Multiple sequence alignment - TraesCS7D01G016400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G016400 chr7D 100.000 4362 0 0 1 4362 7300794 7296433 0.000000e+00 8056.0
1 TraesCS7D01G016400 chr4A 90.706 2324 163 26 1807 4098 732513162 732510860 0.000000e+00 3046.0
2 TraesCS7D01G016400 chr4A 87.454 271 24 8 1073 1339 725722311 725722047 1.970000e-78 303.0
3 TraesCS7D01G016400 chr4A 80.734 327 38 13 4060 4362 732510855 732510530 9.430000e-57 231.0
4 TraesCS7D01G016400 chr4A 89.899 99 8 2 1722 1818 732513337 732513239 4.580000e-25 126.0
5 TraesCS7D01G016400 chr7A 92.828 1980 107 20 1696 3656 8256266 8254303 0.000000e+00 2837.0
6 TraesCS7D01G016400 chr7A 89.648 454 36 5 28 481 8258832 8258390 6.330000e-158 568.0
7 TraesCS7D01G016400 chr7A 84.583 240 20 8 3836 4060 8253587 8253350 5.680000e-54 222.0
8 TraesCS7D01G016400 chr7A 95.122 123 6 0 3677 3799 8253702 8253580 1.240000e-45 195.0
9 TraesCS7D01G016400 chr7A 93.750 96 3 2 578 671 8259218 8259124 1.640000e-29 141.0
10 TraesCS7D01G016400 chr7A 92.982 57 4 0 513 569 8258383 8258327 2.800000e-12 84.2
11 TraesCS7D01G016400 chr2A 93.096 478 23 6 12 488 160163318 160163786 0.000000e+00 691.0
12 TraesCS7D01G016400 chr2A 92.887 478 24 6 12 488 159930915 159931383 0.000000e+00 686.0
13 TraesCS7D01G016400 chr4B 92.887 478 24 6 12 488 241356939 241357407 0.000000e+00 686.0
14 TraesCS7D01G016400 chr4B 85.284 299 30 12 1036 1333 647726597 647726312 3.300000e-76 296.0
15 TraesCS7D01G016400 chr3B 92.723 481 26 4 2 482 242895527 242895056 0.000000e+00 686.0
16 TraesCS7D01G016400 chr5A 92.516 481 26 5 2 482 546854664 546854194 0.000000e+00 680.0
17 TraesCS7D01G016400 chr1A 92.516 481 27 4 2 482 570356385 570355914 0.000000e+00 680.0
18 TraesCS7D01G016400 chr1A 88.773 481 25 9 2 482 352021160 352020709 2.950000e-156 562.0
19 TraesCS7D01G016400 chr7B 91.684 481 31 5 2 482 202307126 202307597 0.000000e+00 658.0
20 TraesCS7D01G016400 chr7B 88.000 275 25 6 1075 1345 745129274 745129004 7.040000e-83 318.0
21 TraesCS7D01G016400 chr7B 85.065 308 29 14 1036 1339 105220091 105220385 9.170000e-77 298.0
22 TraesCS7D01G016400 chr1B 87.372 293 23 12 1036 1327 10180250 10180529 1.510000e-84 324.0
23 TraesCS7D01G016400 chr1B 86.861 274 27 7 1073 1342 651060562 651060830 9.170000e-77 298.0
24 TraesCS7D01G016400 chr1B 84.244 311 36 11 1036 1339 495186952 495187256 1.530000e-74 291.0
25 TraesCS7D01G016400 chr6B 86.486 296 20 8 187 482 265641735 265641460 1.520000e-79 307.0
26 TraesCS7D01G016400 chr6B 87.004 277 25 6 1073 1342 127150646 127150374 7.090000e-78 302.0
27 TraesCS7D01G016400 chr6B 77.576 165 29 8 1447 1607 139852482 139852642 4.640000e-15 93.5
28 TraesCS7D01G016400 chr5B 86.364 286 30 7 1075 1356 433314945 433314665 1.970000e-78 303.0
29 TraesCS7D01G016400 chr5B 78.788 165 27 8 1447 1607 678553114 678552954 2.150000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G016400 chr7D 7296433 7300794 4361 True 8056.000000 8056 100.0000 1 4362 1 chr7D.!!$R1 4361
1 TraesCS7D01G016400 chr4A 732510530 732513337 2807 True 1134.333333 3046 87.1130 1722 4362 3 chr4A.!!$R2 2640
2 TraesCS7D01G016400 chr7A 8253350 8259218 5868 True 674.533333 2837 91.4855 28 4060 6 chr7A.!!$R1 4032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 1543 0.024619 GTATTTTCGCGTCGACTGGC 59.975 55.0 14.7 9.69 34.89 4.85 F
1351 2348 0.025770 CAGGTAAAACCGTATGCGCG 59.974 55.0 0.0 0.00 44.90 6.86 F
1826 3234 0.321919 AGTGAACGCCATGCTGACAT 60.322 50.0 0.0 0.00 36.79 3.06 F
1950 3454 0.517316 GCACAAGGAAGCGTCGAAAT 59.483 50.0 0.0 0.00 0.00 2.17 F
2123 3627 0.940126 CTGGCATGGAGTTGTATCGC 59.060 55.0 0.0 0.00 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 3373 0.106318 AGAGATGCCCCCATTTGAGC 60.106 55.000 0.00 0.0 0.00 4.26 R
2375 3879 0.611200 ATCCATCGACCGTTCCAACA 59.389 50.000 0.00 0.0 0.00 3.33 R
2641 4145 1.403323 GTGCTTTAGAGAAGGGCATGC 59.597 52.381 9.90 9.9 35.37 4.06 R
2963 4467 1.414181 ACAGCCTTCCATGTATCCTCG 59.586 52.381 0.00 0.0 0.00 4.63 R
4048 6183 0.254178 ACATGAAGGCCTACTGCTGG 59.746 55.000 5.16 0.0 40.92 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.274157 GTTGATTTCAGTCCTCTACTCAGA 57.726 41.667 0.00 0.00 35.76 3.27
27 28 3.074675 TCAGTCCTCTACTCAGACCAC 57.925 52.381 0.00 0.00 35.76 4.16
28 29 2.645297 TCAGTCCTCTACTCAGACCACT 59.355 50.000 0.00 0.00 35.76 4.00
30 31 4.288887 TCAGTCCTCTACTCAGACCACTAA 59.711 45.833 0.00 0.00 35.76 2.24
31 32 4.396790 CAGTCCTCTACTCAGACCACTAAC 59.603 50.000 0.00 0.00 35.76 2.34
32 33 4.043059 AGTCCTCTACTCAGACCACTAACA 59.957 45.833 0.00 0.00 30.33 2.41
33 34 4.156373 GTCCTCTACTCAGACCACTAACAC 59.844 50.000 0.00 0.00 0.00 3.32
34 35 3.444388 CCTCTACTCAGACCACTAACACC 59.556 52.174 0.00 0.00 0.00 4.16
35 36 4.079970 CTCTACTCAGACCACTAACACCA 58.920 47.826 0.00 0.00 0.00 4.17
37 38 2.679082 ACTCAGACCACTAACACCAGT 58.321 47.619 0.00 0.00 0.00 4.00
38 39 2.628657 ACTCAGACCACTAACACCAGTC 59.371 50.000 0.00 0.00 0.00 3.51
39 40 2.894126 CTCAGACCACTAACACCAGTCT 59.106 50.000 0.00 0.00 38.30 3.24
40 41 3.305720 TCAGACCACTAACACCAGTCTT 58.694 45.455 0.00 0.00 35.67 3.01
44 404 2.633481 ACCACTAACACCAGTCTTCCTC 59.367 50.000 0.00 0.00 0.00 3.71
50 410 2.695585 ACACCAGTCTTCCTCTCCTTT 58.304 47.619 0.00 0.00 0.00 3.11
56 416 2.301583 AGTCTTCCTCTCCTTTGCTGTC 59.698 50.000 0.00 0.00 0.00 3.51
57 417 2.037772 GTCTTCCTCTCCTTTGCTGTCA 59.962 50.000 0.00 0.00 0.00 3.58
58 418 2.909006 TCTTCCTCTCCTTTGCTGTCAT 59.091 45.455 0.00 0.00 0.00 3.06
59 419 2.775911 TCCTCTCCTTTGCTGTCATG 57.224 50.000 0.00 0.00 0.00 3.07
157 517 2.897969 AGGAGGAGTAGAGTGCGAAAAA 59.102 45.455 0.00 0.00 0.00 1.94
159 519 2.994578 GAGGAGTAGAGTGCGAAAAACC 59.005 50.000 0.00 0.00 0.00 3.27
160 520 1.725164 GGAGTAGAGTGCGAAAAACCG 59.275 52.381 0.00 0.00 0.00 4.44
161 521 2.401351 GAGTAGAGTGCGAAAAACCGT 58.599 47.619 0.00 0.00 0.00 4.83
163 523 1.458445 GTAGAGTGCGAAAAACCGTCC 59.542 52.381 0.00 0.00 0.00 4.79
164 524 0.883370 AGAGTGCGAAAAACCGTCCC 60.883 55.000 0.00 0.00 0.00 4.46
165 525 1.153127 AGTGCGAAAAACCGTCCCA 60.153 52.632 0.00 0.00 0.00 4.37
166 526 1.009335 GTGCGAAAAACCGTCCCAC 60.009 57.895 0.00 0.00 0.00 4.61
167 527 2.188161 TGCGAAAAACCGTCCCACC 61.188 57.895 0.00 0.00 0.00 4.61
191 551 2.972505 CGTGTTTCTGCCTGCCGT 60.973 61.111 0.00 0.00 0.00 5.68
200 560 2.244436 CTGCCTGCCGTGTTTCATCG 62.244 60.000 0.00 0.00 0.00 3.84
215 575 1.002142 TCATCGTCTTTGTGTCGTCGT 60.002 47.619 0.00 0.00 0.00 4.34
216 576 1.784856 CATCGTCTTTGTGTCGTCGTT 59.215 47.619 0.00 0.00 0.00 3.85
233 593 4.201576 GTCGTTGTCGTGATTTTGAACTC 58.798 43.478 0.00 0.00 38.33 3.01
265 625 9.574516 AGACTGAATTTTGTAGTGGAGTTAATT 57.425 29.630 0.00 0.00 0.00 1.40
266 626 9.612620 GACTGAATTTTGTAGTGGAGTTAATTG 57.387 33.333 0.00 0.00 0.00 2.32
274 634 7.504926 TGTAGTGGAGTTAATTGTTAGGGAT 57.495 36.000 0.00 0.00 0.00 3.85
325 685 1.487452 GCATATTGTCGCCGCGAGAA 61.487 55.000 25.23 25.23 42.78 2.87
351 711 3.151912 ACGACGCTTATCTACCCCTAT 57.848 47.619 0.00 0.00 0.00 2.57
353 713 4.655963 ACGACGCTTATCTACCCCTATAA 58.344 43.478 0.00 0.00 0.00 0.98
354 714 5.072741 ACGACGCTTATCTACCCCTATAAA 58.927 41.667 0.00 0.00 0.00 1.40
355 715 5.182760 ACGACGCTTATCTACCCCTATAAAG 59.817 44.000 0.00 0.00 0.00 1.85
356 716 5.392811 CGACGCTTATCTACCCCTATAAAGG 60.393 48.000 0.00 0.00 43.25 3.11
357 717 4.222366 ACGCTTATCTACCCCTATAAAGGC 59.778 45.833 0.00 0.00 42.14 4.35
358 718 4.466726 CGCTTATCTACCCCTATAAAGGCT 59.533 45.833 0.00 0.00 42.14 4.58
359 719 5.624738 CGCTTATCTACCCCTATAAAGGCTG 60.625 48.000 0.00 0.00 42.14 4.85
360 720 5.484290 GCTTATCTACCCCTATAAAGGCTGA 59.516 44.000 0.00 0.00 42.14 4.26
361 721 6.013639 GCTTATCTACCCCTATAAAGGCTGAA 60.014 42.308 0.00 0.00 42.14 3.02
362 722 7.554959 TTATCTACCCCTATAAAGGCTGAAG 57.445 40.000 0.00 0.00 42.14 3.02
363 723 5.152306 TCTACCCCTATAAAGGCTGAAGA 57.848 43.478 0.00 0.00 42.14 2.87
364 724 4.900054 TCTACCCCTATAAAGGCTGAAGAC 59.100 45.833 0.00 0.00 42.14 3.01
365 725 3.737263 ACCCCTATAAAGGCTGAAGACT 58.263 45.455 0.00 0.00 42.14 3.24
366 726 3.712218 ACCCCTATAAAGGCTGAAGACTC 59.288 47.826 0.00 0.00 42.14 3.36
367 727 3.243907 CCCCTATAAAGGCTGAAGACTCG 60.244 52.174 0.00 0.00 42.14 4.18
368 728 3.243907 CCCTATAAAGGCTGAAGACTCGG 60.244 52.174 0.00 0.00 42.14 4.63
382 742 5.011738 TGAAGACTCGGAAGTATTTGAGGTT 59.988 40.000 0.00 0.00 37.08 3.50
400 760 5.476599 TGAGGTTAAAACAGGACATGAATGG 59.523 40.000 0.00 0.00 0.00 3.16
408 768 1.771255 AGGACATGAATGGGCTCTACC 59.229 52.381 0.00 0.00 37.93 3.18
412 772 2.769663 ACATGAATGGGCTCTACCGTTA 59.230 45.455 0.00 0.00 39.78 3.18
418 778 4.706842 ATGGGCTCTACCGTTAAATGAT 57.293 40.909 0.00 0.00 40.62 2.45
426 786 7.012989 GGCTCTACCGTTAAATGATTTGGTTAT 59.987 37.037 0.00 0.00 0.00 1.89
446 806 1.951602 TGCATCTACATTGCATGCCTC 59.048 47.619 16.68 0.00 44.73 4.70
