Multiple sequence alignment - TraesCS7D01G016300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G016300 chr7D 100.000 4116 0 0 1 4116 7170309 7174424 0.000000e+00 7601.0
1 TraesCS7D01G016300 chr7D 93.623 1035 45 8 2196 3218 7186525 7187550 0.000000e+00 1526.0
2 TraesCS7D01G016300 chr7D 82.378 471 52 20 3474 3919 7190783 7191247 8.350000e-102 381.0
3 TraesCS7D01G016300 chr7D 90.952 210 13 4 3712 3919 7192718 7192923 1.130000e-70 278.0
4 TraesCS7D01G016300 chr7D 84.825 257 37 2 1 257 552924508 552924762 1.470000e-64 257.0
5 TraesCS7D01G016300 chr7D 88.372 215 22 2 1706 1917 194453921 194454135 5.280000e-64 255.0
6 TraesCS7D01G016300 chr7D 88.660 97 10 1 4020 4116 7188502 7188597 2.600000e-22 117.0
7 TraesCS7D01G016300 chrUn 90.571 1856 124 16 1708 3543 51235575 51233751 0.000000e+00 2410.0
8 TraesCS7D01G016300 chrUn 90.379 1871 129 16 1693 3543 289093217 289095056 0.000000e+00 2410.0
9 TraesCS7D01G016300 chrUn 84.739 498 33 20 1 494 51192529 51192071 3.750000e-125 459.0
10 TraesCS7D01G016300 chrUn 84.646 495 34 19 1 491 51329230 51329686 4.850000e-124 455.0
11 TraesCS7D01G016300 chrUn 81.913 481 48 23 3471 3919 51233664 51233191 1.810000e-98 370.0
12 TraesCS7D01G016300 chrUn 81.913 481 48 24 3471 3919 289095143 289095616 1.810000e-98 370.0
13 TraesCS7D01G016300 chrUn 83.295 431 32 17 68 494 51238327 51237933 1.090000e-95 361.0
14 TraesCS7D01G016300 chrUn 88.119 101 12 0 3917 4017 51212472 51212572 2.010000e-23 121.0
15 TraesCS7D01G016300 chrUn 100.000 39 0 0 537 575 51236512 51236474 5.710000e-09 73.1
16 TraesCS7D01G016300 chr7A 95.419 1397 60 3 1693 3085 7937408 7938804 0.000000e+00 2222.0
17 TraesCS7D01G016300 chr7A 85.616 1599 162 40 2359 3919 7966005 7967573 0.000000e+00 1616.0
18 TraesCS7D01G016300 chr7A 85.553 1599 163 40 2359 3919 8105223 8106791 0.000000e+00 1611.0
19 TraesCS7D01G016300 chr7A 86.034 938 91 14 2657 3586 7967669 7968574 0.000000e+00 970.0
20 TraesCS7D01G016300 chr7A 85.775 935 96 12 2657 3586 8106887 8107789 0.000000e+00 955.0
21 TraesCS7D01G016300 chr7A 87.413 715 68 13 2716 3423 7910911 7910212 0.000000e+00 802.0
22 TraesCS7D01G016300 chr7A 81.181 728 69 36 2675 3378 8081677 8082360 1.310000e-144 523.0
23 TraesCS7D01G016300 chr7A 78.822 798 64 60 357 1107 7936202 7936941 1.360000e-119 440.0
24 TraesCS7D01G016300 chr7A 92.473 279 18 3 1 279 7934974 7935249 2.980000e-106 396.0
25 TraesCS7D01G016300 chr7A 93.897 213 10 2 3707 3919 8076942 8077151 6.640000e-83 318.0
26 TraesCS7D01G016300 chr7A 88.942 208 14 1 3918 4116 7940674 7940881 8.840000e-62 248.0
27 TraesCS7D01G016300 chr7A 87.429 175 13 1 3917 4082 8080772 8080946 4.200000e-45 193.0
28 TraesCS7D01G016300 chr7A 86.857 175 14 1 3917 4082 8201075 8201249 1.950000e-43 187.0
29 TraesCS7D01G016300 chr7A 85.405 185 19 4 3124 3308 8076368 8076544 7.030000e-43 185.0
30 TraesCS7D01G016300 chr7A 85.326 184 19 4 3125 3308 8196766 8196941 2.530000e-42 183.0
31 TraesCS7D01G016300 chr7A 83.065 124 18 1 3917 4037 7878829 7878706 4.350000e-20 110.0
32 TraesCS7D01G016300 chr4A 85.016 1248 107 41 2320 3557 732972652 732971475 0.000000e+00 1195.0
33 TraesCS7D01G016300 chr4A 83.757 905 106 24 2668 3560 732982214 732981339 0.000000e+00 819.0
34 TraesCS7D01G016300 chr4A 86.552 290 23 7 3642 3919 732968544 732968259 5.170000e-79 305.0
35 TraesCS7D01G016300 chr4A 95.337 193 8 1 3728 3919 732971271 732971079 5.170000e-79 305.0
36 TraesCS7D01G016300 chr4A 86.131 274 27 6 3648 3919 732906067 732905803 6.730000e-73 285.0
37 TraesCS7D01G016300 chr4A 88.186 237 19 5 3687 3919 732998769 732998538 1.460000e-69 274.0
38 TraesCS7D01G016300 chr4A 88.406 207 15 7 3917 4116 732964685 732964481 1.480000e-59 241.0
39 TraesCS7D01G016300 chr4A 91.089 101 9 0 3917 4017 733000952 733000852 2.000000e-28 137.0
40 TraesCS7D01G016300 chr4A 89.109 101 11 0 3917 4017 732998439 732998339 4.320000e-25 126.0
41 TraesCS7D01G016300 chr4A 95.082 61 3 0 2236 2296 732972712 732972652 3.390000e-16 97.1
42 TraesCS7D01G016300 chr2B 90.000 110 10 1 148 257 697519667 697519559 1.540000e-29 141.0
43 TraesCS7D01G016300 chr2B 80.833 120 20 3 140 258 741378913 741379030 1.580000e-14 91.6
44 TraesCS7D01G016300 chr1B 83.333 120 17 3 140 258 598421721 598421838 1.560000e-19 108.0
45 TraesCS7D01G016300 chr7B 78.295 129 24 4 130 257 674284273 674284398 3.410000e-11 80.5
46 TraesCS7D01G016300 chr6A 100.000 29 0 0 1 29 36379861 36379833 2.000000e-03 54.7
47 TraesCS7D01G016300 chr5A 100.000 29 0 0 1 29 214937385 214937357 2.000000e-03 54.7
48 TraesCS7D01G016300 chr1D 100.000 29 0 0 1 29 460800047 460800075 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G016300 chr7D 7170309 7174424 4115 False 7601.000 7601 100.00000 1 4116 1 chr7D.!!$F1 4115
1 TraesCS7D01G016300 chr7D 7186525 7192923 6398 False 575.500 1526 88.90325 2196 4116 4 chr7D.!!$F4 1920
2 TraesCS7D01G016300 chrUn 289093217 289095616 2399 False 1390.000 2410 86.14600 1693 3919 2 chrUn.!!$F3 2226
3 TraesCS7D01G016300 chrUn 51233191 51238327 5136 True 803.525 2410 88.94475 68 3919 4 chrUn.!!$R2 3851
4 TraesCS7D01G016300 chr7A 7966005 7968574 2569 False 1293.000 1616 85.82500 2359 3919 2 chr7A.!!$F4 1560
5 TraesCS7D01G016300 chr7A 8105223 8107789 2566 False 1283.000 1611 85.66400 2359 3919 2 chr7A.!!$F6 1560
6 TraesCS7D01G016300 chr7A 7934974 7940881 5907 False 826.500 2222 88.91400 1 4116 4 chr7A.!!$F3 4115
7 TraesCS7D01G016300 chr7A 7910212 7910911 699 True 802.000 802 87.41300 2716 3423 1 chr7A.!!$R2 707
8 TraesCS7D01G016300 chr7A 8076368 8082360 5992 False 304.750 523 86.97800 2675 4082 4 chr7A.!!$F5 1407
9 TraesCS7D01G016300 chr4A 732981339 732982214 875 True 819.000 819 83.75700 2668 3560 1 chr4A.!!$R2 892
10 TraesCS7D01G016300 chr4A 732964481 732972712 8231 True 428.620 1195 90.07860 2236 4116 5 chr4A.!!$R3 1880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
814 3096 0.458669 TTAGATCGTGCCTCCGAACC 59.541 55.0 0.00 0.00 40.73 3.62 F
1616 4055 0.042621 GCAGATTTCTAAGCGAGCGC 60.043 55.0 6.78 6.78 42.33 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 4111 0.393808 GGAGGACCTGCGGCAATAAA 60.394 55.000 3.44 0.0 0.00 1.40 R
3359 9212 2.031245 CGGATAATGCGGCAATAAAGCA 60.031 45.455 6.82 0.0 45.46 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.301479 GTTTCGTTCCCCACTCGCT 60.301 57.895 0.00 0.00 0.00 4.93
39 40 4.201679 TCGATACGTGCTGGGCGG 62.202 66.667 0.00 0.00 0.00 6.13
185 186 1.045407 TAGATTAGGGGCGCAATCGT 58.955 50.000 10.83 2.21 36.48 3.73
