Multiple sequence alignment - TraesCS7D01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G016100 chr7D 100.000 4305 0 0 1 4305 7076075 7071771 0.000000e+00 7950.0
1 TraesCS7D01G016100 chr7D 86.885 1220 104 24 3121 4305 6967242 6966044 0.000000e+00 1315.0
2 TraesCS7D01G016100 chr7D 82.330 1013 102 40 3119 4097 7193493 7194462 0.000000e+00 808.0
3 TraesCS7D01G016100 chr7D 76.884 199 30 4 4123 4305 7194460 7194658 9.850000e-17 99.0
4 TraesCS7D01G016100 chr7A 94.713 2610 112 13 1638 4224 7914892 7912286 0.000000e+00 4032.0
5 TraesCS7D01G016100 chr7A 86.957 1196 109 26 3121 4305 7908994 7907835 0.000000e+00 1301.0
6 TraesCS7D01G016100 chr7A 94.727 512 20 4 990 1501 7915539 7915035 0.000000e+00 789.0
7 TraesCS7D01G016100 chr7A 87.282 574 55 6 3538 4097 8120531 8121100 1.310000e-179 640.0
8 TraesCS7D01G016100 chr7A 80.475 589 86 17 3647 4216 7792617 7792039 1.430000e-114 424.0
9 TraesCS7D01G016100 chr7A 85.017 287 34 7 3054 3332 8077781 8078066 2.530000e-72 283.0
10 TraesCS7D01G016100 chr7A 85.017 287 34 7 3054 3332 8198047 8198332 2.530000e-72 283.0
11 TraesCS7D01G016100 chr7A 94.340 106 5 1 1531 1635 7915035 7914930 1.240000e-35 161.0
12 TraesCS7D01G016100 chrUn 94.293 1875 83 9 2332 4194 51204648 51206510 0.000000e+00 2848.0
13 TraesCS7D01G016100 chrUn 84.662 991 118 15 3122 4097 51219908 51220879 0.000000e+00 957.0
14 TraesCS7D01G016100 chrUn 93.299 582 27 5 1784 2361 51204036 51204609 0.000000e+00 848.0
15 TraesCS7D01G016100 chrUn 84.068 703 67 23 230 915 51202361 51203035 1.690000e-178 636.0
16 TraesCS7D01G016100 chrUn 88.403 526 17 11 938 1419 51203092 51203617 1.030000e-165 593.0
17 TraesCS7D01G016100 chrUn 81.266 379 52 11 2973 3344 51230218 51229852 5.450000e-74 289.0
18 TraesCS7D01G016100 chrUn 81.266 379 52 11 2973 3344 289098589 289098955 5.450000e-74 289.0
19 TraesCS7D01G016100 chrUn 84.231 260 26 9 1532 1780 51203743 51203998 5.560000e-59 239.0
20 TraesCS7D01G016100 chrUn 90.323 62 6 0 4241 4302 51206571 51206632 9.920000e-12 82.4
21 TraesCS7D01G016100 chrUn 84.615 65 10 0 4241 4305 34119196 34119132 9.990000e-07 65.8
22 TraesCS7D01G016100 chr4A 92.423 937 45 8 3300 4228 732977556 732976638 0.000000e+00 1314.0
23 TraesCS7D01G016100 chr4A 84.789 1019 97 24 3222 4224 733058537 733059513 0.000000e+00 970.0
24 TraesCS7D01G016100 chr4A 84.843 1016 96 22 3222 4221 733240547 733241520 0.000000e+00 970.0
25 TraesCS7D01G016100 chr4A 84.691 1019 98 24 3222 4224 733118350 733119326 0.000000e+00 965.0
26 TraesCS7D01G016100 chr4A 92.475 598 27 3 3604 4194 732976044 732975458 0.000000e+00 839.0
27 TraesCS7D01G016100 chr4A 94.611 334 18 0 2947 3280 732978584 732978251 6.380000e-143 518.0
28 TraesCS7D01G016100 chr4A 75.500 200 31 9 4123 4305 732480332 732480530 9.920000e-12 82.4
29 TraesCS7D01G016100 chr1D 92.771 83 5 1 1231 1313 268705077 268705158 7.560000e-23 119.0
30 TraesCS7D01G016100 chr1B 92.771 83 5 1 1231 1313 370731402 370731321 7.560000e-23 119.0
31 TraesCS7D01G016100 chr1A 92.593 81 5 1 1231 1311 334205131 334205052 9.780000e-22 115.0
32 TraesCS7D01G016100 chr5B 83.099 71 12 0 4235 4305 526875864 526875934 9.990000e-07 65.8
33 TraesCS7D01G016100 chr4B 84.615 65 10 0 4241 4305 555285178 555285114 9.990000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G016100 chr7D 7071771 7076075 4304 True 7950.000000 7950 100.000000 1 4305 1 chr7D.!!$R2 4304
1 TraesCS7D01G016100 chr7D 6966044 6967242 1198 True 1315.000000 1315 86.885000 3121 4305 1 chr7D.!!$R1 1184
2 TraesCS7D01G016100 chr7D 7193493 7194658 1165 False 453.500000 808 79.607000 3119 4305 2 chr7D.!!$F1 1186
3 TraesCS7D01G016100 chr7A 7907835 7915539 7704 True 1570.750000 4032 92.684250 990 4305 4 chr7A.!!$R2 3315
4 TraesCS7D01G016100 chr7A 8120531 8121100 569 False 640.000000 640 87.282000 3538 4097 1 chr7A.!!$F2 559
5 TraesCS7D01G016100 chr7A 7792039 7792617 578 True 424.000000 424 80.475000 3647 4216 1 chr7A.!!$R1 569
6 TraesCS7D01G016100 chrUn 51219908 51220879 971 False 957.000000 957 84.662000 3122 4097 1 chrUn.!!$F1 975
7 TraesCS7D01G016100 chrUn 51202361 51206632 4271 False 874.400000 2848 89.102833 230 4302 6 chrUn.!!$F3 4072
8 TraesCS7D01G016100 chr4A 733058537 733059513 976 False 970.000000 970 84.789000 3222 4224 1 chr4A.!!$F2 1002
9 TraesCS7D01G016100 chr4A 733240547 733241520 973 False 970.000000 970 84.843000 3222 4221 1 chr4A.!!$F4 999
10 TraesCS7D01G016100 chr4A 733118350 733119326 976 False 965.000000 965 84.691000 3222 4224 1 chr4A.!!$F3 1002
11 TraesCS7D01G016100 chr4A 732975458 732978584 3126 True 890.333333 1314 93.169667 2947 4228 3 chr4A.!!$R1 1281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.035056 AAGAAAGAGATGCACCGGGG 60.035 55.0 6.32 0.84 0.0 5.73 F
627 629 0.170339 GGCGACAGTTTTACATGGCC 59.830 55.0 0.00 0.00 0.0 5.36 F
1449 1580 0.323178 TCTCGGTACAGTCTGTCCCC 60.323 60.0 9.26 9.92 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1811 1.202533 AGACTGACACTTGTTCCACCG 60.203 52.381 0.00 0.00 0.00 4.94 R
1838 2055 2.159170 GCCGATCAATAGCTAGGCCTAG 60.159 54.545 32.12 32.12 38.72 3.02 R
3423 4416 0.514691 GCAGCTTCCAGTTCTTGACG 59.485 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.749996 ATCTATCTATCTATCTCTTCCTCCTCT 57.250 37.037 0.00 0.00 0.00 3.69
50 51 9.213777 TCTATCTATCTATCTCTTCCTCCTCTC 57.786 40.741 0.00 0.00 0.00 3.20
51 52 9.218525 CTATCTATCTATCTCTTCCTCCTCTCT 57.781 40.741 0.00 0.00 0.00 3.10
52 53 7.496346 TCTATCTATCTCTTCCTCCTCTCTC 57.504 44.000 0.00 0.00 0.00 3.20
53 54 7.256399 TCTATCTATCTCTTCCTCCTCTCTCT 58.744 42.308 0.00 0.00 0.00 3.10
54 55 5.825593 TCTATCTCTTCCTCCTCTCTCTC 57.174 47.826 0.00 0.00 0.00 3.20
55 56 5.476983 TCTATCTCTTCCTCCTCTCTCTCT 58.523 45.833 0.00 0.00 0.00 3.10
56 57 3.931907 TCTCTTCCTCCTCTCTCTCTG 57.068 52.381 0.00 0.00 0.00 3.35
57 58 2.509548 TCTCTTCCTCCTCTCTCTCTGG 59.490 54.545 0.00 0.00 0.00 3.86
58 59 2.242196 CTCTTCCTCCTCTCTCTCTGGT 59.758 54.545 0.00 0.00 0.00 4.00
59 60 2.652348 TCTTCCTCCTCTCTCTCTGGTT 59.348 50.000 0.00 0.00 0.00 3.67
60 61 2.523325 TCCTCCTCTCTCTCTGGTTG 57.477 55.000 0.00 0.00 0.00 3.77
61 62 1.996291 TCCTCCTCTCTCTCTGGTTGA 59.004 52.381 0.00 0.00 0.00 3.18
62 63 2.380249 TCCTCCTCTCTCTCTGGTTGAA 59.620 50.000 0.00 0.00 0.00 2.69
63 64 3.169099 CCTCCTCTCTCTCTGGTTGAAA 58.831 50.000 0.00 0.00 0.00 2.69
64 65 3.580458 CCTCCTCTCTCTCTGGTTGAAAA 59.420 47.826 0.00 0.00 0.00 2.29
77 78 1.850377 TTGAAAACAGTTGCCGCATG 58.150 45.000 0.00 0.00 0.00 4.06
78 79 1.028130 TGAAAACAGTTGCCGCATGA 58.972 45.000 0.00 0.00 0.00 3.07
79 80 1.268999 TGAAAACAGTTGCCGCATGAC 60.269 47.619 0.00 0.00 0.00 3.06
80 81 0.743688 AAAACAGTTGCCGCATGACA 59.256 45.000 0.00 0.00 0.00 3.58
81 82 0.961019 AAACAGTTGCCGCATGACAT 59.039 45.000 0.00 0.00 0.00 3.06
82 83 0.241749 AACAGTTGCCGCATGACATG 59.758 50.000 11.27 11.27 0.00 3.21
83 84 0.606130 ACAGTTGCCGCATGACATGA 60.606 50.000 19.76 0.00 0.00 3.07
