AutoCloner

Multiple sequence alignment - TraesCS7D01G017000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G017000	chr7D	100.000	2654	0	0	1	2654	7467113	7464460	0.000000e+00	4902.0
1	TraesCS7D01G017000	chr7D	81.057	776	86	46	846	1612	568419667	568420390	1.780000e-156	562.0
2	TraesCS7D01G017000	chr7D	82.937	504	68	8	1153	1654	7458511	7458024	3.140000e-119	438.0
3	TraesCS7D01G017000	chr7D	96.000	75	3	0	1111	1185	10507705	10507779	3.590000e-24	122.0
4	TraesCS7D01G017000	chr7D	79.545	88	13	5	1818	1903	393028476	393028392	1.030000e-04	58.4
5	TraesCS7D01G017000	chr7A	92.312	1691	90	13	1	1680	8405283	8403622	0.000000e+00	2366.0
6	TraesCS7D01G017000	chr7A	92.312	1691	90	13	1	1680	8412095	8410434	0.000000e+00	2366.0
7	TraesCS7D01G017000	chr7A	91.446	491	34	6	2044	2533	8402742	8402259	0.000000e+00	667.0
8	TraesCS7D01G017000	chr7A	84.553	615	56	26	997	1605	657155088	657155669	8.240000e-160	573.0
9	TraesCS7D01G017000	chr7A	90.476	315	28	2	1678	1991	8403484	8403171	5.290000e-112	414.0
10	TraesCS7D01G017000	chr7A	90.476	315	28	2	1678	1991	8410296	8409983	5.290000e-112	414.0
11	TraesCS7D01G017000	chr7A	96.154	182	7	0	2473	2654	8402259	8402078	5.550000e-77	298.0
12	TraesCS7D01G017000	chr4A	92.285	1335	56	13	343	1670	732790027	732788733	0.000000e+00	1851.0
13	TraesCS7D01G017000	chr4A	91.141	982	77	7	1678	2654	732788116	732787140	0.000000e+00	1323.0
14	TraesCS7D01G017000	chr4A	92.486	346	20	2	1	346	732790526	732790187	8.540000e-135	490.0
15	TraesCS7D01G017000	chr7B	84.065	615	62	21	997	1605	624246332	624246916	6.420000e-156	560.0
16	TraesCS7D01G017000	chr7B	93.182	44	3	0	1565	1608	624791144	624791187	6.130000e-07	65.8
17	TraesCS7D01G017000	chr7B	81.111	90	8	9	1818	1903	392641915	392641831	2.210000e-06	63.9
18	TraesCS7D01G017000	chr7B	87.500	56	5	2	1815	1869	532270012	532269958	2.210000e-06	63.9
19	TraesCS7D01G017000	chr6A	77.419	310	36	26	1114	1415	482620188	482619905	1.270000e-33	154.0
20	TraesCS7D01G017000	chr6D	77.199	307	39	23	1114	1415	342472966	342472686	1.650000e-32	150.0
21	TraesCS7D01G017000	chr3A	77.953	254	42	11	1111	1363	482184062	482183822	2.130000e-31	147.0
22	TraesCS7D01G017000	chr3D	77.470	253	43	11	1111	1362	362069956	362069717	3.560000e-29	139.0
23	TraesCS7D01G017000	chr1B	83.951	81	12	1	1817	1897	439405476	439405555	2.830000e-10	76.8
24	TraesCS7D01G017000	chr4D	93.182	44	2	1	1818	1861	15726225	15726267	2.210000e-06	63.9
25	TraesCS7D01G017000	chr2D	92.500	40	3	0	1818	1857	129911077	129911038	1.030000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G017000	chr7D	7464460	7467113	2653	True	4902.000000	4902	100.000000	1	2654	1	chr7D.!!$R2	2653