213 214 2.074729 TGGACGTTGGGGTTCATTTT 57.925 45.000 0.00 0.00 0.00 1.82
223 224 1.824852 GGGTTCATTTTGCCGGATCTT 59.175 47.619 5.05 0.00 0.00 2.40
228 229 3.020984 TCATTTTGCCGGATCTTTACCC 58.979 45.455 5.05 0.00 0.00 3.69
279 283 1.444836 TAATTTGGACGTGGAAGCCG 58.555 50.000 0.00 0.00 0.00 5.52
280 284 0.536460 AATTTGGACGTGGAAGCCGT 60.536 50.000 0.00 0.00 42.06 5.68
284 288 3.041940 GACGTGGAAGCCGTGGTG 61.042 66.667 0.00 0.00 38.92 4.17
286 290 2.047274 CGTGGAAGCCGTGGTGAT 60.047 61.111 0.00 0.00 0.00 3.06
289 293 2.124695 GGAAGCCGTGGTGATCCC 60.125 66.667 0.00 0.00 0.00 3.85
290 294 2.670148 GGAAGCCGTGGTGATCCCT 61.670 63.158 0.00 0.00 0.00 4.20
291 295 1.299976 GAAGCCGTGGTGATCCCTT 59.700 57.895 0.00 0.00 0.00 3.95
292 296 0.744771 GAAGCCGTGGTGATCCCTTC 60.745 60.000 0.00 0.00 0.00 3.46
307 1204 1.918957 CCCTTCCCTCCATATCCATCC 59.081 57.143 0.00 0.00 0.00 3.51
334 1237 1.547372 GGGAGCGTGTGGAAAGTAGTA 59.453 52.381 0.00 0.00 0.00 1.82
335 1238 2.603953 GGAGCGTGTGGAAAGTAGTAC 58.396 52.381 0.00 0.00 0.00 2.73
336 1239 2.248487 GAGCGTGTGGAAAGTAGTACG 58.752 52.381 0.00 0.00 34.93 3.67
352 1255 1.837538 TACGCAGTTTTGAGCACCGC 61.838 55.000 0.00 0.00 37.78 5.68
353 1256 2.896801 CGCAGTTTTGAGCACCGCT 61.897 57.895 0.00 0.00 43.88 5.52
354 1257 1.370900 GCAGTTTTGAGCACCGCTG 60.371 57.895 0.00 0.00 39.88 5.18
355 1258 2.024918 CAGTTTTGAGCACCGCTGT 58.975 52.632 0.00 0.00 39.88 4.40
378 1281 1.985116 GCTCCTCGTGACCCTCCTT 60.985 63.158 0.00 0.00 0.00 3.36
456 1359 3.799753 CGCACTGATGGGCACTAC 58.200 61.111 0.00 0.00 31.21 2.73
457 1360 1.219124 CGCACTGATGGGCACTACT 59.781 57.895 0.00 0.00 31.21 2.57
458 1361 0.459899 CGCACTGATGGGCACTACTA 59.540 55.000 0.00 0.00 31.21 1.82
459 1362 1.536922 CGCACTGATGGGCACTACTAG 60.537 57.143 0.00 0.00 31.21 2.57
460 1363 1.808133 GCACTGATGGGCACTACTAGC 60.808 57.143 0.00 0.00 0.00 3.42
491 1395 3.975035 GTGAAGTTGAAGCCAAATCGAAC 59.025 43.478 0.00 0.00 33.49 3.95
494 1398 3.476552 AGTTGAAGCCAAATCGAACTGA 58.523 40.909 0.00 0.00 33.49 3.41
496 1400 4.083110 AGTTGAAGCCAAATCGAACTGATG 60.083 41.667 0.00 0.00 37.39 3.07
497 1401 2.162208 TGAAGCCAAATCGAACTGATGC 59.838 45.455 0.00 0.00 37.39 3.91
498 1402 1.825090 AGCCAAATCGAACTGATGCA 58.175 45.000 0.00 0.00 37.39 3.96
499 1403 2.372264 AGCCAAATCGAACTGATGCAT 58.628 42.857 0.00 0.00 37.39 3.96
501 1405 2.456989 CCAAATCGAACTGATGCATGC 58.543 47.619 11.82 11.82 37.39 4.06
502 1406 2.106418 CAAATCGAACTGATGCATGCG 58.894 47.619 14.09 0.35 37.39 4.73
503 1407 1.372582 AATCGAACTGATGCATGCGT 58.627 45.000 13.43 13.43 37.39 5.24
509 1413 1.810853 CTGATGCATGCGTCCGTGA 60.811 57.895 31.77 15.82 0.00 4.35
533 2800 1.734117 TGACGACGACATGCAGCAG 60.734 57.895 0.00 0.00 0.00 4.24
534 2801 1.444383 GACGACGACATGCAGCAGA 60.444 57.895 0.00 0.00 0.00 4.26
590 2872 4.534168 CGCATGCCTCAAGATTAAGATTG 58.466 43.478 13.15 0.00 0.00 2.67
596 2878 4.212214 GCCTCAAGATTAAGATTGTAGGCG 59.788 45.833 18.79 0.00 38.60 5.52
597 2879 5.360591 CCTCAAGATTAAGATTGTAGGCGT 58.639 41.667 3.22 0.00 0.00 5.68
598 2880 5.463724 CCTCAAGATTAAGATTGTAGGCGTC 59.536 44.000 3.22 0.00 0.00 5.19
599 2881 5.041287 TCAAGATTAAGATTGTAGGCGTCG 58.959 41.667 0.00 0.00 0.00 5.12
603 2885 6.103997 AGATTAAGATTGTAGGCGTCGAAAA 58.896 36.000 0.00 0.00 0.00 2.29
605 2887 2.618053 AGATTGTAGGCGTCGAAAAGG 58.382 47.619 0.00 0.00 0.00 3.11
608 2890 0.669318 TGTAGGCGTCGAAAAGGCAG 60.669 55.000 11.72 0.00 40.59 4.85
609 2891 0.669625 GTAGGCGTCGAAAAGGCAGT 60.670 55.000 11.72 0.00 40.59 4.40
610 2892 0.889994 TAGGCGTCGAAAAGGCAGTA 59.110 50.000 11.72 0.00 40.59 2.74
611 2893 0.669625 AGGCGTCGAAAAGGCAGTAC 60.670 55.000 11.72 0.00 40.59 2.73
612 2894 0.669625 GGCGTCGAAAAGGCAGTACT 60.670 55.000 0.00 0.00 40.59 2.73
614 2896 2.331194 GCGTCGAAAAGGCAGTACTAA 58.669 47.619 0.00 0.00 38.64 2.24
617 2899 3.985925 CGTCGAAAAGGCAGTACTAAAGT 59.014 43.478 0.00 0.00 0.00 2.66
619 2901 4.986659 GTCGAAAAGGCAGTACTAAAGTGA 59.013 41.667 0.00 0.00 0.00 3.41
620 2902 4.986659 TCGAAAAGGCAGTACTAAAGTGAC 59.013 41.667 0.00 0.00 36.72 3.67
624 2906 4.258702 AGGCAGTACTAAAGTGACACTG 57.741 45.455 9.33 0.00 39.27 3.66
625 2907 3.641906 AGGCAGTACTAAAGTGACACTGT 59.358 43.478 9.33 6.13 39.27 3.55
626 2908 3.988517 GGCAGTACTAAAGTGACACTGTC 59.011 47.826 9.33 1.86 39.03 3.51
631 2913 5.597182 AGTACTAAAGTGACACTGTCAGGAA 59.403 40.000 12.33 0.00 43.57 3.36
633 2915 2.918712 AAGTGACACTGTCAGGAAGG 57.081 50.000 12.33 0.00 43.57 3.46
634 2916 2.088104 AGTGACACTGTCAGGAAGGA 57.912 50.000 12.33 0.00 43.57 3.36
641 2923 1.535444 TGTCAGGAAGGAAGCCCGA 60.535 57.895 0.00 0.00 37.58 5.14
642 2924 1.219393 GTCAGGAAGGAAGCCCGAG 59.781 63.158 0.00 0.00 37.58 4.63
643 2925 1.990060 TCAGGAAGGAAGCCCGAGG 60.990 63.158 0.00 0.00 37.58 4.63
644 2926 1.990060 CAGGAAGGAAGCCCGAGGA 60.990 63.158 0.00 0.00 37.58 3.71
645 2927 1.990614 AGGAAGGAAGCCCGAGGAC 60.991 63.158 0.00 0.00 37.58 3.85
646 2928 1.990614 GGAAGGAAGCCCGAGGACT 60.991 63.158 0.00 0.00 37.58 3.85
656 2938 3.579685 CGAGGACTCGCAGACTCA 58.420 61.111 8.93 0.00 46.50 3.41
695 2977 3.485877 CGCAGCAGGAAACTAGTTAATGC 60.486 47.826 22.52 22.52 40.21 3.56
704 2986 4.632538 AACTAGTTAATGCCGGCAATTC 57.367 40.909 36.33 22.72 0.00 2.17
706 2988 4.013728 ACTAGTTAATGCCGGCAATTCAA 58.986 39.130 36.33 21.03 0.00 2.69
713 2995 7.651704 AGTTAATGCCGGCAATTCAATTTATAC 59.348 33.333 36.33 21.61 0.00 1.47
717 2999 6.344500 TGCCGGCAATTCAATTTATACAAAT 58.656 32.000 30.74 0.00 35.84 2.32
810 3092 0.861837 GCATTTAGATCGTGCCTCCG 59.138 55.000 4.70 0.00 32.88 4.63
814 3096 0.458669 TTAGATCGTGCCTCCGAACC 59.541 55.000 0.00 0.00 40.73 3.62
857 3169 1.205893 CGGTCTTCTTCCTCCTTCCTG 59.794 57.143 0.00 0.00 0.00 3.86
903 3215 3.369576 GGATCCTAGTCTCACAACCCAAC 60.370 52.174 3.84 0.00 0.00 3.77
905 3217 1.337823 CCTAGTCTCACAACCCAACCG 60.338 57.143 0.00 0.00 0.00 4.44
932 3251 1.990060 CTTCCGCTCCCTCCTCCAA 60.990 63.158 0.00 0.00 0.00 3.53
933 3252 1.537889 TTCCGCTCCCTCCTCCAAA 60.538 57.895 0.00 0.00 0.00 3.28
934 3253 0.914417 TTCCGCTCCCTCCTCCAAAT 60.914 55.000 0.00 0.00 0.00 2.32
935 3254 0.914417 TCCGCTCCCTCCTCCAAATT 60.914 55.000 0.00 0.00 0.00 1.82
936 3255 0.837272 CCGCTCCCTCCTCCAAATTA 59.163 55.000 0.00 0.00 0.00 1.40
1053 3378 3.068165 TCCATGTATGTGCTCCTCTAACG 59.932 47.826 0.00 0.00 0.00 3.18
1091 3428 3.498121 CCTCTGCTATTCATTCATGGCCT 60.498 47.826 3.32 0.00 29.70 5.19
1092 3429 4.142790 CTCTGCTATTCATTCATGGCCTT 58.857 43.478 3.32 0.00 29.70 4.35
1093 3430 4.139786 TCTGCTATTCATTCATGGCCTTC 58.860 43.478 3.32 0.00 29.70 3.46
1094 3431 3.225104 TGCTATTCATTCATGGCCTTCC 58.775 45.455 3.32 0.00 29.70 3.46