84 85 0.179181 CAGTTGCCGCATGACATGAC 60.179 55.000 19.76 7.77 0.00 3.06
85 86 0.321919 AGTTGCCGCATGACATGACT 60.322 50.000 19.76 9.95 0.00 3.41
86 87 0.179181 GTTGCCGCATGACATGACTG 60.179 55.000 19.76 7.59 0.00 3.51
87 88 1.925415 TTGCCGCATGACATGACTGC 61.925 55.000 19.76 16.32 0.00 4.40
90 91 2.406401 GCATGACATGACTGCGGC 59.594 61.111 19.76 0.00 0.00 6.53
91 92 3.104766 CATGACATGACTGCGGCC 58.895 61.111 10.03 0.00 0.00 6.13
92 93 1.450848 CATGACATGACTGCGGCCT 60.451 57.895 10.03 0.00 0.00 5.19
93 94 1.153289 ATGACATGACTGCGGCCTC 60.153 57.895 0.00 0.00 0.00 4.70
94 95 1.620739 ATGACATGACTGCGGCCTCT 61.621 55.000 0.00 0.00 0.00 3.69
95 96 1.812922 GACATGACTGCGGCCTCTG 60.813 63.158 0.00 0.00 0.00 3.35
96 97 2.267006 CATGACTGCGGCCTCTGT 59.733 61.111 4.77 4.77 0.00 3.41
97 98 1.812922 CATGACTGCGGCCTCTGTC 60.813 63.158 21.98 21.98 36.05 3.51
98 99 2.285773 ATGACTGCGGCCTCTGTCA 61.286 57.895 30.04 30.04 44.85 3.58
99 100 1.830587 ATGACTGCGGCCTCTGTCAA 61.831 55.000 31.09 18.68 44.27 3.18
100 101 1.301716 GACTGCGGCCTCTGTCAAA 60.302 57.895 23.33 0.00 35.72 2.69
101 102 0.884704 GACTGCGGCCTCTGTCAAAA 60.885 55.000 23.33 0.00 35.72 2.44
102 103 0.250901 ACTGCGGCCTCTGTCAAAAT 60.251 50.000 0.00 0.00 0.00 1.82
103 104 0.449388 CTGCGGCCTCTGTCAAAATC 59.551 55.000 0.00 0.00 0.00 2.17
104 105 0.250684 TGCGGCCTCTGTCAAAATCA 60.251 50.000 0.00 0.00 0.00 2.57
105 106 1.098050 GCGGCCTCTGTCAAAATCAT 58.902 50.000 0.00 0.00 0.00 2.45
106 107 1.064654 GCGGCCTCTGTCAAAATCATC 59.935 52.381 0.00 0.00 0.00 2.92
107 108 1.672881 CGGCCTCTGTCAAAATCATCC 59.327 52.381 0.00 0.00 0.00 3.51
108 109 2.027385 GGCCTCTGTCAAAATCATCCC 58.973 52.381 0.00 0.00 0.00 3.85
109 110 2.357569 GGCCTCTGTCAAAATCATCCCT 60.358 50.000 0.00 0.00 0.00 4.20
110 111 2.948315 GCCTCTGTCAAAATCATCCCTC 59.052 50.000 0.00 0.00 0.00 4.30
111 112 3.201290 CCTCTGTCAAAATCATCCCTCG 58.799 50.000 0.00 0.00 0.00 4.63
112 113 2.611292 CTCTGTCAAAATCATCCCTCGC 59.389 50.000 0.00 0.00 0.00 5.03
113 114 2.027285 TCTGTCAAAATCATCCCTCGCA 60.027 45.455 0.00 0.00 0.00 5.10
114 115 2.083774 TGTCAAAATCATCCCTCGCAC 58.916 47.619 0.00 0.00 0.00 5.34
115 116 1.401905 GTCAAAATCATCCCTCGCACC 59.598 52.381 0.00 0.00 0.00 5.01
116 117 0.740737 CAAAATCATCCCTCGCACCC 59.259 55.000 0.00 0.00 0.00 4.61
117 118 0.395724 AAAATCATCCCTCGCACCCC 60.396 55.000 0.00 0.00 0.00 4.95
118 119 2.284515 AAATCATCCCTCGCACCCCC 62.285 60.000 0.00 0.00 0.00 5.40
119 120 3.721172 ATCATCCCTCGCACCCCCT 62.721 63.158 0.00 0.00 0.00 4.79
120 121 3.866582 CATCCCTCGCACCCCCTC 61.867 72.222 0.00 0.00 0.00 4.30
121 122 4.095400 ATCCCTCGCACCCCCTCT 62.095 66.667 0.00 0.00 0.00 3.69
122 123 4.779733 TCCCTCGCACCCCCTCTC 62.780 72.222 0.00 0.00 0.00 3.20
126 127 4.649705 TCGCACCCCCTCTCCCAA 62.650 66.667 0.00 0.00 0.00 4.12
127 128 4.410400 CGCACCCCCTCTCCCAAC 62.410 72.222 0.00 0.00 0.00 3.77
128 129 2.936032 GCACCCCCTCTCCCAACT 60.936 66.667 0.00 0.00 0.00 3.16
129 130 2.972819 GCACCCCCTCTCCCAACTC 61.973 68.421 0.00 0.00 0.00 3.01
130 131 2.125225 ACCCCCTCTCCCAACTCC 59.875 66.667 0.00 0.00 0.00 3.85
131 132 2.124996 CCCCCTCTCCCAACTCCA 59.875 66.667 0.00 0.00 0.00 3.86
132 133 2.301738 CCCCCTCTCCCAACTCCAC 61.302 68.421 0.00 0.00 0.00 4.02
133 134 1.538876 CCCCTCTCCCAACTCCACA 60.539 63.158 0.00 0.00 0.00 4.17
134 135 1.133809 CCCCTCTCCCAACTCCACAA 61.134 60.000 0.00 0.00 0.00 3.33
135 136 0.326264 CCCTCTCCCAACTCCACAAG 59.674 60.000 0.00 0.00 0.00 3.16
136 137 0.322008 CCTCTCCCAACTCCACAAGC 60.322 60.000 0.00 0.00 0.00 4.01
137 138 0.397941 CTCTCCCAACTCCACAAGCA 59.602 55.000 0.00 0.00 0.00 3.91
138 139 1.004044 CTCTCCCAACTCCACAAGCAT 59.996 52.381 0.00 0.00 0.00 3.79
139 140 1.171308 CTCCCAACTCCACAAGCATG 58.829 55.000 0.00 0.00 0.00 4.06
140 141 0.895100 TCCCAACTCCACAAGCATGC 60.895 55.000 10.51 10.51 0.00 4.06
141 142 1.588082 CCAACTCCACAAGCATGCC 59.412 57.895 15.66 0.00 0.00 4.40
142 143 1.180456 CCAACTCCACAAGCATGCCA 61.180 55.000 15.66 0.00 0.00 4.92
143 144 0.038892 CAACTCCACAAGCATGCCAC 60.039 55.000 15.66 0.00 0.00 5.01
144 145 0.467844 AACTCCACAAGCATGCCACA 60.468 50.000 15.66 0.00 0.00 4.17
145 146 1.174712 ACTCCACAAGCATGCCACAC 61.175 55.000 15.66 0.00 0.00 3.82
146 147 1.152798 TCCACAAGCATGCCACACA 60.153 52.632 15.66 0.00 0.00 3.72
147 148 1.007038 CCACAAGCATGCCACACAC 60.007 57.895 15.66 0.00 0.00 3.82
148 149 1.007038 CACAAGCATGCCACACACC 60.007 57.895 15.66 0.00 0.00 4.16
149 150 1.152694 ACAAGCATGCCACACACCT 60.153 52.632 15.66 0.00 0.00 4.00
150 151 0.756442 ACAAGCATGCCACACACCTT 60.756 50.000 15.66 0.00 0.00 3.50
151 152 0.038892 CAAGCATGCCACACACCTTC 60.039 55.000 15.66 0.00 0.00 3.46
152 153 1.181098 AAGCATGCCACACACCTTCC 61.181 55.000 15.66 0.00 0.00 3.46
153 154 1.902918 GCATGCCACACACCTTCCA 60.903 57.895 6.36 0.00 0.00 3.53
154 155 1.462731 GCATGCCACACACCTTCCAA 61.463 55.000 6.36 0.00 0.00 3.53
155 156 1.039068 CATGCCACACACCTTCCAAA 58.961 50.000 0.00 0.00 0.00 3.28
156 157 1.619827 CATGCCACACACCTTCCAAAT 59.380 47.619 0.00 0.00 0.00 2.32
157 158 2.666272 TGCCACACACCTTCCAAATA 57.334 45.000 0.00 0.00 0.00 1.40
158 159 2.235016 TGCCACACACCTTCCAAATAC 58.765 47.619 0.00 0.00 0.00 1.89
159 160 2.235016 GCCACACACCTTCCAAATACA 58.765 47.619 0.00 0.00 0.00 2.29
160 161 2.825532 GCCACACACCTTCCAAATACAT 59.174 45.455 0.00 0.00 0.00 2.29
161 162 4.013728 GCCACACACCTTCCAAATACATA 58.986 43.478 0.00 0.00 0.00 2.29
162 163 4.096382 GCCACACACCTTCCAAATACATAG 59.904 45.833 0.00 0.00 0.00 2.23
163 164 5.496556 CCACACACCTTCCAAATACATAGA 58.503 41.667 0.00 0.00 0.00 1.98
164 165 6.122277 CCACACACCTTCCAAATACATAGAT 58.878 40.000 0.00 0.00 0.00 1.98
165 166 6.260936 CCACACACCTTCCAAATACATAGATC 59.739 42.308 0.00 0.00 0.00 2.75
166 167 7.050377 CACACACCTTCCAAATACATAGATCT 58.950 38.462 0.00 0.00 0.00 2.75
167 168 7.011763 CACACACCTTCCAAATACATAGATCTG 59.988 40.741 5.18 0.00 0.00 2.90
168 169 6.017605 CACACCTTCCAAATACATAGATCTGC 60.018 42.308 5.18 0.00 0.00 4.26
169 170 6.126652 ACACCTTCCAAATACATAGATCTGCT 60.127 38.462 5.18 0.00 0.00 4.24
170 171 6.204301 CACCTTCCAAATACATAGATCTGCTG 59.796 42.308 5.18 5.54 0.00 4.41
171 172 5.180868 CCTTCCAAATACATAGATCTGCTGC 59.819 44.000 5.18 0.00 0.00 5.25
172 173 5.294734 TCCAAATACATAGATCTGCTGCA 57.705 39.130 5.18 0.88 0.00 4.41
173 174 5.683681 TCCAAATACATAGATCTGCTGCAA 58.316 37.500 5.18 0.00 0.00 4.08
174 175 6.121590 TCCAAATACATAGATCTGCTGCAAA 58.878 36.000 5.18 0.00 0.00 3.68
175 176 6.602803 TCCAAATACATAGATCTGCTGCAAAA 59.397 34.615 5.18 0.00 0.00 2.44
176 177 7.286087 TCCAAATACATAGATCTGCTGCAAAAT 59.714 33.333 5.18 0.00 0.00 1.82
177 178 7.924412 CCAAATACATAGATCTGCTGCAAAATT 59.076 33.333 5.18 0.06 0.00 1.82
178 179 8.965172 CAAATACATAGATCTGCTGCAAAATTC 58.035 33.333 5.18 0.00 0.00 2.17
179 180 8.461249 AATACATAGATCTGCTGCAAAATTCT 57.539 30.769 5.18 6.21 0.00 2.40
180 181 9.565090 AATACATAGATCTGCTGCAAAATTCTA 57.435 29.630 5.18 8.14 0.00 2.10
181 182 9.736414 ATACATAGATCTGCTGCAAAATTCTAT 57.264 29.630 5.18 9.93 0.00 1.98
