37.037 8.26 0.00 40.50 4.00
107 108 9.310449 TCTGACTAATTTAGGAGAAACACTACT 57.690 33.333 8.26 0.00 43.18 2.57
110 111 9.442047 CAATCTGACTAATTTAGGAGAAACACT 57.558 33.333 8.26 0.00 0.00 3.55
111 112 9.220767 ACAATCTGACTAATTTAGGAGAAACAC 57.779 33.333 8.26 0.00 0.00 3.32
112 113 9.793259 AACAATCTGACTAATTTAGGAGAAACA 57.207 29.630 8.26 0.00 0.00 2.83
128 129 9.755804 TCATGAGAATACATAGAACAATCTGAC 57.244 33.333 0.00 0.00 37.10 3.51
181 182 9.341078 TGCTGATTGATTTACATATTAGAAGCA 57.659 29.630 0.00 0.00 0.00 3.91
190 191 9.743581 ACCATGATATGCTGATTGATTTACATA 57.256 29.630 0.00 0.00 0.00 2.29
191 192 8.520351 CACCATGATATGCTGATTGATTTACAT 58.480 33.333 0.00 0.00 0.00 2.29
192 193 7.040271 CCACCATGATATGCTGATTGATTTACA 60.040 37.037 0.00 0.00 0.00 2.41
195 196 5.836898 ACCACCATGATATGCTGATTGATTT 59.163 36.000 0.00 0.00 0.00 2.17
196 197 5.243060 CACCACCATGATATGCTGATTGATT 59.757 40.000 0.00 0.00 0.00 2.57
197 198 4.765339 CACCACCATGATATGCTGATTGAT 59.235 41.667 0.00 0.00 0.00 2.57
198 199 4.139038 CACCACCATGATATGCTGATTGA 58.861 43.478 0.00 0.00 0.00 2.57
200 201 3.887110 CACACCACCATGATATGCTGATT 59.113 43.478 0.00 0.00 0.00 2.57
201 202 3.483421 CACACCACCATGATATGCTGAT 58.517 45.455 0.00 0.00 0.00 2.90
202 203 2.921821 CACACCACCATGATATGCTGA 58.078 47.619 0.00 0.00 0.00 4.26
203 204 1.335810 GCACACCACCATGATATGCTG 59.664 52.381 0.00 0.00 0.00 4.41
204 205 1.683943 GCACACCACCATGATATGCT 58.316 50.000 0.00 0.00 0.00 3.79
206 207 0.946528 CGGCACACCACCATGATATG 59.053 55.000 0.00 0.00 34.57 1.78
207 208 0.819259 GCGGCACACCACCATGATAT 60.819 55.000 0.00 0.00 34.57 1.63
208 209 1.451207 GCGGCACACCACCATGATA 60.451 57.895 0.00 0.00 34.57 2.15
209 210 2.751436 GCGGCACACCACCATGAT 60.751 61.111 0.00 0.00 34.57 2.45
221 222 2.202824 GTATAGTGCACGGCGGCA 60.203 61.111 17.02 17.02 42.53 5.69
222 223 1.949631 GAGTATAGTGCACGGCGGC 60.950 63.158 13.24 12.77 0.00 6.53
224 225 2.293627 GCGAGTATAGTGCACGGCG 61.294 63.158 12.01 4.80 0.00 6.46
225 226 1.065928 AGCGAGTATAGTGCACGGC 59.934 57.895 12.01 7.56 0.00 5.68
226 227 0.100682 ACAGCGAGTATAGTGCACGG 59.899 55.000 12.01 0.00 0.00 4.94
228 229 3.548415 GGACTACAGCGAGTATAGTGCAC 60.548 52.174 9.40 9.40 37.27 4.57
229 230 2.617308 GGACTACAGCGAGTATAGTGCA 59.383 50.000 0.00 0.00 37.27 4.57
230 231 2.030981 GGGACTACAGCGAGTATAGTGC 60.031 54.545 0.00 0.00 36.76 4.40