1	TraesCS7D01G017000	chr7D	568419667	568420390	723	False	562.000000	562	81.057000	846	1612	1	chr7D.!!$F2	766
2	TraesCS7D01G017000	chr7A	8409983	8412095	2112	True	1390.000000	2366	91.394000	1	1991	2	chr7A.!!$R2	1990
3	TraesCS7D01G017000	chr7A	8402078	8405283	3205	True	936.250000	2366	92.597000	1	2654	4	chr7A.!!$R1	2653
4	TraesCS7D01G017000	chr7A	657155088	657155669	581	False	573.000000	573	84.553000	997	1605	1	chr7A.!!$F1	608
5	TraesCS7D01G017000	chr4A	732787140	732790526	3386	True	1221.333333	1851	91.970667	1	2654	3	chr4A.!!$R1	2653
6	TraesCS7D01G017000	chr7B	624246332	624246916	584	False	560.000000	560	84.065000	997	1605	1	chr7B.!!$F1	608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
418	587	0.39382	CTTGCAAATGTGGCAGGGTT	59.606	50.0	0.0	0.0	43.05	4.11	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2002	2853	0.465642	GAGGGATTTGGCGGTTAGGG	60.466	60.0	0.0	0.0	0.0	3.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
111	116	3.950087	CACTTATGCAAGCTCGCAATA	57.050	42.857	2.04	0.00	46.87	1.90
112	117	3.611517	CACTTATGCAAGCTCGCAATAC	58.388	45.455	2.04	0.00	46.87	1.89
221	226	8.101654	ACTGCTACTATGATACTTGTACTAGC	57.898	38.462	4.10	0.38	0.00	3.42
222	227	7.940137	ACTGCTACTATGATACTTGTACTAGCT	59.060	37.037	4.10	0.00	0.00	3.32
223	228	9.438228	CTGCTACTATGATACTTGTACTAGCTA	57.562	37.037	4.10	0.00	0.00	3.32
224	229	9.438228	TGCTACTATGATACTTGTACTAGCTAG	57.562	37.037	19.44	19.44	0.00	3.42
239	244	6.049955	ACTAGCTAGCATTTGGTTAGTTCA	57.950	37.500	20.91	0.00	33.25	3.18
348	517	7.289084	TCAAATATACACCTGGCATCTACTACA	59.711	37.037	0.00	0.00	0.00	2.74
415	584	2.529780	TTTCTTGCAAATGTGGCAGG	57.470	45.000	0.00	0.00	43.05	4.85
417	586	0.469705	TCTTGCAAATGTGGCAGGGT	60.470	50.000	0.00	0.00	43.05	4.34
418	587	0.393820	CTTGCAAATGTGGCAGGGTT	59.606	50.000	0.00	0.00	43.05	4.11
419	588	1.617850	CTTGCAAATGTGGCAGGGTTA	59.382	47.619	0.00	0.00	43.05	2.85
469	638	2.983192	TCCTTAACCAACCACCATCTGA	59.017	45.455	0.00	0.00	0.00	3.27
470	639	3.396276	TCCTTAACCAACCACCATCTGAA	59.604	43.478	0.00	0.00	0.00	3.02
487	656	8.462016	ACCATCTGAATCTTTTATACTGCAAAC	58.538	33.333	0.00	0.00	0.00	2.93
519	688	0.654160	ATCAATGCACATCTGTCGCG	59.346	50.000	0.00	0.00	0.00	5.87
538	707	2.928116	GCGTCGATGGCTTAACTACTTT	59.072	45.455	6.79	0.00	0.00	2.66
586	755	5.251764	CCTTTGATCTTCACCAATCTGTCT	58.748	41.667	0.00	0.00	0.00	3.41
613	782	7.591006	TTGACTTATATCGACTTTGTTGTCC	57.409	36.000	0.00	0.00	33.70	4.02
652	825	7.998753	AATAATTAGCTTGAAATTGCTCTGC	57.001	32.000	0.00	0.00	40.35	4.26
689	862	7.118723	TCACATTCACCTGCTTCCTAATTAAT	58.881	34.615	0.00	0.00	0.00	1.40
690	863	7.283127	TCACATTCACCTGCTTCCTAATTAATC	59.717	37.037	0.00	0.00	0.00	1.75
691	864	6.260936	ACATTCACCTGCTTCCTAATTAATCG	59.739	38.462	0.00	0.00	0.00	3.34