1140 3520 0.463833 CTTTATGCCTGTCCGGTCCC 60.464 60.000 0.00 0.00 34.25 4.46
1162 3542 3.420417 CGCAATTAAAAGCTTCACGTTGC 60.420 43.478 20.56 20.56 37.82 4.17
1173 3553 2.148916 TCACGTTGCTTCAGTACCAG 57.851 50.000 0.00 0.00 0.00 4.00
1174 3554 0.512952 CACGTTGCTTCAGTACCAGC 59.487 55.000 2.94 2.94 36.49 4.85
1178 3558 2.222027 GTTGCTTCAGTACCAGCAGTT 58.778 47.619 10.84 0.00 46.55 3.16
1180 3560 3.981071 TGCTTCAGTACCAGCAGTTAT 57.019 42.857 7.70 0.00 41.20 1.89
1183 3563 3.868077 GCTTCAGTACCAGCAGTTATCAG 59.132 47.826 4.76 0.00 35.95 2.90
1184 3564 4.621747 GCTTCAGTACCAGCAGTTATCAGT 60.622 45.833 4.76 0.00 35.95 3.41
1185 3565 4.456280 TCAGTACCAGCAGTTATCAGTG 57.544 45.455 0.00 0.00 0.00 3.66
1223 3603 4.990426 CGCCCTTGATTTCTGTTTGATTTT 59.010 37.500 0.00 0.00 0.00 1.82
1224 3604 5.466393 CGCCCTTGATTTCTGTTTGATTTTT 59.534 36.000 0.00 0.00 0.00 1.94
1226 3606 6.707608 GCCCTTGATTTCTGTTTGATTTTTCT 59.292 34.615 0.00 0.00 0.00 2.52
1228 3608 8.146412 CCCTTGATTTCTGTTTGATTTTTCTCT 58.854 33.333 0.00 0.00 0.00 3.10
1231 3611 9.740239 TTGATTTCTGTTTGATTTTTCTCTCTG 57.260 29.630 0.00 0.00 0.00 3.35
1235 3615 6.963796 TCTGTTTGATTTTTCTCTCTGCTTC 58.036 36.000 0.00 0.00 0.00 3.86
1236 3616 6.543465 TCTGTTTGATTTTTCTCTCTGCTTCA 59.457 34.615 0.00 0.00 0.00 3.02
1238 3618 7.143340 TGTTTGATTTTTCTCTCTGCTTCATG 58.857 34.615 0.00 0.00 0.00 3.07
1242 3622 7.982224 TGATTTTTCTCTCTGCTTCATGTATG 58.018 34.615 0.00 0.00 0.00 2.39
1256 3636 2.024176 TGTATGCTTTCGCCTCTTCC 57.976 50.000 0.00 0.00 34.43 3.46
1261 3641 1.072331 TGCTTTCGCCTCTTCCTCTTT 59.928 47.619 0.00 0.00 34.43 2.52
1262 3642 1.735018 GCTTTCGCCTCTTCCTCTTTC 59.265 52.381 0.00 0.00 0.00 2.62
1271 3651 3.387699 CCTCTTCCTCTTTCTCTCCATCC 59.612 52.174 0.00 0.00 0.00 3.51
1274 3654 4.408270 TCTTCCTCTTTCTCTCCATCCATG 59.592 45.833 0.00 0.00 0.00 3.66
1290 3670 0.664761 CATGGCTTGGTTAGGATGCG 59.335 55.000 0.00 0.00 0.00 4.73
1291 3671 0.255890 ATGGCTTGGTTAGGATGCGT 59.744 50.000 0.00 0.00 0.00 5.24
1292 3672 0.906066 TGGCTTGGTTAGGATGCGTA 59.094 50.000 0.00 0.00 0.00 4.42
1293 3673 1.296727 GGCTTGGTTAGGATGCGTAC 58.703 55.000 0.00 0.00 0.00 3.67
1295 3675 2.629051 GCTTGGTTAGGATGCGTACTT 58.371 47.619 0.00 0.00 0.00 2.24
1297 3677 3.596214 CTTGGTTAGGATGCGTACTTGT 58.404 45.455 0.00 0.00 0.00 3.16
1300 3680 2.343101 GTTAGGATGCGTACTTGTGCA 58.657 47.619 0.00 0.00 46.51 4.57
1305 3685 2.839629 TGCGTACTTGTGCATCCTG 58.160 52.632 0.00 0.00 35.90 3.86
1306 3686 0.320050 TGCGTACTTGTGCATCCTGA 59.680 50.000 0.00 0.00 35.90 3.86
1307 3687 1.066215 TGCGTACTTGTGCATCCTGAT 60.066 47.619 0.00 0.00 35.90 2.90
1308 3688 1.328680 GCGTACTTGTGCATCCTGATG 59.671 52.381 2.72 2.72 41.60 3.07
1324 3704 3.250280 CCTGATGTGATGTGCTCTAATGC 59.750 47.826 0.00 0.00 0.00 3.56
1327 3707 0.305922 GTGATGTGCTCTAATGCCGC 59.694 55.000 0.00 0.00 0.00 6.53
1330 3710 2.902343 GTGCTCTAATGCCGCCCC 60.902 66.667 0.00 0.00 0.00 5.80
1331 3711 4.545706 TGCTCTAATGCCGCCCCG 62.546 66.667 0.00 0.00 0.00 5.73
1332 3712 4.235762 GCTCTAATGCCGCCCCGA 62.236 66.667 0.00 0.00 0.00 5.14
1355 3739 7.326063 CCGAAAAATACAAGGAGAAAATGACAC 59.674 37.037 0.00 0.00 0.00 3.67
1367 3751 4.889409 AGAAAATGACACCTTTTCTGCTCA 59.111 37.500 13.50 0.00 46.13 4.26
1368 3752 5.360714 AGAAAATGACACCTTTTCTGCTCAA 59.639 36.000 13.50 0.00 46.13 3.02
1369 3753 4.574599 AATGACACCTTTTCTGCTCAAC 57.425 40.909 0.00 0.00 0.00 3.18
1371 3755 1.264288 GACACCTTTTCTGCTCAACCG 59.736 52.381 0.00 0.00 0.00 4.44
1372 3756 1.134220 ACACCTTTTCTGCTCAACCGA 60.134 47.619 0.00 0.00 0.00 4.69
1374 3758 1.416401 ACCTTTTCTGCTCAACCGAGA 59.584 47.619 0.00 0.00 42.34 4.04
1375 3759 2.039084 ACCTTTTCTGCTCAACCGAGAT 59.961 45.455 0.00 0.00 42.34 2.75
1376 3760 3.260884 ACCTTTTCTGCTCAACCGAGATA 59.739 43.478 0.00 0.00 42.34 1.98
1377 3761 3.619038 CCTTTTCTGCTCAACCGAGATAC 59.381 47.826 0.00 0.00 42.34 2.24
1378 3762 3.953712 TTTCTGCTCAACCGAGATACA 57.046 42.857 0.00 0.00 42.34 2.29
1379 3763 2.941453 TCTGCTCAACCGAGATACAC 57.059 50.000 0.00 0.00 42.34 2.90
1380 3764 2.447443 TCTGCTCAACCGAGATACACT 58.553 47.619 0.00 0.00 42.34 3.55
1382 3766 3.628032 TCTGCTCAACCGAGATACACTAG 59.372 47.826 0.00 0.00 42.34 2.57
1383 3767 3.353557 TGCTCAACCGAGATACACTAGT 58.646 45.455 0.00 0.00 42.34 2.57
1384 3768 4.520179 TGCTCAACCGAGATACACTAGTA 58.480 43.478 0.00 0.00 42.34 1.82
1407 3843 8.951243 AGTACAGAATTAATCTTTCTTTCTGCC 58.049 33.333 11.01 4.65 44.44 4.85
1408 3844 7.163001 ACAGAATTAATCTTTCTTTCTGCCC 57.837 36.000 11.01 0.00 44.44 5.36
1409 3845 6.721208 ACAGAATTAATCTTTCTTTCTGCCCA 59.279 34.615 11.01 0.00 44.44 5.36
1410 3846 7.233348 ACAGAATTAATCTTTCTTTCTGCCCAA 59.767 33.333 11.01 0.00 44.44 4.12
1411 3847 7.543520 CAGAATTAATCTTTCTTTCTGCCCAAC 59.456 37.037 0.00 0.00 37.54 3.77
1412 3848 6.916360 ATTAATCTTTCTTTCTGCCCAACA 57.084 33.333 0.00 0.00 0.00 3.33
1423 3859 2.502213 TGCCCAACAGATACGATACG 57.498 50.000 0.00 0.00 0.00 3.06
1424 3860 2.025898 TGCCCAACAGATACGATACGA 58.974 47.619 0.00 0.00 0.00 3.43
1425 3861 2.626266 TGCCCAACAGATACGATACGAT 59.374 45.455 0.00 0.00 0.00 3.73
1426 3862 3.822167 TGCCCAACAGATACGATACGATA 59.178 43.478 0.00 0.00 0.00 2.92
1427 3863 4.164294 GCCCAACAGATACGATACGATAC 58.836 47.826 0.00 0.00 0.00 2.24
1428 3864 4.320714 GCCCAACAGATACGATACGATACA 60.321 45.833 0.00 0.00 0.00 2.29
1429 3865 5.152097 CCCAACAGATACGATACGATACAC 58.848 45.833 0.00 0.00 0.00 2.90
1430 3866 5.048921 CCCAACAGATACGATACGATACACT 60.049 44.000 0.00 0.00 0.00 3.55
1431 3867 5.851703 CCAACAGATACGATACGATACACTG 59.148 44.000 0.00 0.00 0.00 3.66
1435 3871 6.146837 ACAGATACGATACGATACACTGGTAC 59.853 42.308 0.00 0.00 30.94 3.34
1443 3879 3.512329 ACGATACACTGGTACCAATGTCA 59.488 43.478 30.83 17.76 37.56 3.58
1448 3884 2.038426 CACTGGTACCAATGTCACCTCA 59.962 50.000 17.11 0.00 33.28 3.86
1449 3885 2.038557 ACTGGTACCAATGTCACCTCAC 59.961 50.000 17.11 0.00 33.28 3.51
1450 3886 1.349688 TGGTACCAATGTCACCTCACC 59.650 52.381 13.60 0.00 33.28 4.02
1451 3887 1.628846 GGTACCAATGTCACCTCACCT 59.371 52.381 7.15 0.00 0.00 4.00
1452 3888 2.354805 GGTACCAATGTCACCTCACCTC 60.355 54.545 7.15 0.00 0.00 3.85
1453 3889 0.321671 ACCAATGTCACCTCACCTCG 59.678 55.000 0.00 0.00 0.00 4.63
1454 3890 0.391661 CCAATGTCACCTCACCTCGG 60.392 60.000 0.00 0.00 0.00 4.63
1455 3891 1.021390 CAATGTCACCTCACCTCGGC 61.021 60.000 0.00 0.00 0.00 5.54
1456 3892 1.480212 AATGTCACCTCACCTCGGCA 61.480 55.000 0.00 0.00 0.00 5.69
1457 3893 1.892819 ATGTCACCTCACCTCGGCAG 61.893 60.000 0.00 0.00 0.00 4.85