452 812 1.089920 ACATTGCATGCCTCGTCTTC 58.910 50.000 16.68 0.00 0.00 2.87
455 815 1.896220 TTGCATGCCTCGTCTTCTTT 58.104 45.000 16.68 0.00 0.00 2.52
472 832 7.148885 CGTCTTCTTTAGCTGTTCTAAGAGTTG 60.149 40.741 0.00 0.00 38.41 3.16
481 841 3.315191 TGTTCTAAGAGTTGTTTGCTGCC 59.685 43.478 0.00 0.00 0.00 4.85
482 842 2.504367 TCTAAGAGTTGTTTGCTGCCC 58.496 47.619 0.00 0.00 0.00 5.36
484 844 1.035139 AAGAGTTGTTTGCTGCCCAG 58.965 50.000 0.00 0.00 0.00 4.45
485 845 0.825010 AGAGTTGTTTGCTGCCCAGG 60.825 55.000 0.00 0.00 0.00 4.45
486 846 2.029518 GTTGTTTGCTGCCCAGGC 59.970 61.111 0.38 0.38 42.35 4.85
496 856 2.832201 GCCCAGGCAGGAATCAGC 60.832 66.667 3.12 0.00 41.22 4.26
497 857 3.004951 CCCAGGCAGGAATCAGCT 58.995 61.111 0.00 0.00 41.22 4.24
498 858 1.453379 CCCAGGCAGGAATCAGCTG 60.453 63.158 7.63 7.63 41.22 4.24
499 859 1.453379 CCAGGCAGGAATCAGCTGG 60.453 63.158 15.13 0.00 41.22 4.85
500 860 1.605992 CAGGCAGGAATCAGCTGGA 59.394 57.895 15.13 0.57 0.00 3.86
501 861 0.183014 CAGGCAGGAATCAGCTGGAT 59.817 55.000 15.13 2.41 38.05 3.41
502 862 0.183014 AGGCAGGAATCAGCTGGATG 59.817 55.000 15.13 6.99 36.02 3.51
503 863 0.182061 GGCAGGAATCAGCTGGATGA 59.818 55.000 15.13 0.00 36.02 2.92
504 864 1.202903 GGCAGGAATCAGCTGGATGAT 60.203 52.381 15.13 0.00 41.72 2.45
553 913 8.678199 TCCAAAATGTGTTGCATTCGTTATATA 58.322 29.630 0.00 0.00 46.29 0.86
557 917 5.429130 TGTGTTGCATTCGTTATATACCCA 58.571 37.500 0.00 0.00 0.00 4.51
563 923 6.684686 TGCATTCGTTATATACCCAGACTAC 58.315 40.000 0.00 0.00 0.00 2.73
564 924 6.265876 TGCATTCGTTATATACCCAGACTACA 59.734 38.462 0.00 0.00 0.00 2.74
569 929 7.005902 TCGTTATATACCCAGACTACATCCAA 58.994 38.462 0.00 0.00 0.00 3.53
571 931 7.039923 CGTTATATACCCAGACTACATCCAAGT 60.040 40.741 0.00 0.00 0.00 3.16
572 932 6.919775 ATATACCCAGACTACATCCAAGTC 57.080 41.667 0.00 0.00 43.06 3.01
585 1249 1.986882 CCAAGTCTGGAGGCTGTTTT 58.013 50.000 0.00 0.00 46.92 2.43
596 1260 3.565516 GAGGCTGTTTTTCAACGATTCC 58.434 45.455 0.00 0.00 35.40 3.01
601 1265 4.853743 GCTGTTTTTCAACGATTCCTGATC 59.146 41.667 0.00 0.00 35.40 2.92
621 1285 1.479323 CCAGGAGTTGATGGGCAAATG 59.521 52.381 0.00 0.00 38.44 2.32
634 1298 2.472816 GGCAAATGGAATAATGCACGG 58.527 47.619 0.00 0.00 40.04 4.94
691 1360 4.855340 TCTTTTTGGAGTCTGAACACCTT 58.145 39.130 0.00 0.00 37.09 3.50
692 1361 5.996644 TCTTTTTGGAGTCTGAACACCTTA 58.003 37.500 0.00 0.00 37.09 2.69
693 1362 6.419791 TCTTTTTGGAGTCTGAACACCTTAA 58.580 36.000 0.00 0.00 37.09 1.85
694 1363 6.542370 TCTTTTTGGAGTCTGAACACCTTAAG 59.458 38.462 0.00 0.00 37.09 1.85
695 1364 5.623956 TTTGGAGTCTGAACACCTTAAGA 57.376 39.130 3.36 0.00 37.09 2.10
696 1365 5.825593 TTGGAGTCTGAACACCTTAAGAT 57.174 39.130 3.36 0.00 37.09 2.40
697 1366 5.152623 TGGAGTCTGAACACCTTAAGATG 57.847 43.478 3.36 0.00 37.09 2.90
699 1368 3.935828 GAGTCTGAACACCTTAAGATGCC 59.064 47.826 3.36 0.00 0.00 4.40
700 1369 3.584848 AGTCTGAACACCTTAAGATGCCT 59.415 43.478 3.36 0.00 0.00 4.75
702 1371 4.870991 GTCTGAACACCTTAAGATGCCTAC 59.129 45.833 3.36 0.00 0.00 3.18
703 1372 4.777896 TCTGAACACCTTAAGATGCCTACT 59.222 41.667 3.36 0.00 0.00 2.57
704 1373 5.955959 TCTGAACACCTTAAGATGCCTACTA 59.044 40.000 3.36 0.00 0.00 1.82
705 1374 5.974108 TGAACACCTTAAGATGCCTACTAC 58.026 41.667 3.36 0.00 0.00 2.73
711 1389 7.720515 ACACCTTAAGATGCCTACTACTACTAG 59.279 40.741 3.36 0.00 0.00 2.57
713 1391 8.943085 ACCTTAAGATGCCTACTACTACTAGTA 58.057 37.037 3.36 1.89 34.79 1.82
734 1412 9.197694 CTAGTATTTCACATTGACATAGTAGGC 57.802 37.037 12.52 0.00 38.34 3.93
736 1414 8.046708 AGTATTTCACATTGACATAGTAGGCAA 58.953 33.333 0.00 0.00 0.00 4.52
740 1418 4.494350 CATTGACATAGTAGGCAATGGC 57.506 45.455 13.33 0.00 42.20 4.40
741 1419 3.931907 TTGACATAGTAGGCAATGGCT 57.068 42.857 15.13 15.13 42.39 4.75
742 1420 3.198409 TGACATAGTAGGCAATGGCTG 57.802 47.619 20.08 5.50 39.30 4.85
743 1421 2.505407 TGACATAGTAGGCAATGGCTGT 59.495 45.455 20.08 8.98 39.30 4.40
744 1422 3.054434 TGACATAGTAGGCAATGGCTGTT 60.054 43.478 20.08 9.61 39.30 3.16
751 1429 3.353600 CAATGGCTGTTGCACCGA 58.646 55.556 0.00 0.00 41.91 4.69
752 1430 1.659233 CAATGGCTGTTGCACCGAA 59.341 52.632 0.00 0.00 41.91 4.30
753 1431 0.664166 CAATGGCTGTTGCACCGAAC 60.664 55.000 0.00 0.00 41.91 3.95
754 1432 1.106351 AATGGCTGTTGCACCGAACA 61.106 50.000 0.00 0.00 41.91 3.18
756 1434 1.008538 GGCTGTTGCACCGAACAAG 60.009 57.895 0.00 0.00 41.91 3.16
757 1435 1.724582 GGCTGTTGCACCGAACAAGT 61.725 55.000 0.00 0.00 41.91 3.16
759 1437 1.069906 GCTGTTGCACCGAACAAGTAG 60.070 52.381 0.00 0.00 35.44 2.57
761 1439 2.206750 TGTTGCACCGAACAAGTAGAC 58.793 47.619 0.00 0.00 32.84 2.59
767 1456 3.547413 GCACCGAACAAGTAGACAAAACC 60.547 47.826 0.00 0.00 0.00 3.27
769 1458 2.349155 CCGAACAAGTAGACAAAACCGC 60.349 50.000 0.00 0.00 0.00 5.68
777 1466 2.359478 ACAAAACCGCCGGCTAGG 60.359 61.111 26.68 21.88 44.97 3.02
779 1468 3.324108 AAAACCGCCGGCTAGGGA 61.324 61.111 26.68 0.00 41.48 4.20
780 1469 3.325201 AAAACCGCCGGCTAGGGAG 62.325 63.158 26.68 7.40 41.48 4.30
786 1475 3.631046 CCGGCTAGGGAGGGCATC 61.631 72.222 0.00 0.00 35.97 3.91
788 1477 2.143419 CGGCTAGGGAGGGCATCTT 61.143 63.158 0.00 0.00 0.00 2.40
790 1479 1.435256 GGCTAGGGAGGGCATCTTTA 58.565 55.000 0.00 0.00 0.00 1.85
791 1480 1.349357 GGCTAGGGAGGGCATCTTTAG 59.651 57.143 0.00 2.89 0.00 1.85
792 1481 2.050918 GCTAGGGAGGGCATCTTTAGT 58.949 52.381 0.00 0.00 0.00 2.24
794 1483 3.745797 GCTAGGGAGGGCATCTTTAGTTG 60.746 52.174 0.00 0.00 0.00 3.16
795 1484 1.064389 AGGGAGGGCATCTTTAGTTGC 60.064 52.381 0.00 4.57 39.38 4.17
796 1485 1.064389 GGGAGGGCATCTTTAGTTGCT 60.064 52.381 11.39 0.00 39.85 3.91
798 1487 2.424956 GGAGGGCATCTTTAGTTGCTTG 59.575 50.000 11.39 0.00 39.85 4.01
799 1488 2.424956 GAGGGCATCTTTAGTTGCTTGG 59.575 50.000 11.39 0.00 39.85 3.61
800 1489 1.134995 GGGCATCTTTAGTTGCTTGGC 60.135 52.381 11.39 0.00 39.85 4.52
803 1492 2.729156 GCATCTTTAGTTGCTTGGCGTC 60.729 50.000 5.72 0.00 37.66 5.19
806 1495 0.179015 TTTAGTTGCTTGGCGTCCCA 60.179 50.000 0.00 0.00 40.06 4.37
818 1507 1.006825 GCGTCCCAAACAAAATCGCC 61.007 55.000 0.00 0.00 36.95 5.54
819 1508 0.388006 CGTCCCAAACAAAATCGCCC 60.388 55.000 0.00 0.00 0.00 6.13
820 1509 0.388006 GTCCCAAACAAAATCGCCCG 60.388 55.000 0.00 0.00 0.00 6.13
821 1510 0.537600 TCCCAAACAAAATCGCCCGA 60.538 50.000 0.00 0.00 0.00 5.14
822 1511 0.315568 CCCAAACAAAATCGCCCGAA 59.684 50.000 0.00 0.00 0.00 4.30
823 1512 1.668628 CCCAAACAAAATCGCCCGAAG 60.669 52.381 0.00 0.00 0.00 3.79
824 1513 1.268352 CCAAACAAAATCGCCCGAAGA 59.732 47.619 0.00 0.00 0.00 2.87
825 1514 2.315901 CAAACAAAATCGCCCGAAGAC 58.684 47.619 0.00 0.00 0.00 3.01
828 1517 0.168128 CAAAATCGCCCGAAGACCAC 59.832 55.000 0.00 0.00 0.00 4.16
829 1518 0.036306 AAAATCGCCCGAAGACCACT 59.964 50.000 0.00 0.00 0.00 4.00
830 1519 0.673644 AAATCGCCCGAAGACCACTG 60.674 55.000 0.00 0.00 0.00 3.66
831 1520 1.541310 AATCGCCCGAAGACCACTGA 61.541 55.000 0.00 0.00 0.00 3.41
832 1521 1.330655 ATCGCCCGAAGACCACTGAT 61.331 55.000 0.00 0.00 0.00 2.90
833 1522 1.079127 CGCCCGAAGACCACTGATT 60.079 57.895 0.00 0.00 0.00 2.57
834 1523 1.084370 CGCCCGAAGACCACTGATTC 61.084 60.000 0.00 0.00 0.00 2.52
837 1526 1.475280 CCCGAAGACCACTGATTCGTA 59.525 52.381 5.91 0.00 43.17 3.43
839 1528 3.430374 CCCGAAGACCACTGATTCGTATT 60.430 47.826 5.91 0.00 43.17 1.89
840 1529 4.181578 CCGAAGACCACTGATTCGTATTT 58.818 43.478 5.91 0.00 43.17 1.40
841 1530 4.630069 CCGAAGACCACTGATTCGTATTTT 59.370 41.667 5.91 0.00 43.17 1.82
842 1531 5.220416 CCGAAGACCACTGATTCGTATTTTC 60.220 44.000 5.91 0.00 43.17 2.29
843 1532 5.498700 CGAAGACCACTGATTCGTATTTTCG 60.499 44.000 0.00 0.00 40.58 3.46
844 1533 3.617263 AGACCACTGATTCGTATTTTCGC 59.383 43.478 0.00 0.00 0.00 4.70
845 1534 2.347452 ACCACTGATTCGTATTTTCGCG 59.653 45.455 0.00 0.00 0.00 5.87
846 1535 2.347452 CCACTGATTCGTATTTTCGCGT 59.653 45.455 5.77 0.00 0.00 6.01
847 1536 3.541516 CCACTGATTCGTATTTTCGCGTC 60.542 47.826 5.77 0.00 0.00 5.19
848 1537 2.278094 ACTGATTCGTATTTTCGCGTCG 59.722 45.455 5.77 3.29 0.00 5.12
849 1538 2.517935 TGATTCGTATTTTCGCGTCGA 58.482 42.857 5.77 5.66 0.00 4.20
850 1539 2.277057 TGATTCGTATTTTCGCGTCGAC 59.723 45.455 5.77 5.18 34.89 4.20
851 1540 1.967762 TTCGTATTTTCGCGTCGACT 58.032 45.000 14.70 0.00 34.89 4.18
852 1541 1.253116 TCGTATTTTCGCGTCGACTG 58.747 50.000 14.70 8.46 34.89 3.51
853 1542 0.293723 CGTATTTTCGCGTCGACTGG 59.706 55.000 14.70 5.16 34.89 4.00
854 1543 0.024619 GTATTTTCGCGTCGACTGGC 59.975 55.000 14.70 9.69 34.89 4.85
856 1545 1.626654 ATTTTCGCGTCGACTGGCTG 61.627 55.000 14.70 7.35 34.89 4.85
857 1546 4.717629 TTCGCGTCGACTGGCTGG 62.718 66.667 14.70 0.00 34.89 4.85
859 1548 4.111016 CGCGTCGACTGGCTGGTA 62.111 66.667 14.70 0.00 0.00 3.25
860 1549 2.260434 GCGTCGACTGGCTGGTAA 59.740 61.111 14.70 0.00 0.00 2.85