692	865	4.127171	TCACCTGCTTCCTAATTAATCGC	58.873	43.478	0.00	0.00	0.00	4.58
693	866	3.876914	CACCTGCTTCCTAATTAATCGCA	59.123	43.478	0.00	0.00	0.00	5.10
694	867	4.335315	CACCTGCTTCCTAATTAATCGCAA	59.665	41.667	0.00	0.00	0.00	4.85
695	868	4.947388	ACCTGCTTCCTAATTAATCGCAAA	59.053	37.500	0.00	0.00	0.00	3.68
696	869	5.417580	ACCTGCTTCCTAATTAATCGCAAAA	59.582	36.000	0.00	0.00	0.00	2.44
697	870	6.071616	ACCTGCTTCCTAATTAATCGCAAAAA	60.072	34.615	0.00	0.00	0.00	1.94
747	923	4.643334	TCACACGTAAGACATATAGGCAGT	59.357	41.667	0.00	0.00	43.62	4.40
748	924	4.740205	CACACGTAAGACATATAGGCAGTG	59.260	45.833	0.00	0.00	43.62	3.66
749	925	3.736252	CACGTAAGACATATAGGCAGTGC	59.264	47.826	6.55	6.55	43.62	4.40
771	947	2.170166	GTTGAGGATGCATTTGGACCA	58.830	47.619	0.00	0.00	0.00	4.02
780	956	1.067516	GCATTTGGACCATTGATCCGG	59.932	52.381	0.00	0.00	39.30	5.14
862	1038	0.606604	GAAGGGTAGACGACTTGGCA	59.393	55.000	0.00	0.00	0.00	4.92
893	1072	2.926778	AGATCCCATGCTTGCTACTC	57.073	50.000	0.00	0.00	0.00	2.59
900	1079	7.788867	AGATCCCATGCTTGCTACTCTATATAT	59.211	37.037	0.00	0.00	0.00	0.86
901	1080	9.083422	GATCCCATGCTTGCTACTCTATATATA	57.917	37.037	0.00	0.00	0.00	0.86
966	1149	5.571285	ACGATAGGGATTAGTATCTGAGCA	58.429	41.667	0.00	0.00	43.77	4.26
972	1155	5.480073	AGGGATTAGTATCTGAGCAAGCTAG	59.520	44.000	0.00	0.00	0.00	3.42
1067	1255	1.826487	GAGGAGGAGGAGTCGAGCC	60.826	68.421	0.00	0.00	0.00	4.70
1137	1340	1.531149	CACATGTTCGACAAGGTGGTC	59.469	52.381	0.00	0.00	35.30	4.02
1467	1670	1.289380	CGGAATAGTAGCCTCGGCC	59.711	63.158	3.92	0.00	43.17	6.13
1661	1864	0.755686	ATGAGAAGATGACCTCCGCC	59.244	55.000	0.00	0.00	0.00	6.13
1670	1889	3.240134	GACCTCCGCCTGTGCTTCA	62.240	63.158	0.00	0.00	34.43	3.02
1671	1890	2.743928	CCTCCGCCTGTGCTTCAC	60.744	66.667	0.00	0.00	34.43	3.18
1672	1891	2.345244	CTCCGCCTGTGCTTCACT	59.655	61.111	0.00	0.00	35.11	3.41
1674	1893	1.572085	CTCCGCCTGTGCTTCACTTG	61.572	60.000	0.00	0.00	35.11	3.16
1675	1894	2.253452	CGCCTGTGCTTCACTTGC	59.747	61.111	0.00	0.91	35.11	4.01
1676	1895	2.647297	GCCTGTGCTTCACTTGCC	59.353	61.111	0.00	0.00	35.11	4.52
1682	2510	2.295349	CTGTGCTTCACTTGCCTGAATT	59.705	45.455	0.00	0.00	35.11	2.17
1685	2513	2.034939	TGCTTCACTTGCCTGAATTGTG	59.965	45.455	0.00	0.00	29.71	3.33
1700	2528	6.974048	CCTGAATTGTGCAATTATTTCGATCA	59.026	34.615	9.78	1.94	40.77	2.92
1748	2576	9.000486	CCCCTAAATCTAACTCCGATTAAAATC	58.000	37.037	0.00	0.00	31.27	2.17
1835	2663	0.326595	TTAAGGGCATCTCCAACGCA	59.673	50.000	0.00	0.00	36.21	5.24
1836	2664	0.107703	TAAGGGCATCTCCAACGCAG	60.108	55.000	0.00	0.00	36.21	5.18
1979	2808	4.742201	GAGTGAGCTTCGCGGGCA	62.742	66.667	22.26	5.66	30.95	5.36