1458 3894 3.695606 TCACCTCACCTCGGCAGC 61.696 66.667 0.00 0.00 0.00 5.25
1459 3895 3.699894 CACCTCACCTCGGCAGCT 61.700 66.667 0.00 0.00 0.00 4.24
1460 3896 2.925170 ACCTCACCTCGGCAGCTT 60.925 61.111 0.00 0.00 0.00 3.74
1461 3897 2.435586 CCTCACCTCGGCAGCTTG 60.436 66.667 0.00 0.00 0.00 4.01
1462 3898 2.659016 CTCACCTCGGCAGCTTGA 59.341 61.111 0.00 0.00 0.00 3.02
1463 3899 1.004560 CTCACCTCGGCAGCTTGAA 60.005 57.895 0.00 0.00 0.00 2.69
1464 3900 1.004560 TCACCTCGGCAGCTTGAAG 60.005 57.895 0.00 0.00 0.00 3.02
1465 3901 2.359230 ACCTCGGCAGCTTGAAGC 60.359 61.111 9.59 9.59 42.84 3.86
1481 3917 7.823149 GCTTGAAGCTTGATTGATTGTATTT 57.177 32.000 10.44 0.00 38.45 1.40
1482 3918 8.915871 GCTTGAAGCTTGATTGATTGTATTTA 57.084 30.769 10.44 0.00 38.45 1.40
1483 3919 9.525409 GCTTGAAGCTTGATTGATTGTATTTAT 57.475 29.630 10.44 0.00 38.45 1.40
1486 3922 9.412460 TGAAGCTTGATTGATTGTATTTATCCT 57.588 29.630 2.10 0.00 0.00 3.24
1487 3923 9.890352 GAAGCTTGATTGATTGTATTTATCCTC 57.110 33.333 2.10 0.00 0.00 3.71
1488 3924 8.401490 AGCTTGATTGATTGTATTTATCCTCC 57.599 34.615 0.00 0.00 0.00 4.30
1489 3925 8.223330 AGCTTGATTGATTGTATTTATCCTCCT 58.777 33.333 0.00 0.00 0.00 3.69
1490 3926 8.854117 GCTTGATTGATTGTATTTATCCTCCTT 58.146 33.333 0.00 0.00 0.00 3.36
1525 3961 1.474077 GACCGGATCAGCAGCAAAATT 59.526 47.619 9.46 0.00 0.00 1.82
1526 3962 2.682856 GACCGGATCAGCAGCAAAATTA 59.317 45.455 9.46 0.00 0.00 1.40
1530 3966 4.275689 CCGGATCAGCAGCAAAATTATACA 59.724 41.667 0.00 0.00 0.00 2.29
1531 3967 5.446709 CGGATCAGCAGCAAAATTATACAG 58.553 41.667 0.00 0.00 0.00 2.74
1532 3968 5.008019 CGGATCAGCAGCAAAATTATACAGT 59.992 40.000 0.00 0.00 0.00 3.55
1533 3969 6.202762 CGGATCAGCAGCAAAATTATACAGTA 59.797 38.462 0.00 0.00 0.00 2.74
1535 3971 6.363577 TCAGCAGCAAAATTATACAGTAGC 57.636 37.500 0.00 0.00 0.00 3.58
1536 3972 6.115446 TCAGCAGCAAAATTATACAGTAGCT 58.885 36.000 0.00 0.00 0.00 3.32
1542 3978 8.737168 AGCAAAATTATACAGTAGCTGATTGA 57.263 30.769 0.00 0.00 35.18 2.57
1543 3979 8.616076 AGCAAAATTATACAGTAGCTGATTGAC 58.384 33.333 0.00 0.00 35.18 3.18
1544 3980 8.616076 GCAAAATTATACAGTAGCTGATTGACT 58.384 33.333 0.00 0.00 35.18 3.41
1558 3994 4.081406 TGATTGACTCTTCCCCAATTGTG 58.919 43.478 4.43 0.00 31.40 3.33
1581 4017 6.533367 GTGTTTCTGCATTTTGTTCCTGTTTA 59.467 34.615 0.00 0.00 0.00 2.01
1582 4018 6.533367 TGTTTCTGCATTTTGTTCCTGTTTAC 59.467 34.615 0.00 0.00 0.00 2.01
1588 4026 6.700960 TGCATTTTGTTCCTGTTTACATTCAG 59.299 34.615 0.00 0.00 0.00 3.02
1590 4028 4.481930 TTGTTCCTGTTTACATTCAGCG 57.518 40.909 0.00 0.00 0.00 5.18
1594 4033 4.137116 TCCTGTTTACATTCAGCGCTAT 57.863 40.909 10.99 0.00 0.00 2.97
1616 4055 0.042621 GCAGATTTCTAAGCGAGCGC 60.043 55.000 6.78 6.78 42.33 5.92
1633 4075 0.807275 CGCGAGCATCCATCTTGTGA 60.807 55.000 0.00 0.00 0.00 3.58
1637 4079 3.181493 GCGAGCATCCATCTTGTGAAATT 60.181 43.478 0.00 0.00 0.00 1.82
1641 4083 6.510799 CGAGCATCCATCTTGTGAAATTACTC 60.511 42.308 0.00 0.00 0.00 2.59
1645 4087 5.185454 TCCATCTTGTGAAATTACTCGCAT 58.815 37.500 0.00 0.00 35.82 4.73
1646 4088 5.294306 TCCATCTTGTGAAATTACTCGCATC 59.706 40.000 0.00 0.00 35.82 3.91
1647 4089 5.065090 CCATCTTGTGAAATTACTCGCATCA 59.935 40.000 0.00 0.00 35.82 3.07
1648 4090 5.530519 TCTTGTGAAATTACTCGCATCAC 57.469 39.130 0.00 0.00 40.53 3.06
1649 4091 5.237815 TCTTGTGAAATTACTCGCATCACT 58.762 37.500 5.88 0.00 40.70 3.41
1650 4092 5.348724 TCTTGTGAAATTACTCGCATCACTC 59.651 40.000 5.88 0.00 40.70 3.51
1651 4093 4.565022 TGTGAAATTACTCGCATCACTCA 58.435 39.130 5.88 0.00 40.70 3.41
1652 4094 4.388773 TGTGAAATTACTCGCATCACTCAC 59.611 41.667 5.88 0.00 40.70 3.51
1653 4095 3.932710 TGAAATTACTCGCATCACTCACC 59.067 43.478 0.00 0.00 0.00 4.02
1654 4096 3.610040 AATTACTCGCATCACTCACCA 57.390 42.857 0.00 0.00 0.00 4.17
1655 4097 3.827008 ATTACTCGCATCACTCACCAT 57.173 42.857 0.00 0.00 0.00 3.55
1656 4098 2.584492 TACTCGCATCACTCACCATG 57.416 50.000 0.00 0.00 0.00 3.66
1657 4099 0.107993 ACTCGCATCACTCACCATGG 60.108 55.000 11.19 11.19 0.00 3.66
1658 4100 0.176449 CTCGCATCACTCACCATGGA 59.824 55.000 21.47 0.00 0.00 3.41
1659 4101 0.832626 TCGCATCACTCACCATGGAT 59.167 50.000 21.47 0.00 0.00 3.41
1660 4102 1.202568 TCGCATCACTCACCATGGATC 60.203 52.381 21.47 0.00 0.00 3.36
1661 4103 1.473788 CGCATCACTCACCATGGATCA 60.474 52.381 21.47 0.00 0.00 2.92
1662 4104 2.809299 CGCATCACTCACCATGGATCAT 60.809 50.000 21.47 0.00 0.00 2.45
1663 4105 2.812591 GCATCACTCACCATGGATCATC 59.187 50.000 21.47 0.00 0.00 2.92
1664 4106 3.496337 GCATCACTCACCATGGATCATCT 60.496 47.826 21.47 0.00 0.00 2.90
1665 4107 4.316645 CATCACTCACCATGGATCATCTC 58.683 47.826 21.47 0.00 0.00 2.75
1666 4108 3.650948 TCACTCACCATGGATCATCTCT 58.349 45.455 21.47 0.00 0.00 3.10
1667 4109 3.387050 TCACTCACCATGGATCATCTCTG 59.613 47.826 21.47 3.23 0.00 3.35
1668 4110 3.387050 CACTCACCATGGATCATCTCTGA 59.613 47.826 21.47 8.03 35.41 3.27
1669 4111 4.040584 CACTCACCATGGATCATCTCTGAT 59.959 45.833 21.47 0.00 44.93 2.90
1670 4112 4.659368 ACTCACCATGGATCATCTCTGATT 59.341 41.667 21.47 0.00 42.27 2.57
1671 4113 5.132312 ACTCACCATGGATCATCTCTGATTT 59.868 40.000 21.47 0.00 42.27 2.17
1672 4114 6.328410 ACTCACCATGGATCATCTCTGATTTA 59.672 38.462 21.47 0.00 42.27 1.40
1673 4115 7.017353 ACTCACCATGGATCATCTCTGATTTAT 59.983 37.037 21.47 0.00 42.27 1.40
1674 4116 7.752638 TCACCATGGATCATCTCTGATTTATT 58.247 34.615 21.47 0.00 42.27 1.40
1675 4117 7.664318 TCACCATGGATCATCTCTGATTTATTG 59.336 37.037 21.47 0.00 42.27 1.90
1676 4118 6.433404 ACCATGGATCATCTCTGATTTATTGC 59.567 38.462 21.47 0.00 42.27 3.56
1677 4119 6.127703 CCATGGATCATCTCTGATTTATTGCC 60.128 42.308 5.56 0.00 42.27 4.52
1678 4120 4.999311 TGGATCATCTCTGATTTATTGCCG 59.001 41.667 0.00 0.00 42.27 5.69
1679 4121 4.142730 GGATCATCTCTGATTTATTGCCGC 60.143 45.833 0.00 0.00 42.27 6.53
1680 4122 3.807553 TCATCTCTGATTTATTGCCGCA 58.192 40.909 0.00 0.00 0.00 5.69
1681 4123 3.811497 TCATCTCTGATTTATTGCCGCAG 59.189 43.478 0.00 0.00 0.00 5.18
1682 4124 6.545908 ATCATCTCTGATTTATTGCCGCAGG 61.546 44.000 0.00 0.00 46.01 4.85
1683 4125 8.872888 ATCATCTCTGATTTATTGCCGCAGGT 62.873 42.308 0.00 0.00 45.30 4.00
1700 4142 2.364317 TCCTCCCCTTCCTCTGCG 60.364 66.667 0.00 0.00 0.00 5.18
1701 4143 4.168291 CCTCCCCTTCCTCTGCGC 62.168 72.222 0.00 0.00 0.00 6.09
1706 4148 4.821589 CCTTCCTCTGCGCCGTCC 62.822 72.222 4.18 0.00 0.00 4.79
1782 4227 2.434359 GGGGCAGAGCACGTACAC 60.434 66.667 0.00 0.00 29.41 2.90
1831 4276 4.785453 CTGCTGGACTTCGGGGGC 62.785 72.222 0.00 0.00 0.00 5.80
2118 4563 3.827898 GAGCCTCGTGTCCGGGAG 61.828 72.222 0.00 0.00 36.35 4.30