231 232 2.553172 GGGGACTACAGCGAGTATAGTG 59.447 54.545 0.00 0.00 30.93 2.74
233 234 2.161030 GGGGGACTACAGCGAGTATAG 58.839 57.143 0.00 0.00 30.93 1.31
235 236 0.556747 AGGGGGACTACAGCGAGTAT 59.443 55.000 0.00 0.00 30.93 2.12
237 238 1.380112 GAGGGGGACTACAGCGAGT 60.380 63.158 0.00 0.00 0.00 4.18
238 239 0.183014 TAGAGGGGGACTACAGCGAG 59.817 60.000 0.00 0.00 0.00 5.03
239 240 0.183014 CTAGAGGGGGACTACAGCGA 59.817 60.000 0.00 0.00 0.00 4.93
240 241 1.457009 GCTAGAGGGGGACTACAGCG 61.457 65.000 0.00 0.00 0.00 5.18
241 242 0.105913 AGCTAGAGGGGGACTACAGC 60.106 60.000 0.00 0.00 0.00 4.40
242 243 1.497286 AGAGCTAGAGGGGGACTACAG 59.503 57.143 0.00 0.00 0.00 2.74
243 244 1.495574 GAGAGCTAGAGGGGGACTACA 59.504 57.143 0.00 0.00 0.00 2.74
244 245 1.202964 GGAGAGCTAGAGGGGGACTAC 60.203 61.905 0.00 0.00 0.00 2.73
246 247 0.629270 AGGAGAGCTAGAGGGGGACT 60.629 60.000 0.00 0.00 0.00 3.85
247 248 0.469144 CAGGAGAGCTAGAGGGGGAC 60.469 65.000 0.00 0.00 0.00 4.46
248 249 0.926720 ACAGGAGAGCTAGAGGGGGA 60.927 60.000 0.00 0.00 0.00 4.81
249 250 0.031616 AACAGGAGAGCTAGAGGGGG 60.032 60.000 0.00 0.00 0.00 5.40
251 252 4.039852 GGATTTAACAGGAGAGCTAGAGGG 59.960 50.000 0.00 0.00 0.00 4.30
253 254 5.127845 TGTGGATTTAACAGGAGAGCTAGAG 59.872 44.000 0.00 0.00 0.00 2.43
254 255 5.023452 TGTGGATTTAACAGGAGAGCTAGA 58.977 41.667 0.00 0.00 0.00 2.43
256 257 4.081087 GGTGTGGATTTAACAGGAGAGCTA 60.081 45.833 0.00 0.00 0.00 3.32
258 259 3.010420 GGTGTGGATTTAACAGGAGAGC 58.990 50.000 0.00 0.00 0.00 4.09
259 260 3.264450 AGGGTGTGGATTTAACAGGAGAG 59.736 47.826 0.00 0.00 0.00 3.20
260 261 3.256704 AGGGTGTGGATTTAACAGGAGA 58.743 45.455 0.00 0.00 0.00 3.71
261 262 3.721087 AGGGTGTGGATTTAACAGGAG 57.279 47.619 0.00 0.00 0.00 3.69
262 263 5.586155 TTTAGGGTGTGGATTTAACAGGA 57.414 39.130 0.00 0.00 0.00 3.86
263 264 6.452242 GTTTTTAGGGTGTGGATTTAACAGG 58.548 40.000 0.00 0.00 0.00 4.00
264 265 6.452242 GGTTTTTAGGGTGTGGATTTAACAG 58.548 40.000 0.00 0.00 0.00 3.16
265 266 5.304871 GGGTTTTTAGGGTGTGGATTTAACA 59.695 40.000 0.00 0.00 0.00 2.41
268 269 5.076057 TGGGTTTTTAGGGTGTGGATTTA 57.924 39.130 0.00 0.00 0.00 1.40
269 270 3.901222 CTGGGTTTTTAGGGTGTGGATTT 59.099 43.478 0.00 0.00 0.00 2.17
270 271 3.116900 ACTGGGTTTTTAGGGTGTGGATT 60.117 43.478 0.00 0.00 0.00 3.01