2007	2858	4.132441	CGCCACGTACGCCCCTAA	62.132	66.667	16.72	0.00	0.00	2.69
2008	2859	2.510012	GCCACGTACGCCCCTAAC	60.510	66.667	16.72	0.00	0.00	2.34
2009	2860	2.185093	CCACGTACGCCCCTAACC	59.815	66.667	16.72	0.00	0.00	2.85
2010	2861	2.202650	CACGTACGCCCCTAACCG	60.203	66.667	16.72	0.00	0.00	4.44
2011	2862	4.133796	ACGTACGCCCCTAACCGC	62.134	66.667	16.72	0.00	0.00	5.68
2012	2863	4.878682	CGTACGCCCCTAACCGCC	62.879	72.222	0.52	0.00	0.00	6.13
2041	3292	3.122480	TCCCCAAAATCCTCTCAGCATA	58.878	45.455	0.00	0.00	0.00	3.14
2042	3293	3.527253	TCCCCAAAATCCTCTCAGCATAA	59.473	43.478	0.00	0.00	0.00	1.90
2097	3348	0.108186	TTCATGCTAGTCAGGCCGTG	60.108	55.000	0.00	0.00	0.00	4.94
2103	3354	2.564553	CTAGTCAGGCCGTGGCAGAC	62.565	65.000	21.19	21.19	43.29	3.51
2105	3356	3.555324	TCAGGCCGTGGCAGACAA	61.555	61.111	13.76	0.00	44.11	3.18
2109	3360	2.280797	GCCGTGGCAGACAAGACA	60.281	61.111	5.89	0.00	41.49	3.41
2232	3483	2.282391	ACCGCATTGAAGCCAGCA	60.282	55.556	0.00	0.00	0.00	4.41
2261	3512	1.293963	CGGCACATATGATGGAGGCG	61.294	60.000	10.38	12.78	45.74	5.52
2286	3537	0.999712	TGGGGATGGGAAGTTCCTTC	59.000	55.000	21.25	16.95	39.52	3.46
2297	3548	3.282885	GAAGTTCCTTCTGCCATTAGGG	58.717	50.000	0.00	0.00	37.49	3.53
2298	3549	2.562296	AGTTCCTTCTGCCATTAGGGA	58.438	47.619	0.00	0.00	40.01	4.20
2319	3570	3.296322	TGCGCAAAATTTCCCAACTAG	57.704	42.857	8.16	0.00	0.00	2.57
2320	3571	1.992667	GCGCAAAATTTCCCAACTAGC	59.007	47.619	0.30	0.00	0.00	3.42
2616	3927	9.508642	TGATACTAATGTACACACAAAAATCCA	57.491	29.630	0.00	0.00	38.42	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
111	116	2.498078	GCAACTAGGCTAGGAGAAGTGT	59.502	50.000	24.57	0.00	0.00	3.55
112	117	2.497675	TGCAACTAGGCTAGGAGAAGTG	59.502	50.000	24.57	12.97	34.04	3.16
221	226	5.182001	AGCTGTTGAACTAACCAAATGCTAG	59.818	40.000	0.00	0.00	38.55	3.42
222	227	5.070001	AGCTGTTGAACTAACCAAATGCTA	58.930	37.500	0.00	0.00	38.55	3.49
223	228	3.891366	AGCTGTTGAACTAACCAAATGCT	59.109	39.130	0.00	0.00	38.55	3.79
224	229	4.243007	AGCTGTTGAACTAACCAAATGC	57.757	40.909	0.00	0.00	38.55	3.56
239	244	3.019564	GTTAGATGGGATGCAAGCTGTT	58.980	45.455	0.00	0.00	0.00	3.16
310	316	9.739276	CAGGTGTATATTTGACCCATGTATATT	57.261	33.333	0.00	0.00	0.00	1.28
348	517	5.996644	TGGTAAACGACAATTGGGATAGAT	58.003	37.500	10.83	0.00	0.00	1.98
487	656	5.761003	TGTGCATTGATAGATAATTTGCCG	58.239	37.500	0.00	0.00	0.00	5.69
519	688	5.857822	AACAAAGTAGTTAAGCCATCGAC	57.142	39.130	0.00	0.00	0.00	4.20
538	707	3.133362	ACAGGTCCTCGTCAAGTTAAACA	59.867	43.478	0.00	0.00	0.00	2.83
567	736	7.550551	GTCAATTAGACAGATTGGTGAAGATCA	59.449	37.037	0.00	0.00	46.77	2.92
652	825	1.811965	TGAATGTGAAACCATGAGGCG	59.188	47.619	0.00	0.00	39.06	5.52