861 1550 1.373748 GCGTCGACTGGCTGGTAAA 60.374 57.895 14.70 0.00 0.00 2.01
866 1555 2.093783 GTCGACTGGCTGGTAAAATTCG 59.906 50.000 8.70 0.00 0.00 3.34
869 1558 3.306166 CGACTGGCTGGTAAAATTCGTAG 59.694 47.826 0.00 0.00 0.00 3.51
870 1559 3.606687 ACTGGCTGGTAAAATTCGTAGG 58.393 45.455 0.00 0.00 0.00 3.18
871 1560 3.008704 ACTGGCTGGTAAAATTCGTAGGT 59.991 43.478 0.00 0.00 0.00 3.08
874 1563 3.126343 GGCTGGTAAAATTCGTAGGTGTG 59.874 47.826 0.00 0.00 0.00 3.82
875 1564 3.425758 GCTGGTAAAATTCGTAGGTGTGC 60.426 47.826 0.00 0.00 0.00 4.57
876 1565 4.000988 CTGGTAAAATTCGTAGGTGTGCT 58.999 43.478 0.00 0.00 0.00 4.40
878 1567 4.251268 GGTAAAATTCGTAGGTGTGCTCT 58.749 43.478 0.00 0.00 0.00 4.09
880 1569 5.290400 GGTAAAATTCGTAGGTGTGCTCTAC 59.710 44.000 0.00 0.00 35.13 2.59
886 1575 0.956902 TAGGTGTGCTCTACGCGTCA 60.957 55.000 18.63 4.14 43.27 4.35
888 1577 1.344942 GGTGTGCTCTACGCGTCAAG 61.345 60.000 18.63 16.04 43.27 3.02
890 1579 1.211969 GTGCTCTACGCGTCAAGGA 59.788 57.895 18.63 13.42 43.27 3.36
891 1580 0.388134 GTGCTCTACGCGTCAAGGAA 60.388 55.000 18.63 0.00 43.27 3.36
904 1863 6.317893 ACGCGTCAAGGAAAAAGGATAATAAT 59.682 34.615 5.58 0.00 0.00 1.28
905 1864 7.496591 ACGCGTCAAGGAAAAAGGATAATAATA 59.503 33.333 5.58 0.00 0.00 0.98
991 1950 7.619964 AATAAATAAGTGGACGGTTACTTGG 57.380 36.000 16.91 0.00 37.66 3.61
993 1952 2.538512 AAGTGGACGGTTACTTGGTC 57.461 50.000 9.88 0.00 35.91 4.02
994 1953 1.416243 AGTGGACGGTTACTTGGTCA 58.584 50.000 0.00 0.00 32.39 4.02
995 1954 1.069668 AGTGGACGGTTACTTGGTCAC 59.930 52.381 0.00 0.00 32.39 3.67
996 1955 0.393820 TGGACGGTTACTTGGTCACC 59.606 55.000 0.00 0.00 32.39 4.02
997 1956 0.393820 GGACGGTTACTTGGTCACCA 59.606 55.000 0.00 0.00 29.94 4.17
998 1957 1.002773 GGACGGTTACTTGGTCACCAT 59.997 52.381 0.00 0.00 29.94 3.55
999 1958 2.344025 GACGGTTACTTGGTCACCATC 58.656 52.381 0.00 0.00 29.94 3.51
1000 1959 1.337447 ACGGTTACTTGGTCACCATCG 60.337 52.381 0.00 0.00 29.94 3.84
1224 2221 3.109240 GAGGAGTACCGCCTCGTC 58.891 66.667 14.54 2.47 40.30 4.20
1225 2222 2.821688 GAGGAGTACCGCCTCGTCG 61.822 68.421 14.54 0.00 40.30 5.12
1226 2223 2.821366 GGAGTACCGCCTCGTCGA 60.821 66.667 0.00 0.00 31.98 4.20
1227 2224 2.402787 GAGTACCGCCTCGTCGAC 59.597 66.667 5.18 5.18 0.00 4.20
1228 2225 3.105852 GAGTACCGCCTCGTCGACC 62.106 68.421 10.58 0.00 0.00 4.79
1229 2226 3.130160 GTACCGCCTCGTCGACCT 61.130 66.667 10.58 0.00 0.00 3.85
1230 2227 2.821366 TACCGCCTCGTCGACCTC 60.821 66.667 10.58 0.00 0.00 3.85
1235 2232 4.180946 CCTCGTCGACCTCGCCAG 62.181 72.222 10.58 0.00 39.60 4.85
1236 2233 4.180946 CTCGTCGACCTCGCCAGG 62.181 72.222 10.58 0.00 46.87 4.45
1255 2252 2.747855 CGCAAGACCTCAAGGCCC 60.748 66.667 0.00 0.00 39.32 5.80
1342 2339 3.335579 CAGTAGACAGCCAGGTAAAACC 58.664 50.000 0.00 0.00 38.99 3.27
1343 2340 2.028385 AGTAGACAGCCAGGTAAAACCG 60.028 50.000 0.00 0.00 44.90 4.44
1344 2341 0.763035 AGACAGCCAGGTAAAACCGT 59.237 50.000 0.00 0.00 44.90 4.83
1346 2343 2.570302 AGACAGCCAGGTAAAACCGTAT 59.430 45.455 0.00 0.00 44.90 3.06
1351 2348 0.025770 CAGGTAAAACCGTATGCGCG 59.974 55.000 0.00 0.00 44.90 6.86
1367 2364 3.151710 CGGGGCGGGATCAGTGTA 61.152 66.667 0.00 0.00 0.00 2.90
1372 2770 1.947456 GGGCGGGATCAGTGTATTTTC 59.053 52.381 0.00 0.00 0.00 2.29
1373 2771 2.639065 GGCGGGATCAGTGTATTTTCA 58.361 47.619 0.00 0.00 0.00 2.69
1376 2774 4.261197 GGCGGGATCAGTGTATTTTCATTC 60.261 45.833 0.00 0.00 0.00 2.67
1377 2775 4.335315 GCGGGATCAGTGTATTTTCATTCA 59.665 41.667 0.00 0.00 0.00 2.57
1380 2778 6.238211 CGGGATCAGTGTATTTTCATTCAGTC 60.238 42.308 0.00 0.00 0.00 3.51
1393 2791 3.681417 TCATTCAGTCTTTCTGTCGCATG 59.319 43.478 0.00 0.00 43.97 4.06
1405 2803 1.817447 TGTCGCATGGCATGAATTTGA 59.183 42.857 30.69 15.45 0.00 2.69
1407 2805 1.406180 TCGCATGGCATGAATTTGAGG 59.594 47.619 30.69 8.42 0.00 3.86
1436 2834 6.721571 TTGGTTGTTCGAATGACTAATCTC 57.278 37.500 0.00 0.00 0.00 2.75
1485 2883 1.347378 AGAAATTTGCCGTGGCCAATT 59.653 42.857 7.24 15.09 44.68 2.32
1488 2886 1.531739 ATTTGCCGTGGCCAATTCGT 61.532 50.000 7.24 0.00 41.09 3.85
1491 2889 2.740826 CCGTGGCCAATTCGTCGT 60.741 61.111 7.24 0.00 0.00 4.34
1493 2891 1.015085 CCGTGGCCAATTCGTCGTTA 61.015 55.000 7.24 0.00 0.00 3.18
1494 2892 0.791422 CGTGGCCAATTCGTCGTTAA 59.209 50.000 7.24 0.00 0.00 2.01
1523 2921 6.928520 AGATTTTCTTGCAGTTAGGATTTGG 58.071 36.000 0.00 0.00 0.00 3.28
1524 2922 4.519540 TTTCTTGCAGTTAGGATTTGGC 57.480 40.909 0.00 0.00 0.00 4.52
1528 2926 3.712016 TGCAGTTAGGATTTGGCTGTA 57.288 42.857 0.00 0.00 0.00 2.74
1535 2933 7.054124 CAGTTAGGATTTGGCTGTATCCTTAA 58.946 38.462 16.78 9.28 46.64 1.85
1538 2936 6.266131 AGGATTTGGCTGTATCCTTAATCA 57.734 37.500 9.01 0.00 46.64 2.57
1539 2937 6.672593 AGGATTTGGCTGTATCCTTAATCAA 58.327 36.000 9.01 0.00 46.64 2.57
1540 2938 6.547510 AGGATTTGGCTGTATCCTTAATCAAC 59.452 38.462 9.01 0.00 46.64 3.18
1541 2939 6.547510 GGATTTGGCTGTATCCTTAATCAACT 59.452 38.462 0.00 0.00 37.83 3.16
1542 2940 7.255277 GGATTTGGCTGTATCCTTAATCAACTC 60.255 40.741 0.00 0.00 37.83 3.01
1543 2941 5.957771 TGGCTGTATCCTTAATCAACTCT 57.042 39.130 0.00 0.00 0.00 3.24
1544 2942 6.313519 TGGCTGTATCCTTAATCAACTCTT 57.686 37.500 0.00 0.00 0.00 2.85
1545 2943 6.115446 TGGCTGTATCCTTAATCAACTCTTG 58.885 40.000 0.00 0.00 0.00 3.02
1554 2952 2.035530 ATCAACTCTTGGCTAGCTGC 57.964 50.000 15.72 0.00 41.94 5.25
1576 2974 5.458779 TGCGAATGTGATAGAACAATAGTCG 59.541 40.000 0.00 0.00 32.81 4.18
1588 2986 2.120232 CAATAGTCGCTCTGCTTACCG 58.880 52.381 0.00 0.00 0.00 4.02
1589 2987 1.676746 ATAGTCGCTCTGCTTACCGA 58.323 50.000 0.00 0.00 0.00 4.69
1592 2990 0.731417 GTCGCTCTGCTTACCGACTA 59.269 55.000 11.36 0.00 44.64 2.59
1596 2994 2.733517 GCTCTGCTTACCGACTATCAC 58.266 52.381 0.00 0.00 0.00 3.06
1597 2995 2.359531 GCTCTGCTTACCGACTATCACT 59.640 50.000 0.00 0.00 0.00 3.41
1598 2996 3.564644 GCTCTGCTTACCGACTATCACTA 59.435 47.826 0.00 0.00 0.00 2.74
1600 2998 3.564644 TCTGCTTACCGACTATCACTAGC 59.435 47.826 0.00 0.00 0.00 3.42
1602 3000 2.621998 GCTTACCGACTATCACTAGCCA 59.378 50.000 0.00 0.00 0.00 4.75
1603 3001 3.550436 GCTTACCGACTATCACTAGCCAC 60.550 52.174 0.00 0.00 0.00 5.01
1606 3012 2.092321 ACCGACTATCACTAGCCACTCT 60.092 50.000 0.00 0.00 0.00 3.24
1622 3028 3.181467 CCACTCTCAAGATCCTCATGGTC 60.181 52.174 0.00 0.00 34.23 4.02
1635 3041 3.133542 CCTCATGGTCTCTCACATGCTAA 59.866 47.826 0.00 0.00 43.11 3.09
1636 3042 4.370049 CTCATGGTCTCTCACATGCTAAG 58.630 47.826 0.00 0.00 43.11 2.18
1637 3043 4.026052 TCATGGTCTCTCACATGCTAAGA 58.974 43.478 0.00 0.00 43.11 2.10
1638 3044 4.652881 TCATGGTCTCTCACATGCTAAGAT 59.347 41.667 0.00 0.00 43.11 2.40
1639 3045 4.397481 TGGTCTCTCACATGCTAAGATG 57.603 45.455 0.00 0.00 0.00 2.90
1640 3046 3.133542 TGGTCTCTCACATGCTAAGATGG 59.866 47.826 0.00 0.00 0.00 3.51
1641 3047 3.133721 GGTCTCTCACATGCTAAGATGGT 59.866 47.826 0.00 0.00 0.00 3.55
1642 3048 4.383552 GGTCTCTCACATGCTAAGATGGTT 60.384 45.833 0.00 0.00 0.00 3.67
1643 3049 4.569966 GTCTCTCACATGCTAAGATGGTTG 59.430 45.833 0.00 0.00 0.00 3.77
1644 3050 4.467438 TCTCTCACATGCTAAGATGGTTGA 59.533 41.667 0.00 0.00 0.00 3.18
1645 3051 5.046376 TCTCTCACATGCTAAGATGGTTGAA 60.046 40.000 0.00 0.00 0.00 2.69
1646 3052 5.559770 TCTCACATGCTAAGATGGTTGAAA 58.440 37.500 0.00 0.00 0.00 2.69
1647 3053 5.412594 TCTCACATGCTAAGATGGTTGAAAC 59.587 40.000 0.00 0.00 0.00 2.78
1648 3054 5.316167 TCACATGCTAAGATGGTTGAAACT 58.684 37.500 0.00 0.00 0.00 2.66
1649 3055 5.769662 TCACATGCTAAGATGGTTGAAACTT 59.230 36.000 0.00 0.00 0.00 2.66
1650 3056 5.860182 CACATGCTAAGATGGTTGAAACTTG 59.140 40.000 0.00 0.00 0.00 3.16
1651 3057 5.047802 ACATGCTAAGATGGTTGAAACTTGG 60.048 40.000 0.00 0.00 0.00 3.61
1652 3058 4.724399 TGCTAAGATGGTTGAAACTTGGA 58.276 39.130 0.00 0.00 0.00 3.53
1653 3059 5.324409 TGCTAAGATGGTTGAAACTTGGAT 58.676 37.500 0.00 0.00 0.00 3.41
1654 3060 5.415701 TGCTAAGATGGTTGAAACTTGGATC 59.584 40.000 0.00 0.00 0.00 3.36
1655 3061 5.649831 GCTAAGATGGTTGAAACTTGGATCT 59.350 40.000 0.00 0.00 0.00 2.75
1656 3062 6.823689 GCTAAGATGGTTGAAACTTGGATCTA 59.176 38.462 0.00 0.00 0.00 1.98
1657 3063 7.011857 GCTAAGATGGTTGAAACTTGGATCTAG 59.988 40.741 0.00 0.00 0.00 2.43
1658 3064 6.380079 AGATGGTTGAAACTTGGATCTAGT 57.620 37.500 0.00 0.00 0.00 2.57
1659 3065 6.410540 AGATGGTTGAAACTTGGATCTAGTC 58.589 40.000 0.00 0.00 0.00 2.59
1660 3066 5.560722 TGGTTGAAACTTGGATCTAGTCA 57.439 39.130 0.00 0.00 0.00 3.41
1661 3067 5.935945 TGGTTGAAACTTGGATCTAGTCAA 58.064 37.500 0.00 0.00 0.00 3.18
1662 3068 5.997746 TGGTTGAAACTTGGATCTAGTCAAG 59.002 40.000 15.98 15.98 44.14 3.02
1670 3076 6.062434 CTTGGATCTAGTCAAGTAGTACGG 57.938 45.833 11.99 0.00 36.54 4.02
1671 3077 5.363562 TGGATCTAGTCAAGTAGTACGGA 57.636 43.478 0.00 0.00 0.00 4.69
1672 3078 5.121811 TGGATCTAGTCAAGTAGTACGGAC 58.878 45.833 16.00 16.00 0.00 4.79