182 183 7.872881 ACATAGATCTGCTGCAAAATTCTATG 58.127 34.615 27.51 27.51 43.42 2.23
183 184 5.769484 AGATCTGCTGCAAAATTCTATGG 57.231 39.130 3.02 0.00 0.00 2.74
184 185 3.788333 TCTGCTGCAAAATTCTATGGC 57.212 42.857 3.02 0.00 0.00 4.40
185 186 3.090790 TCTGCTGCAAAATTCTATGGCA 58.909 40.909 3.02 0.00 0.00 4.92
186 187 3.119388 TCTGCTGCAAAATTCTATGGCAC 60.119 43.478 3.02 0.00 0.00 5.01
201 202 2.585330 TGGCACAAAGAAAGAGATGCA 58.415 42.857 0.00 0.00 34.73 3.96
202 203 2.294233 TGGCACAAAGAAAGAGATGCAC 59.706 45.455 0.00 0.00 34.73 4.57
203 204 2.352127 GGCACAAAGAAAGAGATGCACC 60.352 50.000 0.00 0.00 34.73 5.01
204 205 2.666619 GCACAAAGAAAGAGATGCACCG 60.667 50.000 0.00 0.00 33.27 4.94
205 206 2.095567 CACAAAGAAAGAGATGCACCGG 60.096 50.000 0.00 0.00 0.00 5.28
206 207 1.470098 CAAAGAAAGAGATGCACCGGG 59.530 52.381 6.32 0.00 0.00 5.73
207 208 0.035056 AAGAAAGAGATGCACCGGGG 60.035 55.000 6.32 0.84 0.00 5.73
208 209 1.452108 GAAAGAGATGCACCGGGGG 60.452 63.158 5.47 0.00 0.00 5.40
209 210 1.910580 GAAAGAGATGCACCGGGGGA 61.911 60.000 5.47 1.06 0.00 4.81
210 211 1.915078 AAAGAGATGCACCGGGGGAG 61.915 60.000 5.47 0.00 0.00 4.30
211 212 3.083997 GAGATGCACCGGGGGAGT 61.084 66.667 5.47 0.00 0.00 3.85
212 213 3.391665 GAGATGCACCGGGGGAGTG 62.392 68.421 5.47 0.00 38.30 3.51
213 214 4.489771 GATGCACCGGGGGAGTGG 62.490 72.222 5.47 0.00 35.71 4.00
225 226 3.721706 GAGTGGAGGTGGGGGCTG 61.722 72.222 0.00 0.00 0.00 4.85
253 254 0.458716 GTAAGACGAGGGCAGTGCTC 60.459 60.000 16.11 11.96 0.00 4.26
260 261 4.357279 GGGCAGTGCTCCAAGCCT 62.357 66.667 16.11 0.00 46.23 4.58
272 273 2.594592 AAGCCTGACCACGGTTGC 60.595 61.111 0.00 0.00 0.00 4.17
275 276 2.978010 CCTGACCACGGTTGCCAC 60.978 66.667 0.00 0.00 0.00 5.01
316 317 1.340248 CCCTGCATTGCTCCATCATTC 59.660 52.381 10.49 0.00 0.00 2.67
319 320 1.672363 TGCATTGCTCCATCATTCGTC 59.328 47.619 10.49 0.00 0.00 4.20
327 328 1.202568 CATCATTCGTCGATGCCGC 59.797 57.895 0.00 0.00 34.32 6.53
358 359 1.247567 TGCAAAGGGCTTCAAGCTAC 58.752 50.000 9.83 2.79 45.15 3.58
366 367 0.680921 GCTTCAAGCTACATGGGCCA 60.681 55.000 9.61 9.61 38.45 5.36
371 372 0.960364 AAGCTACATGGGCCACAACG 60.960 55.000 9.28 0.00 0.00 4.10
385 386 2.159099 CCACAACGCTATAGAGAGGCAA 60.159 50.000 10.73 0.00 0.00 4.52
387 388 2.496070 ACAACGCTATAGAGAGGCAACA 59.504 45.455 10.73 0.00 41.41 3.33
389 390 3.166489 ACGCTATAGAGAGGCAACAAC 57.834 47.619 10.73 0.00 41.41 3.32
390 391 2.120232 CGCTATAGAGAGGCAACAACG 58.880 52.381 3.21 0.00 41.41 4.10
391 392 1.861575 GCTATAGAGAGGCAACAACGC 59.138 52.381 3.21 0.00 41.41 4.84
392 393 2.738643 GCTATAGAGAGGCAACAACGCA 60.739 50.000 3.21 0.00 41.41 5.24
393 394 2.015736 ATAGAGAGGCAACAACGCAG 57.984 50.000 0.00 0.00 41.41 5.18
394 395 0.670546 TAGAGAGGCAACAACGCAGC 60.671 55.000 0.00 0.00 41.41 5.25
395 396 2.203195 AGAGGCAACAACGCAGCA 60.203 55.556 0.00 0.00 41.41 4.41
396 397 1.580845 GAGAGGCAACAACGCAGCAT 61.581 55.000 0.00 0.00 41.41 3.79
397 398 1.154150 GAGGCAACAACGCAGCATC 60.154 57.895 0.00 0.00 41.41 3.91
398 399 1.855213 GAGGCAACAACGCAGCATCA 61.855 55.000 0.00 0.00 38.77 3.07
399 400 1.730547 GGCAACAACGCAGCATCAC 60.731 57.895 0.00 0.00 0.00 3.06
400 401 1.283793 GCAACAACGCAGCATCACT 59.716 52.632 0.00 0.00 0.00 3.41
413 414 2.110967 ATCACTGGTGCTGCGATGC 61.111 57.895 0.00 0.00 0.00 3.91
424 425 2.507992 GCGATGCAGCACTCGTCT 60.508 61.111 20.90 0.00 37.23 4.18
426 427 0.596083 GCGATGCAGCACTCGTCTAT 60.596 55.000 20.90 0.00 37.23 1.98
427 428 1.845266 CGATGCAGCACTCGTCTATT 58.155 50.000 15.17 0.00 0.00 1.73
432 433 3.056628 AGCACTCGTCTATTGCTGC 57.943 52.632 0.00 0.00 42.11 5.25
457 458 3.420214 GATGGGAGCGACGCGGTAA 62.420 63.158 15.18 2.31 37.83 2.85
472 473 1.480954 CGGTAAGGTCACCAGTGCTAT 59.519 52.381 0.00 0.00 38.61 2.97
473 474 2.738643 CGGTAAGGTCACCAGTGCTATG 60.739 54.545 0.00 0.00 38.61 2.23
477 478 1.134280 AGGTCACCAGTGCTATGATGC 60.134 52.381 0.00 0.00 0.00 3.91
481 482 0.253894 ACCAGTGCTATGATGCAGCA 59.746 50.000 7.31 7.31 46.47 4.41
495 496 0.457853 GCAGCACTCGTCGATGGTTA 60.458 55.000 4.48 0.00 0.00 2.85
561 563 6.153067 GCGATGCATCTAGTCTACAGTTATT 58.847 40.000 23.73 0.00 0.00 1.40
586 588 2.918345 GCCATGCAACACTCGCCAA 61.918 57.895 0.00 0.00 0.00 4.52
591 593 2.631428 CAACACTCGCCAACACCG 59.369 61.111 0.00 0.00 0.00 4.94
600 602 2.125310 CCAACACCGGCGATGCTA 60.125 61.111 9.30 0.00 0.00 3.49
602 604 1.643292 CAACACCGGCGATGCTATG 59.357 57.895 9.30 0.00 0.00 2.23
615 617 4.609018 CTATGGGGCGGGCGACAG 62.609 72.222 0.00 0.00 0.00 3.51
620 622 2.358984 GGGCGGGCGACAGTTTTA 60.359 61.111 0.00 0.00 0.00 1.52
627 629 0.170339 GGCGACAGTTTTACATGGCC 59.830 55.000 0.00 0.00 0.00 5.36
698 715 2.365635 AGAGTATGGCGGGCTGGT 60.366 61.111 2.38 0.00 0.00 4.00
701 718 4.794648 GTATGGCGGGCTGGTGCA 62.795 66.667 2.38 0.00 41.91 4.57
737 754 1.403679 CTCCGCTGAACAACCAAACAA 59.596 47.619 0.00 0.00 0.00 2.83
740 757 1.134175 CGCTGAACAACCAAACAAGGT 59.866 47.619 0.00 0.00 45.91 3.50
743 760 3.769536 CTGAACAACCAAACAAGGTGAC 58.230 45.455 0.00 0.00 42.25 3.67
747 764 1.944024 CAACCAAACAAGGTGACGCTA 59.056 47.619 0.00 0.00 42.25 4.26
778 795 4.142609 CAGGTTATGCTGTCATGGTACT 57.857 45.455 0.00 0.00 34.22 2.73
779 796 5.276461 CAGGTTATGCTGTCATGGTACTA 57.724 43.478 0.00 0.00 34.22 1.82
780 797 5.292765 CAGGTTATGCTGTCATGGTACTAG 58.707 45.833 0.00 0.00 34.22 2.57
781 798 4.962995 AGGTTATGCTGTCATGGTACTAGT 59.037 41.667 0.00 0.00 34.22 2.57
783 800 6.070194 AGGTTATGCTGTCATGGTACTAGTTT 60.070 38.462 0.00 0.00 34.22 2.66
784 801 6.258068 GGTTATGCTGTCATGGTACTAGTTTC 59.742 42.308 0.00 0.00 34.22 2.78
785 802 4.882842 TGCTGTCATGGTACTAGTTTCA 57.117 40.909 0.00 0.00 0.00 2.69
786 803 5.420725 TGCTGTCATGGTACTAGTTTCAT 57.579 39.130 0.00 2.67 0.00 2.57
787 804 5.419542 TGCTGTCATGGTACTAGTTTCATC 58.580 41.667 0.00 0.00 0.00 2.92
788 805 4.811557 GCTGTCATGGTACTAGTTTCATCC 59.188 45.833 0.00 0.00 0.00 3.51
789 806 5.353394 TGTCATGGTACTAGTTTCATCCC 57.647 43.478 0.00 0.00 0.00 3.85
813 830 0.439985 CATTGTGTTCGCTGACTCGG 59.560 55.000 0.00 0.00 0.00 4.63
817 834 1.602605 TGTTCGCTGACTCGGGAGA 60.603 57.895 2.08 0.00 37.31 3.71
818 835 0.965866 TGTTCGCTGACTCGGGAGAT 60.966 55.000 2.08 0.00 38.80 2.75
829 846 2.774234 ACTCGGGAGATGAATGATGGTT 59.226 45.455 2.08 0.00 38.80 3.67
830 847 3.967326 ACTCGGGAGATGAATGATGGTTA 59.033 43.478 2.08 0.00 38.80 2.85
833 850 3.809832 CGGGAGATGAATGATGGTTACAC 59.190 47.826 0.00 0.00 0.00 2.90
834 851 4.683129 CGGGAGATGAATGATGGTTACACA 60.683 45.833 0.00 0.00 0.00 3.72
835 852 4.818546 GGGAGATGAATGATGGTTACACAG 59.181 45.833 0.00 0.00 0.00 3.66
837 854 4.202441 AGATGAATGATGGTTACACAGGC 58.798 43.478 0.00 0.00 0.00 4.85
838 855 2.355197 TGAATGATGGTTACACAGGCG 58.645 47.619 0.00 0.00 0.00 5.52
839 856 2.027653 TGAATGATGGTTACACAGGCGA 60.028 45.455 0.00 0.00 0.00 5.54
840 857 2.779755 ATGATGGTTACACAGGCGAA 57.220 45.000 0.00 0.00 0.00 4.70
841 858 2.552599 TGATGGTTACACAGGCGAAA 57.447 45.000 0.00 0.00 0.00 3.46