2224 4669 3.179265 CTCAAGTACACGCGCGGG 61.179 66.667 33.55 33.55 0.00 6.13
2278 4723 1.348064 TCATCTCCAACGTGACCCTT 58.652 50.000 0.00 0.00 0.00 3.95
2338 4783 2.431942 AACATCGTCGTGTCCGGC 60.432 61.111 0.00 0.00 34.69 6.13
2350 4795 3.458163 TCCGGCGTCACCATCCTC 61.458 66.667 6.01 0.00 39.03 3.71
2401 4852 2.600769 AACCCGGACTCGTGCTCT 60.601 61.111 0.73 0.00 33.95 4.09
3110 5804 2.375174 ACTACTTCAATGGCTGGGACAA 59.625 45.455 0.00 0.00 38.70 3.18
3233 9079 3.818773 TGGCTGCTTTGGTAACTTTAGAC 59.181 43.478 0.00 0.00 37.61 2.59
3271 9124 4.351407 TGTGGGTCCCTTACTGTTTCAATA 59.649 41.667 10.00 0.00 0.00 1.90
3354 9207 2.855514 GCAAGGCAGGCCGTCAAAA 61.856 57.895 4.37 0.00 41.95 2.44
3357 9210 1.455383 AAGGCAGGCCGTCAAAACTG 61.455 55.000 4.37 0.00 41.95 3.16
3359 9212 3.749981 CAGGCCGTCAAAACTGCT 58.250 55.556 0.00 0.00 36.05 4.24
3360 9213 1.283793 CAGGCCGTCAAAACTGCTG 59.716 57.895 0.00 0.00 36.05 4.41
3361 9214 2.050077 GGCCGTCAAAACTGCTGC 60.050 61.111 0.00 0.00 36.05 5.25
3365 12403 1.001815 GCCGTCAAAACTGCTGCTTTA 60.002 47.619 0.00 0.00 33.29 1.85
3370 12408 3.429881 GTCAAAACTGCTGCTTTATTGCC 59.570 43.478 0.00 0.00 0.00 4.52
3372 12410 0.109132 AACTGCTGCTTTATTGCCGC 60.109 50.000 0.00 0.00 42.22 6.53
3379 12417 3.568538 CTGCTTTATTGCCGCATTATCC 58.431 45.455 0.00 0.00 32.62 2.59
3402 12440 6.048073 CGATAATGAAAAGATCGGAAGCAA 57.952 37.500 0.00 0.00 38.99 3.91
3403 12441 6.662616 CGATAATGAAAAGATCGGAAGCAAT 58.337 36.000 0.00 0.00 38.99 3.56
3417 12455 4.261825 CGGAAGCAATAAAAGGTGAACCAA 60.262 41.667 1.62 0.00 38.89 3.67
3419 12457 6.052360 GGAAGCAATAAAAGGTGAACCAAAA 58.948 36.000 1.62 0.00 38.89 2.44
3439 12477 4.409718 AAAACCACCAACCATACCAAAC 57.590 40.909 0.00 0.00 0.00 2.93
3441 12479 2.871453 ACCACCAACCATACCAAACTC 58.129 47.619 0.00 0.00 0.00 3.01
3442 12480 2.167662 CCACCAACCATACCAAACTCC 58.832 52.381 0.00 0.00 0.00 3.85
3448 12486 1.553704 ACCATACCAAACTCCGACCTC 59.446 52.381 0.00 0.00 0.00 3.85
3452 12490 2.809601 CAAACTCCGACCTCGCCG 60.810 66.667 0.00 0.00 38.18 6.46
3466 12504 2.027169 GCCGCGACCGCTATACTT 59.973 61.111 8.23 0.00 39.32 2.24
3468 12506 0.109412 GCCGCGACCGCTATACTTAT 60.109 55.000 8.23 0.00 39.32 1.73
3469 12507 1.614385 CCGCGACCGCTATACTTATG 58.386 55.000 8.23 0.00 39.32 1.90
3511 12549 8.567948 TCAAAAGAGTAAGCAAATAAACCTCTG 58.432 33.333 0.00 0.00 0.00 3.35
3514 12552 7.856145 AGAGTAAGCAAATAAACCTCTGATG 57.144 36.000 0.00 0.00 0.00 3.07
3522 12560 5.824904 AATAAACCTCTGATGTGCATCAC 57.175 39.130 10.48 0.00 42.42 3.06
3523 12561 1.730501 AACCTCTGATGTGCATCACG 58.269 50.000 10.48 7.70 42.42 4.35
3557 12606 9.364989 GGAATACTCACAATCTATATCAAGAGC 57.635 37.037 0.00 0.00 0.00 4.09
3586 12635 8.798153 CAATTTATACCGAAGAGTCAAAATTGC 58.202 33.333 0.00 0.00 36.38 3.56
3590 12639 5.200368 ACCGAAGAGTCAAAATTGCAAAT 57.800 34.783 1.71 0.00 0.00 2.32
3594 12643 7.169140 ACCGAAGAGTCAAAATTGCAAATAAAC 59.831 33.333 1.71 0.00 0.00 2.01
3617 12959 8.455903 AACTTTATATATGCAGCACAACTCAT 57.544 30.769 0.00 0.00 0.00 2.90
3619 12961 9.559732 ACTTTATATATGCAGCACAACTCATAA 57.440 29.630 0.00 0.00 0.00 1.90
3627 12969 6.047870 TGCAGCACAACTCATAAATTTTTGT 58.952 32.000 8.25 4.32 0.00 2.83
3628 12970 6.538021 TGCAGCACAACTCATAAATTTTTGTT 59.462 30.769 8.25 1.54 0.00 2.83
3631 12973 9.248291 CAGCACAACTCATAAATTTTTGTTACT 57.752 29.630 8.25 4.55 0.00 2.24
3746 16901 4.080356 ACCTTCTATATGCAGCACAAAGGA 60.080 41.667 21.26 5.63 36.40 3.36
3859 17015 0.104855 TTGTCGCTGCTCTGTGAAGT 59.895 50.000 0.00 0.00 0.00 3.01
3882 17038 4.560743 TCACGCTGTGCCTGCCAA 62.561 61.111 4.15 0.00 32.98 4.52
3974 17231 1.342819 AGTGAAGTGAGTGGAGACAGC 59.657 52.381 0.00 0.00 44.46 4.40
4025 17291 0.108585 GCAAAGTGGGAGTGGAGTGA 59.891 55.000 0.00 0.00 0.00 3.41
4038 17304 1.002430 TGGAGTGATGTGCTTCCTGTC 59.998 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.201679 CCGCCCAGCACGTATCGA 62.202 66.667 0.00 0.00 0.00 3.59
64 65 4.603946 GGTGGGGCCGCTATCGTC 62.604 72.222 21.80 4.54 0.00 4.20
120 121 1.663379 GGGGGCGGTTTCATGCTAAC 61.663 60.000 0.00 0.00 0.00 2.34
185 186 0.037590 CCCAACGTCCAAATCCCTGA 59.962 55.000 0.00 0.00 0.00 3.86
213 214 1.562008 TGAATGGGTAAAGATCCGGCA 59.438 47.619 0.00 0.00 0.00 5.69
279 283 0.914417 TGGAGGGAAGGGATCACCAC 60.914 60.000 0.00 0.00 43.89 4.16
280 284 0.046242 ATGGAGGGAAGGGATCACCA 59.954 55.000 0.00 0.00 43.89 4.17
284 288 2.921221 TGGATATGGAGGGAAGGGATC 58.079 52.381 0.00 0.00 0.00 3.36
286 290 2.497289 GGATGGATATGGAGGGAAGGGA 60.497 54.545 0.00 0.00 0.00 4.20
289 293 3.008813 CACAGGATGGATATGGAGGGAAG 59.991 52.174 0.00 0.00 43.62 3.46
290 294 2.981784 CACAGGATGGATATGGAGGGAA 59.018 50.000 0.00 0.00 43.62 3.97
291 295 2.624495 CACAGGATGGATATGGAGGGA 58.376 52.381 0.00 0.00 43.62 4.20
334 1237 3.022287 CGGTGCTCAAAACTGCGT 58.978 55.556 0.00 0.00 0.00 5.24
335 1238 2.427410 GCGGTGCTCAAAACTGCG 60.427 61.111 0.00 0.00 39.93 5.18
352 1255 0.387878 GTCACGAGGAGCACAGACAG 60.388 60.000 0.00 0.00 0.00 3.51
353 1256 1.660355 GTCACGAGGAGCACAGACA 59.340 57.895 0.00 0.00 0.00 3.41
354 1257 1.080434 GGTCACGAGGAGCACAGAC 60.080 63.158 0.00 0.00 43.54 3.51
355 1258 2.276116 GGGTCACGAGGAGCACAGA 61.276 63.158 11.76 0.00 45.90 3.41
378 1281 1.671845 GGTGGTCACGTTTTACAAGCA 59.328 47.619 0.00 0.00 0.00 3.91
456 1359 1.079127 CTTCACGGGTGGTGGCTAG 60.079 63.158 0.00 0.00 46.96 3.42
457 1360 1.412453 AACTTCACGGGTGGTGGCTA 61.412 55.000 0.00 0.00 46.96 3.93
458 1361 2.752807 AACTTCACGGGTGGTGGCT 61.753 57.895 0.00 0.00 46.96 4.75
459 1362 2.203294 AACTTCACGGGTGGTGGC 60.203 61.111 0.00 0.00 46.96 5.01
460 1363 0.464735 TTCAACTTCACGGGTGGTGG 60.465 55.000 0.00 0.00 46.96 4.61
491 1395 1.759293 CTCACGGACGCATGCATCAG 61.759 60.000 16.56 14.40 0.00 2.90
494 1398 1.811266 GTCTCACGGACGCATGCAT 60.811 57.895 19.57 0.36 35.07 3.96
496 1400 3.188786 GGTCTCACGGACGCATGC 61.189 66.667 7.91 7.91 45.35 4.06
497 1401 2.880879 CGGTCTCACGGACGCATG 60.881 66.667 0.00 0.00 45.35 4.06
498 1402 3.371063 ACGGTCTCACGGACGCAT 61.371 61.111 0.00 0.00 45.35 4.73
499 1403 4.337060 CACGGTCTCACGGACGCA 62.337 66.667 0.00 0.00 45.35 5.24
501 1405 2.126965 GTCACGGTCTCACGGACG 60.127 66.667 0.00 0.00 45.35 4.79
502 1406 2.126965 CGTCACGGTCTCACGGAC 60.127 66.667 0.00 0.00 43.79 4.79
503 1407 2.281002 TCGTCACGGTCTCACGGA 60.281 61.111 0.00 0.00 38.39 4.69
509 1413 1.209383 CATGTCGTCGTCACGGTCT 59.791 57.895 0.00 0.00 46.70 3.85
575 2857 5.174035 CGACGCCTACAATCTTAATCTTGAG 59.826 44.000 4.63 0.00 0.00 3.02
590 2872 0.669625 ACTGCCTTTTCGACGCCTAC 60.670 55.000 0.00 0.00 0.00 3.18