1673 3079 5.121811 GGATCTAGTCAAGTAGTACGGACA 58.878 45.833 22.10 12.05 32.33 4.02
1674 3080 5.007528 GGATCTAGTCAAGTAGTACGGACAC 59.992 48.000 22.10 0.00 32.33 3.67
1675 3081 4.898320 TCTAGTCAAGTAGTACGGACACA 58.102 43.478 22.10 12.84 32.33 3.72
1676 3082 5.494724 TCTAGTCAAGTAGTACGGACACAT 58.505 41.667 22.10 10.31 32.33 3.21
1677 3083 5.942236 TCTAGTCAAGTAGTACGGACACATT 59.058 40.000 22.10 10.06 32.33 2.71
1678 3084 7.105588 TCTAGTCAAGTAGTACGGACACATTA 58.894 38.462 22.10 10.49 32.33 1.90
1679 3085 6.192234 AGTCAAGTAGTACGGACACATTAG 57.808 41.667 22.10 0.00 32.33 1.73
1680 3086 5.709164 AGTCAAGTAGTACGGACACATTAGT 59.291 40.000 22.10 5.13 32.33 2.24
1681 3087 6.208204 AGTCAAGTAGTACGGACACATTAGTT 59.792 38.462 22.10 0.00 32.33 2.24
1682 3088 7.391554 AGTCAAGTAGTACGGACACATTAGTTA 59.608 37.037 22.10 0.00 32.33 2.24
1686 3092 5.246145 AGTACGGACACATTAGTTAGCTC 57.754 43.478 0.00 0.00 0.00 4.09
1690 3096 4.106197 CGGACACATTAGTTAGCTCAGTC 58.894 47.826 0.00 0.00 0.00 3.51
1692 3098 5.105752 GGACACATTAGTTAGCTCAGTCTG 58.894 45.833 0.00 0.00 0.00 3.51
1693 3099 4.499183 ACACATTAGTTAGCTCAGTCTGC 58.501 43.478 0.00 0.00 0.00 4.26
1694 3100 4.021104 ACACATTAGTTAGCTCAGTCTGCA 60.021 41.667 0.00 0.00 0.00 4.41
1711 3117 6.255237 CAGTCTGCACTGTGACTTTATATGAG 59.745 42.308 12.86 0.00 44.63 2.90
1712 3118 6.153510 AGTCTGCACTGTGACTTTATATGAGA 59.846 38.462 12.86 0.00 40.21 3.27
1718 3124 6.202379 CACTGTGACTTTATATGAGATGCCAG 59.798 42.308 0.32 0.00 0.00 4.85
1720 3126 4.453819 GTGACTTTATATGAGATGCCAGCC 59.546 45.833 0.00 0.00 0.00 4.85
1758 3164 4.582701 TTGAATTGTTGTCCACCATCAC 57.417 40.909 0.00 0.00 0.00 3.06
1760 3166 3.569277 TGAATTGTTGTCCACCATCACAG 59.431 43.478 0.00 0.00 0.00 3.66
1786 3192 4.809958 CAGAGATGGAGTGCAGATTTACAG 59.190 45.833 0.00 0.00 0.00 2.74
1788 3194 3.521126 AGATGGAGTGCAGATTTACAGGT 59.479 43.478 0.00 0.00 0.00 4.00
1789 3195 4.716784 AGATGGAGTGCAGATTTACAGGTA 59.283 41.667 0.00 0.00 0.00 3.08
1790 3196 4.471904 TGGAGTGCAGATTTACAGGTAG 57.528 45.455 0.00 0.00 0.00 3.18
1791 3197 3.198872 GGAGTGCAGATTTACAGGTAGC 58.801 50.000 0.00 0.00 0.00 3.58
1792 3198 3.118592 GGAGTGCAGATTTACAGGTAGCT 60.119 47.826 0.00 0.00 0.00 3.32
1793 3199 3.866651 AGTGCAGATTTACAGGTAGCTG 58.133 45.455 20.16 20.16 0.00 4.24
1794 3200 3.261897 AGTGCAGATTTACAGGTAGCTGT 59.738 43.478 28.84 28.84 41.00 4.40
1795 3201 3.372206 GTGCAGATTTACAGGTAGCTGTG 59.628 47.826 32.44 18.17 38.16 3.66
1798 3204 4.437239 CAGATTTACAGGTAGCTGTGGAG 58.563 47.826 32.44 15.00 38.16 3.86
1814 3222 3.187700 GTGGAGTGCCTATAAGTGAACG 58.812 50.000 0.00 0.00 34.31 3.95
1826 3234 0.321919 AGTGAACGCCATGCTGACAT 60.322 50.000 0.00 0.00 36.79 3.06
1828 3236 0.804364 TGAACGCCATGCTGACATTC 59.196 50.000 0.00 0.00 32.87 2.67
1829 3237 0.804364 GAACGCCATGCTGACATTCA 59.196 50.000 0.00 0.00 32.87 2.57
1874 3369 4.409574 TGTAGGTACAAGAAGTGGGAAACA 59.590 41.667 0.00 0.00 32.40 2.83
1875 3370 4.513406 AGGTACAAGAAGTGGGAAACAA 57.487 40.909 0.00 0.00 0.00 2.83
1876 3371 4.461198 AGGTACAAGAAGTGGGAAACAAG 58.539 43.478 0.00 0.00 0.00 3.16
1877 3372 4.079958 AGGTACAAGAAGTGGGAAACAAGT 60.080 41.667 0.00 0.00 0.00 3.16
1878 3373 4.036380 GGTACAAGAAGTGGGAAACAAGTG 59.964 45.833 0.00 0.00 0.00 3.16
1879 3374 2.427095 ACAAGAAGTGGGAAACAAGTGC 59.573 45.455 0.00 0.00 0.00 4.40
1880 3375 2.689983 CAAGAAGTGGGAAACAAGTGCT 59.310 45.455 0.00 0.00 0.00 4.40
1881 3376 2.576615 AGAAGTGGGAAACAAGTGCTC 58.423 47.619 0.00 0.00 0.00 4.26
1882 3377 2.092429 AGAAGTGGGAAACAAGTGCTCA 60.092 45.455 0.00 0.00 0.00 4.26
1892 3396 1.155859 AAGTGCTCAAATGGGGGCA 59.844 52.632 0.00 0.00 0.00 5.36
1925 3429 1.455383 CCAGCAACGGGAAGCAAACT 61.455 55.000 0.00 0.00 0.00 2.66
1936 3440 2.159114 GGAAGCAAACTTTGGAGCACAA 60.159 45.455 3.69 0.00 35.82 3.33
1950 3454 0.517316 GCACAAGGAAGCGTCGAAAT 59.483 50.000 0.00 0.00 0.00 2.17
2097 3601 4.020617 CACGGAGCTGGAAGGCCA 62.021 66.667 5.01 0.00 43.47 5.36
2123 3627 0.940126 CTGGCATGGAGTTGTATCGC 59.060 55.000 0.00 0.00 0.00 4.58
2150 3654 1.067295 AGGAGCTTGGTGTGGATGAA 58.933 50.000 0.00 0.00 0.00 2.57
2363 3867 5.590663 GGATTGGTTAGACAAGATTCCCTTC 59.409 44.000 0.00 0.00 33.23 3.46
2375 3879 2.670934 CCCTTCTGTGCTTGCGCT 60.671 61.111 9.73 0.00 36.97 5.92
2411 3915 1.771255 GGATGCCTCTATGTTCTGGGT 59.229 52.381 0.00 0.00 0.00 4.51
2419 3923 4.030913 CTCTATGTTCTGGGTGGGTTCTA 58.969 47.826 0.00 0.00 0.00 2.10
2485 3989 5.626142 TGTAAATCTGTGGCAGGAAGTAAA 58.374 37.500 0.00 0.00 31.51 2.01
2687 4191 2.046023 CCGACTGCATTCCTGGCA 60.046 61.111 0.00 0.00 39.32 4.92
2963 4467 6.292919 GCAAGATAAAGATGTACGATCCCAAC 60.293 42.308 0.00 0.00 0.00 3.77
3045 4549 3.799755 CGTACTTGCTTGCGGGGC 61.800 66.667 0.00 0.00 0.00 5.80
3074 4578 3.129988 GGAAGCTCCATTTGGTCATCAAG 59.870 47.826 0.00 0.00 36.28 3.02
3175 4685 2.235650 CAGATGTCTCTTGGGAGCAAGA 59.764 50.000 0.00 0.00 39.31 3.02
3177 4687 0.318441 TGTCTCTTGGGAGCAAGACG 59.682 55.000 0.00 0.00 40.79 4.18
3178 4688 0.318762 GTCTCTTGGGAGCAAGACGT 59.681 55.000 0.00 0.00 39.31 4.34
3179 4689 0.603569 TCTCTTGGGAGCAAGACGTC 59.396 55.000 7.70 7.70 39.31 4.34
3183 4693 1.134367 CTTGGGAGCAAGACGTCGATA 59.866 52.381 10.46 0.00 34.26 2.92
3197 4707 4.766375 ACGTCGATATTTGGAGAATGGTT 58.234 39.130 0.00 0.00 0.00 3.67
3314 4824 2.095853 CGTACCCTGTGAATCATTGTGC 59.904 50.000 0.00 0.00 0.00 4.57
3529 5043 4.074970 GAGGGAGAAAGTCATTGCTTTGA 58.925 43.478 9.72 0.00 38.64 2.69
3567 5089 0.462789 GCCTGCTGCTATTTTGGCAT 59.537 50.000 0.00 0.00 40.04 4.40
3568 5090 1.682854 GCCTGCTGCTATTTTGGCATA 59.317 47.619 0.00 0.00 40.04 3.14
3573 5097 5.818857 CCTGCTGCTATTTTGGCATATTTTT 59.181 36.000 0.00 0.00 39.07 1.94
3600 5124 6.627087 TCTGGTCTCTTGATGGAAAGTAAT 57.373 37.500 0.00 0.00 0.00 1.89
3607 5131 7.821846 GTCTCTTGATGGAAAGTAATCTGTTCT 59.178 37.037 0.00 0.00 0.00 3.01
3608 5132 7.821359 TCTCTTGATGGAAAGTAATCTGTTCTG 59.179 37.037 0.00 0.00 0.00 3.02
3627 5151 8.812513 TGTTCTGGTTCTGAAATCATCATTAT 57.187 30.769 0.00 0.00 37.44 1.28
3631 5155 7.228108 TCTGGTTCTGAAATCATCATTATGAGC 59.772 37.037 0.29 0.00 45.17 4.26
3668 5192 3.130340 TCTGTTTTCTGAACTTGTTGGGC 59.870 43.478 0.00 0.00 0.00 5.36
3811 5915 8.594550 ACTCCGTATATAACTTGGCATAAGATT 58.405 33.333 6.92 1.61 0.00 2.40
3814 5918 9.214957 CCGTATATAACTTGGCATAAGATTGAA 57.785 33.333 6.92 0.00 0.00 2.69
3823 5927 9.158233 ACTTGGCATAAGATTGAAAAATCATTG 57.842 29.630 6.92 0.00 0.00 2.82
3824 5928 7.542534 TGGCATAAGATTGAAAAATCATTGC 57.457 32.000 1.64 6.51 33.61 3.56
3825 5929 7.332557 TGGCATAAGATTGAAAAATCATTGCT 58.667 30.769 14.35 0.00 34.22 3.91
3826 5930 7.825270 TGGCATAAGATTGAAAAATCATTGCTT 59.175 29.630 14.35 0.00 34.22 3.91
3828 5932 9.485591 GCATAAGATTGAAAAATCATTGCTTTG 57.514 29.630 1.64 0.00 32.64 2.77
3829 5933 9.982291 CATAAGATTGAAAAATCATTGCTTTGG 57.018 29.630 1.64 0.00 0.00 3.28
3832 5936 8.091385 AGATTGAAAAATCATTGCTTTGGTTC 57.909 30.769 1.64 0.00 0.00 3.62
3946 6066 1.377612 GGTTGGGTGGTGGTAGGAC 59.622 63.158 0.00 0.00 0.00 3.85
3982 6106 5.163364 CCATACTATGCTTCCAGTTCTCTGT 60.163 44.000 0.00 0.00 39.82 3.41
3988 6112 2.678324 CTTCCAGTTCTCTGTTCGACC 58.322 52.381 0.00 0.00 39.82 4.79
3989 6113 1.699730 TCCAGTTCTCTGTTCGACCA 58.300 50.000 0.00 0.00 39.82 4.02
3997 6121 3.653344 TCTCTGTTCGACCAGATTTGTG 58.347 45.455 13.48 1.56 40.53 3.33
4007 6131 5.647658 TCGACCAGATTTGTGCAAGATTTAT 59.352 36.000 0.00 0.00 0.00 1.40
4032 6164 3.004734 GTGCTGATTGGCAGTTAGTGTTT 59.995 43.478 3.81 0.00 46.62 2.83
4046 6181 6.418819 CAGTTAGTGTTTGCAGATTTCTTTGG 59.581 38.462 0.00 0.00 0.00 3.28
4048 6183 4.936891 AGTGTTTGCAGATTTCTTTGGTC 58.063 39.130 0.00 0.00 0.00 4.02
4051 6186 4.202141 TGTTTGCAGATTTCTTTGGTCCAG 60.202 41.667 0.00 0.00 0.00 3.86
4053 6188 1.888512 GCAGATTTCTTTGGTCCAGCA 59.111 47.619 0.00 0.00 0.00 4.41
4084 6269 6.127225 CCTTCATGTTCTATCTTCCACTGAGA 60.127 42.308 0.00 0.00 0.00 3.27
4088 6273 9.152327 TCATGTTCTATCTTCCACTGAGATAAT 57.848 33.333 0.00 0.00 36.10 1.28
4122 6312 8.239038 TGGTCATGTTTAGGAATGTTTGTAAA 57.761 30.769 0.00 0.00 0.00 2.01
4150 6340 4.264253 TGATTGCTGCTTAACTGCTATGT 58.736 39.130 0.00 0.00 43.25 2.29
4153 6343 3.411446 TGCTGCTTAACTGCTATGTGTT 58.589 40.909 0.00 0.00 43.25 3.32
4168 6361 6.318648 TGCTATGTGTTTGTTTTCTCTGAACT 59.681 34.615 0.00 0.00 0.00 3.01
4169 6362 7.148086 TGCTATGTGTTTGTTTTCTCTGAACTT 60.148 33.333 0.00 0.00 0.00 2.66
4176 6369 6.668541 TTGTTTTCTCTGAACTTGAGACAG 57.331 37.500 0.00 0.00 39.90 3.51
4199 6392 1.032794 TGAGTTGACGCTGACTGAGT 58.967 50.000 0.00 0.00 0.00 3.41
4216 6411 5.334724 CTGAGTTACAGTACCCGGTAAAT 57.665 43.478 0.00 3.91 41.30 1.40
4222 6417 8.722480 AGTTACAGTACCCGGTAAATAATTTC 57.278 34.615 0.00 0.00 33.88 2.17
4226 6421 7.046033 ACAGTACCCGGTAAATAATTTCTGAG 58.954 38.462 12.26 0.00 0.00 3.35
4233 6428 6.751888 CCGGTAAATAATTTCTGAGGCAAAAG 59.248 38.462 0.00 0.00 0.00 2.27