271 272 2.449345 ACTGGGTTTTTAGGGTGTGGAT 59.551 45.455 0.00 0.00 0.00 3.41
272 273 1.854280 ACTGGGTTTTTAGGGTGTGGA 59.146 47.619 0.00 0.00 0.00 4.02
273 274 1.960689 CACTGGGTTTTTAGGGTGTGG 59.039 52.381 0.00 0.00 0.00 4.17
275 276 2.512476 AGTCACTGGGTTTTTAGGGTGT 59.488 45.455 0.00 0.00 0.00 4.16
276 277 2.884639 CAGTCACTGGGTTTTTAGGGTG 59.115 50.000 0.00 0.00 0.00 4.61
277 278 3.223674 CAGTCACTGGGTTTTTAGGGT 57.776 47.619 0.00 0.00 0.00 4.34
289 290 0.534412 CTACTCCTGGCCAGTCACTG 59.466 60.000 30.63 15.44 0.00 3.66
291 292 0.977395 AACTACTCCTGGCCAGTCAC 59.023 55.000 30.63 0.00 0.00 3.67
292 293 1.347707 CAAACTACTCCTGGCCAGTCA 59.652 52.381 30.63 16.13 0.00 3.41
293 294 1.339151 CCAAACTACTCCTGGCCAGTC 60.339 57.143 30.63 0.00 0.00 3.51
295 296 0.693049 ACCAAACTACTCCTGGCCAG 59.307 55.000 26.87 26.87 33.19 4.85
296 297 1.145571 AACCAAACTACTCCTGGCCA 58.854 50.000 4.71 4.71 33.19 5.36
297 298 1.534729 CAACCAAACTACTCCTGGCC 58.465 55.000 0.00 0.00 33.19 5.36
299 300 1.202879 TGGCAACCAAACTACTCCTGG 60.203 52.381 0.00 0.00 36.24 4.45
300 301 2.270352 TGGCAACCAAACTACTCCTG 57.730 50.000 0.00 0.00 0.00 3.86
311 312 5.638530 TGGAGTGTATATATTGGCAACCA 57.361 39.130 0.00 0.00 0.00 3.67
312 313 5.415701 CCATGGAGTGTATATATTGGCAACC 59.584 44.000 5.56 0.00 0.00 3.77
313 314 6.003950 ACCATGGAGTGTATATATTGGCAAC 58.996 40.000 21.47 0.00 0.00 4.17
314 315 6.199557 ACCATGGAGTGTATATATTGGCAA 57.800 37.500 21.47 0.68 0.00 4.52
316 317 6.349300 CCTACCATGGAGTGTATATATTGGC 58.651 44.000 21.47 0.00 0.00 4.52
317 318 6.126768 CCCCTACCATGGAGTGTATATATTGG 60.127 46.154 21.47 1.85 0.00 3.16
319 320 6.443849 CACCCCTACCATGGAGTGTATATATT 59.556 42.308 21.47 0.00 0.00 1.28
320 321 5.964477 CACCCCTACCATGGAGTGTATATAT 59.036 44.000 21.47 0.00 0.00 0.86
321 322 5.338632 CACCCCTACCATGGAGTGTATATA 58.661 45.833 21.47 0.00 0.00 0.86
322 323 4.168101 CACCCCTACCATGGAGTGTATAT 58.832 47.826 21.47 0.00 0.00 0.86
323 324 3.583228 CACCCCTACCATGGAGTGTATA 58.417 50.000 21.47 0.00 0.00 1.47
325 326 1.624113 CCACCCCTACCATGGAGTGTA 60.624 57.143 21.47 0.00 35.33 2.90
326 327 0.914417 CCACCCCTACCATGGAGTGT 60.914 60.000 21.47 8.04 35.33 3.55
327 328 0.914417 ACCACCCCTACCATGGAGTG 60.914 60.000 21.47 16.02 36.94 3.51
329 330 1.489230 GTAACCACCCCTACCATGGAG 59.511 57.143 21.47 11.37 36.94 3.86
330 331 1.203453 TGTAACCACCCCTACCATGGA 60.203 52.381 21.47 0.67 36.94 3.41