596 2878 4.986659 TCACTTTAGTACTGCCTTTTCGAC 59.013 41.667 5.39 0.00 0.00 4.20
597 2879 4.986659 GTCACTTTAGTACTGCCTTTTCGA 59.013 41.667 5.39 0.00 0.00 3.71
598 2880 4.748102 TGTCACTTTAGTACTGCCTTTTCG 59.252 41.667 5.39 0.00 0.00 3.46
599 2881 5.758784 AGTGTCACTTTAGTACTGCCTTTTC 59.241 40.000 5.39 0.00 0.00 2.29
603 2885 3.641906 ACAGTGTCACTTTAGTACTGCCT 59.358 43.478 5.39 0.00 41.74 4.75
605 2887 4.617959 TGACAGTGTCACTTTAGTACTGC 58.382 43.478 22.06 0.00 41.74 4.40
608 2890 5.449107 TCCTGACAGTGTCACTTTAGTAC 57.551 43.478 22.06 0.00 37.67 2.73
609 2891 5.010719 CCTTCCTGACAGTGTCACTTTAGTA 59.989 44.000 22.06 0.00 37.67 1.82
610 2892 4.202264 CCTTCCTGACAGTGTCACTTTAGT 60.202 45.833 22.06 0.00 37.67 2.24
611 2893 4.039245 TCCTTCCTGACAGTGTCACTTTAG 59.961 45.833 22.06 15.10 37.67 1.85
612 2894 3.964688 TCCTTCCTGACAGTGTCACTTTA 59.035 43.478 22.06 7.08 37.67 1.85
614 2896 2.398588 TCCTTCCTGACAGTGTCACTT 58.601 47.619 22.06 0.00 37.67 3.16
617 2899 1.070758 GCTTCCTTCCTGACAGTGTCA 59.929 52.381 24.09 24.09 40.50 3.58
619 2901 0.398318 GGCTTCCTTCCTGACAGTGT 59.602 55.000 0.00 0.00 0.00 3.55
620 2902 0.322008 GGGCTTCCTTCCTGACAGTG 60.322 60.000 0.93 0.00 0.00 3.66
624 2906 1.219393 CTCGGGCTTCCTTCCTGAC 59.781 63.158 0.00 0.00 35.30 3.51
625 2907 1.990060 CCTCGGGCTTCCTTCCTGA 60.990 63.158 0.00 0.00 37.43 3.86
626 2908 1.990060 TCCTCGGGCTTCCTTCCTG 60.990 63.158 0.00 0.00 0.00 3.86
641 2923 0.326595 TCTCTGAGTCTGCGAGTCCT 59.673 55.000 4.32 0.00 31.54 3.85
642 2924 0.732571 CTCTCTGAGTCTGCGAGTCC 59.267 60.000 4.32 0.00 31.54 3.85
643 2925 0.732571 CCTCTCTGAGTCTGCGAGTC 59.267 60.000 13.85 6.48 33.05 3.36
644 2926 0.679640 CCCTCTCTGAGTCTGCGAGT 60.680 60.000 13.85 0.00 0.00 4.18
645 2927 1.383456 CCCCTCTCTGAGTCTGCGAG 61.383 65.000 9.41 9.41 0.00 5.03
646 2928 1.379176 CCCCTCTCTGAGTCTGCGA 60.379 63.158 4.32 0.00 0.00 5.10
649 2931 1.383456 CGCTCCCCTCTCTGAGTCTG 61.383 65.000 4.32 0.00 0.00 3.51
650 2932 1.077068 CGCTCCCCTCTCTGAGTCT 60.077 63.158 4.32 0.00 0.00 3.24
651 2933 0.467290 ATCGCTCCCCTCTCTGAGTC 60.467 60.000 4.32 0.00 0.00 3.36
652 2934 0.847373 TATCGCTCCCCTCTCTGAGT 59.153 55.000 4.32 0.00 0.00 3.41
654 2936 1.693627 GTTATCGCTCCCCTCTCTGA 58.306 55.000 0.00 0.00 0.00 3.27
656 2938 2.721945 CGTTATCGCTCCCCTCTCT 58.278 57.895 0.00 0.00 0.00 3.10
725 3007 9.288576 TCCTCATTATGGTGCTCTTATTTTATG 57.711 33.333 0.00 0.00 0.00 1.90
729 3011 9.866655 TTTATCCTCATTATGGTGCTCTTATTT 57.133 29.630 0.00 0.00 0.00 1.40
730 3012 9.866655 TTTTATCCTCATTATGGTGCTCTTATT 57.133 29.630 0.00 0.00 0.00 1.40
788 3070 2.555199 GAGGCACGATCTAAATGCACT 58.445 47.619 0.00 5.26 41.27 4.40
796 3078 1.389609 GGGTTCGGAGGCACGATCTA 61.390 60.000 5.18 0.00 43.11 1.98
834 3116 1.624312 GAAGGAGGAAGAAGACCGGTT 59.376 52.381 9.42 0.00 0.00 4.44
835 3117 1.268066 GAAGGAGGAAGAAGACCGGT 58.732 55.000 6.92 6.92 0.00 5.28
857 3169 3.131400 CCCCCTCTCGCTCTATTTATAGC 59.869 52.174 0.00 0.00 35.33 2.97
905 3217 2.517166 GAGCGGAAGGGATTGGCC 60.517 66.667 0.00 0.00 0.00 5.36
932 3251 3.181434 TGCCCCTGTCTCTGTTGTTAATT 60.181 43.478 0.00 0.00 0.00 1.40
933 3252 2.375174 TGCCCCTGTCTCTGTTGTTAAT 59.625 45.455 0.00 0.00 0.00 1.40
934 3253 1.771854 TGCCCCTGTCTCTGTTGTTAA 59.228 47.619 0.00 0.00 0.00 2.01
935 3254 1.347707 CTGCCCCTGTCTCTGTTGTTA 59.652 52.381 0.00 0.00 0.00 2.41
936 3255 0.109342 CTGCCCCTGTCTCTGTTGTT 59.891 55.000 0.00 0.00 0.00 2.83
982 3301 1.122227 ATTGCTGCTCCTCCTCTCTC 58.878 55.000 0.00 0.00 0.00 3.20
983 3302 0.831966 CATTGCTGCTCCTCCTCTCT 59.168 55.000 0.00 0.00 0.00 3.10
989 3314 2.437359 ACGCCATTGCTGCTCCTC 60.437 61.111 0.00 0.00 34.43 3.71
992 3317 4.527157 GCGACGCCATTGCTGCTC 62.527 66.667 9.14 0.00 34.45 4.26
1016 3341 1.236026 ATGGAGGAGGAGGGGTGGTA 61.236 60.000 0.00 0.00 0.00 3.25
1017 3342 2.581747 ATGGAGGAGGAGGGGTGGT 61.582 63.158 0.00 0.00 0.00 4.16
1113 3488 3.127030 CGGACAGGCATAAAGAAAGGAAC 59.873 47.826 0.00 0.00 0.00 3.62
1140 3520 3.420417 GCAACGTGAAGCTTTTAATTGCG 60.420 43.478 17.87 10.37 32.74 4.85
1162 3542 4.867047 CACTGATAACTGCTGGTACTGAAG 59.133 45.833 0.00 0.00 39.06 3.02
1173 3553 1.741706 ACTGCATGCACTGATAACTGC 59.258 47.619 18.46 0.00 0.00 4.40
1174 3554 3.400505 CACTGCATGCACTGATAACTG 57.599 47.619 18.46 6.25 0.00 3.16
1196 3576 3.923017 AACAGAAATCAAGGGCGAAAG 57.077 42.857 0.00 0.00 0.00 2.62
1201 3581 6.707608 AGAAAAATCAAACAGAAATCAAGGGC 59.292 34.615 0.00 0.00 0.00 5.19
1202 3582 8.146412 AGAGAAAAATCAAACAGAAATCAAGGG 58.854 33.333 0.00 0.00 0.00 3.95
1223 3603 4.750021 AGCATACATGAAGCAGAGAGAA 57.250 40.909 0.00 0.00 0.00 2.87
1224 3604 4.750021 AAGCATACATGAAGCAGAGAGA 57.250 40.909 0.00 0.00 0.00 3.10
1226 3606 3.867493 CGAAAGCATACATGAAGCAGAGA 59.133 43.478 0.00 0.00 0.00 3.10
1271 3651 0.664761 CGCATCCTAACCAAGCCATG 59.335 55.000 0.00 0.00 0.00 3.66
1274 3654 1.134491 AGTACGCATCCTAACCAAGCC 60.134 52.381 0.00 0.00 0.00 4.35
1290 3670 3.599343 TCACATCAGGATGCACAAGTAC 58.401 45.455 9.12 0.00 42.39 2.73
1291 3671 3.979101 TCACATCAGGATGCACAAGTA 57.021 42.857 9.12 0.00 42.39 2.24
1292 3672 2.865119 TCACATCAGGATGCACAAGT 57.135 45.000 9.12 0.00 42.39 3.16
1293 3673 3.014623 ACATCACATCAGGATGCACAAG 58.985 45.455 9.12 0.00 44.68 3.16
1295 3675 2.361789 CACATCACATCAGGATGCACA 58.638 47.619 9.12 0.00 44.68 4.57
1297 3677 1.064979 AGCACATCACATCAGGATGCA 60.065 47.619 9.12 0.00 44.68 3.96
1300 3680 5.306394 CATTAGAGCACATCACATCAGGAT 58.694 41.667 0.00 0.00 0.00 3.24
1301 3681 4.700700 CATTAGAGCACATCACATCAGGA 58.299 43.478 0.00 0.00 0.00 3.86
1302 3682 3.250280 GCATTAGAGCACATCACATCAGG 59.750 47.826 0.00 0.00 0.00 3.86
1303 3683 3.250280 GGCATTAGAGCACATCACATCAG 59.750 47.826 0.00 0.00 35.83 2.90
1304 3684 3.208594 GGCATTAGAGCACATCACATCA 58.791 45.455 0.00 0.00 35.83 3.07
1305 3685 2.222678 CGGCATTAGAGCACATCACATC 59.777 50.000 0.00 0.00 35.83 3.06
1306 3686 2.216046 CGGCATTAGAGCACATCACAT 58.784 47.619 0.00 0.00 35.83 3.21
1307 3687 1.655484 CGGCATTAGAGCACATCACA 58.345 50.000 0.00 0.00 35.83 3.58
1308 3688 0.305922 GCGGCATTAGAGCACATCAC 59.694 55.000 0.00 0.00 35.83 3.06
1324 3704 0.454196 CCTTGTATTTTTCGGGGCGG 59.546 55.000 0.00 0.00 0.00 6.13
1327 3707 5.715434 TTTTCTCCTTGTATTTTTCGGGG 57.285 39.130 0.00 0.00 0.00 5.73
1330 3710 7.326063 GGTGTCATTTTCTCCTTGTATTTTTCG 59.674 37.037 0.00 0.00 0.00 3.46
1331 3711 8.360390 AGGTGTCATTTTCTCCTTGTATTTTTC 58.640 33.333 0.00 0.00 0.00 2.29
1332 3712 8.250143 AGGTGTCATTTTCTCCTTGTATTTTT 57.750 30.769 0.00 0.00 0.00 1.94
1355 3739 2.169832 TCTCGGTTGAGCAGAAAAGG 57.830 50.000 0.00 0.00 42.26 3.11