4235 6430 8.026607 CGGTAAATAATTTCTGAGGCAAAAGAA 58.973 33.333 0.00 0.00 0.00 2.52
4236 6431 9.875691 GGTAAATAATTTCTGAGGCAAAAGAAT 57.124 29.630 0.00 0.00 32.65 2.40
4255 6463 8.755696 AAAGAATGCGCTTTTGTCAATAATAA 57.244 26.923 9.73 0.00 34.60 1.40
4261 6469 5.735427 GCGCTTTTGTCAATAATAACGCTTA 59.265 36.000 0.00 0.00 39.52 3.09
4285 6493 3.651803 TTATTTGGGAACGTTTGCAGG 57.348 42.857 0.46 0.00 0.00 4.85
4289 6497 0.106918 TGGGAACGTTTGCAGGTCTT 60.107 50.000 0.46 0.00 0.00 3.01
4303 6511 1.143684 AGGTCTTGAGGCATGTGTGTT 59.856 47.619 0.00 0.00 0.00 3.32
4304 6512 1.956477 GGTCTTGAGGCATGTGTGTTT 59.044 47.619 0.00 0.00 0.00 2.83
4315 6523 3.243839 GCATGTGTGTTTGGTTGGAAGAT 60.244 43.478 0.00 0.00 0.00 2.40
4333 6541 6.655003 TGGAAGATACACTGAAGAAATTGGAC 59.345 38.462 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.186021 GGTCTGAGTAGAGGACTGAAATCAA 59.814 44.000 0.00 0.00 39.06 2.57
2 3 4.707448 GGTCTGAGTAGAGGACTGAAATCA 59.293 45.833 0.00 0.00 39.06 2.57
3 4 4.707448 TGGTCTGAGTAGAGGACTGAAATC 59.293 45.833 0.00 0.00 39.06 2.17
4 5 4.464597 GTGGTCTGAGTAGAGGACTGAAAT 59.535 45.833 0.00 0.00 39.06 2.17
8 9 3.080300 AGTGGTCTGAGTAGAGGACTG 57.920 52.381 0.00 0.00 39.06 3.51
9 10 4.043059 TGTTAGTGGTCTGAGTAGAGGACT 59.957 45.833 0.00 0.00 42.90 3.85
10 11 4.156373 GTGTTAGTGGTCTGAGTAGAGGAC 59.844 50.000 0.00 0.00 32.48 3.85
11 12 4.333690 GTGTTAGTGGTCTGAGTAGAGGA 58.666 47.826 0.00 0.00 32.48 3.71
12 13 3.444388 GGTGTTAGTGGTCTGAGTAGAGG 59.556 52.174 0.00 0.00 32.48 3.69
14 15 4.079970 CTGGTGTTAGTGGTCTGAGTAGA 58.920 47.826 0.00 0.00 0.00 2.59
15 16 3.827302 ACTGGTGTTAGTGGTCTGAGTAG 59.173 47.826 0.00 0.00 0.00 2.57
17 18 2.628657 GACTGGTGTTAGTGGTCTGAGT 59.371 50.000 0.00 0.00 0.00 3.41
19 20 2.958818 AGACTGGTGTTAGTGGTCTGA 58.041 47.619 0.00 0.00 36.15 3.27
20 21 3.555168 GGAAGACTGGTGTTAGTGGTCTG 60.555 52.174 0.00 0.00 37.34 3.51
21 22 2.633481 GGAAGACTGGTGTTAGTGGTCT 59.367 50.000 0.00 0.00 38.66 3.85
22 23 2.633481 AGGAAGACTGGTGTTAGTGGTC 59.367 50.000 0.00 0.00 0.00 4.02
23 24 2.633481 GAGGAAGACTGGTGTTAGTGGT 59.367 50.000 0.00 0.00 0.00 4.16
27 28 3.436243 AGGAGAGGAAGACTGGTGTTAG 58.564 50.000 0.00 0.00 0.00 2.34
28 29 3.544698 AGGAGAGGAAGACTGGTGTTA 57.455 47.619 0.00 0.00 0.00 2.41
30 31 2.370189 CAAAGGAGAGGAAGACTGGTGT 59.630 50.000 0.00 0.00 0.00 4.16
31 32 2.873649 GCAAAGGAGAGGAAGACTGGTG 60.874 54.545 0.00 0.00 0.00 4.17
32 33 1.349357 GCAAAGGAGAGGAAGACTGGT 59.651 52.381 0.00 0.00 0.00 4.00
33 34 1.627834 AGCAAAGGAGAGGAAGACTGG 59.372 52.381 0.00 0.00 0.00 4.00
34 35 2.038295 ACAGCAAAGGAGAGGAAGACTG 59.962 50.000 0.00 0.00 0.00 3.51
35 36 2.301583 GACAGCAAAGGAGAGGAAGACT 59.698 50.000 0.00 0.00 0.00 3.24
37 38 2.329267 TGACAGCAAAGGAGAGGAAGA 58.671 47.619 0.00 0.00 0.00 2.87
38 39 2.847327 TGACAGCAAAGGAGAGGAAG 57.153 50.000 0.00 0.00 0.00 3.46
39 40 2.877300 GCATGACAGCAAAGGAGAGGAA 60.877 50.000 0.00 0.00 0.00 3.36
40 41 1.339438 GCATGACAGCAAAGGAGAGGA 60.339 52.381 0.00 0.00 0.00 3.71
44 404 1.817357 TCTGCATGACAGCAAAGGAG 58.183 50.000 11.02 0.00 46.76 3.69
157 517 3.637273 GGCTTCTGGTGGGACGGT 61.637 66.667 0.00 0.00 0.00 4.83
159 519 4.003788 ACGGCTTCTGGTGGGACG 62.004 66.667 0.00 0.00 0.00 4.79
160 520 2.358737 CACGGCTTCTGGTGGGAC 60.359 66.667 0.00 0.00 0.00 4.46
161 521 1.990160 AAACACGGCTTCTGGTGGGA 61.990 55.000 0.00 0.00 38.46 4.37
163 523 0.535102 AGAAACACGGCTTCTGGTGG 60.535 55.000 0.00 0.00 38.46 4.61
164 524 0.588252 CAGAAACACGGCTTCTGGTG 59.412 55.000 12.91 0.00 44.00 4.17
165 525 1.166531 GCAGAAACACGGCTTCTGGT 61.167 55.000 18.97 0.00 46.55 4.00
166 526 1.576421 GCAGAAACACGGCTTCTGG 59.424 57.895 18.97 6.87 46.55 3.86
191 551 3.191669 ACGACACAAAGACGATGAAACA 58.808 40.909 0.00 0.00 38.73 2.83
200 560 1.072348 CGACAACGACGACACAAAGAC 60.072 52.381 0.00 0.00 42.66 3.01
215 575 5.601662 AGAGAGAGTTCAAAATCACGACAA 58.398 37.500 0.00 0.00 0.00 3.18
216 576 5.201713 AGAGAGAGTTCAAAATCACGACA 57.798 39.130 0.00 0.00 0.00 4.35
233 593 7.831753 TCCACTACAAAATTCAGTCTAGAGAG 58.168 38.462 0.00 0.00 0.00 3.20
325 685 2.481952 GGTAGATAAGCGTCGTACCGAT 59.518 50.000 0.00 0.00 38.42 4.18
332 692 5.392811 CCTTTATAGGGGTAGATAAGCGTCG 60.393 48.000 0.00 0.00 37.94 5.12
344 704 3.712218 GAGTCTTCAGCCTTTATAGGGGT 59.288 47.826 1.09 0.00 42.25 4.95
351 711 2.897969 ACTTCCGAGTCTTCAGCCTTTA 59.102 45.455 0.00 0.00 0.00 1.85
353 713 1.343069 ACTTCCGAGTCTTCAGCCTT 58.657 50.000 0.00 0.00 0.00 4.35
354 714 2.217510 TACTTCCGAGTCTTCAGCCT 57.782 50.000 0.00 0.00 37.33 4.58
355 715 3.528597 AATACTTCCGAGTCTTCAGCC 57.471 47.619 0.00 0.00 37.33 4.85
356 716 4.495422 TCAAATACTTCCGAGTCTTCAGC 58.505 43.478 0.00 0.00 37.33 4.26
357 717 5.105752 CCTCAAATACTTCCGAGTCTTCAG 58.894 45.833 0.00 0.00 37.33 3.02
358 718 4.527038 ACCTCAAATACTTCCGAGTCTTCA 59.473 41.667 0.00 0.00 37.33 3.02
359 719 5.074584 ACCTCAAATACTTCCGAGTCTTC 57.925 43.478 0.00 0.00 37.33 2.87
360 720 5.485209 AACCTCAAATACTTCCGAGTCTT 57.515 39.130 0.00 0.00 37.33 3.01
361 721 6.600882 TTAACCTCAAATACTTCCGAGTCT 57.399 37.500 0.00 0.00 37.33 3.24
362 722 7.172019 TGTTTTAACCTCAAATACTTCCGAGTC 59.828 37.037 0.00 0.00 37.33 3.36
363 723 6.993902 TGTTTTAACCTCAAATACTTCCGAGT 59.006 34.615 0.00 0.00 39.97 4.18
364 724 7.360946 CCTGTTTTAACCTCAAATACTTCCGAG 60.361 40.741 0.00 0.00 0.00 4.63
365 725 6.428771 CCTGTTTTAACCTCAAATACTTCCGA 59.571 38.462 0.00 0.00 0.00 4.55
366 726 6.428771 TCCTGTTTTAACCTCAAATACTTCCG 59.571 38.462 0.00 0.00 0.00 4.30
367 727 7.229907 TGTCCTGTTTTAACCTCAAATACTTCC 59.770 37.037 0.00 0.00 0.00 3.46
368 728 8.161699 TGTCCTGTTTTAACCTCAAATACTTC 57.838 34.615 0.00 0.00 0.00 3.01
382 742 4.016444 GAGCCCATTCATGTCCTGTTTTA 58.984 43.478 0.00 0.00 0.00 1.52
400 760 4.638865 ACCAAATCATTTAACGGTAGAGCC 59.361 41.667 0.00 0.00 0.00 4.70
408 768 9.169468 GTAGATGCATAACCAAATCATTTAACG 57.831 33.333 0.00 0.00 0.00 3.18
412 772 9.537192 CAATGTAGATGCATAACCAAATCATTT 57.463 29.630 0.00 0.00 0.00 2.32
440 800 2.234908 ACAGCTAAAGAAGACGAGGCAT 59.765 45.455 0.00 0.00 0.00 4.40
442 802 2.371910 ACAGCTAAAGAAGACGAGGC 57.628 50.000 0.00 0.00 0.00 4.70
446 806 6.383415 ACTCTTAGAACAGCTAAAGAAGACG 58.617 40.000 0.00 0.00 38.56 4.18
452 812 6.853362 GCAAACAACTCTTAGAACAGCTAAAG 59.147 38.462 0.00 0.00 38.56 1.85
455 815 5.466728 CAGCAAACAACTCTTAGAACAGCTA 59.533 40.000 0.00 0.00 0.00 3.32
481 841 1.453379 CCAGCTGATTCCTGCCTGG 60.453 63.158 17.39 0.00 37.90 4.45
482 842 0.183014 ATCCAGCTGATTCCTGCCTG 59.817 55.000 17.39 0.00 37.90 4.85
484 844 0.182061 TCATCCAGCTGATTCCTGCC 59.818 55.000 17.39 0.00 37.90 4.85
485 845 2.273538 ATCATCCAGCTGATTCCTGC 57.726 50.000 17.39 0.00 31.82 4.85
486 846 4.401519 ACAAAATCATCCAGCTGATTCCTG 59.598 41.667 17.39 10.31 43.37 3.86
487 847 4.607239 ACAAAATCATCCAGCTGATTCCT 58.393 39.130 17.39 0.00 43.37 3.36
488 848 4.996788 ACAAAATCATCCAGCTGATTCC 57.003 40.909 17.39 0.00 43.37 3.01
489 849 5.032863 CGAACAAAATCATCCAGCTGATTC 58.967 41.667 17.39 2.41 43.37 2.52
490 850 4.701651 TCGAACAAAATCATCCAGCTGATT 59.298 37.500 17.39 3.96 45.48 2.57
491 851 4.264253 TCGAACAAAATCATCCAGCTGAT 58.736 39.130 17.39 3.92 37.47 2.90
492 852 3.673902 TCGAACAAAATCATCCAGCTGA 58.326 40.909 17.39 1.21 0.00 4.26
493 853 3.686241 TCTCGAACAAAATCATCCAGCTG 59.314 43.478 6.78 6.78 0.00 4.24
494 854 3.942829 TCTCGAACAAAATCATCCAGCT 58.057 40.909 0.00 0.00 0.00 4.24
495 855 4.685169 TTCTCGAACAAAATCATCCAGC 57.315 40.909 0.00 0.00 0.00 4.85
496 856 5.032863 GCATTCTCGAACAAAATCATCCAG 58.967 41.667 0.00 0.00 0.00 3.86
497 857 4.142403 GGCATTCTCGAACAAAATCATCCA 60.142 41.667 0.00 0.00 0.00 3.41
498 858 4.142403 TGGCATTCTCGAACAAAATCATCC 60.142 41.667 0.00 0.00 0.00 3.51
499 859 4.985413 TGGCATTCTCGAACAAAATCATC 58.015 39.130 0.00 0.00 0.00 2.92
500 860 5.587388 ATGGCATTCTCGAACAAAATCAT 57.413 34.783 0.00 0.00 0.00 2.45
501 861 5.389859 AATGGCATTCTCGAACAAAATCA 57.610 34.783 6.96 0.00 0.00 2.57
502 862 6.710692 AAAATGGCATTCTCGAACAAAATC 57.289 33.333 14.04 0.00 0.00 2.17
503 863 7.492344 GGATAAAATGGCATTCTCGAACAAAAT 59.508 33.333 14.04 0.00 0.00 1.82
504 864 6.811170 GGATAAAATGGCATTCTCGAACAAAA 59.189 34.615 14.04 0.00 0.00 2.44
505 865 6.071672 TGGATAAAATGGCATTCTCGAACAAA 60.072 34.615 14.04 0.00 0.00 2.83
506 866 5.417266 TGGATAAAATGGCATTCTCGAACAA 59.583 36.000 14.04 0.00 0.00 2.83
507 867 4.946772 TGGATAAAATGGCATTCTCGAACA 59.053 37.500 14.04 6.31 0.00 3.18
508 868 5.499139 TGGATAAAATGGCATTCTCGAAC 57.501 39.130 14.04 3.78 0.00 3.95
509 869 6.522625 TTTGGATAAAATGGCATTCTCGAA 57.477 33.333 14.04 11.01 0.00 3.71
510 870 6.522625 TTTTGGATAAAATGGCATTCTCGA 57.477 33.333 14.04 5.71 31.13 4.04
569 929 2.952310 GTTGAAAAACAGCCTCCAGACT 59.048 45.455 0.00 0.00 0.00 3.24
571 931 1.946768 CGTTGAAAAACAGCCTCCAGA 59.053 47.619 0.00 0.00 0.00 3.86