332 333 3.443145 TTTGTAACCACCCCTACCATG 57.557 47.619 0.00 0.00 0.00 3.66
333 334 4.140876 AGTTTTTGTAACCACCCCTACCAT 60.141 41.667 0.00 0.00 0.00 3.55
337 338 6.126536 TGAGTAAGTTTTTGTAACCACCCCTA 60.127 38.462 0.00 0.00 0.00 3.53
338 339 5.133383 AGTAAGTTTTTGTAACCACCCCT 57.867 39.130 0.00 0.00 0.00 4.79
340 341 5.591472 ACTGAGTAAGTTTTTGTAACCACCC 59.409 40.000 0.00 0.00 34.57 4.61
341 342 6.688637 ACTGAGTAAGTTTTTGTAACCACC 57.311 37.500 0.00 0.00 34.57 4.61
356 357 4.447724 GCGTTGTCAGATTGAACTGAGTAA 59.552 41.667 0.00 0.00 45.67 2.24
357 358 3.987868 GCGTTGTCAGATTGAACTGAGTA 59.012 43.478 0.00 0.00 45.67 2.59
358 359 2.802816 GCGTTGTCAGATTGAACTGAGT 59.197 45.455 0.00 0.00 45.67 3.41
359 360 2.159920 CGCGTTGTCAGATTGAACTGAG 60.160 50.000 0.00 0.00 45.67 3.35
360 361 1.792367 CGCGTTGTCAGATTGAACTGA 59.208 47.619 0.00 0.00 43.39 3.41
362 363 1.148310 CCGCGTTGTCAGATTGAACT 58.852 50.000 4.92 0.00 0.00 3.01
363 364 0.165944 CCCGCGTTGTCAGATTGAAC 59.834 55.000 4.92 0.00 0.00 3.18
364 365 0.953471 CCCCGCGTTGTCAGATTGAA 60.953 55.000 4.92 0.00 0.00 2.69
365 366 1.375396 CCCCGCGTTGTCAGATTGA 60.375 57.895 4.92 0.00 0.00 2.57
366 367 3.039202 GCCCCGCGTTGTCAGATTG 62.039 63.158 4.92 0.00 0.00 2.67
367 368 2.746277 GCCCCGCGTTGTCAGATT 60.746 61.111 4.92 0.00 0.00 2.40
378 379 2.314415 TAGGATTGTAACCGCCCCGC 62.314 60.000 0.00 0.00 0.00 6.13
380 381 2.423446 TTTAGGATTGTAACCGCCCC 57.577 50.000 0.00 0.00 0.00 5.80
382 383 5.767816 AATGATTTAGGATTGTAACCGCC 57.232 39.130 0.00 0.00 0.00 6.13
383 384 9.744468 ATAAAAATGATTTAGGATTGTAACCGC 57.256 29.630 0.00 0.00 0.00 5.68
396 397 9.645059 TGCCGTTGAATCAATAAAAATGATTTA 57.355 25.926 0.00 0.00 45.11 1.40
397 398 8.545229 TGCCGTTGAATCAATAAAAATGATTT 57.455 26.923 0.00 0.00 45.11 2.17
399 400 7.201427 CGTTGCCGTTGAATCAATAAAAATGAT 60.201 33.333 0.00 0.00 39.15 2.45
400 401 6.088749 CGTTGCCGTTGAATCAATAAAAATGA 59.911 34.615 0.00 0.00 0.00 2.57
401 402 6.088749 TCGTTGCCGTTGAATCAATAAAAATG 59.911 34.615 0.00 0.00 35.01 2.32
402 403 6.153067 TCGTTGCCGTTGAATCAATAAAAAT 58.847 32.000 0.00 0.00 35.01 1.82
403 404 5.520632 TCGTTGCCGTTGAATCAATAAAAA 58.479 33.333 0.00 0.00 35.01 1.94
404 405 5.109662 TCGTTGCCGTTGAATCAATAAAA 57.890 34.783 0.00 0.00 35.01 1.52
405 406 4.750952 TCGTTGCCGTTGAATCAATAAA 57.249 36.364 0.00 0.00 35.01 1.40