842 859 2.852449 TGATGGTTACACAGGCGAAAA 58.148 42.857 0.00 0.00 0.00 2.29
846 863 2.215196 GGTTACACAGGCGAAAACAGA 58.785 47.619 0.00 0.00 0.00 3.41
871 888 1.518572 CCGACCCGACTGATTTCCG 60.519 63.158 0.00 0.00 0.00 4.30
874 891 0.531200 GACCCGACTGATTTCCGAGT 59.469 55.000 0.00 0.00 0.00 4.18
880 897 2.800544 CGACTGATTTCCGAGTTGTTGT 59.199 45.455 0.00 0.00 0.00 3.32
883 900 5.209818 ACTGATTTCCGAGTTGTTGTCTA 57.790 39.130 0.00 0.00 0.00 2.59
884 901 5.230942 ACTGATTTCCGAGTTGTTGTCTAG 58.769 41.667 0.00 0.00 0.00 2.43
885 902 3.994392 TGATTTCCGAGTTGTTGTCTAGC 59.006 43.478 0.00 0.00 0.00 3.42
886 903 3.462483 TTTCCGAGTTGTTGTCTAGCA 57.538 42.857 0.00 0.00 0.00 3.49
887 904 2.433868 TCCGAGTTGTTGTCTAGCAC 57.566 50.000 0.00 0.00 0.00 4.40
889 906 1.060713 CGAGTTGTTGTCTAGCACCG 58.939 55.000 0.00 0.00 0.00 4.94
890 907 1.602165 CGAGTTGTTGTCTAGCACCGT 60.602 52.381 0.00 0.00 0.00 4.83
892 909 1.687123 AGTTGTTGTCTAGCACCGTCT 59.313 47.619 0.00 0.00 0.00 4.18
893 910 2.102588 AGTTGTTGTCTAGCACCGTCTT 59.897 45.455 0.00 0.00 0.00 3.01
895 912 4.053295 GTTGTTGTCTAGCACCGTCTTTA 58.947 43.478 0.00 0.00 0.00 1.85
896 913 4.530710 TGTTGTCTAGCACCGTCTTTAT 57.469 40.909 0.00 0.00 0.00 1.40
898 915 4.243270 GTTGTCTAGCACCGTCTTTATGT 58.757 43.478 0.00 0.00 0.00 2.29
901 918 4.945543 TGTCTAGCACCGTCTTTATGTCTA 59.054 41.667 0.00 0.00 0.00 2.59
906 923 9.163899 TCTAGCACCGTCTTTATGTCTATATAG 57.836 37.037 3.10 3.10 0.00 1.31
931 948 9.868277 AGAAGAGTAATTAGTCTTGTGAATGAG 57.132 33.333 31.20 0.00 43.89 2.90
932 949 9.862371 GAAGAGTAATTAGTCTTGTGAATGAGA 57.138 33.333 31.20 0.00 43.89 3.27
934 951 9.868277 AGAGTAATTAGTCTTGTGAATGAGAAG 57.132 33.333 15.79 0.00 32.20 2.85
935 952 9.862371 GAGTAATTAGTCTTGTGAATGAGAAGA 57.138 33.333 12.29 0.00 31.60 2.87
1003 1073 7.731054 AGGTGGTTAACTGCAAAATTAAATGA 58.269 30.769 5.42 0.00 0.00 2.57
1263 1333 2.787473 TCAACCGCATCTTCAAGGAT 57.213 45.000 0.00 0.00 0.00 3.24
1433 1526 2.671888 GCCGCCTAAACTGTAGTTTCTC 59.328 50.000 12.84 4.08 44.15 2.87
1449 1580 0.323178 TCTCGGTACAGTCTGTCCCC 60.323 60.000 9.26 9.92 0.00 4.81
1498 1629 4.386761 CCTGGGTGATTTCTTGGTATGGAT 60.387 45.833 0.00 0.00 0.00 3.41
1506 1637 6.380846 TGATTTCTTGGTATGGATTTGGGAAG 59.619 38.462 0.00 0.00 0.00 3.46
1507 1638 4.946160 TCTTGGTATGGATTTGGGAAGT 57.054 40.909 0.00 0.00 0.00 3.01
1508 1639 4.599041 TCTTGGTATGGATTTGGGAAGTG 58.401 43.478 0.00 0.00 0.00 3.16
1509 1640 4.044065 TCTTGGTATGGATTTGGGAAGTGT 59.956 41.667 0.00 0.00 0.00 3.55
1510 1641 3.696045 TGGTATGGATTTGGGAAGTGTG 58.304 45.455 0.00 0.00 0.00 3.82
1511 1642 3.075283 TGGTATGGATTTGGGAAGTGTGT 59.925 43.478 0.00 0.00 0.00 3.72
1512 1643 4.289934 TGGTATGGATTTGGGAAGTGTGTA 59.710 41.667 0.00 0.00 0.00 2.90
1513 1644 4.881850 GGTATGGATTTGGGAAGTGTGTAG 59.118 45.833 0.00 0.00 0.00 2.74
1514 1645 4.927267 ATGGATTTGGGAAGTGTGTAGA 57.073 40.909 0.00 0.00 0.00 2.59
1515 1646 4.715534 TGGATTTGGGAAGTGTGTAGAA 57.284 40.909 0.00 0.00 0.00 2.10
1516 1647 5.055265 TGGATTTGGGAAGTGTGTAGAAA 57.945 39.130 0.00 0.00 0.00 2.52
1517 1648 5.450453 TGGATTTGGGAAGTGTGTAGAAAA 58.550 37.500 0.00 0.00 0.00 2.29
1518 1649 5.300792 TGGATTTGGGAAGTGTGTAGAAAAC 59.699 40.000 0.00 0.00 0.00 2.43
1519 1650 5.278808 GGATTTGGGAAGTGTGTAGAAAACC 60.279 44.000 0.00 0.00 0.00 3.27
1520 1651 4.513406 TTGGGAAGTGTGTAGAAAACCT 57.487 40.909 0.00 0.00 0.00 3.50
1521 1652 3.815809 TGGGAAGTGTGTAGAAAACCTG 58.184 45.455 0.00 0.00 0.00 4.00
1522 1653 3.456644 TGGGAAGTGTGTAGAAAACCTGA 59.543 43.478 0.00 0.00 0.00 3.86
1523 1654 4.104102 TGGGAAGTGTGTAGAAAACCTGAT 59.896 41.667 0.00 0.00 0.00 2.90
1524 1655 5.070685 GGGAAGTGTGTAGAAAACCTGATT 58.929 41.667 0.00 0.00 0.00 2.57
1525 1656 5.181433 GGGAAGTGTGTAGAAAACCTGATTC 59.819 44.000 0.00 0.00 0.00 2.52
1526 1657 5.181433 GGAAGTGTGTAGAAAACCTGATTCC 59.819 44.000 0.00 0.00 0.00 3.01
1527 1658 4.652822 AGTGTGTAGAAAACCTGATTCCC 58.347 43.478 0.00 0.00 0.00 3.97
1528 1659 4.351111 AGTGTGTAGAAAACCTGATTCCCT 59.649 41.667 0.00 0.00 0.00 4.20
1529 1660 4.695928 GTGTGTAGAAAACCTGATTCCCTC 59.304 45.833 0.00 0.00 0.00 4.30
1530 1661 4.597507 TGTGTAGAAAACCTGATTCCCTCT 59.402 41.667 0.00 0.00 0.00 3.69
1540 1671 4.039730 ACCTGATTCCCTCTCGTTGATATG 59.960 45.833 0.00 0.00 0.00 1.78
1545 1676 3.361786 TCCCTCTCGTTGATATGTGTGA 58.638 45.455 0.00 0.00 0.00 3.58
1578 1709 6.803320 AGATTTACTTGATGCGTGTTTTCATG 59.197 34.615 0.00 0.00 39.61 3.07
1632 1766 3.126514 CCATGTTCAGTCAGTCAGAATGC 59.873 47.826 0.00 0.00 41.89 3.56
1633 1767 3.473923 TGTTCAGTCAGTCAGAATGCA 57.526 42.857 0.00 0.00 41.89 3.96
1641 1811 5.466058 CAGTCAGTCAGAATGCAGGATTATC 59.534 44.000 0.00 0.00 35.34 1.75
1693 1867 5.229423 TCATGCAGAAAACATTTTACCTGC 58.771 37.500 17.51 17.51 43.06 4.85
1705 1879 6.541907 ACATTTTACCTGCCATTTTTGGAAT 58.458 32.000 0.00 0.00 0.00 3.01
1746 1920 8.239314 TCTGCTTTCTGCTACTTTTATGAAATG 58.761 33.333 0.00 0.00 43.37 2.32
1782 1962 3.340814 CCATACATGGCAGGATACTCC 57.659 52.381 5.99 0.00 42.73 3.85
1786 2003 6.512893 CCATACATGGCAGGATACTCCTACA 61.513 48.000 5.99 0.00 42.75 2.74
1803 2020 7.609056 ACTCCTACATTACTGTATGTTCGTTT 58.391 34.615 7.75 0.00 39.39 3.60
1806 2023 7.546667 TCCTACATTACTGTATGTTCGTTTTCC 59.453 37.037 7.75 0.00 39.39 3.13
1830 2047 6.042093 CCATTACCTGAGGCTCTTAGATAACA 59.958 42.308 16.72 0.00 0.00 2.41
1838 2055 1.852895 CTCTTAGATAACACGTGCGCC 59.147 52.381 17.22 2.43 0.00 6.53
1858 2075 2.428890 CCTAGGCCTAGCTATTGATCGG 59.571 54.545 31.33 13.03 31.95 4.18
1871 2088 2.669569 ATCGGCTTGCTGCGTGTT 60.670 55.556 0.00 0.00 44.05 3.32
1999 2216 0.251297 CCATTGTGCTGGGGAAGACA 60.251 55.000 0.00 0.00 32.28 3.41
2152 2369 5.351458 CCAAAACTTCCAGGTTCTTTTCTG 58.649 41.667 0.00 0.00 0.00 3.02
2253 2474 3.756117 AGGAAAACTCTGTAGCCAAAGG 58.244 45.455 0.00 0.00 0.00 3.11
2259 2480 2.305052 ACTCTGTAGCCAAAGGTAACCC 59.695 50.000 0.00 0.00 37.17 4.11
2551 2840 6.699642 GTCTAGGATTTTCTAGCTACTTGCAG 59.300 42.308 0.00 0.00 45.94 4.41
2642 2931 2.196595 ACCTCATAGCTGGGCAACTTA 58.803 47.619 0.00 0.00 0.00 2.24
2660 2949 6.250819 CAACTTAACAGCAAGAATCGTATGG 58.749 40.000 0.00 0.00 0.00 2.74
2663 2952 1.210478 ACAGCAAGAATCGTATGGCCT 59.790 47.619 3.32 0.00 0.00 5.19
2679 2968 4.599047 TGGCCTTGTTAATCAACCTTTG 57.401 40.909 3.32 0.00 33.41 2.77
2701 2990 6.558771 TGAATAAATCACTGAATATGGCCG 57.441 37.500 0.00 0.00 31.50 6.13
2709 2998 5.945155 TCACTGAATATGGCCGTTTTAAAC 58.055 37.500 0.77 0.00 0.00 2.01
2726 3015 6.783708 TTTAAACCAGAAACACTGTGGAAT 57.216 33.333 13.09 0.00 44.40 3.01
2732 3021 4.692625 CCAGAAACACTGTGGAATACTGAG 59.307 45.833 13.09 5.29 44.40 3.35
2734 3023 2.370281 ACACTGTGGAATACTGAGCG 57.630 50.000 13.09 0.00 33.00 5.03
2755 3044 8.712363 TGAGCGAAGAATAAATATTCATGCTAC 58.288 33.333 18.38 14.46 43.43 3.58
3030 3322 4.079253 ACATATTTGACTGGTTCGCCTTT 58.921 39.130 0.00 0.00 38.36 3.11
3406 4399 8.157476 AGAACAAATCCTAACATGTACAGAGTT 58.843 33.333 17.35 17.35 0.00 3.01