572 932 1.946768 TCGTTGAAAAACAGCCTCCAG 59.053 47.619 0.00 0.00 0.00 3.86
573 933 2.045561 TCGTTGAAAAACAGCCTCCA 57.954 45.000 0.00 0.00 0.00 3.86
575 935 3.253432 AGGAATCGTTGAAAAACAGCCTC 59.747 43.478 0.00 0.00 0.00 4.70
596 1260 1.476471 GCCCATCAACTCCTGGATCAG 60.476 57.143 0.00 0.00 34.24 2.90
601 1265 1.479323 CATTTGCCCATCAACTCCTGG 59.521 52.381 0.00 0.00 33.73 4.45
608 1272 4.163649 TGCATTATTCCATTTGCCCATCAA 59.836 37.500 0.00 0.00 34.20 2.57
609 1273 3.710165 TGCATTATTCCATTTGCCCATCA 59.290 39.130 0.00 0.00 34.20 3.07
611 1275 3.493002 CGTGCATTATTCCATTTGCCCAT 60.493 43.478 0.00 0.00 34.20 4.00
634 1298 1.093159 CAACCAGCCTCTCAAGATGC 58.907 55.000 0.00 0.00 36.19 3.91
641 1305 3.561725 CGGAAATATTCAACCAGCCTCTC 59.438 47.826 0.00 0.00 0.00 3.20
670 1334 6.542370 TCTTAAGGTGTTCAGACTCCAAAAAG 59.458 38.462 1.85 2.12 40.98 2.27
671 1335 6.419791 TCTTAAGGTGTTCAGACTCCAAAAA 58.580 36.000 1.85 0.00 40.98 1.94
672 1336 5.996644 TCTTAAGGTGTTCAGACTCCAAAA 58.003 37.500 1.85 0.00 40.98 2.44
673 1337 5.623956 TCTTAAGGTGTTCAGACTCCAAA 57.376 39.130 1.85 0.00 40.98 3.28
674 1338 5.551233 CATCTTAAGGTGTTCAGACTCCAA 58.449 41.667 7.63 0.00 40.98 3.53
676 1340 3.935828 GCATCTTAAGGTGTTCAGACTCC 59.064 47.826 16.94 0.00 39.25 3.85
688 1357 9.962809 ATACTAGTAGTAGTAGGCATCTTAAGG 57.037 37.037 19.63 0.00 43.55 2.69
692 1361 9.863650 TGAAATACTAGTAGTAGTAGGCATCTT 57.136 33.333 19.63 7.98 43.55 2.40
693 1362 9.287373 GTGAAATACTAGTAGTAGTAGGCATCT 57.713 37.037 19.63 2.83 43.55 2.90
694 1363 9.064706 TGTGAAATACTAGTAGTAGTAGGCATC 57.935 37.037 19.63 14.87 43.55 3.91
695 1364 8.991783 TGTGAAATACTAGTAGTAGTAGGCAT 57.008 34.615 19.63 4.65 43.55 4.40
696 1365 8.991783 ATGTGAAATACTAGTAGTAGTAGGCA 57.008 34.615 19.63 14.63 43.55 4.75
697 1366 9.680315 CAATGTGAAATACTAGTAGTAGTAGGC 57.320 37.037 19.63 12.77 43.55 3.93
711 1389 7.786178 TGCCTACTATGTCAATGTGAAATAC 57.214 36.000 0.00 0.00 0.00 1.89
713 1391 7.201848 CCATTGCCTACTATGTCAATGTGAAAT 60.202 37.037 11.34 0.00 42.33 2.17
734 1412 0.664166 GTTCGGTGCAACAGCCATTG 60.664 55.000 0.98 0.00 39.98 2.82
736 1414 1.106351 TTGTTCGGTGCAACAGCCAT 61.106 50.000 0.98 0.00 39.98 4.40
738 1416 1.008538 CTTGTTCGGTGCAACAGCC 60.009 57.895 0.98 0.00 39.98 4.85
739 1417 0.941542 TACTTGTTCGGTGCAACAGC 59.058 50.000 0.98 0.00 39.98 4.40
740 1418 2.221055 GTCTACTTGTTCGGTGCAACAG 59.779 50.000 0.98 0.00 39.98 3.16
741 1419 2.206750 GTCTACTTGTTCGGTGCAACA 58.793 47.619 0.98 0.00 39.98 3.33
742 1420 2.206750 TGTCTACTTGTTCGGTGCAAC 58.793 47.619 0.00 0.00 0.00 4.17
743 1421 2.605837 TGTCTACTTGTTCGGTGCAA 57.394 45.000 0.00 0.00 0.00 4.08
744 1422 2.605837 TTGTCTACTTGTTCGGTGCA 57.394 45.000 0.00 0.00 0.00 4.57
746 1424 3.302870 CGGTTTTGTCTACTTGTTCGGTG 60.303 47.826 0.00 0.00 0.00 4.94
747 1425 2.867975 CGGTTTTGTCTACTTGTTCGGT 59.132 45.455 0.00 0.00 0.00 4.69
749 1427 2.349155 GGCGGTTTTGTCTACTTGTTCG 60.349 50.000 0.00 0.00 0.00 3.95
751 1429 1.600485 CGGCGGTTTTGTCTACTTGTT 59.400 47.619 0.00 0.00 0.00 2.83
752 1430 1.223187 CGGCGGTTTTGTCTACTTGT 58.777 50.000 0.00 0.00 0.00 3.16
753 1431 0.515564 CCGGCGGTTTTGTCTACTTG 59.484 55.000 19.97 0.00 0.00 3.16
754 1432 1.232621 GCCGGCGGTTTTGTCTACTT 61.233 55.000 28.82 0.00 0.00 2.24
756 1434 0.390209 TAGCCGGCGGTTTTGTCTAC 60.390 55.000 28.82 7.07 0.00 2.59
757 1435 0.108520 CTAGCCGGCGGTTTTGTCTA 60.109 55.000 28.82 17.11 0.00 2.59
759 1437 2.396157 CCTAGCCGGCGGTTTTGTC 61.396 63.158 28.82 9.53 0.00 3.18
761 1439 3.131478 CCCTAGCCGGCGGTTTTG 61.131 66.667 28.82 17.06 0.00 2.44
769 1458 3.631046 GATGCCCTCCCTAGCCGG 61.631 72.222 0.00 0.00 0.00 6.13
777 1466 2.424956 CAAGCAACTAAAGATGCCCTCC 59.575 50.000 8.43 0.00 43.71 4.30
779 1468 2.450476 CCAAGCAACTAAAGATGCCCT 58.550 47.619 8.43 0.00 43.71 5.19
780 1469 1.134995 GCCAAGCAACTAAAGATGCCC 60.135 52.381 8.43 0.00 43.71 5.36
781 1470 1.468054 CGCCAAGCAACTAAAGATGCC 60.468 52.381 8.43 0.00 43.71 4.40
783 1472 2.159517 GGACGCCAAGCAACTAAAGATG 60.160 50.000 0.00 0.00 0.00 2.90
784 1473 2.084546 GGACGCCAAGCAACTAAAGAT 58.915 47.619 0.00 0.00 0.00 2.40
785 1474 1.519408 GGACGCCAAGCAACTAAAGA 58.481 50.000 0.00 0.00 0.00 2.52
786 1475 0.521735 GGGACGCCAAGCAACTAAAG 59.478 55.000 0.00 0.00 0.00 1.85
788 1477 0.179015 TTGGGACGCCAAGCAACTAA 60.179 50.000 0.00 0.00 0.00 2.24
790 1479 1.454847 TTTGGGACGCCAAGCAACT 60.455 52.632 0.00 0.00 0.00 3.16
791 1480 1.299850 GTTTGGGACGCCAAGCAAC 60.300 57.895 4.23 0.00 32.49 4.17
792 1481 1.323271 TTGTTTGGGACGCCAAGCAA 61.323 50.000 16.29 16.29 44.30 3.91
794 1483 0.179097 TTTTGTTTGGGACGCCAAGC 60.179 50.000 0.00 0.00 0.00 4.01
795 1484 2.403259 GATTTTGTTTGGGACGCCAAG 58.597 47.619 0.00 0.00 0.00 3.61
796 1485 1.269309 CGATTTTGTTTGGGACGCCAA 60.269 47.619 0.00 0.00 0.00 4.52
798 1487 1.006825 GCGATTTTGTTTGGGACGCC 61.007 55.000 0.00 0.00 38.94 5.68
799 1488 1.006825 GGCGATTTTGTTTGGGACGC 61.007 55.000 0.00 0.00 43.00 5.19
800 1489 0.388006 GGGCGATTTTGTTTGGGACG 60.388 55.000 0.00 0.00 0.00 4.79
803 1492 0.315568 TTCGGGCGATTTTGTTTGGG 59.684 50.000 0.00 0.00 0.00 4.12
806 1495 1.268625 GGTCTTCGGGCGATTTTGTTT 59.731 47.619 0.00 0.00 0.00 2.83
807 1496 0.879090 GGTCTTCGGGCGATTTTGTT 59.121 50.000 0.00 0.00 0.00 2.83
808 1497 0.250553 TGGTCTTCGGGCGATTTTGT 60.251 50.000 0.00 0.00 0.00 2.83
809 1498 0.168128 GTGGTCTTCGGGCGATTTTG 59.832 55.000 0.00 0.00 0.00 2.44
810 1499 0.036306 AGTGGTCTTCGGGCGATTTT 59.964 50.000 0.00 0.00 0.00 1.82
812 1501 1.079127 CAGTGGTCTTCGGGCGATT 60.079 57.895 0.00 0.00 0.00 3.34
813 1502 1.330655 ATCAGTGGTCTTCGGGCGAT 61.331 55.000 0.00 0.00 0.00 4.58
814 1503 1.541310 AATCAGTGGTCTTCGGGCGA 61.541 55.000 0.00 0.00 0.00 5.54
815 1504 1.079127 AATCAGTGGTCTTCGGGCG 60.079 57.895 0.00 0.00 0.00 6.13
818 1507 2.933495 TACGAATCAGTGGTCTTCGG 57.067 50.000 19.95 8.58 44.44 4.30
819 1508 5.498700 CGAAAATACGAATCAGTGGTCTTCG 60.499 44.000 16.54 16.54 45.35 3.79
820 1509 5.724223 GCGAAAATACGAATCAGTGGTCTTC 60.724 44.000 0.00 0.00 35.09 2.87
821 1510 4.092968 GCGAAAATACGAATCAGTGGTCTT 59.907 41.667 0.00 0.00 35.09 3.01
822 1511 3.617263 GCGAAAATACGAATCAGTGGTCT 59.383 43.478 0.00 0.00 35.09 3.85
823 1512 3.541516 CGCGAAAATACGAATCAGTGGTC 60.542 47.826 0.00 0.00 35.09 4.02
824 1513 2.347452 CGCGAAAATACGAATCAGTGGT 59.653 45.455 0.00 0.00 35.09 4.16
825 1514 2.347452 ACGCGAAAATACGAATCAGTGG 59.653 45.455 15.93 0.00 35.09 4.00
828 1517 2.528688 TCGACGCGAAAATACGAATCAG 59.471 45.455 15.93 0.00 31.06 2.90
829 1518 2.277057 GTCGACGCGAAAATACGAATCA 59.723 45.455 15.93 0.00 37.72 2.57
830 1519 2.529090 AGTCGACGCGAAAATACGAATC 59.471 45.455 15.93 0.00 37.72 2.52
831 1520 2.278094 CAGTCGACGCGAAAATACGAAT 59.722 45.455 15.93 10.09 37.72 3.34
832 1521 1.645265 CAGTCGACGCGAAAATACGAA 59.355 47.619 15.93 0.00 37.72 3.85
833 1522 1.253116 CAGTCGACGCGAAAATACGA 58.747 50.000 15.93 10.84 37.72 3.43
834 1523 0.293723 CCAGTCGACGCGAAAATACG 59.706 55.000 15.93 8.58 37.72 3.06
837 1526 1.374252 AGCCAGTCGACGCGAAAAT 60.374 52.632 15.93 0.00 37.72 1.82
839 1528 2.733218 CAGCCAGTCGACGCGAAA 60.733 61.111 15.93 0.00 37.72 3.46
840 1529 4.717629 CCAGCCAGTCGACGCGAA 62.718 66.667 15.93 0.00 37.72 4.70
842 1531 3.620300 TTACCAGCCAGTCGACGCG 62.620 63.158 10.46 3.53 0.00 6.01
843 1532 0.947180 TTTTACCAGCCAGTCGACGC 60.947 55.000 10.46 8.70 0.00 5.19
844 1533 1.722011 ATTTTACCAGCCAGTCGACG 58.278 50.000 10.46 5.16 0.00 5.12
845 1534 2.093783 CGAATTTTACCAGCCAGTCGAC 59.906 50.000 7.70 7.70 0.00 4.20
846 1535 2.289195 ACGAATTTTACCAGCCAGTCGA 60.289 45.455 0.00 0.00 0.00 4.20
847 1536 2.073816 ACGAATTTTACCAGCCAGTCG 58.926 47.619 0.00 0.00 0.00 4.18
848 1537 3.621715 CCTACGAATTTTACCAGCCAGTC 59.378 47.826 0.00 0.00 0.00 3.51
849 1538 3.008704 ACCTACGAATTTTACCAGCCAGT 59.991 43.478 0.00 0.00 0.00 4.00
850 1539 3.374058 CACCTACGAATTTTACCAGCCAG 59.626 47.826 0.00 0.00 0.00 4.85
851 1540 3.244630 ACACCTACGAATTTTACCAGCCA 60.245 43.478 0.00 0.00 0.00 4.75
852 1541 3.126343 CACACCTACGAATTTTACCAGCC 59.874 47.826 0.00 0.00 0.00 4.85
853 1542 3.425758 GCACACCTACGAATTTTACCAGC 60.426 47.826 0.00 0.00 0.00 4.85
854 1543 4.000988 AGCACACCTACGAATTTTACCAG 58.999 43.478 0.00 0.00 0.00 4.00
856 1545 4.251268 AGAGCACACCTACGAATTTTACC 58.749 43.478 0.00 0.00 0.00 2.85
857 1546 6.328507 GTAGAGCACACCTACGAATTTTAC 57.671 41.667 0.00 0.00 0.00 2.01
874 1563 1.425412 TTTTCCTTGACGCGTAGAGC 58.575 50.000 13.97 0.00 43.95 4.09
875 1564 2.412089 CCTTTTTCCTTGACGCGTAGAG 59.588 50.000 13.97 13.29 0.00 2.43
876 1565 2.036217 TCCTTTTTCCTTGACGCGTAGA 59.964 45.455 13.97 3.89 0.00 2.59
878 1567 2.529780 TCCTTTTTCCTTGACGCGTA 57.470 45.000 13.97 0.00 0.00 4.42
880 1569 4.616181 ATTATCCTTTTTCCTTGACGCG 57.384 40.909 3.53 3.53 0.00 6.01
909 1868 9.868160 TTTCTCCCTTTCTCTTTCTTTCTTTAT 57.132 29.630 0.00 0.00 0.00 1.40