406 407 4.955925 ATCGTTGCCGTTGAATCAATAA 57.044 36.364 0.00 0.00 35.01 1.40
407 408 4.657055 CAATCGTTGCCGTTGAATCAATA 58.343 39.130 0.00 0.00 35.01 1.90
408 409 3.500982 CAATCGTTGCCGTTGAATCAAT 58.499 40.909 0.00 0.00 35.01 2.57
409 410 2.927429 CAATCGTTGCCGTTGAATCAA 58.073 42.857 0.00 0.00 35.01 2.57
410 411 2.610219 CAATCGTTGCCGTTGAATCA 57.390 45.000 0.00 0.00 35.01 2.57
421 422 3.864686 CCGGAGCCGCAATCGTTG 61.865 66.667 0.00 0.00 38.24 4.10
435 436 2.602746 TTTAAGGATCAGCGGCCCGG 62.603 60.000 4.77 0.00 0.00 5.73
437 438 0.819666 CCTTTAAGGATCAGCGGCCC 60.820 60.000 4.75 0.00 37.67 5.80
438 439 1.448119 GCCTTTAAGGATCAGCGGCC 61.448 60.000 16.18 0.00 37.67 6.13
439 440 0.748005 TGCCTTTAAGGATCAGCGGC 60.748 55.000 16.18 0.00 37.67 6.53
441 442 1.737838 TGTGCCTTTAAGGATCAGCG 58.262 50.000 16.18 0.00 37.67 5.18
442 443 3.019564 ACATGTGCCTTTAAGGATCAGC 58.980 45.455 16.18 0.00 37.67 4.26
444 445 4.081365 TCGTACATGTGCCTTTAAGGATCA 60.081 41.667 16.18 12.45 37.67 2.92
445 446 4.439057 TCGTACATGTGCCTTTAAGGATC 58.561 43.478 16.18 7.02 37.67 3.36
447 448 3.965379 TCGTACATGTGCCTTTAAGGA 57.035 42.857 16.18 0.00 37.67 3.36
448 449 5.048991 AGTTTTCGTACATGTGCCTTTAAGG 60.049 40.000 9.11 6.64 38.80 2.69
449 450 5.997385 AGTTTTCGTACATGTGCCTTTAAG 58.003 37.500 9.11 0.00 0.00 1.85
451 452 5.761234 AGAAGTTTTCGTACATGTGCCTTTA 59.239 36.000 9.11 0.00 34.02 1.85
452 453 4.578928 AGAAGTTTTCGTACATGTGCCTTT 59.421 37.500 9.11 0.00 34.02 3.11
453 454 4.134563 AGAAGTTTTCGTACATGTGCCTT 58.865 39.130 9.11 5.36 34.02 4.35
454 455 3.740115 AGAAGTTTTCGTACATGTGCCT 58.260 40.909 9.11 0.00 34.02 4.75
455 456 3.120304 GGAGAAGTTTTCGTACATGTGCC 60.120 47.826 9.11 0.00 34.02 5.01
456 457 3.423123 CGGAGAAGTTTTCGTACATGTGC 60.423 47.826 9.11 6.17 34.02 4.57
457 458 3.423123 GCGGAGAAGTTTTCGTACATGTG 60.423 47.826 9.11 0.00 34.02 3.21
458 459 2.735134 GCGGAGAAGTTTTCGTACATGT 59.265 45.455 2.69 2.69 34.02 3.21
459 460 2.993899 AGCGGAGAAGTTTTCGTACATG 59.006 45.455 0.00 0.00 34.02 3.21
460 461 2.993899 CAGCGGAGAAGTTTTCGTACAT 59.006 45.455 0.00 0.00 34.02 2.29
461 462 2.223876 ACAGCGGAGAAGTTTTCGTACA 60.224 45.455 0.00 0.00 34.02 2.90
463 464 2.034939 TGACAGCGGAGAAGTTTTCGTA 59.965 45.455 0.00 0.00 34.02 3.43
464 465 1.202486 TGACAGCGGAGAAGTTTTCGT 60.202 47.619 0.00 0.00 34.02 3.85