3423 4416 7.948278 ACAGAGTTAGTTACATTCACTTGTC 57.052 36.000 0.00 0.00 0.00 3.18
3447 4440 3.016474 GAACTGGAAGCTGCGACGC 62.016 63.158 14.19 14.19 37.60 5.19
3507 4503 0.458543 ACGATGTGTGCGATCCTCAC 60.459 55.000 5.96 5.96 38.19 3.51
3815 4841 5.127356 GCAACCCTGTATGTAGACTCTAGTT 59.873 44.000 0.00 0.00 0.00 2.24
3910 4936 7.275888 TGTGTTATCTGCAAATCTTTGACTT 57.724 32.000 6.84 0.00 40.55 3.01
3922 4961 4.846779 TCTTTGACTTTTGTATGCACCC 57.153 40.909 0.00 0.00 0.00 4.61
4055 5111 7.871973 CCAGAGTATTAATCTGTCCATGAAGAG 59.128 40.741 17.25 0.00 42.18 2.85
4172 9651 0.176680 GTCCTGTCTGATGATGCGGT 59.823 55.000 0.00 0.00 0.00 5.68
4178 9657 0.036105 TCTGATGATGCGGTTGCTGT 60.036 50.000 0.00 0.00 43.34 4.40
4179 9658 0.806868 CTGATGATGCGGTTGCTGTT 59.193 50.000 0.00 0.00 43.34 3.16
4181 9660 0.799534 GATGATGCGGTTGCTGTTGC 60.800 55.000 0.00 0.00 43.34 4.17
4266 9779 4.660789 ATTTAATGCATGGCTGTCTTCC 57.339 40.909 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.749996 AGAGGAGGAAGAGATAGATAGATAGAT 57.250 37.037 0.00 0.00 0.00 1.98
24 25 9.213777 GAGAGGAGGAAGAGATAGATAGATAGA 57.786 40.741 0.00 0.00 0.00 1.98
25 26 9.218525 AGAGAGGAGGAAGAGATAGATAGATAG 57.781 40.741 0.00 0.00 0.00 2.08
26 27 9.213777 GAGAGAGGAGGAAGAGATAGATAGATA 57.786 40.741 0.00 0.00 0.00 1.98
27 28 7.908917 AGAGAGAGGAGGAAGAGATAGATAGAT 59.091 40.741 0.00 0.00 0.00 1.98
28 29 7.256399 AGAGAGAGGAGGAAGAGATAGATAGA 58.744 42.308 0.00 0.00 0.00 1.98
29 30 7.401493 AGAGAGAGAGGAGGAAGAGATAGATAG 59.599 44.444 0.00 0.00 0.00 2.08
30 31 7.180946 CAGAGAGAGAGGAGGAAGAGATAGATA 59.819 44.444 0.00 0.00 0.00 1.98
31 32 6.013032 CAGAGAGAGAGGAGGAAGAGATAGAT 60.013 46.154 0.00 0.00 0.00 1.98
32 33 5.307976 CAGAGAGAGAGGAGGAAGAGATAGA 59.692 48.000 0.00 0.00 0.00 1.98
33 34 5.513788 CCAGAGAGAGAGGAGGAAGAGATAG 60.514 52.000 0.00 0.00 0.00 2.08
34 35 4.350816 CCAGAGAGAGAGGAGGAAGAGATA 59.649 50.000 0.00 0.00 0.00 1.98
35 36 3.139025 CCAGAGAGAGAGGAGGAAGAGAT 59.861 52.174 0.00 0.00 0.00 2.75
36 37 2.509548 CCAGAGAGAGAGGAGGAAGAGA 59.490 54.545 0.00 0.00 0.00 3.10
37 38 2.242196 ACCAGAGAGAGAGGAGGAAGAG 59.758 54.545 0.00 0.00 0.00 2.85
38 39 2.283834 ACCAGAGAGAGAGGAGGAAGA 58.716 52.381 0.00 0.00 0.00 2.87
39 40 2.760092 CAACCAGAGAGAGAGGAGGAAG 59.240 54.545 0.00 0.00 0.00 3.46
40 41 2.380249 TCAACCAGAGAGAGAGGAGGAA 59.620 50.000 0.00 0.00 0.00 3.36
41 42 1.996291 TCAACCAGAGAGAGAGGAGGA 59.004 52.381 0.00 0.00 0.00 3.71
42 43 2.523325 TCAACCAGAGAGAGAGGAGG 57.477 55.000 0.00 0.00 0.00 4.30
43 44 4.039730 TGTTTTCAACCAGAGAGAGAGGAG 59.960 45.833 0.00 0.00 0.00 3.69
44 45 3.967326 TGTTTTCAACCAGAGAGAGAGGA 59.033 43.478 0.00 0.00 0.00 3.71
45 46 4.202305 ACTGTTTTCAACCAGAGAGAGAGG 60.202 45.833 0.00 0.00 0.00 3.69
46 47 4.954875 ACTGTTTTCAACCAGAGAGAGAG 58.045 43.478 0.00 0.00 0.00 3.20
47 48 5.118990 CAACTGTTTTCAACCAGAGAGAGA 58.881 41.667 0.00 0.00 0.00 3.10
48 49 4.260948 GCAACTGTTTTCAACCAGAGAGAG 60.261 45.833 0.00 0.00 0.00 3.20
49 50 3.627577 GCAACTGTTTTCAACCAGAGAGA 59.372 43.478 0.00 0.00 0.00 3.10
50 51 3.243201 GGCAACTGTTTTCAACCAGAGAG 60.243 47.826 0.00 0.00 0.00 3.20
51 52 2.687935 GGCAACTGTTTTCAACCAGAGA 59.312 45.455 0.00 0.00 0.00 3.10
52 53 2.541588 CGGCAACTGTTTTCAACCAGAG 60.542 50.000 0.00 0.00 0.00 3.35
53 54 1.403679 CGGCAACTGTTTTCAACCAGA 59.596 47.619 0.00 0.00 0.00 3.86
54 55 1.838913 CGGCAACTGTTTTCAACCAG 58.161 50.000 0.00 0.00 0.00 4.00
55 56 0.179124 GCGGCAACTGTTTTCAACCA 60.179 50.000 0.00 0.00 0.00 3.67
56 57 0.179124 TGCGGCAACTGTTTTCAACC 60.179 50.000 0.00 0.00 0.00 3.77
57 58 1.522258 CATGCGGCAACTGTTTTCAAC 59.478 47.619 6.82 0.00 0.00 3.18
58 59 1.406898 TCATGCGGCAACTGTTTTCAA 59.593 42.857 6.82 0.00 0.00 2.69
59 60 1.028130 TCATGCGGCAACTGTTTTCA 58.972 45.000 6.82 0.00 0.00 2.69
60 61 1.268999 TGTCATGCGGCAACTGTTTTC 60.269 47.619 6.82 0.00 0.00 2.29
61 62 0.743688 TGTCATGCGGCAACTGTTTT 59.256 45.000 6.82 0.00 0.00 2.43
62 63 0.961019 ATGTCATGCGGCAACTGTTT 59.039 45.000 6.82 0.00 0.00 2.83
63 64 0.241749 CATGTCATGCGGCAACTGTT 59.758 50.000 6.82 0.00 0.00 3.16
64 65 0.606130 TCATGTCATGCGGCAACTGT 60.606 50.000 6.82 0.00 0.00 3.55
65 66 0.179181 GTCATGTCATGCGGCAACTG 60.179 55.000 6.82 1.23 0.00 3.16
66 67 0.321919 AGTCATGTCATGCGGCAACT 60.322 50.000 6.82 0.35 0.00 3.16
67 68 0.179181 CAGTCATGTCATGCGGCAAC 60.179 55.000 6.82 1.66 0.00 4.17
68 69 1.925415 GCAGTCATGTCATGCGGCAA 61.925 55.000 19.37 0.00 31.82 4.52
69 70 2.400962 GCAGTCATGTCATGCGGCA 61.401 57.895 19.37 4.58 31.82 5.69
70 71 2.406401 GCAGTCATGTCATGCGGC 59.594 61.111 8.03 11.26 0.00 6.53
73 74 2.406401 GCCGCAGTCATGTCATGC 59.594 61.111 8.03 3.79 36.60 4.06
74 75 1.434622 GAGGCCGCAGTCATGTCATG 61.435 60.000 6.47 6.47 0.00 3.07
75 76 1.153289 GAGGCCGCAGTCATGTCAT 60.153 57.895 0.00 0.00 0.00 3.06
76 77 2.265739 GAGGCCGCAGTCATGTCA 59.734 61.111 0.00 0.00 0.00 3.58
77 78 1.812922 CAGAGGCCGCAGTCATGTC 60.813 63.158 9.88 0.00 0.00 3.06
78 79 2.267006 CAGAGGCCGCAGTCATGT 59.733 61.111 9.88 0.00 0.00 3.21
79 80 1.812922 GACAGAGGCCGCAGTCATG 60.813 63.158 23.88 8.96 0.00 3.07
80 81 1.830587 TTGACAGAGGCCGCAGTCAT 61.831 55.000 29.86 1.76 34.06 3.06
81 82 2.038814 TTTGACAGAGGCCGCAGTCA 62.039 55.000 26.80 26.80 34.06 3.41
82 83 0.884704 TTTTGACAGAGGCCGCAGTC 60.885 55.000 22.44 22.44 0.00 3.51
83 84 0.250901 ATTTTGACAGAGGCCGCAGT 60.251 50.000 9.88 6.78 0.00 4.40
84 85 0.449388 GATTTTGACAGAGGCCGCAG 59.551 55.000 9.88 2.50 0.00 5.18
85 86 0.250684 TGATTTTGACAGAGGCCGCA 60.251 50.000 9.88 0.00 0.00 5.69
86 87 1.064654 GATGATTTTGACAGAGGCCGC 59.935 52.381 0.00 0.00 0.00 6.53
87 88 1.672881 GGATGATTTTGACAGAGGCCG 59.327 52.381 0.00 0.00 0.00 6.13
88 89 2.027385 GGGATGATTTTGACAGAGGCC 58.973 52.381 0.00 0.00 0.00 5.19
89 90 2.948315 GAGGGATGATTTTGACAGAGGC 59.052 50.000 0.00 0.00 0.00 4.70
90 91 3.201290 CGAGGGATGATTTTGACAGAGG 58.799 50.000 0.00 0.00 0.00 3.69
91 92 2.611292 GCGAGGGATGATTTTGACAGAG 59.389 50.000 0.00 0.00 0.00 3.35
92 93 2.027285 TGCGAGGGATGATTTTGACAGA 60.027 45.455 0.00 0.00 0.00 3.41
93 94 2.096496 GTGCGAGGGATGATTTTGACAG 59.904 50.000 0.00 0.00 0.00 3.51
94 95 2.083774 GTGCGAGGGATGATTTTGACA 58.916 47.619 0.00 0.00 0.00 3.58
95 96 1.401905 GGTGCGAGGGATGATTTTGAC 59.598 52.381 0.00 0.00 0.00 3.18
96 97 1.681780 GGGTGCGAGGGATGATTTTGA 60.682 52.381 0.00 0.00 0.00 2.69
97 98 0.740737 GGGTGCGAGGGATGATTTTG 59.259 55.000 0.00 0.00 0.00 2.44
98 99 0.395724 GGGGTGCGAGGGATGATTTT 60.396 55.000 0.00 0.00 0.00 1.82
99 100 1.227383 GGGGTGCGAGGGATGATTT 59.773 57.895 0.00 0.00 0.00 2.17
100 101 2.757124 GGGGGTGCGAGGGATGATT 61.757 63.158 0.00 0.00 0.00 2.57
101 102 3.171388 GGGGGTGCGAGGGATGAT 61.171 66.667 0.00 0.00 0.00 2.45
102 103 4.414956 AGGGGGTGCGAGGGATGA 62.415 66.667 0.00 0.00 0.00 2.92
103 104 3.866582 GAGGGGGTGCGAGGGATG 61.867 72.222 0.00 0.00 0.00 3.51
104 105 4.095400 AGAGGGGGTGCGAGGGAT 62.095 66.667 0.00 0.00 0.00 3.85
105 106 4.779733 GAGAGGGGGTGCGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