910 1869 9.695155 TTTTCTCCCTTTCTCTTTCTTTCTTTA 57.305 29.630 0.00 0.00 0.00 1.85
969 1928 6.112927 ACCAAGTAACCGTCCACTTATTTA 57.887 37.500 0.00 0.00 33.29 1.40
978 1937 0.393820 TGGTGACCAAGTAACCGTCC 59.606 55.000 0.00 0.00 39.89 4.79
981 1940 1.067425 TCGATGGTGACCAAGTAACCG 60.067 52.381 9.06 6.02 39.89 4.44
990 1949 3.197614 TCGAGCTCGATGGTGACC 58.802 61.111 33.84 0.00 44.22 4.02
1009 1973 3.426568 GGAGTTGCGTGGCTCTGC 61.427 66.667 0.00 0.00 32.67 4.26
1096 2093 2.291457 GAAGAGAGGAGGAGGCGTGC 62.291 65.000 0.00 0.00 0.00 5.34
1097 2094 0.682855 AGAAGAGAGGAGGAGGCGTG 60.683 60.000 0.00 0.00 0.00 5.34
1098 2095 0.395173 GAGAAGAGAGGAGGAGGCGT 60.395 60.000 0.00 0.00 0.00 5.68
1108 2105 4.214327 GGCCGCGGGAGAAGAGAG 62.214 72.222 29.38 0.00 0.00 3.20
1209 2206 2.821366 TCGACGAGGCGGTACTCC 60.821 66.667 0.00 0.00 33.93 3.85
1210 2207 2.402787 GTCGACGAGGCGGTACTC 59.597 66.667 0.00 0.00 0.00 2.59
1211 2208 3.130160 GGTCGACGAGGCGGTACT 61.130 66.667 9.92 0.00 0.00 2.73
1212 2209 3.105852 GAGGTCGACGAGGCGGTAC 62.106 68.421 9.92 0.00 0.00 3.34
1213 2210 2.821366 GAGGTCGACGAGGCGGTA 60.821 66.667 9.92 0.00 0.00 4.02
1232 2229 3.551496 TTGAGGTCTTGCGGCCTGG 62.551 63.158 0.00 0.00 34.81 4.45
1233 2230 2.032528 TTGAGGTCTTGCGGCCTG 59.967 61.111 0.00 0.00 34.81 4.85
1234 2231 2.348998 CTTGAGGTCTTGCGGCCT 59.651 61.111 0.00 0.00 37.91 5.19
1235 2232 2.747855 CCTTGAGGTCTTGCGGCC 60.748 66.667 0.00 0.00 0.00 6.13
1236 2233 3.435186 GCCTTGAGGTCTTGCGGC 61.435 66.667 0.00 0.00 37.57 6.53
1237 2234 2.747855 GGCCTTGAGGTCTTGCGG 60.748 66.667 0.00 0.00 36.72 5.69
1238 2235 2.747855 GGGCCTTGAGGTCTTGCG 60.748 66.667 0.84 0.00 40.38 4.85
1239 2236 1.973812 GTGGGCCTTGAGGTCTTGC 60.974 63.158 4.53 0.00 40.38 4.01
1240 2237 1.672356 CGTGGGCCTTGAGGTCTTG 60.672 63.158 4.53 0.00 40.38 3.02
1241 2238 2.750350 CGTGGGCCTTGAGGTCTT 59.250 61.111 4.53 0.00 40.38 3.01
1311 2308 4.803426 GTCTACTGCTGCCGCGCT 62.803 66.667 5.56 0.00 39.65 5.92
1316 2313 1.449246 CTGGCTGTCTACTGCTGCC 60.449 63.158 11.11 6.31 46.73 4.85
1326 2323 2.460757 TACGGTTTTACCTGGCTGTC 57.539 50.000 0.00 0.00 35.66 3.51
1351 2348 0.182775 AAATACACTGATCCCGCCCC 59.817 55.000 0.00 0.00 0.00 5.80
1352 2349 1.947456 GAAAATACACTGATCCCGCCC 59.053 52.381 0.00 0.00 0.00 6.13
1353 2350 2.639065 TGAAAATACACTGATCCCGCC 58.361 47.619 0.00 0.00 0.00 6.13
1354 2351 4.335315 TGAATGAAAATACACTGATCCCGC 59.665 41.667 0.00 0.00 0.00 6.13
1355 2352 5.586243 ACTGAATGAAAATACACTGATCCCG 59.414 40.000 0.00 0.00 0.00 5.14
1356 2353 6.825721 AGACTGAATGAAAATACACTGATCCC 59.174 38.462 0.00 0.00 0.00 3.85
1357 2354 7.856145 AGACTGAATGAAAATACACTGATCC 57.144 36.000 0.00 0.00 0.00 3.36
1358 2355 9.766277 GAAAGACTGAATGAAAATACACTGATC 57.234 33.333 0.00 0.00 0.00 2.92
1359 2356 9.512588 AGAAAGACTGAATGAAAATACACTGAT 57.487 29.630 0.00 0.00 0.00 2.90
1377 2775 0.035317 TGCCATGCGACAGAAAGACT 59.965 50.000 0.00 0.00 0.00 3.24
1380 2778 1.089112 TCATGCCATGCGACAGAAAG 58.911 50.000 0.00 0.00 0.00 2.62
1393 2791 0.532115 AACGGCCTCAAATTCATGCC 59.468 50.000 0.00 0.00 38.74 4.40
1405 2803 0.748729 TCGAACAACCAAAACGGCCT 60.749 50.000 0.00 0.00 39.03 5.19
1407 2805 1.784283 CATTCGAACAACCAAAACGGC 59.216 47.619 0.00 0.00 39.03 5.68
1410 2808 7.360361 AGATTAGTCATTCGAACAACCAAAAC 58.640 34.615 0.00 0.00 0.00 2.43
1449 2847 7.852454 GGCAAATTTCTTGCTCTTAACAAAAAG 59.148 33.333 9.15 0.00 44.36 2.27
1450 2848 7.465245 CGGCAAATTTCTTGCTCTTAACAAAAA 60.465 33.333 9.15 0.00 44.36 1.94
1451 2849 6.019156 CGGCAAATTTCTTGCTCTTAACAAAA 60.019 34.615 9.15 0.00 44.36 2.44
1456 2854 4.545610 CACGGCAAATTTCTTGCTCTTAA 58.454 39.130 9.15 0.00 44.36 1.85
1463 2861 0.033228 TGGCCACGGCAAATTTCTTG 59.967 50.000 0.00 0.00 44.11 3.02
1472 2870 3.053291 GACGAATTGGCCACGGCA 61.053 61.111 14.79 0.00 44.11 5.69
1473 2871 4.160635 CGACGAATTGGCCACGGC 62.161 66.667 17.42 13.96 41.06 5.68
1485 2883 6.873656 CAAGAAAATCTTGTCTTAACGACGA 58.126 36.000 0.00 0.00 46.50 4.20
1517 2915 7.500559 AGAGTTGATTAAGGATACAGCCAAATC 59.499 37.037 0.00 0.00 41.41 2.17
1523 2921 5.008118 GCCAAGAGTTGATTAAGGATACAGC 59.992 44.000 0.00 0.00 41.41 4.40
1524 2922 6.352516 AGCCAAGAGTTGATTAAGGATACAG 58.647 40.000 0.00 0.00 41.41 2.74
1528 2926 5.131809 AGCTAGCCAAGAGTTGATTAAGGAT 59.868 40.000 12.13 0.00 0.00 3.24
1535 2933 1.741732 CGCAGCTAGCCAAGAGTTGAT 60.742 52.381 12.13 0.00 41.38 2.57
1538 2936 0.321671 TTCGCAGCTAGCCAAGAGTT 59.678 50.000 12.13 0.00 41.38 3.01
1539 2937 0.539051 ATTCGCAGCTAGCCAAGAGT 59.461 50.000 12.13 2.09 41.38 3.24
1540 2938 0.935898 CATTCGCAGCTAGCCAAGAG 59.064 55.000 12.13 3.91 41.38 2.85
1541 2939 0.250234 ACATTCGCAGCTAGCCAAGA 59.750 50.000 12.13 5.26 41.38 3.02
1542 2940 0.376152 CACATTCGCAGCTAGCCAAG 59.624 55.000 12.13 2.82 41.38 3.61
1543 2941 0.036483 TCACATTCGCAGCTAGCCAA 60.036 50.000 12.13 0.00 41.38 4.52
1544 2942 0.178767 ATCACATTCGCAGCTAGCCA 59.821 50.000 12.13 0.00 41.38 4.75
1545 2943 2.064762 CTATCACATTCGCAGCTAGCC 58.935 52.381 12.13 0.00 41.38 3.93
1554 2952 5.687730 AGCGACTATTGTTCTATCACATTCG 59.312 40.000 0.00 0.00 0.00 3.34
1576 2974 2.359531 AGTGATAGTCGGTAAGCAGAGC 59.640 50.000 0.00 0.00 0.00 4.09
1588 2986 4.884744 TCTTGAGAGTGGCTAGTGATAGTC 59.115 45.833 0.00 0.00 0.00 2.59
1589 2987 4.861196 TCTTGAGAGTGGCTAGTGATAGT 58.139 43.478 0.00 0.00 0.00 2.12
1592 2990 3.640967 GGATCTTGAGAGTGGCTAGTGAT 59.359 47.826 0.00 0.00 0.00 3.06
1596 2994 3.295093 TGAGGATCTTGAGAGTGGCTAG 58.705 50.000 0.00 0.00 34.92 3.42
1597 2995 3.388552 TGAGGATCTTGAGAGTGGCTA 57.611 47.619 0.00 0.00 34.92 3.93
1598 2996 2.244486 TGAGGATCTTGAGAGTGGCT 57.756 50.000 0.00 0.00 34.92 4.75
1600 2998 2.770802 ACCATGAGGATCTTGAGAGTGG 59.229 50.000 0.00 0.00 42.34 4.00
1602 3000 3.960102 GAGACCATGAGGATCTTGAGAGT 59.040 47.826 0.00 0.00 42.34 3.24
1603 3001 4.217510 AGAGACCATGAGGATCTTGAGAG 58.782 47.826 0.00 0.00 42.34 3.20
1606 3012 3.703556 GTGAGAGACCATGAGGATCTTGA 59.296 47.826 0.00 0.00 42.34 3.02
1622 3028 4.763073 TCAACCATCTTAGCATGTGAGAG 58.237 43.478 0.00 0.00 0.00 3.20
1635 3041 6.013379 TGACTAGATCCAAGTTTCAACCATCT 60.013 38.462 0.00 0.00 0.00 2.90
1636 3042 6.173339 TGACTAGATCCAAGTTTCAACCATC 58.827 40.000 0.00 0.00 0.00 3.51
1637 3043 6.126863 TGACTAGATCCAAGTTTCAACCAT 57.873 37.500 0.00 0.00 0.00 3.55
1638 3044 5.560722 TGACTAGATCCAAGTTTCAACCA 57.439 39.130 0.00 0.00 0.00 3.67
1639 3045 6.487689 CTTGACTAGATCCAAGTTTCAACC 57.512 41.667 0.00 0.00 36.08 3.77
1647 3053 5.821470 TCCGTACTACTTGACTAGATCCAAG 59.179 44.000 16.68 16.68 43.84 3.61
1648 3054 5.587844 GTCCGTACTACTTGACTAGATCCAA 59.412 44.000 0.00 0.00 0.00 3.53
1649 3055 5.121811 GTCCGTACTACTTGACTAGATCCA 58.878 45.833 0.00 0.00 0.00 3.41
1650 3056 5.007528 GTGTCCGTACTACTTGACTAGATCC 59.992 48.000 0.00 0.00 0.00 3.36
1651 3057 5.583854 TGTGTCCGTACTACTTGACTAGATC 59.416 44.000 0.00 0.00 0.00 2.75
1652 3058 5.494724 TGTGTCCGTACTACTTGACTAGAT 58.505 41.667 0.00 0.00 0.00 1.98
1653 3059 4.898320 TGTGTCCGTACTACTTGACTAGA 58.102 43.478 0.00 0.00 0.00 2.43
1654 3060 5.814764 ATGTGTCCGTACTACTTGACTAG 57.185 43.478 0.00 0.00 0.00 2.57
1655 3061 6.881065 ACTAATGTGTCCGTACTACTTGACTA 59.119 38.462 0.00 0.05 0.00 2.59
1656 3062 5.709164 ACTAATGTGTCCGTACTACTTGACT 59.291 40.000 0.00 0.00 0.00 3.41
1657 3063 5.947443 ACTAATGTGTCCGTACTACTTGAC 58.053 41.667 0.00 0.00 0.00 3.18
1658 3064 6.579666 AACTAATGTGTCCGTACTACTTGA 57.420 37.500 0.00 0.00 0.00 3.02
1659 3065 6.471519 GCTAACTAATGTGTCCGTACTACTTG 59.528 42.308 0.00 0.00 0.00 3.16
1660 3066 6.376581 AGCTAACTAATGTGTCCGTACTACTT 59.623 38.462 0.00 0.00 0.00 2.24
1661 3067 5.884792 AGCTAACTAATGTGTCCGTACTACT 59.115 40.000 0.00 0.00 0.00 2.57
1662 3068 6.129053 AGCTAACTAATGTGTCCGTACTAC 57.871 41.667 0.00 0.00 0.00 2.73
1663 3069 5.882000 TGAGCTAACTAATGTGTCCGTACTA 59.118 40.000 0.00 0.00 0.00 1.82
1664 3070 4.703575 TGAGCTAACTAATGTGTCCGTACT 59.296 41.667 0.00 0.00 0.00 2.73
1665 3071 4.990257 TGAGCTAACTAATGTGTCCGTAC 58.010 43.478 0.00 0.00 0.00 3.67
1666 3072 4.703575 ACTGAGCTAACTAATGTGTCCGTA 59.296 41.667 0.00 0.00 0.00 4.02
1667 3073 3.510360 ACTGAGCTAACTAATGTGTCCGT 59.490 43.478 0.00 0.00 0.00 4.69
1668 3074 4.106197 GACTGAGCTAACTAATGTGTCCG 58.894 47.826 0.00 0.00 0.00 4.79
1669 3075 5.105752 CAGACTGAGCTAACTAATGTGTCC 58.894 45.833 0.00 0.00 0.00 4.02
1670 3076 4.564769 GCAGACTGAGCTAACTAATGTGTC 59.435 45.833 6.65 0.00 0.00 3.67
1671 3077 4.021104 TGCAGACTGAGCTAACTAATGTGT 60.021 41.667 6.65 0.00 0.00 3.72
1672 3078 4.328440 GTGCAGACTGAGCTAACTAATGTG 59.672 45.833 6.65 0.00 0.00 3.21
1673 3079 4.221703 AGTGCAGACTGAGCTAACTAATGT 59.778 41.667 6.65 0.00 0.00 2.71
1674 3080 4.753233 AGTGCAGACTGAGCTAACTAATG 58.247 43.478 6.65 0.00 0.00 1.90
1690 3096 6.292757 GCATCTCATATAAAGTCACAGTGCAG 60.293 42.308 0.00 0.00 0.00 4.41