465 466 1.497991 TGACAGCGGAGAAGTTTTCG 58.502 50.000 0.00 0.00 34.02 3.46
466 467 3.498397 TCAATGACAGCGGAGAAGTTTTC 59.502 43.478 0.00 0.00 0.00 2.29
467 468 3.251004 GTCAATGACAGCGGAGAAGTTTT 59.749 43.478 8.74 0.00 32.09 2.43
468 469 2.808543 GTCAATGACAGCGGAGAAGTTT 59.191 45.455 8.74 0.00 32.09 2.66
469 470 2.224281 TGTCAATGACAGCGGAGAAGTT 60.224 45.455 12.63 0.00 37.67 2.66
470 471 1.344438 TGTCAATGACAGCGGAGAAGT 59.656 47.619 12.63 0.00 37.67 3.01
471 472 2.084610 TGTCAATGACAGCGGAGAAG 57.915 50.000 12.63 0.00 37.67 2.85
472 473 2.416747 CTTGTCAATGACAGCGGAGAA 58.583 47.619 16.10 0.00 43.69 2.87
473 474 1.338105 CCTTGTCAATGACAGCGGAGA 60.338 52.381 21.61 5.68 43.69 3.71
475 476 0.396435 ACCTTGTCAATGACAGCGGA 59.604 50.000 28.41 11.67 43.69 5.54
477 478 1.462283 CTGACCTTGTCAATGACAGCG 59.538 52.381 16.10 12.28 43.69 5.18
478 479 2.481952 GTCTGACCTTGTCAATGACAGC 59.518 50.000 16.10 8.13 43.69 4.40
479 480 3.070018 GGTCTGACCTTGTCAATGACAG 58.930 50.000 19.53 8.51 43.69 3.51
481 482 2.069273 CGGTCTGACCTTGTCAATGAC 58.931 52.381 23.49 6.41 42.26 3.06
483 484 2.069273 GTCGGTCTGACCTTGTCAATG 58.931 52.381 23.49 6.52 42.26 2.82
484 485 2.457366 GTCGGTCTGACCTTGTCAAT 57.543 50.000 23.49 0.00 42.26 2.57
485 486 3.980583 GTCGGTCTGACCTTGTCAA 57.019 52.632 23.49 0.76 42.26 3.18
504 505 3.151710 CACCGCTCCCATACCGGA 61.152 66.667 9.46 0.00 44.55 5.14
505 506 3.151710 TCACCGCTCCCATACCGG 61.152 66.667 0.00 0.00 46.97 5.28
506 507 2.076622 CTCTCACCGCTCCCATACCG 62.077 65.000 0.00 0.00 0.00 4.02
507 508 1.742768 CTCTCACCGCTCCCATACC 59.257 63.158 0.00 0.00 0.00 2.73
508 509 1.068250 GCTCTCACCGCTCCCATAC 59.932 63.158 0.00 0.00 0.00 2.39
509 510 2.490148 CGCTCTCACCGCTCCCATA 61.490 63.158 0.00 0.00 0.00 2.74
510 511 3.842923 CGCTCTCACCGCTCCCAT 61.843 66.667 0.00 0.00 0.00 4.00
519 520 4.400109 TCGACGTGCCGCTCTCAC 62.400 66.667 0.00 0.00 0.00 3.51
543 544 1.154150 GCATTGCCGCTGTCAGAAC 60.154 57.895 3.32 0.00 0.00 3.01
552 553 2.099062 CTGAACGAGCATTGCCGC 59.901 61.111 16.13 4.61 0.00 6.53
569 570 2.271800 GTCGAGGTCCATGAATCACAC 58.728 52.381 0.00 0.00 0.00 3.82
577 578 4.939509 AAAAATTACGTCGAGGTCCATG 57.060 40.909 15.00 0.00 0.00 3.66
667 669 2.224548 GGCCTGGCCTTATTAGTAGGTG 60.225 54.545 30.42 0.00 46.69 4.00
668 670 2.055579 GGCCTGGCCTTATTAGTAGGT 58.944 52.381 30.42 0.00 46.69 3.08