695	868	9.209175	TGCCACGCTTAATTTTATGTTAATTTT	57.791	25.926	0.00	0.00	0.00	1.82
696	869	8.652463	GTGCCACGCTTAATTTTATGTTAATTT	58.348	29.630	0.00	0.00	0.00	1.82
697	870	7.008810	CGTGCCACGCTTAATTTTATGTTAATT	59.991	33.333	3.47	0.00	33.65	1.40
698	871	6.470877	CGTGCCACGCTTAATTTTATGTTAAT	59.529	34.615	3.47	0.00	33.65	1.40
699	872	5.795939	CGTGCCACGCTTAATTTTATGTTAA	59.204	36.000	3.47	0.00	33.65	2.01
700	873	5.325494	CGTGCCACGCTTAATTTTATGTTA	58.675	37.500	3.47	0.00	33.65	2.41
701	874	4.162812	CGTGCCACGCTTAATTTTATGTT	58.837	39.130	3.47	0.00	33.65	2.71
702	875	3.753842	CGTGCCACGCTTAATTTTATGT	58.246	40.909	3.47	0.00	33.65	2.29
734	910	3.797039	TCAACTGCACTGCCTATATGTC	58.203	45.455	0.00	0.00	0.00	3.06
742	918	1.930908	GCATCCTCAACTGCACTGCC	61.931	60.000	0.00	0.00	38.28	4.85
748	924	1.820519	TCCAAATGCATCCTCAACTGC	59.179	47.619	0.00	0.00	38.87	4.40
749	925	2.165030	GGTCCAAATGCATCCTCAACTG	59.835	50.000	0.00	0.00	0.00	3.16
771	947	2.838736	CCGTTGATTCTCCGGATCAAT	58.161	47.619	19.19	13.91	44.41	2.57
780	956	4.271291	GGTTAATCTCAGCCGTTGATTCTC	59.729	45.833	0.00	0.00	34.68	2.87
815	991	0.539051	ACTCTCTGTATGCCAGGCAC	59.461	55.000	19.10	5.54	43.04	5.01
862	1038	3.703052	GCATGGGATCTTTGTGATTTCCT	59.297	43.478	0.00	0.00	35.14	3.36
957	1140	7.503902	TCAACTTATCTCTAGCTTGCTCAGATA	59.496	37.037	14.96	14.96	0.00	1.98
959	1142	5.654209	TCAACTTATCTCTAGCTTGCTCAGA	59.346	40.000	0.00	2.67	0.00	3.27
961	1144	5.654209	TCTCAACTTATCTCTAGCTTGCTCA	59.346	40.000	0.00	0.00	0.00	4.26
962	1145	6.142818	TCTCAACTTATCTCTAGCTTGCTC	57.857	41.667	0.00	0.00	0.00	4.26
966	1149	6.071108	TGCAACTCTCAACTTATCTCTAGCTT	60.071	38.462	0.00	0.00	0.00	3.74
972	1155	3.305629	CGCTGCAACTCTCAACTTATCTC	59.694	47.826	0.00	0.00	0.00	2.75
1612	1815	2.042831	GCAAATCCAGAGGCAGCGT	61.043	57.895	0.00	0.00	0.00	5.07
1620	1823	2.751259	CAAAGCTAGCTGCAAATCCAGA	59.249	45.455	20.16	0.00	45.94	3.86
1661	1864	1.311859	TTCAGGCAAGTGAAGCACAG	58.688	50.000	0.00	0.00	36.74	3.66
1674	1893	5.101628	TCGAAATAATTGCACAATTCAGGC	58.898	37.500	11.69	1.58	40.99	4.85
1675	1894	6.974048	TGATCGAAATAATTGCACAATTCAGG	59.026	34.615	11.69	0.49	40.99	3.86
1676	1895	7.974243	TGATCGAAATAATTGCACAATTCAG	57.026	32.000	11.69	2.06	40.99	3.02
1682	2510	7.087409	AGTGATTGATCGAAATAATTGCACA	57.913	32.000	0.00	0.00	0.00	4.57
1700	2528	8.514504	AGGGGATGGATTAGATTTAAAGTGATT	58.485	33.333	0.00	0.00	0.00	2.57
1748	2576	6.924060	GCTCCACTTATTATATACATAGGCCG	59.076	42.308	0.00	0.00	0.00	6.13
1749	2577	7.147549	TGGCTCCACTTATTATATACATAGGCC	60.148	40.741	0.00	0.00	0.00	5.19
1751	2579	9.823647	CTTGGCTCCACTTATTATATACATAGG	57.176	37.037	0.00	0.00	0.00	2.57
1835	2663	2.032071	CGGGCGTTTTGAGGGTCT	59.968	61.111	0.00	0.00	0.00	3.85