1692 3098 5.049818 GGCATCTCATATAAAGTCACAGTGC 60.050 44.000 0.00 0.00 0.00 4.40
1693 3099 6.051074 TGGCATCTCATATAAAGTCACAGTG 58.949 40.000 0.00 0.00 0.00 3.66
1694 3100 6.239217 TGGCATCTCATATAAAGTCACAGT 57.761 37.500 0.00 0.00 0.00 3.55
1711 3117 3.464494 GCAAAGGGGGCTGGCATC 61.464 66.667 2.88 0.00 0.00 3.91
1712 3118 3.850100 TTGCAAAGGGGGCTGGCAT 62.850 57.895 0.00 0.00 34.03 4.40
1758 3164 2.233186 TCTGCACTCCATCTCTGAACTG 59.767 50.000 0.00 0.00 0.00 3.16
1760 3166 3.540314 ATCTGCACTCCATCTCTGAAC 57.460 47.619 0.00 0.00 0.00 3.18
1786 3192 1.123928 ATAGGCACTCCACAGCTACC 58.876 55.000 0.00 0.00 41.75 3.18
1788 3194 3.384789 CACTTATAGGCACTCCACAGCTA 59.615 47.826 0.00 0.00 41.75 3.32
1789 3195 2.169352 CACTTATAGGCACTCCACAGCT 59.831 50.000 0.00 0.00 41.75 4.24
1790 3196 2.168521 TCACTTATAGGCACTCCACAGC 59.831 50.000 0.00 0.00 41.75 4.40
1791 3197 4.184629 GTTCACTTATAGGCACTCCACAG 58.815 47.826 0.00 0.00 41.75 3.66
1792 3198 3.368013 CGTTCACTTATAGGCACTCCACA 60.368 47.826 0.00 0.00 41.75 4.17
1793 3199 3.187700 CGTTCACTTATAGGCACTCCAC 58.812 50.000 0.00 0.00 41.75 4.02
1794 3200 2.418197 GCGTTCACTTATAGGCACTCCA 60.418 50.000 0.00 0.00 41.75 3.86
1795 3201 2.202566 GCGTTCACTTATAGGCACTCC 58.797 52.381 0.00 0.00 41.75 3.85
1798 3204 2.018542 TGGCGTTCACTTATAGGCAC 57.981 50.000 0.00 0.00 32.43 5.01
1826 3234 2.771372 AGGCCCAAAAGAAAAAGCTGAA 59.229 40.909 0.00 0.00 0.00 3.02
1828 3236 2.916702 AGGCCCAAAAGAAAAAGCTG 57.083 45.000 0.00 0.00 0.00 4.24
1829 3237 3.931907 AAAGGCCCAAAAGAAAAAGCT 57.068 38.095 0.00 0.00 0.00 3.74
1867 3362 2.289010 CCCATTTGAGCACTTGTTTCCC 60.289 50.000 0.00 0.00 0.00 3.97
1874 3369 0.252375 ATGCCCCCATTTGAGCACTT 60.252 50.000 0.00 0.00 38.21 3.16
1875 3370 0.685458 GATGCCCCCATTTGAGCACT 60.685 55.000 0.00 0.00 38.21 4.40
1876 3371 0.685458 AGATGCCCCCATTTGAGCAC 60.685 55.000 0.00 0.00 38.21 4.40
1877 3372 0.396139 GAGATGCCCCCATTTGAGCA 60.396 55.000 0.00 0.00 40.00 4.26
1878 3373 0.106318 AGAGATGCCCCCATTTGAGC 60.106 55.000 0.00 0.00 0.00 4.26
1879 3374 1.213678 TGAGAGATGCCCCCATTTGAG 59.786 52.381 0.00 0.00 0.00 3.02
1880 3375 1.213678 CTGAGAGATGCCCCCATTTGA 59.786 52.381 0.00 0.00 0.00 2.69
1881 3376 1.688772 CTGAGAGATGCCCCCATTTG 58.311 55.000 0.00 0.00 0.00 2.32
1882 3377 0.106318 GCTGAGAGATGCCCCCATTT 60.106 55.000 0.00 0.00 0.00 2.32
1925 3429 0.465460 ACGCTTCCTTGTGCTCCAAA 60.465 50.000 0.00 0.00 31.20 3.28
1936 3440 0.608640 ACCTGATTTCGACGCTTCCT 59.391 50.000 0.00 0.00 0.00 3.36
1950 3454 1.633774 AGCTTCTTCGAGGAACCTGA 58.366 50.000 5.78 0.00 0.00 3.86
2097 3601 0.700564 AACTCCATGCCAGTGATGGT 59.299 50.000 9.94 0.00 41.19 3.55
2123 3627 0.671781 CACCAAGCTCCTTCCTCACG 60.672 60.000 0.00 0.00 0.00 4.35
2150 3654 7.056635 CCTTGGTCAGTATGTAAATCCATTCT 58.943 38.462 0.00 0.00 37.40 2.40
2195 3699 1.802636 CGGATCAAAAGCGTGCCAT 59.197 52.632 0.00 0.00 0.00 4.40
2375 3879 0.611200 ATCCATCGACCGTTCCAACA 59.389 50.000 0.00 0.00 0.00 3.33
2411 3915 1.762957 GCTGTGGCTCTATAGAACCCA 59.237 52.381 17.70 16.10 35.22 4.51
2419 3923 3.129988 GCTTTTGATTGCTGTGGCTCTAT 59.870 43.478 0.00 0.00 39.59 1.98
2641 4145 1.403323 GTGCTTTAGAGAAGGGCATGC 59.597 52.381 9.90 9.90 35.37 4.06
2687 4191 1.608283 GCAACCGGCTTCAGTAAGTCT 60.608 52.381 0.00 0.00 40.25 3.24
2963 4467 1.414181 ACAGCCTTCCATGTATCCTCG 59.586 52.381 0.00 0.00 0.00 4.63
3045 4549 2.494870 CCAAATGGAGCTTCCCAAGAAG 59.505 50.000 0.00 0.00 44.41 2.85
3175 4685 4.402056 ACCATTCTCCAAATATCGACGT 57.598 40.909 0.00 0.00 0.00 4.34
3177 4687 4.261197 GCCAACCATTCTCCAAATATCGAC 60.261 45.833 0.00 0.00 0.00 4.20
3178 4688 3.882888 GCCAACCATTCTCCAAATATCGA 59.117 43.478 0.00 0.00 0.00 3.59
3179 4689 3.885297 AGCCAACCATTCTCCAAATATCG 59.115 43.478 0.00 0.00 0.00 2.92
3183 4693 3.173953 TGAGCCAACCATTCTCCAAAT 57.826 42.857 0.00 0.00 0.00 2.32
3197 4707 1.605202 GCCGCAAATTTCTTTGAGCCA 60.605 47.619 2.41 0.00 43.71 4.75
3350 4863 3.367703 CCCAACAAGTTCATCATGGCTTC 60.368 47.826 0.00 0.00 0.00 3.86
3497 5011 6.433847 TGACTTTCTCCCTCTAATGTGAAA 57.566 37.500 0.00 0.00 0.00 2.69
3529 5043 2.022195 GCTGCATGATGTTCAGATGGT 58.978 47.619 0.00 0.00 0.00 3.55
3573 5097 4.705110 TTCCATCAAGAGACCAGAACAA 57.295 40.909 0.00 0.00 0.00 2.83
3583 5107 7.065563 CCAGAACAGATTACTTTCCATCAAGAG 59.934 40.741 0.00 0.00 0.00 2.85
3600 5124 5.868454 TGATGATTTCAGAACCAGAACAGA 58.132 37.500 0.00 0.00 0.00 3.41
3607 5131 7.012989 CAGCTCATAATGATGATTTCAGAACCA 59.987 37.037 0.00 0.00 41.33 3.67
3608 5132 7.361127 CAGCTCATAATGATGATTTCAGAACC 58.639 38.462 0.00 0.00 41.33 3.62
3627 5151 4.000988 CAGATACATATGCATGCAGCTCA 58.999 43.478 26.69 11.27 45.94 4.26
3631 5155 6.856426 CAGAAAACAGATACATATGCATGCAG 59.144 38.462 26.69 15.02 35.39 4.41
3668 5192 3.681897 GTCAGATGTGCTGTTAAGGTGAG 59.318 47.826 0.00 0.00 45.14 3.51
3811 5915 7.804843 ATTGAACCAAAGCAATGATTTTTCA 57.195 28.000 6.91 6.91 33.74 2.69
3818 5922 7.341512 TGGTGATATATTGAACCAAAGCAATGA 59.658 33.333 11.46 0.00 39.71 2.57
3819 5923 7.490840 TGGTGATATATTGAACCAAAGCAATG 58.509 34.615 11.46 0.00 39.71 2.82
3820 5924 7.658525 TGGTGATATATTGAACCAAAGCAAT 57.341 32.000 11.46 0.00 39.71 3.56
3821 5925 7.341512 TCATGGTGATATATTGAACCAAAGCAA 59.658 33.333 15.71 0.00 45.40 3.91
3823 5927 7.275888 TCATGGTGATATATTGAACCAAAGC 57.724 36.000 15.71 0.00 45.40 3.51
3824 5928 9.740239 CTTTCATGGTGATATATTGAACCAAAG 57.260 33.333 15.71 12.25 45.40 2.77
3825 5929 9.473007 TCTTTCATGGTGATATATTGAACCAAA 57.527 29.630 15.71 7.58 45.40 3.28
3826 5930 9.645128 ATCTTTCATGGTGATATATTGAACCAA 57.355 29.630 15.71 3.15 45.40 3.67
3898 6018 6.336842 AGTCCAACAAATTCAGGAATTCAG 57.663 37.500 7.93 6.65 39.88 3.02
3982 6106 2.844946 TCTTGCACAAATCTGGTCGAA 58.155 42.857 0.00 0.00 0.00 3.71
3988 6112 7.117236 AGCACAAATAAATCTTGCACAAATCTG 59.883 33.333 0.00 0.00 35.57 2.90
3989 6113 7.117236 CAGCACAAATAAATCTTGCACAAATCT 59.883 33.333 0.00 0.00 35.57 2.40
3997 6121 5.220529 GCCAATCAGCACAAATAAATCTTGC 60.221 40.000 0.00 0.00 0.00 4.01
4007 6131 3.004629 CACTAACTGCCAATCAGCACAAA 59.995 43.478 0.00 0.00 46.76 2.83
4032 6164 1.888512 GCTGGACCAAAGAAATCTGCA 59.111 47.619 0.00 0.00 0.00 4.41
4046 6181 0.543749 ATGAAGGCCTACTGCTGGAC 59.456 55.000 5.16 0.00 40.92 4.02
4048 6183 0.254178 ACATGAAGGCCTACTGCTGG 59.746 55.000 5.16 0.00 40.92 4.85
4051 6186 2.409948 AGAACATGAAGGCCTACTGC 57.590 50.000 5.16 0.00 40.16 4.40
4053 6188 5.071115 GGAAGATAGAACATGAAGGCCTACT 59.929 44.000 5.16 0.00 0.00 2.57
4133 6323 4.161333 CAAACACATAGCAGTTAAGCAGC 58.839 43.478 0.00 0.00 36.85 5.25
4134 6324 5.362556 ACAAACACATAGCAGTTAAGCAG 57.637 39.130 0.00 0.00 36.85 4.24
4140 6330 6.318648 TCAGAGAAAACAAACACATAGCAGTT 59.681 34.615 0.00 0.00 0.00 3.16
4141 6331 5.822519 TCAGAGAAAACAAACACATAGCAGT 59.177 36.000 0.00 0.00 0.00 4.40
4142 6332 6.304356 TCAGAGAAAACAAACACATAGCAG 57.696 37.500 0.00 0.00 0.00 4.24
4150 6340 6.429692 TGTCTCAAGTTCAGAGAAAACAAACA 59.570 34.615 0.00 0.00 43.22 2.83
4153 6343 5.586243 CCTGTCTCAAGTTCAGAGAAAACAA 59.414 40.000 0.00 0.00 43.22 2.83
4168 6361 3.194861 CGTCAACTCAAACCTGTCTCAA 58.805 45.455 0.00 0.00 0.00 3.02
4169 6362 2.821546 CGTCAACTCAAACCTGTCTCA 58.178 47.619 0.00 0.00 0.00 3.27
4176 6369 1.261619 CAGTCAGCGTCAACTCAAACC 59.738 52.381 0.00 0.00 0.00 3.27
4199 6392 8.538701 TCAGAAATTATTTACCGGGTACTGTAA 58.461 33.333 6.34 6.93 0.00 2.41
4216 6411 5.401550 CGCATTCTTTTGCCTCAGAAATTA 58.598 37.500 0.00 0.00 39.52 1.40
4222 6417 0.524862 AGCGCATTCTTTTGCCTCAG 59.475 50.000 11.47 0.00 39.52 3.35
4233 6428 6.618198 CGTTATTATTGACAAAAGCGCATTC 58.382 36.000 11.47 0.00 0.00 2.67
4235 6430 4.499040 GCGTTATTATTGACAAAAGCGCAT 59.501 37.500 11.47 0.00 40.66 4.73
4236 6431 3.849145 GCGTTATTATTGACAAAAGCGCA 59.151 39.130 11.47 0.00 40.66 6.09
4237 6432 4.095610 AGCGTTATTATTGACAAAAGCGC 58.904 39.130 0.00 0.00 41.16 5.92
4239 6434 8.442605 TTGTAAGCGTTATTATTGACAAAAGC 57.557 30.769 0.00 0.00 0.00 3.51
4255 6463 4.456566 ACGTTCCCAAATAATTGTAAGCGT 59.543 37.500 0.00 0.54 34.60 5.07
4261 6469 4.950050 TGCAAACGTTCCCAAATAATTGT 58.050 34.783 0.00 0.00 34.60 2.71
4267 6475 1.339929 GACCTGCAAACGTTCCCAAAT 59.660 47.619 0.00 0.00 0.00 2.32
4273 6481 1.264288 CCTCAAGACCTGCAAACGTTC 59.736 52.381 0.00 0.00 0.00 3.95
4274 6482 1.308998 CCTCAAGACCTGCAAACGTT 58.691 50.000 0.00 0.00 0.00 3.99
4285 6493 2.287788 CCAAACACACATGCCTCAAGAC 60.288 50.000 0.00 0.00 0.00 3.01
4289 6497 1.408340 CAACCAAACACACATGCCTCA 59.592 47.619 0.00 0.00 0.00 3.86
4303 6511 5.560722 TCTTCAGTGTATCTTCCAACCAA 57.439 39.130 0.00 0.00 0.00 3.67
4304 6512 5.560722 TTCTTCAGTGTATCTTCCAACCA 57.439 39.130 0.00 0.00 0.00 3.67
4315 6523 4.345859 ACGGTCCAATTTCTTCAGTGTA 57.654 40.909 0.00 0.00 0.00 2.90
4333 6541 3.551890 GTGATGTCACAGCAAGTATACGG 59.448 47.826 0.00 0.00 45.75 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.