669 671 2.861147 GGCCTGGCCTTATTAGTAGG 57.139 55.000 30.42 0.00 46.69 3.18
682 684 3.997064 CTCTTCTCGCGTGGCCTGG 62.997 68.421 5.77 0.00 0.00 4.45
683 685 2.290122 ATCTCTTCTCGCGTGGCCTG 62.290 60.000 5.77 0.00 0.00 4.85
803 3218 3.405592 CTGGCACATCCGCACATGC 62.406 63.158 0.00 0.00 38.20 4.06
1018 3448 2.158769 TGTATATCAGCAACAGGCCCTG 60.159 50.000 9.83 9.83 46.50 4.45
1036 3466 5.105473 GGTTATATCAAGCTAGGCCGATGTA 60.105 44.000 0.00 0.00 0.00 2.29
1087 3527 2.955660 CAGCAGTAGGAGGAGTAGAAGG 59.044 54.545 0.00 0.00 0.00 3.46
1094 3534 2.811101 CGCCAGCAGTAGGAGGAG 59.189 66.667 0.00 0.00 0.00 3.69
1095 3535 3.461773 GCGCCAGCAGTAGGAGGA 61.462 66.667 0.00 0.00 44.35 3.71
1227 3667 2.595009 GATGTCCTTGACGCCCTCCC 62.595 65.000 0.00 0.00 34.95 4.30
1855 4319 0.391130 CCTGCACGCCTGTTAGCTTA 60.391 55.000 0.00 0.00 0.00 3.09
1939 4415 3.175710 ACGGGAAGGGTGGTGCTT 61.176 61.111 0.00 0.00 0.00 3.91
1971 4447 2.357760 GAACCTTGTACGCGGCCA 60.358 61.111 12.47 2.88 0.00 5.36
2020 4496 1.679977 TACCCCGACGACCTTCTGG 60.680 63.158 0.00 0.00 39.83 3.86
2111 4587 2.970324 GCCGTCAAACACCAGCGA 60.970 61.111 0.00 0.00 0.00 4.93
2136 4614 1.629861 TCACATTGAGCTCCATCACCA 59.370 47.619 12.15 0.00 0.00 4.17
2139 4617 3.986996 TCTTCACATTGAGCTCCATCA 57.013 42.857 12.15 0.00 0.00 3.07
2215 4693 2.923035 AGGACGGACCCACCAGTG 60.923 66.667 4.71 0.00 40.05 3.66
2269 4753 2.564458 CCGTCGTCGTGGATGTCA 59.436 61.111 0.71 0.00 35.01 3.58
2337 4821 2.203280 CACCACCCTTCGTTGCCA 60.203 61.111 0.00 0.00 0.00 4.92
2387 4877 4.581409 CCCTAGAACTAGAAGAGTGGCTAC 59.419 50.000 10.04 0.00 38.87 3.58
2413 4903 3.443037 CTGGAACTAGAAGATGAGCACG 58.557 50.000 0.00 0.00 0.00 5.34
2436 4926 5.344066 AGGATTATTATAGCGCGTGATCTG 58.656 41.667 8.43 0.00 0.00 2.90
2467 4964 2.933495 CATGCCTCCATGTGAACTTG 57.067 50.000 0.00 0.00 43.07 3.16
2510 5007 2.611751 TGCCATAATGATGCACGTACAC 59.388 45.455 0.00 0.00 0.00 2.90
2530 5031 6.073112 TGGACATTACATAATGATGCACGATG 60.073 38.462 16.66 0.00 44.40 3.84
2534 5035 7.444629 AGATGGACATTACATAATGATGCAC 57.555 36.000 16.66 6.67 44.40 4.57
2546 5301 7.682021 GCCCTAACAATGAAAGATGGACATTAC 60.682 40.741 0.00 0.00 33.73 1.89
2569 5324 1.396653 CCAATGAACCAGAGATGCCC 58.603 55.000 0.00 0.00 0.00 5.36
2578 5333 3.117322 TCTCCAACTTTCCCAATGAACCA 60.117 43.478 0.00 0.00 31.05 3.67