1836	2664	3.733960	GCGGGCGTTTTGAGGGTC	61.734	66.667	0.00	0.00	0.00	4.46
1935	2764	1.373590	CGTCCGGATTGCGGGATTTT	61.374	55.000	16.99	0.00	44.19	1.82
1991	2842	2.510012	GTTAGGGGCGTACGTGGC	60.510	66.667	17.90	0.71	0.00	5.01
1992	2843	2.185093	GGTTAGGGGCGTACGTGG	59.815	66.667	17.90	0.00	0.00	4.94
1993	2844	2.202650	CGGTTAGGGGCGTACGTG	60.203	66.667	17.90	0.00	0.00	4.49
1994	2845	4.133796	GCGGTTAGGGGCGTACGT	62.134	66.667	17.90	0.00	0.00	3.57
1995	2846	4.878682	GGCGGTTAGGGGCGTACG	62.879	72.222	11.84	11.84	0.00	3.67
1996	2847	2.801483	TTTGGCGGTTAGGGGCGTAC	62.801	60.000	0.00	0.00	0.00	3.67
1997	2848	1.912826	ATTTGGCGGTTAGGGGCGTA	61.913	55.000	0.00	0.00	0.00	4.42
1998	2849	3.276642	ATTTGGCGGTTAGGGGCGT	62.277	57.895	0.00	0.00	0.00	5.68
1999	2850	2.439519	ATTTGGCGGTTAGGGGCG	60.440	61.111	0.00	0.00	0.00	6.13
2000	2851	2.125326	GGATTTGGCGGTTAGGGGC	61.125	63.158	0.00	0.00	0.00	5.80
2001	2852	1.455032	GGGATTTGGCGGTTAGGGG	60.455	63.158	0.00	0.00	0.00	4.79
2002	2853	0.465642	GAGGGATTTGGCGGTTAGGG	60.466	60.000	0.00	0.00	0.00	3.53
2003	2854	0.465642	GGAGGGATTTGGCGGTTAGG	60.466	60.000	0.00	0.00	0.00	2.69
2004	2855	0.465642	GGGAGGGATTTGGCGGTTAG	60.466	60.000	0.00	0.00	0.00	2.34
2005	2856	1.610873	GGGAGGGATTTGGCGGTTA	59.389	57.895	0.00	0.00	0.00	2.85
2006	2857	2.359011	GGGAGGGATTTGGCGGTT	59.641	61.111	0.00	0.00	0.00	4.44
2007	2858	3.739613	GGGGAGGGATTTGGCGGT	61.740	66.667	0.00	0.00	0.00	5.68
2008	2859	2.796734	TTTGGGGAGGGATTTGGCGG	62.797	60.000	0.00	0.00	0.00	6.13
2009	2860	0.902516	TTTTGGGGAGGGATTTGGCG	60.903	55.000	0.00	0.00	0.00	5.69
2010	2861	1.486310	GATTTTGGGGAGGGATTTGGC	59.514	52.381	0.00	0.00	0.00	4.52
2011	2862	2.118679	GGATTTTGGGGAGGGATTTGG	58.881	52.381	0.00	0.00	0.00	3.28
2012	2863	3.033909	GAGGATTTTGGGGAGGGATTTG	58.966	50.000	0.00	0.00	0.00	2.32
2097	3348	1.002430	TGGAGTCATGTCTTGTCTGCC	59.998	52.381	0.00	0.00	32.31	4.85
2103	3354	1.741706	GCCATGTGGAGTCATGTCTTG	59.258	52.381	2.55	0.00	42.29	3.02
2105	3356	0.986527	TGCCATGTGGAGTCATGTCT	59.013	50.000	2.55	0.00	42.29	3.41
2109	3360	2.812836	TCAATGCCATGTGGAGTCAT	57.187	45.000	2.55	0.00	37.39	3.06
2261	3512	1.380380	CTTCCCATCCCCAACAGCC	60.380	63.158	0.00	0.00	0.00	4.85
2286	3537	1.102809	TTGCGCATCCCTAATGGCAG	61.103	55.000	12.75	0.00	40.38	4.85
2297	3548	2.687370	AGTTGGGAAATTTTGCGCATC	58.313	42.857	12.75	4.88	0.00	3.91
2298	3549	2.837532	AGTTGGGAAATTTTGCGCAT	57.162	40.000	12.75	0.00	0.00	4.73
2367	3623	5.344884	GGAGTAAGAGCACTCTAACACATC	58.655	45.833	0.00	1.14	43.73	3.06
2619	3930	7.229707	CGGCCACTAAGTAGCATAGATCTATAT	59.770	40.741	14.92	9.44	0.00	0.86
2623	3934	3.508012	CGGCCACTAAGTAGCATAGATCT	59.492	47.826	2.24	0.00	0.00	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.