109 110 4.649705 TTGGGAGAGGGGGTGCGA 62.650 66.667 0.00 0.00 0.00 5.10
110 111 4.410400 GTTGGGAGAGGGGGTGCG 62.410 72.222 0.00 0.00 0.00 5.34
111 112 2.936032 AGTTGGGAGAGGGGGTGC 60.936 66.667 0.00 0.00 0.00 5.01
112 113 2.301738 GGAGTTGGGAGAGGGGGTG 61.302 68.421 0.00 0.00 0.00 4.61
113 114 2.125225 GGAGTTGGGAGAGGGGGT 59.875 66.667 0.00 0.00 0.00 4.95
114 115 2.124996 TGGAGTTGGGAGAGGGGG 59.875 66.667 0.00 0.00 0.00 5.40
115 116 1.133809 TTGTGGAGTTGGGAGAGGGG 61.134 60.000 0.00 0.00 0.00 4.79
116 117 0.326264 CTTGTGGAGTTGGGAGAGGG 59.674 60.000 0.00 0.00 0.00 4.30
117 118 0.322008 GCTTGTGGAGTTGGGAGAGG 60.322 60.000 0.00 0.00 0.00 3.69
118 119 0.397941 TGCTTGTGGAGTTGGGAGAG 59.602 55.000 0.00 0.00 0.00 3.20
119 120 1.067295 ATGCTTGTGGAGTTGGGAGA 58.933 50.000 0.00 0.00 0.00 3.71
120 121 1.171308 CATGCTTGTGGAGTTGGGAG 58.829 55.000 0.00 0.00 0.00 4.30
121 122 0.895100 GCATGCTTGTGGAGTTGGGA 60.895 55.000 11.37 0.00 0.00 4.37
122 123 1.588082 GCATGCTTGTGGAGTTGGG 59.412 57.895 11.37 0.00 0.00 4.12
123 124 1.180456 TGGCATGCTTGTGGAGTTGG 61.180 55.000 18.92 0.00 0.00 3.77
124 125 0.038892 GTGGCATGCTTGTGGAGTTG 60.039 55.000 18.92 0.00 0.00 3.16
125 126 0.467844 TGTGGCATGCTTGTGGAGTT 60.468 50.000 18.92 0.00 0.00 3.01
126 127 1.151221 TGTGGCATGCTTGTGGAGT 59.849 52.632 18.92 0.00 0.00 3.85
127 128 1.174078 TGTGTGGCATGCTTGTGGAG 61.174 55.000 18.92 0.00 0.00 3.86
128 129 1.152798 TGTGTGGCATGCTTGTGGA 60.153 52.632 18.92 0.00 0.00 4.02
129 130 1.007038 GTGTGTGGCATGCTTGTGG 60.007 57.895 18.92 0.00 0.00 4.17
130 131 1.007038 GGTGTGTGGCATGCTTGTG 60.007 57.895 18.92 0.00 0.00 3.33
131 132 0.756442 AAGGTGTGTGGCATGCTTGT 60.756 50.000 18.92 0.00 0.00 3.16
132 133 0.038892 GAAGGTGTGTGGCATGCTTG 60.039 55.000 18.92 0.00 0.00 4.01
133 134 1.181098 GGAAGGTGTGTGGCATGCTT 61.181 55.000 18.92 0.24 0.00 3.91
134 135 1.604593 GGAAGGTGTGTGGCATGCT 60.605 57.895 18.92 0.00 0.00 3.79
135 136 1.462731 TTGGAAGGTGTGTGGCATGC 61.463 55.000 9.90 9.90 0.00 4.06
136 137 1.039068 TTTGGAAGGTGTGTGGCATG 58.961 50.000 0.00 0.00 0.00 4.06
137 138 2.014010 ATTTGGAAGGTGTGTGGCAT 57.986 45.000 0.00 0.00 0.00 4.40
138 139 2.235016 GTATTTGGAAGGTGTGTGGCA 58.765 47.619 0.00 0.00 0.00 4.92
139 140 2.235016 TGTATTTGGAAGGTGTGTGGC 58.765 47.619 0.00 0.00 0.00 5.01
140 141 5.496556 TCTATGTATTTGGAAGGTGTGTGG 58.503 41.667 0.00 0.00 0.00 4.17
141 142 7.011763 CAGATCTATGTATTTGGAAGGTGTGTG 59.988 40.741 0.00 0.00 0.00 3.82
142 143 7.050377 CAGATCTATGTATTTGGAAGGTGTGT 58.950 38.462 0.00 0.00 0.00 3.72
143 144 6.017605 GCAGATCTATGTATTTGGAAGGTGTG 60.018 42.308 0.00 0.00 0.00 3.82
144 145 6.058183 GCAGATCTATGTATTTGGAAGGTGT 58.942 40.000 0.00 0.00 0.00 4.16
145 146 6.204301 CAGCAGATCTATGTATTTGGAAGGTG 59.796 42.308 0.00 0.00 0.00 4.00
146 147 6.294473 CAGCAGATCTATGTATTTGGAAGGT 58.706 40.000 0.00 0.00 0.00 3.50
147 148 5.180868 GCAGCAGATCTATGTATTTGGAAGG 59.819 44.000 0.00 0.00 0.00 3.46
148 149 5.761726 TGCAGCAGATCTATGTATTTGGAAG 59.238 40.000 0.00 0.00 0.00 3.46
149 150 5.683681 TGCAGCAGATCTATGTATTTGGAA 58.316 37.500 0.00 0.00 0.00 3.53
150 151 5.294734 TGCAGCAGATCTATGTATTTGGA 57.705 39.130 0.00 0.00 0.00 3.53
151 152 6.381481 TTTGCAGCAGATCTATGTATTTGG 57.619 37.500 0.00 0.00 0.00 3.28
152 153 8.867112 AATTTTGCAGCAGATCTATGTATTTG 57.133 30.769 0.00 0.00 0.00 2.32
153 154 8.910944 AGAATTTTGCAGCAGATCTATGTATTT 58.089 29.630 0.00 0.00 0.00 1.40
154 155 8.461249 AGAATTTTGCAGCAGATCTATGTATT 57.539 30.769 0.00 0.00 0.00 1.89
155 156 9.736414 ATAGAATTTTGCAGCAGATCTATGTAT 57.264 29.630 15.19 1.84 29.90 2.29
156 157 8.996271 CATAGAATTTTGCAGCAGATCTATGTA 58.004 33.333 23.99 0.00 39.67 2.29
157 158 7.040617 CCATAGAATTTTGCAGCAGATCTATGT 60.041 37.037 26.68 9.80 41.47 2.29
158 159 7.306213 CCATAGAATTTTGCAGCAGATCTATG 58.694 38.462 24.63 24.63 42.15 2.23
159 160 6.072064 GCCATAGAATTTTGCAGCAGATCTAT 60.072 38.462 12.20 12.20 0.00 1.98
160 161 5.240183 GCCATAGAATTTTGCAGCAGATCTA 59.760 40.000 0.00 3.36 0.00 1.98
161 162 4.037684 GCCATAGAATTTTGCAGCAGATCT 59.962 41.667 0.00 1.09 0.00 2.75
162 163 4.202080 TGCCATAGAATTTTGCAGCAGATC 60.202 41.667 0.00 0.00 0.00 2.75
163 164 3.702548 TGCCATAGAATTTTGCAGCAGAT 59.297 39.130 0.00 0.00 0.00 2.90
164 165 3.090790 TGCCATAGAATTTTGCAGCAGA 58.909 40.909 0.00 0.00 0.00 4.26
165 166 3.184541 GTGCCATAGAATTTTGCAGCAG 58.815 45.455 0.00 0.00 31.69 4.24
166 167 2.561858 TGTGCCATAGAATTTTGCAGCA 59.438 40.909 0.00 0.00 31.69 4.41
167 168 3.235157 TGTGCCATAGAATTTTGCAGC 57.765 42.857 0.00 0.00 31.69 5.25
168 169 5.472148 TCTTTGTGCCATAGAATTTTGCAG 58.528 37.500 0.00 0.00 31.69 4.41
169 170 5.465532 TCTTTGTGCCATAGAATTTTGCA 57.534 34.783 0.00 0.00 0.00 4.08
170 171 6.646240 TCTTTCTTTGTGCCATAGAATTTTGC 59.354 34.615 8.20 0.00 33.11 3.68
171 172 8.084073 TCTCTTTCTTTGTGCCATAGAATTTTG 58.916 33.333 8.20 2.86 33.11 2.44
172 173 8.181904 TCTCTTTCTTTGTGCCATAGAATTTT 57.818 30.769 8.20 0.00 33.11 1.82
173 174 7.765695 TCTCTTTCTTTGTGCCATAGAATTT 57.234 32.000 8.20 0.00 33.11 1.82
174 175 7.630082 GCATCTCTTTCTTTGTGCCATAGAATT 60.630 37.037 8.20 0.00 33.11 2.17
175 176 6.183360 GCATCTCTTTCTTTGTGCCATAGAAT 60.183 38.462 8.20 0.00 33.11 2.40
176 177 5.124457 GCATCTCTTTCTTTGTGCCATAGAA 59.876 40.000 4.72 4.72 31.64 2.10
177 178 4.637534 GCATCTCTTTCTTTGTGCCATAGA 59.362 41.667 0.00 0.00 0.00 1.98
178 179 4.397103 TGCATCTCTTTCTTTGTGCCATAG 59.603 41.667 0.00 0.00 0.00 2.23
179 180 4.156556 GTGCATCTCTTTCTTTGTGCCATA 59.843 41.667 0.00 0.00 0.00 2.74
180 181 3.057033 GTGCATCTCTTTCTTTGTGCCAT 60.057 43.478 0.00 0.00 0.00 4.40
181 182 2.294233 GTGCATCTCTTTCTTTGTGCCA 59.706 45.455 0.00 0.00 0.00 4.92
182 183 2.352127 GGTGCATCTCTTTCTTTGTGCC 60.352 50.000 0.00 0.00 0.00 5.01
183 184 2.666619 CGGTGCATCTCTTTCTTTGTGC 60.667 50.000 0.00 0.00 0.00 4.57
184 185 2.095567 CCGGTGCATCTCTTTCTTTGTG 60.096 50.000 0.00 0.00 0.00 3.33
185 186 2.154462 CCGGTGCATCTCTTTCTTTGT 58.846 47.619 0.00 0.00 0.00 2.83
186 187 1.470098 CCCGGTGCATCTCTTTCTTTG 59.530 52.381 0.00 0.00 0.00 2.77
187 188 1.614317 CCCCGGTGCATCTCTTTCTTT 60.614 52.381 0.00 0.00 0.00 2.52
188 189 0.035056 CCCCGGTGCATCTCTTTCTT 60.035 55.000 0.00 0.00 0.00 2.52
189 190 1.604378 CCCCGGTGCATCTCTTTCT 59.396 57.895 0.00 0.00 0.00 2.52
190 191 1.452108 CCCCCGGTGCATCTCTTTC 60.452 63.158 0.00 0.00 0.00 2.62
191 192 1.915078 CTCCCCCGGTGCATCTCTTT 61.915 60.000 0.00 0.00 0.00 2.52
192 193 2.285368 TCCCCCGGTGCATCTCTT 60.285 61.111 0.00 0.00 0.00 2.85
193 194 2.765807 CTCCCCCGGTGCATCTCT 60.766 66.667 0.00 0.00 0.00 3.10
194 195 3.083997 ACTCCCCCGGTGCATCTC 61.084 66.667 0.00 0.00 0.00 2.75
195 196 3.402681 CACTCCCCCGGTGCATCT 61.403 66.667 0.00 0.00 0.00 2.90
196 197 4.489771 CCACTCCCCCGGTGCATC 62.490 72.222 0.00 0.00 33.78 3.91
208 209 3.721706 CAGCCCCCACCTCCACTC 61.722 72.222 0.00 0.00 0.00 3.51
219 220 3.622060 TTACTTCTGCGGCAGCCCC 62.622 63.158 24.78 0.00 44.33 5.80
220 221 2.046314 TTACTTCTGCGGCAGCCC 60.046 61.111 24.78 0.00 44.33 5.19