2594 5349 5.104527 CCCTTCCTATGTACATTGTCTCCAA 60.105 44.000 14.77 0.00 34.45 3.53
2596 5351 4.202367 CCCCTTCCTATGTACATTGTCTCC 60.202 50.000 14.77 0.00 0.00 3.71
2597 5352 4.202367 CCCCCTTCCTATGTACATTGTCTC 60.202 50.000 14.77 0.00 0.00 3.36
2598 5353 3.716872 CCCCCTTCCTATGTACATTGTCT 59.283 47.826 14.77 0.00 0.00 3.41
2599 5354 3.714798 TCCCCCTTCCTATGTACATTGTC 59.285 47.826 14.77 0.00 0.00 3.18
2600 5355 3.743132 TCCCCCTTCCTATGTACATTGT 58.257 45.455 14.77 0.00 0.00 2.71
2601 5356 4.507335 CCATCCCCCTTCCTATGTACATTG 60.507 50.000 14.77 12.09 0.00 2.82
2604 5359 2.701551 CCATCCCCCTTCCTATGTACA 58.298 52.381 0.00 0.00 0.00 2.90
2605 5360 1.351350 GCCATCCCCCTTCCTATGTAC 59.649 57.143 0.00 0.00 0.00 2.90
2606 5361 1.225694 AGCCATCCCCCTTCCTATGTA 59.774 52.381 0.00 0.00 0.00 2.29
2607 5362 0.028642 AGCCATCCCCCTTCCTATGT 60.029 55.000 0.00 0.00 0.00 2.29
2608 5363 0.695347 GAGCCATCCCCCTTCCTATG 59.305 60.000 0.00 0.00 0.00 2.23
2664 5520 0.265553 ATGGTTGGGATGGGATTGGG 59.734 55.000 0.00 0.00 0.00 4.12
2665 5521 1.708341 GATGGTTGGGATGGGATTGG 58.292 55.000 0.00 0.00 0.00 3.16
2666 5522 1.321474 CGATGGTTGGGATGGGATTG 58.679 55.000 0.00 0.00 0.00 2.67
2667 5523 0.468029 GCGATGGTTGGGATGGGATT 60.468 55.000 0.00 0.00 0.00 3.01
2668 5524 1.151450 GCGATGGTTGGGATGGGAT 59.849 57.895 0.00 0.00 0.00 3.85
2669 5525 2.595095 GCGATGGTTGGGATGGGA 59.405 61.111 0.00 0.00 0.00 4.37
2683 5539 1.532078 TAGGTGGTGTCAGTGGCGA 60.532 57.895 0.00 0.00 0.00 5.54
2765 5621 1.453155 CATTTGGAGAAGGGTCACCG 58.547 55.000 0.00 0.00 43.47 4.94
2766 5622 1.177401 GCATTTGGAGAAGGGTCACC 58.823 55.000 0.00 0.00 35.21 4.02
2801 5657 5.279306 GGAAGGTTTAAGTTTGGGGATGTTC 60.279 44.000 0.00 0.00 0.00 3.18
2813 5669 2.230750 CGAGGACGAGGAAGGTTTAAGT 59.769 50.000 0.00 0.00 42.66 2.24
2891 5750 0.464452 AGACAAGGGTACGCCTATGC 59.536 55.000 6.27 1.48 34.45 3.14
2987 5873 6.991485 TGACAAGAAGCATCGAAATTTTTC 57.009 33.333 0.00 0.00 0.00 2.29
3057 5943 8.794308 AAAACAACAAAATGAAAAACAACCTG 57.206 26.923 0.00 0.00 0.00 4.00
3130 6022 3.057596 TGGGCATGAACGAAAAGCTTTAG 60.058 43.478 13.10 12.21 0.00 1.85
3142 6034 2.415512 GAGAACGTTAGTGGGCATGAAC 59.584 50.000 0.00 0.00 0.00 3.18
3281 6186 8.713971 AGAGACAACATATTGGTCCATAATACA 58.286 33.333 0.00 0.00 40.42 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.