1367 3751 7.642082 AATTCTGTACTAGTGTATCTCGGTT 57.358 36.000 5.39 0.00 0.00 4.44
1368 3752 8.743085 TTAATTCTGTACTAGTGTATCTCGGT 57.257 34.615 5.39 0.00 0.00 4.69
1369 3753 9.828852 GATTAATTCTGTACTAGTGTATCTCGG 57.171 37.037 5.39 0.00 0.00 4.63
1382 3766 8.184848 GGGCAGAAAGAAAGATTAATTCTGTAC 58.815 37.037 13.45 8.21 45.43 2.90
1383 3767 7.888021 TGGGCAGAAAGAAAGATTAATTCTGTA 59.112 33.333 13.45 1.42 45.43 2.74
1384 3768 6.721208 TGGGCAGAAAGAAAGATTAATTCTGT 59.279 34.615 13.45 0.00 45.43 3.41
1403 3839 2.034179 TCGTATCGTATCTGTTGGGCAG 59.966 50.000 0.00 0.00 46.34 4.85
1404 3840 2.025898 TCGTATCGTATCTGTTGGGCA 58.974 47.619 0.00 0.00 0.00 5.36
1405 3841 2.787601 TCGTATCGTATCTGTTGGGC 57.212 50.000 0.00 0.00 0.00 5.36
1406 3842 5.048921 AGTGTATCGTATCGTATCTGTTGGG 60.049 44.000 0.00 0.00 0.00 4.12
1407 3843 5.851703 CAGTGTATCGTATCGTATCTGTTGG 59.148 44.000 0.00 0.00 0.00 3.77
1408 3844 5.851703 CCAGTGTATCGTATCGTATCTGTTG 59.148 44.000 0.00 0.00 0.00 3.33
1409 3845 5.530171 ACCAGTGTATCGTATCGTATCTGTT 59.470 40.000 0.00 0.00 0.00 3.16
1410 3846 5.061853 ACCAGTGTATCGTATCGTATCTGT 58.938 41.667 0.00 0.00 0.00 3.41
1411 3847 5.608676 ACCAGTGTATCGTATCGTATCTG 57.391 43.478 0.00 0.00 0.00 2.90
1412 3848 5.641209 GGTACCAGTGTATCGTATCGTATCT 59.359 44.000 7.15 0.00 0.00 1.98
1413 3849 5.409520 TGGTACCAGTGTATCGTATCGTATC 59.590 44.000 11.60 0.00 30.15 2.24
1414 3850 5.308014 TGGTACCAGTGTATCGTATCGTAT 58.692 41.667 11.60 0.00 30.15 3.06
1415 3851 4.702831 TGGTACCAGTGTATCGTATCGTA 58.297 43.478 11.60 0.00 30.15 3.43
1416 3852 3.544684 TGGTACCAGTGTATCGTATCGT 58.455 45.455 11.60 0.00 30.15 3.73
1417 3853 4.556942 TTGGTACCAGTGTATCGTATCG 57.443 45.455 15.65 0.00 30.15 2.92
1418 3854 5.839621 ACATTGGTACCAGTGTATCGTATC 58.160 41.667 34.37 0.00 43.43 2.24
1419 3855 5.361571 TGACATTGGTACCAGTGTATCGTAT 59.638 40.000 35.04 16.63 44.86 3.06
1420 3856 4.705991 TGACATTGGTACCAGTGTATCGTA 59.294 41.667 35.04 19.65 44.86 3.43
1421 3857 3.512329 TGACATTGGTACCAGTGTATCGT 59.488 43.478 35.04 17.95 44.86 3.73
1422 3858 3.863424 GTGACATTGGTACCAGTGTATCG 59.137 47.826 35.04 15.03 44.86 2.92
1423 3859 4.081087 AGGTGACATTGGTACCAGTGTATC 60.081 45.833 35.04 28.53 44.86 2.24
1424 3860 3.844211 AGGTGACATTGGTACCAGTGTAT 59.156 43.478 35.04 21.52 44.86 2.29
1425 3861 3.244582 AGGTGACATTGGTACCAGTGTA 58.755 45.455 35.04 22.73 44.86 2.90
1426 3862 2.038557 GAGGTGACATTGGTACCAGTGT 59.961 50.000 35.41 35.41 46.92 3.55
1427 3863 2.038426 TGAGGTGACATTGGTACCAGTG 59.962 50.000 30.02 30.02 39.19 3.66
1428 3864 2.038557 GTGAGGTGACATTGGTACCAGT 59.961 50.000 15.65 9.80 36.94 4.00
1429 3865 2.615493 GGTGAGGTGACATTGGTACCAG 60.615 54.545 15.65 7.18 36.94 4.00
1430 3866 1.349688 GGTGAGGTGACATTGGTACCA 59.650 52.381 11.60 11.60 36.94 3.25
1431 3867 1.628846 AGGTGAGGTGACATTGGTACC 59.371 52.381 4.43 4.43 34.68 3.34
1435 3871 0.391661 CCGAGGTGAGGTGACATTGG 60.392 60.000 0.00 0.00 0.00 3.16
1443 3879 2.925170 AAGCTGCCGAGGTGAGGT 60.925 61.111 0.00 0.00 0.00 3.85
1448 3884 2.359230 GCTTCAAGCTGCCGAGGT 60.359 61.111 0.71 0.00 38.45 3.85
1457 3893 7.823149 AAATACAATCAATCAAGCTTCAAGC 57.177 32.000 0.00 0.00 42.84 4.01
1460 3896 9.412460 AGGATAAATACAATCAATCAAGCTTCA 57.588 29.630 0.00 0.00 0.00 3.02
1461 3897 9.890352 GAGGATAAATACAATCAATCAAGCTTC 57.110 33.333 0.00 0.00 0.00 3.86
1462 3898 8.854117 GGAGGATAAATACAATCAATCAAGCTT 58.146 33.333 0.00 0.00 0.00 3.74
1463 3899 8.223330 AGGAGGATAAATACAATCAATCAAGCT 58.777 33.333 0.00 0.00 0.00 3.74
1464 3900 8.401490 AGGAGGATAAATACAATCAATCAAGC 57.599 34.615 0.00 0.00 0.00 4.01
1492 3928 5.270893 TGATCCGGTCGAGATATGAAAAA 57.729 39.130 0.00 0.00 0.00 1.94
1493 3929 4.796290 GCTGATCCGGTCGAGATATGAAAA 60.796 45.833 0.00 0.00 0.00 2.29
1494 3930 3.305403 GCTGATCCGGTCGAGATATGAAA 60.305 47.826 0.00 0.00 0.00 2.69
1495 3931 2.229062 GCTGATCCGGTCGAGATATGAA 59.771 50.000 0.00 0.00 0.00 2.57
1496 3932 1.813178 GCTGATCCGGTCGAGATATGA 59.187 52.381 0.00 0.00 0.00 2.15
1497 3933 1.541588 TGCTGATCCGGTCGAGATATG 59.458 52.381 0.00 0.00 0.00 1.78
1498 3934 1.815613 CTGCTGATCCGGTCGAGATAT 59.184 52.381 0.00 0.00 0.00 1.63
1499 3935 1.239347 CTGCTGATCCGGTCGAGATA 58.761 55.000 0.00 0.00 0.00 1.98
1500 3936 2.037053 CTGCTGATCCGGTCGAGAT 58.963 57.895 0.00 0.00 0.00 2.75
1501 3937 2.775856 GCTGCTGATCCGGTCGAGA 61.776 63.158 0.00 0.00 0.00 4.04
1502 3938 2.279120 GCTGCTGATCCGGTCGAG 60.279 66.667 0.00 0.00 0.00 4.04
1503 3939 2.166130 TTTGCTGCTGATCCGGTCGA 62.166 55.000 0.00 0.00 0.00 4.20
1504 3940 1.298157 TTTTGCTGCTGATCCGGTCG 61.298 55.000 0.00 0.00 0.00 4.79
1505 3941 1.098050 ATTTTGCTGCTGATCCGGTC 58.902 50.000 0.00 0.00 0.00 4.79
1506 3942 1.549203 AATTTTGCTGCTGATCCGGT 58.451 45.000 0.00 0.00 0.00 5.28
1507 3943 3.996150 ATAATTTTGCTGCTGATCCGG 57.004 42.857 0.00 0.00 0.00 5.14
1508 3944 5.008019 ACTGTATAATTTTGCTGCTGATCCG 59.992 40.000 0.00 0.00 0.00 4.18
1509 3945 6.382869 ACTGTATAATTTTGCTGCTGATCC 57.617 37.500 0.00 0.00 0.00 3.36
1510 3946 7.041508 AGCTACTGTATAATTTTGCTGCTGATC 60.042 37.037 0.00 0.00 0.00 2.92
1525 3961 6.265649 GGGAAGAGTCAATCAGCTACTGTATA 59.734 42.308 0.00 0.00 32.61 1.47
1526 3962 5.069781 GGGAAGAGTCAATCAGCTACTGTAT 59.930 44.000 0.00 0.00 32.61 2.29
1530 3966 2.769095 GGGGAAGAGTCAATCAGCTACT 59.231 50.000 0.00 0.00 0.00 2.57
1531 3967 2.501723 TGGGGAAGAGTCAATCAGCTAC 59.498 50.000 0.00 0.00 0.00 3.58
1532 3968 2.832838 TGGGGAAGAGTCAATCAGCTA 58.167 47.619 0.00 0.00 0.00 3.32
1533 3969 1.661463 TGGGGAAGAGTCAATCAGCT 58.339 50.000 0.00 0.00 0.00 4.24
1535 3971 4.157289 CACAATTGGGGAAGAGTCAATCAG 59.843 45.833 10.83 0.00 31.56 2.90
1536 3972 4.081406 CACAATTGGGGAAGAGTCAATCA 58.919 43.478 10.83 0.00 31.56 2.57
1537 3973 4.082125 ACACAATTGGGGAAGAGTCAATC 58.918 43.478 13.35 0.00 31.56 2.67
1538 3974 4.118168 ACACAATTGGGGAAGAGTCAAT 57.882 40.909 13.35 0.00 33.12 2.57
1539 3975 3.593442 ACACAATTGGGGAAGAGTCAA 57.407 42.857 13.35 0.00 0.00 3.18
1540 3976 3.593442 AACACAATTGGGGAAGAGTCA 57.407 42.857 13.35 0.00 0.00 3.41
1541 3977 4.022849 CAGAAACACAATTGGGGAAGAGTC 60.023 45.833 13.35 0.00 0.00 3.36
1542 3978 3.891366 CAGAAACACAATTGGGGAAGAGT 59.109 43.478 13.35 0.00 0.00 3.24
1543 3979 3.305608 GCAGAAACACAATTGGGGAAGAG 60.306 47.826 13.35 0.00 0.00 2.85
1544 3980 2.627699 GCAGAAACACAATTGGGGAAGA 59.372 45.455 13.35 0.00 0.00 2.87
1545 3981 2.364970 TGCAGAAACACAATTGGGGAAG 59.635 45.455 13.35 0.00 0.00 3.46
1558 3994 6.533367 TGTAAACAGGAACAAAATGCAGAAAC 59.467 34.615 0.00 0.00 0.00 2.78
1611 4050 1.593750 AAGATGGATGCTCGCGCTC 60.594 57.895 5.56 0.00 36.97 5.03