221 222 1.079127 TCTTACTTCTGCGGCAGCC 60.079 57.895 24.78 0.00 44.33 4.85
222 223 1.687494 CGTCTTACTTCTGCGGCAGC 61.687 60.000 24.78 0.31 45.41 5.25
223 224 0.109272 TCGTCTTACTTCTGCGGCAG 60.109 55.000 23.72 23.72 0.00 4.85
224 225 0.109272 CTCGTCTTACTTCTGCGGCA 60.109 55.000 1.29 1.29 0.00 5.69
225 226 0.802607 CCTCGTCTTACTTCTGCGGC 60.803 60.000 0.00 0.00 0.00 6.53
226 227 0.179134 CCCTCGTCTTACTTCTGCGG 60.179 60.000 0.00 0.00 0.00 5.69
227 228 0.802607 GCCCTCGTCTTACTTCTGCG 60.803 60.000 0.00 0.00 0.00 5.18
228 229 0.246635 TGCCCTCGTCTTACTTCTGC 59.753 55.000 0.00 0.00 0.00 4.26
229 230 1.546476 ACTGCCCTCGTCTTACTTCTG 59.454 52.381 0.00 0.00 0.00 3.02
230 231 1.546476 CACTGCCCTCGTCTTACTTCT 59.454 52.381 0.00 0.00 0.00 2.85
231 232 1.997669 CACTGCCCTCGTCTTACTTC 58.002 55.000 0.00 0.00 0.00 3.01
232 233 0.037232 GCACTGCCCTCGTCTTACTT 60.037 55.000 0.00 0.00 0.00 2.24
233 234 0.900647 AGCACTGCCCTCGTCTTACT 60.901 55.000 0.00 0.00 0.00 2.24
234 235 0.458716 GAGCACTGCCCTCGTCTTAC 60.459 60.000 0.00 0.00 0.00 2.34
235 236 1.605058 GGAGCACTGCCCTCGTCTTA 61.605 60.000 0.00 0.00 0.00 2.10
253 254 2.113139 AACCGTGGTCAGGCTTGG 59.887 61.111 0.00 0.00 0.00 3.61
260 261 3.800685 CTCGTGGCAACCGTGGTCA 62.801 63.158 0.00 0.00 0.00 4.02
272 273 2.357517 AGGAAGCAACGCTCGTGG 60.358 61.111 0.00 0.00 38.25 4.94
275 276 1.784062 CTTGAGGAAGCAACGCTCG 59.216 57.895 0.00 0.00 38.25 5.03
302 303 2.602257 TCGACGAATGATGGAGCAAT 57.398 45.000 0.00 0.00 0.00 3.56
303 304 2.204237 CATCGACGAATGATGGAGCAA 58.796 47.619 0.00 0.00 39.61 3.91
304 305 1.856802 CATCGACGAATGATGGAGCA 58.143 50.000 0.00 0.00 39.61 4.26
358 359 1.202639 TCTATAGCGTTGTGGCCCATG 60.203 52.381 0.00 0.00 0.00 3.66
366 367 2.496070 TGTTGCCTCTCTATAGCGTTGT 59.504 45.455 0.00 0.00 0.00 3.32
371 372 1.861575 GCGTTGTTGCCTCTCTATAGC 59.138 52.381 0.00 0.00 0.00 2.97
385 386 1.227943 ACCAGTGATGCTGCGTTGT 60.228 52.632 0.00 0.00 43.71 3.32
387 388 2.620112 GCACCAGTGATGCTGCGTT 61.620 57.895 0.82 0.00 43.71 4.84
395 396 2.110967 GCATCGCAGCACCAGTGAT 61.111 57.895 0.99 0.00 36.71 3.06
396 397 2.743538 GCATCGCAGCACCAGTGA 60.744 61.111 0.99 0.00 0.00 3.41
397 398 3.051479 TGCATCGCAGCACCAGTG 61.051 61.111 0.00 0.00 40.11 3.66
424 425 1.685803 CCCATCCAACCTGCAGCAATA 60.686 52.381 8.66 0.00 0.00 1.90
426 427 1.607178 CCCATCCAACCTGCAGCAA 60.607 57.895 8.66 0.00 0.00 3.91
427 428 2.036098 CCCATCCAACCTGCAGCA 59.964 61.111 8.66 0.00 0.00 4.41
432 433 1.450312 GTCGCTCCCATCCAACCTG 60.450 63.158 0.00 0.00 0.00 4.00
457 458 1.134280 GCATCATAGCACTGGTGACCT 60.134 52.381 2.11 0.00 28.08 3.85
472 473 0.803380 CATCGACGAGTGCTGCATCA 60.803 55.000 5.27 0.00 0.00 3.07
473 474 1.485838 CCATCGACGAGTGCTGCATC 61.486 60.000 5.27 3.88 0.00 3.91
477 478 1.269166 GTAACCATCGACGAGTGCTG 58.731 55.000 3.01 0.00 0.00 4.41
481 482 1.403780 GGCTTGTAACCATCGACGAGT 60.404 52.381 3.01 0.00 30.80 4.18
495 496 1.153086 GCGATCCCATCTGGCTTGT 60.153 57.895 0.00 0.00 0.00 3.16
547 548 4.382685 GGCAGCACCAATAACTGTAGACTA 60.383 45.833 0.00 0.00 38.86 2.59
586 588 2.108976 CCATAGCATCGCCGGTGT 59.891 61.111 16.01 0.00 0.00 4.16
598 600 4.609018 CTGTCGCCCGCCCCATAG 62.609 72.222 0.00 0.00 0.00 2.23
602 604 3.905437 TAAAACTGTCGCCCGCCCC 62.905 63.158 0.00 0.00 0.00 5.80
614 616 0.965363 CCTGCGGGCCATGTAAAACT 60.965 55.000 4.39 0.00 0.00 2.66
615 617 1.510844 CCTGCGGGCCATGTAAAAC 59.489 57.895 4.39 0.00 0.00 2.43
680 697 2.423446 CCAGCCCGCCATACTCTC 59.577 66.667 0.00 0.00 0.00 3.20
692 709 0.179163 GTTATTCGCTTGCACCAGCC 60.179 55.000 4.82 0.00 41.13 4.85
693 710 0.179163 GGTTATTCGCTTGCACCAGC 60.179 55.000 0.00 0.00 42.57 4.85
698 715 0.521291 GTGCTGGTTATTCGCTTGCA 59.479 50.000 0.00 0.00 0.00 4.08
701 718 1.739067 GGAGTGCTGGTTATTCGCTT 58.261 50.000 0.00 0.00 0.00 4.68
723 740 2.162608 CGTCACCTTGTTTGGTTGTTCA 59.837 45.455 0.00 0.00 38.45 3.18
737 754 1.511305 CCACGATGTAGCGTCACCT 59.489 57.895 0.00 0.00 43.59 4.00
740 757 2.183300 GCCCACGATGTAGCGTCA 59.817 61.111 0.00 0.00 43.59 4.35
743 760 2.586079 CCTGCCCACGATGTAGCG 60.586 66.667 0.00 0.00 37.29 4.26
747 764 0.748005 GCATAACCTGCCCACGATGT 60.748 55.000 0.00 0.00 45.66 3.06
778 795 4.000325 CACAATGTCACGGGATGAAACTA 59.000 43.478 0.00 0.00 39.72 2.24
779 796 2.813754 CACAATGTCACGGGATGAAACT 59.186 45.455 0.00 0.00 39.72 2.66
780 797 2.552315 ACACAATGTCACGGGATGAAAC 59.448 45.455 0.00 0.00 39.72 2.78
781 798 2.857483 ACACAATGTCACGGGATGAAA 58.143 42.857 0.00 0.00 39.72 2.69
783 800 2.422597 GAACACAATGTCACGGGATGA 58.577 47.619 0.00 0.00 33.79 2.92
784 801 1.128507 CGAACACAATGTCACGGGATG 59.871 52.381 0.00 0.00 0.00 3.51
785 802 1.438651 CGAACACAATGTCACGGGAT 58.561 50.000 0.00 0.00 0.00 3.85
786 803 1.225376 GCGAACACAATGTCACGGGA 61.225 55.000 0.00 0.00 33.29 5.14
787 804 1.206578 GCGAACACAATGTCACGGG 59.793 57.895 9.36 0.00 33.29 5.28
788 805 0.110688 CAGCGAACACAATGTCACGG 60.111 55.000 9.36 0.00 33.29 4.94
789 806 0.858583 TCAGCGAACACAATGTCACG 59.141 50.000 0.00 0.00 34.82 4.35
813 830 4.818546 CCTGTGTAACCATCATTCATCTCC 59.181 45.833 0.00 0.00 34.36 3.71
817 834 2.945008 CGCCTGTGTAACCATCATTCAT 59.055 45.455 0.00 0.00 34.36 2.57
818 835 2.027653 TCGCCTGTGTAACCATCATTCA 60.028 45.455 0.00 0.00 34.36 2.57
829 846 1.493772 CGTCTGTTTTCGCCTGTGTA 58.506 50.000 0.00 0.00 0.00 2.90
830 847 1.157870 CCGTCTGTTTTCGCCTGTGT 61.158 55.000 0.00 0.00 0.00 3.72
833 850 0.669318 TAGCCGTCTGTTTTCGCCTG 60.669 55.000 0.00 0.00 0.00 4.85
834 851 0.669625 GTAGCCGTCTGTTTTCGCCT 60.670 55.000 0.00 0.00 0.00 5.52
835 852 1.632948 GGTAGCCGTCTGTTTTCGCC 61.633 60.000 0.00 0.00 0.00 5.54
837 854 2.067616 CGGTAGCCGTCTGTTTTCG 58.932 57.895 0.00 0.00 42.73 3.46
856 873 0.974383 AACTCGGAAATCAGTCGGGT 59.026 50.000 0.00 0.00 39.48 5.28
871 888 2.059541 GACGGTGCTAGACAACAACTC 58.940 52.381 0.00 0.00 34.73 3.01
874 891 2.902705 AAGACGGTGCTAGACAACAA 57.097 45.000 0.00 0.00 34.73 2.83
880 897 7.997773 ATATAGACATAAAGACGGTGCTAGA 57.002 36.000 0.00 0.00 0.00 2.43
883 900 7.997773 TCTATATAGACATAAAGACGGTGCT 57.002 36.000 8.44 0.00 0.00 4.40
884 901 8.512956 TCTTCTATATAGACATAAAGACGGTGC 58.487 37.037 12.12 0.00 30.81 5.01
886 903 9.796180 ACTCTTCTATATAGACATAAAGACGGT 57.204 33.333 12.12 5.09 30.81 4.83
906 923 9.862371 TCTCATTCACAAGACTAATTACTCTTC 57.138 33.333 4.84 0.00 0.00 2.87
915 932 9.658799 CCTTTATCTTCTCATTCACAAGACTAA 57.341 33.333 0.00 0.00 0.00 2.24
916 933 7.766278 GCCTTTATCTTCTCATTCACAAGACTA 59.234 37.037 0.00 0.00 0.00 2.59
918 935 6.183360 GGCCTTTATCTTCTCATTCACAAGAC 60.183 42.308 0.00 0.00 0.00 3.01
919 936 5.882557 GGCCTTTATCTTCTCATTCACAAGA 59.117 40.000 0.00 0.00 0.00 3.02
920 937 5.649395 TGGCCTTTATCTTCTCATTCACAAG 59.351 40.000 3.32 0.00 0.00 3.16
921 938 5.415701 GTGGCCTTTATCTTCTCATTCACAA 59.584 40.000 3.32 0.00 0.00 3.33
922 939 4.943705 GTGGCCTTTATCTTCTCATTCACA 59.056 41.667 3.32 0.00 0.00 3.58
923 940 4.943705 TGTGGCCTTTATCTTCTCATTCAC 59.056 41.667 3.32 0.00 0.00 3.18
924 941 4.943705 GTGTGGCCTTTATCTTCTCATTCA 59.056 41.667 3.32 0.00 0.00 2.57
928 945 2.642311 TGGTGTGGCCTTTATCTTCTCA 59.358 45.455 3.32 0.00 38.35 3.27
929 946 3.010420 GTGGTGTGGCCTTTATCTTCTC 58.990 50.000 3.32 0.00 38.35 2.87
931 948 2.092323 GGTGGTGTGGCCTTTATCTTC 58.908 52.381 3.32 0.00 38.35 2.87
932 949 1.427368 TGGTGGTGTGGCCTTTATCTT 59.573 47.619 3.32 0.00 38.35 2.40
933 950 1.072266 TGGTGGTGTGGCCTTTATCT 58.928 50.000 3.32 0.00 38.35 1.98
934 951 1.173913 GTGGTGGTGTGGCCTTTATC 58.826 55.000 3.32 0.00 38.35 1.75
935 952 0.777446 AGTGGTGGTGTGGCCTTTAT 59.223 50.000 3.32 0.00 38.35 1.40
936 953 0.553819 AAGTGGTGGTGTGGCCTTTA 59.446 50.000 3.32 0.00 38.35 1.85
1003 1073 3.376859 TCTGCACATTCTGTTTTGTTCGT 59.623 39.130 0.00 0.00 0.00 3.85
1150 1220 2.373707 CCTCCTGCTCCTTCCCCTG 61.374 68.421 0.00 0.00 0.00 4.45
1151 1221 2.041928 CCTCCTGCTCCTTCCCCT 59.958 66.667 0.00 0.00 0.00 4.79
1156 1226 2.227036 CCACCACCTCCTGCTCCTT 61.227 63.158 0.00 0.00 0.00 3.36
1498 1629 4.642885 CAGGTTTTCTACACACTTCCCAAA 59.357 41.667 0.00 0.00 0.00 3.28
1506 1637 4.652822 AGGGAATCAGGTTTTCTACACAC 58.347 43.478 0.00 0.00 0.00 3.82
1507 1638 4.597507 AGAGGGAATCAGGTTTTCTACACA 59.402 41.667 0.00 0.00 0.00 3.72
1508 1639 5.167303 AGAGGGAATCAGGTTTTCTACAC 57.833 43.478 0.00 0.00 0.00 2.90
1509 1640 4.081642 CGAGAGGGAATCAGGTTTTCTACA 60.082 45.833 0.00 0.00 0.00 2.74
1510 1641 4.081586 ACGAGAGGGAATCAGGTTTTCTAC 60.082 45.833 0.00 0.00 0.00 2.59
1511 1642 4.094476 ACGAGAGGGAATCAGGTTTTCTA 58.906 43.478 0.00 0.00 0.00 2.10
1512 1643 2.907042 ACGAGAGGGAATCAGGTTTTCT 59.093 45.455 0.00 0.00 0.00 2.52
1513 1644 3.336138 ACGAGAGGGAATCAGGTTTTC 57.664 47.619 0.00 0.00 0.00 2.29
1514 1645 3.072476 TCAACGAGAGGGAATCAGGTTTT 59.928 43.478 0.00 0.00 0.00 2.43
1515 1646 2.637872 TCAACGAGAGGGAATCAGGTTT 59.362 45.455 0.00 0.00 0.00 3.27
1516 1647 2.257207 TCAACGAGAGGGAATCAGGTT 58.743 47.619 0.00 0.00 0.00 3.50
1517 1648 1.938585 TCAACGAGAGGGAATCAGGT 58.061 50.000 0.00 0.00 0.00 4.00
1518 1649 4.039730 ACATATCAACGAGAGGGAATCAGG 59.960 45.833 0.00 0.00 0.00 3.86
1519 1650 4.987285 CACATATCAACGAGAGGGAATCAG 59.013 45.833 0.00 0.00 0.00 2.90
1520 1651 4.405680 ACACATATCAACGAGAGGGAATCA 59.594 41.667 0.00 0.00 0.00 2.57
1521 1652 4.747108 CACACATATCAACGAGAGGGAATC 59.253 45.833 0.00 0.00 0.00 2.52
1522 1653 4.405680 TCACACATATCAACGAGAGGGAAT 59.594 41.667 0.00 0.00 0.00 3.01
1523 1654 3.767131 TCACACATATCAACGAGAGGGAA 59.233 43.478 0.00 0.00 0.00 3.97
1524 1655 3.130516 GTCACACATATCAACGAGAGGGA 59.869 47.826 0.00 0.00 0.00 4.20
1525 1656 3.448686 GTCACACATATCAACGAGAGGG 58.551 50.000 0.00 0.00 0.00 4.30
1526 1657 3.448686 GGTCACACATATCAACGAGAGG 58.551 50.000 0.00 0.00 0.00 3.69
1527 1658 3.108881 CGGTCACACATATCAACGAGAG 58.891 50.000 0.00 0.00 0.00 3.20
1528 1659 2.490509 ACGGTCACACATATCAACGAGA 59.509 45.455 0.00 0.00 0.00 4.04
1529 1660 2.598637 CACGGTCACACATATCAACGAG 59.401 50.000 0.00 0.00 0.00 4.18
1530 1661 2.229302 TCACGGTCACACATATCAACGA 59.771 45.455 0.00 0.00 0.00 3.85
1540 1671 3.650139 AGTAAATCTGTCACGGTCACAC 58.350 45.455 0.00 0.00 0.00 3.82
1545 1676 3.684788 GCATCAAGTAAATCTGTCACGGT 59.315 43.478 0.00 0.00 0.00 4.83
1610 1741 3.126514 GCATTCTGACTGACTGAACATGG 59.873 47.826 0.00 0.00 38.78 3.66
1611 1742 3.749609 TGCATTCTGACTGACTGAACATG 59.250 43.478 0.00 0.00 38.78 3.21
1632 1766 3.623060 CACTTGTTCCACCGATAATCCTG 59.377 47.826 0.00 0.00 0.00 3.86
1633 1767 3.263425 ACACTTGTTCCACCGATAATCCT 59.737 43.478 0.00 0.00 0.00 3.24
1641 1811 1.202533 AGACTGACACTTGTTCCACCG 60.203 52.381 0.00 0.00 0.00 4.94
1705 1879 8.347771 GCAGAAAGCAGATCAATGTATATTTCA 58.652 33.333 0.00 0.00 44.79 2.69
1723 1897 8.748380 AACATTTCATAAAAGTAGCAGAAAGC 57.252 30.769 0.00 0.00 46.19 3.51
1727 1901 8.846943 TCAGAACATTTCATAAAAGTAGCAGA 57.153 30.769 0.00 0.00 0.00 4.26
1746 1920 4.507710 TGTATGGTGCTCTGAATCAGAAC 58.492 43.478 14.44 10.47 40.18 3.01
1780 1960 7.546667 GGAAAACGAACATACAGTAATGTAGGA 59.453 37.037 20.38 0.00 39.16 2.94
1781 1961 7.332430 TGGAAAACGAACATACAGTAATGTAGG 59.668 37.037 12.92 12.92 39.16 3.18
1782 1962 8.246908 TGGAAAACGAACATACAGTAATGTAG 57.753 34.615 9.15 4.14 39.16 2.74
1786 2003 8.671028 GGTAATGGAAAACGAACATACAGTAAT 58.329 33.333 0.00 0.00 0.00 1.89
1793 2010 5.878116 CCTCAGGTAATGGAAAACGAACATA 59.122 40.000 0.00 0.00 0.00 2.29
1803 2020 4.620723 TCTAAGAGCCTCAGGTAATGGAA 58.379 43.478 0.00 0.00 0.00 3.53
1806 2023 6.926272 GTGTTATCTAAGAGCCTCAGGTAATG 59.074 42.308 0.00 0.00 0.00 1.90
1830 2047 3.528370 CTAGGCCTAGGCGCACGT 61.528 66.667 29.47 11.49 43.06 4.49
1838 2055 2.159170 GCCGATCAATAGCTAGGCCTAG 60.159 54.545 32.12 32.12 38.72 3.02
1858 2075 4.268939 TGGCAACACGCAGCAAGC 62.269 61.111 0.00 0.00 46.17 4.01
1871 2088 2.790433 GTTTCCATAGACCTGTTGGCA 58.210 47.619 0.00 0.00 36.63 4.92
2253 2474 2.927553 TTCTAGCTTCGACGGGTTAC 57.072 50.000 0.00 0.00 0.00 2.50
2259 2480 4.979197 AGCATTAGAATTCTAGCTTCGACG 59.021 41.667 18.72 0.00 29.10 5.12
2327 2548 6.537301 TCATTCTTCATCGTAAACATGGGTAC 59.463 38.462 0.00 0.00 0.00 3.34
2366 2655 4.946445 TGCAAAATCTGAAGCAATTGACA 58.054 34.783 10.34 5.03 33.48 3.58
2551 2840 7.698130 GGCAAACATGACAAATTCTAGTGATAC 59.302 37.037 0.00 0.00 0.00 2.24
2642 2931 2.017049 GGCCATACGATTCTTGCTGTT 58.983 47.619 0.00 0.00 0.00 3.16
2660 2949 8.825667 TTTATTCAAAGGTTGATTAACAAGGC 57.174 30.769 2.50 0.00 39.84 4.35
2679 2968 6.560253 ACGGCCATATTCAGTGATTTATTC 57.440 37.500 2.24 0.00 0.00 1.75
2726 3015 8.712363 GCATGAATATTTATTCTTCGCTCAGTA 58.288 33.333 10.72 0.00 41.93 2.74
2732 3021 7.475565 CACGTAGCATGAATATTTATTCTTCGC 59.524 37.037 14.77 5.49 41.93 4.70
2734 3023 9.798885 GACACGTAGCATGAATATTTATTCTTC 57.201 33.333 10.72 0.00 41.93 2.87
2755 3044 4.992381 AGAAATTCTTCTTTCCGACACG 57.008 40.909 0.00 0.00 38.89 4.49
2790 3079 2.232452 CTGAACCAGAGTGACGGAGAAT 59.768 50.000 0.00 0.00 32.44 2.40
2834 3123 3.543680 TGCTATTGTTCCTAGGTCTGC 57.456 47.619 9.08 5.80 0.00 4.26
3030 3322 1.136891 CCGCATCTGATGGTGTACTCA 59.863 52.381 18.60 0.00 0.00 3.41
3423 4416 0.514691 GCAGCTTCCAGTTCTTGACG 59.485 55.000 0.00 0.00 0.00 4.35
3447 4440 2.374184 CACTCCTCCTCAGGACTACTG 58.626 57.143 0.00 0.00 44.75 2.74
3507 4503 0.108329 ACGTCGTGGGCAGATAAAGG 60.108 55.000 0.00 0.00 0.00 3.11
3815 4841 3.559171 GCTTCCCATACCAACAGACAGAA 60.559 47.826 0.00 0.00 0.00 3.02
3910 4936 0.958382 GCCTGACGGGTGCATACAAA 60.958 55.000 1.33 0.00 37.43 2.83
3922 4961 1.632422 GCAAATCATTTGGCCTGACG 58.368 50.000 12.14 0.00 40.94 4.35
3983 5039 2.093075 ACCATTCTCTGCTCTCCACATG 60.093 50.000 0.00 0.00 0.00 3.21
3989 5045 1.339438 TGGCAACCATTCTCTGCTCTC 60.339 52.381 0.00 0.00 36.32 3.20
4055 5111 6.381481 TCAACAATCATAATCACAGATGCC 57.619 37.500 0.00 0.00 0.00 4.40
4172 9651 1.381056 AACCACCAGGCAACAGCAA 60.381 52.632 0.00 0.00 39.06 3.91
4181 9660 1.903404 GTCAAGGCCAACCACCAGG 60.903 63.158 5.01 0.00 39.06 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.