1612 4051 1.886313 CAAGATGGATGCTCGCGCT 60.886 57.895 5.56 0.00 36.97 5.92
1613 4052 2.176273 ACAAGATGGATGCTCGCGC 61.176 57.895 0.00 0.00 0.00 6.86
1614 4053 0.807275 TCACAAGATGGATGCTCGCG 60.807 55.000 0.00 0.00 0.00 5.87
1615 4054 1.372582 TTCACAAGATGGATGCTCGC 58.627 50.000 0.00 0.00 0.00 5.03
1616 4055 4.627611 AATTTCACAAGATGGATGCTCG 57.372 40.909 0.00 0.00 0.00 5.03
1621 4060 5.185454 TGCGAGTAATTTCACAAGATGGAT 58.815 37.500 0.00 0.00 0.00 3.41
1625 4064 5.877012 AGTGATGCGAGTAATTTCACAAGAT 59.123 36.000 6.88 0.00 39.27 2.40
1628 4067 4.994217 TGAGTGATGCGAGTAATTTCACAA 59.006 37.500 6.88 0.00 39.27 3.33
1633 4075 3.937814 TGGTGAGTGATGCGAGTAATTT 58.062 40.909 0.00 0.00 0.00 1.82
1637 4079 1.136891 CCATGGTGAGTGATGCGAGTA 59.863 52.381 2.57 0.00 0.00 2.59
1641 4083 1.224075 GATCCATGGTGAGTGATGCG 58.776 55.000 12.58 0.00 0.00 4.73
1645 4087 3.387050 CAGAGATGATCCATGGTGAGTGA 59.613 47.826 12.58 0.00 0.00 3.41
1646 4088 3.387050 TCAGAGATGATCCATGGTGAGTG 59.613 47.826 12.58 0.45 0.00 3.51
1647 4089 3.650948 TCAGAGATGATCCATGGTGAGT 58.349 45.455 12.58 0.00 0.00 3.41
1648 4090 4.893829 ATCAGAGATGATCCATGGTGAG 57.106 45.455 12.58 0.00 0.00 3.51
1649 4091 5.641789 AAATCAGAGATGATCCATGGTGA 57.358 39.130 12.58 5.73 0.00 4.02
1650 4092 7.575155 GCAATAAATCAGAGATGATCCATGGTG 60.575 40.741 12.58 0.00 0.00 4.17
1651 4093 6.433404 GCAATAAATCAGAGATGATCCATGGT 59.567 38.462 12.58 0.00 0.00 3.55
1652 4094 6.127703 GGCAATAAATCAGAGATGATCCATGG 60.128 42.308 4.97 4.97 0.00 3.66
1653 4095 6.403309 CGGCAATAAATCAGAGATGATCCATG 60.403 42.308 0.00 0.00 0.00 3.66
1654 4096 5.646793 CGGCAATAAATCAGAGATGATCCAT 59.353 40.000 0.00 0.00 0.00 3.41
1655 4097 4.999311 CGGCAATAAATCAGAGATGATCCA 59.001 41.667 0.00 0.00 0.00 3.41
1656 4098 4.142730 GCGGCAATAAATCAGAGATGATCC 60.143 45.833 0.00 0.00 0.00 3.36
1657 4099 4.453478 TGCGGCAATAAATCAGAGATGATC 59.547 41.667 0.00 0.00 0.00 2.92
1658 4100 4.392047 TGCGGCAATAAATCAGAGATGAT 58.608 39.130 0.00 0.00 0.00 2.45
1659 4101 3.807553 TGCGGCAATAAATCAGAGATGA 58.192 40.909 0.00 0.00 0.00 2.92
1660 4102 3.058432 CCTGCGGCAATAAATCAGAGATG 60.058 47.826 3.44 0.00 0.00 2.90
1661 4103 3.144506 CCTGCGGCAATAAATCAGAGAT 58.855 45.455 3.44 0.00 0.00 2.75
1662 4104 2.092968 ACCTGCGGCAATAAATCAGAGA 60.093 45.455 3.44 0.00 0.00 3.10
1663 4105 2.289002 GACCTGCGGCAATAAATCAGAG 59.711 50.000 3.44 0.00 0.00 3.35
1664 4106 2.288666 GACCTGCGGCAATAAATCAGA 58.711 47.619 3.44 0.00 0.00 3.27
1665 4107 1.334869 GGACCTGCGGCAATAAATCAG 59.665 52.381 3.44 0.00 0.00 2.90
1666 4108 1.064758 AGGACCTGCGGCAATAAATCA 60.065 47.619 3.44 0.00 0.00 2.57
1667 4109 1.604278 GAGGACCTGCGGCAATAAATC 59.396 52.381 3.44 0.00 0.00 2.17
1668 4110 1.680338 GAGGACCTGCGGCAATAAAT 58.320 50.000 3.44 0.00 0.00 1.40
1669 4111 0.393808 GGAGGACCTGCGGCAATAAA 60.394 55.000 3.44 0.00 0.00 1.40
1670 4112 1.223487 GGAGGACCTGCGGCAATAA 59.777 57.895 3.44 0.00 0.00 1.40
1671 4113 2.742116 GGGAGGACCTGCGGCAATA 61.742 63.158 6.95 0.00 35.85 1.90
1672 4114 4.115199 GGGAGGACCTGCGGCAAT 62.115 66.667 6.95 0.00 35.85 3.56
1676 4118 3.787001 GAAGGGGAGGACCTGCGG 61.787 72.222 6.95 0.00 40.87 5.69
1677 4119 3.787001 GGAAGGGGAGGACCTGCG 61.787 72.222 6.95 0.00 40.87 5.18
1678 4120 2.285743 AGGAAGGGGAGGACCTGC 60.286 66.667 4.00 4.00 40.87 4.85
1679 4121 0.980231 CAGAGGAAGGGGAGGACCTG 60.980 65.000 0.00 0.00 40.87 4.00
1680 4122 1.394151 CAGAGGAAGGGGAGGACCT 59.606 63.158 0.00 0.00 44.56 3.85
1681 4123 2.371259 GCAGAGGAAGGGGAGGACC 61.371 68.421 0.00 0.00 39.11 4.46
1682 4124 2.726351 CGCAGAGGAAGGGGAGGAC 61.726 68.421 0.00 0.00 0.00 3.85
1683 4125 2.364317 CGCAGAGGAAGGGGAGGA 60.364 66.667 0.00 0.00 0.00 3.71
1684 4126 4.168291 GCGCAGAGGAAGGGGAGG 62.168 72.222 0.30 0.00 0.00 4.30
1685 4127 4.168291 GGCGCAGAGGAAGGGGAG 62.168 72.222 10.83 0.00 0.00 4.30
1688 4130 4.821589 GACGGCGCAGAGGAAGGG 62.822 72.222 16.26 0.00 0.00 3.95
1689 4131 4.821589 GGACGGCGCAGAGGAAGG 62.822 72.222 16.26 0.00 0.00 3.46
1690 4132 3.708220 GAGGACGGCGCAGAGGAAG 62.708 68.421 16.26 0.00 0.00 3.46
1691 4133 3.760035 GAGGACGGCGCAGAGGAA 61.760 66.667 16.26 0.00 0.00 3.36
1960 4405 0.773644 AGTGGCTGGTGAGGTTGAAT 59.226 50.000 0.00 0.00 0.00 2.57
2030 4475 3.717294 GATGACCGGCCACTGGGT 61.717 66.667 0.00 0.31 39.83 4.51
2401 4852 3.068064 TCCTCGATGCGCACCTGA 61.068 61.111 14.90 10.32 0.00 3.86
3110 5804 8.569641 GCTGTATACTACATAGTTGAGCTACTT 58.430 37.037 4.17 0.00 38.15 2.24
3247 9093 2.105821 TGAAACAGTAAGGGACCCACAG 59.894 50.000 14.60 2.34 0.00 3.66
3255 9101 8.041323 ACTCTGTATGTATTGAAACAGTAAGGG 58.959 37.037 0.00 0.00 40.18 3.95
3256 9109 9.436957 AACTCTGTATGTATTGAAACAGTAAGG 57.563 33.333 0.00 0.00 40.18 2.69
3283 9136 9.801714 GCAACAAAATGACAATTCTGAATTTAG 57.198 29.630 12.74 5.99 0.00 1.85
3358 9211 3.568538 GGATAATGCGGCAATAAAGCAG 58.431 45.455 6.82 0.00 44.55 4.24
3359 9212 2.031245 CGGATAATGCGGCAATAAAGCA 60.031 45.455 6.82 0.00 45.46 3.91
3360 9213 2.225491 TCGGATAATGCGGCAATAAAGC 59.775 45.455 6.82 0.00 0.00 3.51
3361 9214 4.685169 ATCGGATAATGCGGCAATAAAG 57.315 40.909 6.82 0.00 0.00 1.85
3365 12403 4.621068 CATTATCGGATAATGCGGCAAT 57.379 40.909 28.28 0.00 43.74 3.56
3379 12417 5.657470 TGCTTCCGATCTTTTCATTATCG 57.343 39.130 0.00 0.00 41.59 2.92
3386 12424 6.528072 CACCTTTTATTGCTTCCGATCTTTTC 59.472 38.462 0.00 0.00 0.00 2.29
3391 12429 5.332707 GTTCACCTTTTATTGCTTCCGATC 58.667 41.667 0.00 0.00 0.00 3.69
3395 12433 4.864704 TGGTTCACCTTTTATTGCTTCC 57.135 40.909 0.00 0.00 36.82 3.46
3417 12455 4.471747 AGTTTGGTATGGTTGGTGGTTTTT 59.528 37.500 0.00 0.00 0.00 1.94
3419 12457 3.639561 GAGTTTGGTATGGTTGGTGGTTT 59.360 43.478 0.00 0.00 0.00 3.27
3426 12464 2.081462 GGTCGGAGTTTGGTATGGTTG 58.919 52.381 0.00 0.00 0.00 3.77
3452 12490 8.798748 ATATAAATCATAAGTATAGCGGTCGC 57.201 34.615 7.32 7.32 42.33 5.19
3483 12521 9.181805 GAGGTTTATTTGCTTACTCTTTTGAAC 57.818 33.333 0.00 0.00 0.00 3.18
3484 12522 9.131791 AGAGGTTTATTTGCTTACTCTTTTGAA 57.868 29.630 0.00 0.00 30.25 2.69
3545 12593 8.873830 CGGTATAAATTGTGGCTCTTGATATAG 58.126 37.037 0.00 0.00 0.00 1.31
3557 12606 6.978343 TTGACTCTTCGGTATAAATTGTGG 57.022 37.500 0.00 0.00 0.00 4.17
3590 12639 9.389755 TGAGTTGTGCTGCATATATAAAGTTTA 57.610 29.630 5.27 0.00 0.00 2.01
3882 17038 3.800826 GGCCTCACGGTCCATAATT 57.199 52.632 0.00 0.00 0.00 1.40
3974 17231 2.284417 GGCGTTCGACCAGCTTAAATAG 59.716 50.000 6.02 0.00 0.00 1.73
4025 17291 1.488705 TTCCCCGACAGGAAGCACAT 61.489 55.000 0.00 0.00 41.08 3.21
4038 17304 2.190578 GCTCCACCTCATTCCCCG 59.809 66.667 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.