Multiple sequence alignment - TraesCS7D01G015800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G015800 chr7D 100.000 2693 0 0 1 2693 6818191 6820883 0.000000e+00 4974.0
1 TraesCS7D01G015800 chr7D 76.502 566 65 20 598 1150 7072092 7072602 2.070000e-61 246.0
2 TraesCS7D01G015800 chr7D 78.571 434 46 20 735 1159 6962855 6963250 2.680000e-60 243.0
3 TraesCS7D01G015800 chr7D 86.301 219 25 4 221 435 6966173 6966390 1.610000e-57 233.0
4 TraesCS7D01G015800 chr7D 84.298 242 34 3 197 435 7071855 7072095 1.610000e-57 233.0
5 TraesCS7D01G015800 chr7D 88.119 202 15 5 600 800 6800590 6800783 5.800000e-57 231.0
6 TraesCS7D01G015800 chr7D 82.971 276 15 15 157 432 6800345 6800588 1.260000e-53 220.0
7 TraesCS7D01G015800 chr7D 83.516 91 12 3 735 822 7214664 7214574 6.180000e-12 82.4
8 TraesCS7D01G015800 chr7D 85.714 63 9 0 1456 1518 34332758 34332696 1.730000e-07 67.6
9 TraesCS7D01G015800 chr7A 89.344 1173 64 20 596 1735 7792270 7793414 0.000000e+00 1417.0
10 TraesCS7D01G015800 chr7A 83.649 581 57 14 735 1307 7776042 7776592 1.850000e-141 512.0
11 TraesCS7D01G015800 chr7A 81.677 644 68 20 1806 2418 7793527 7794151 8.660000e-135 490.0
12 TraesCS7D01G015800 chr7A 87.143 420 21 18 18 434 7791882 7792271 1.900000e-121 446.0
13 TraesCS7D01G015800 chr7A 76.348 575 71 23 599 1159 7912527 7913050 5.760000e-62 248.0
14 TraesCS7D01G015800 chr7A 85.185 243 30 4 197 435 7912289 7912529 7.450000e-61 244.0
15 TraesCS7D01G015800 chr7A 92.568 148 11 0 285 432 7795683 7795830 2.100000e-51 213.0
16 TraesCS7D01G015800 chr7A 87.898 157 19 0 979 1135 8078338 8078182 4.580000e-43 185.0
17 TraesCS7D01G015800 chr7A 87.898 157 19 0 979 1135 8198604 8198448 4.580000e-43 185.0
18 TraesCS7D01G015800 chr7A 87.500 112 14 0 324 435 8121096 8120985 2.180000e-26 130.0
19 TraesCS7D01G015800 chr7A 85.577 104 15 0 332 435 7944251 7944148 2.830000e-20 110.0
20 TraesCS7D01G015800 chr7A 90.323 62 6 0 1121 1182 7804761 7804822 6.180000e-12 82.4
21 TraesCS7D01G015800 chr7A 87.671 73 6 3 735 804 8086739 8086667 6.180000e-12 82.4
22 TraesCS7D01G015800 chr7A 87.671 73 6 3 735 804 8207164 8207092 6.180000e-12 82.4
23 TraesCS7D01G015800 chr7A 84.932 73 8 3 735 804 7946697 7946625 1.340000e-08 71.3
24 TraesCS7D01G015800 chrUn 84.192 582 43 22 1360 1899 353760594 353760020 1.110000e-143 520.0
25 TraesCS7D01G015800 chrUn 90.588 85 6 1 1216 1298 353760774 353760690 7.880000e-21 111.0
26 TraesCS7D01G015800 chrUn 85.577 104 15 0 332 435 403384543 403384440 2.830000e-20 110.0
27 TraesCS7D01G015800 chr4A 91.799 378 23 6 1360 1735 733100549 733100178 1.110000e-143 520.0
28 TraesCS7D01G015800 chr4A 84.192 582 43 22 1360 1899 733198974 733198400 1.110000e-143 520.0
29 TraesCS7D01G015800 chr4A 92.000 375 21 6 1360 1732 733041256 733040889 3.970000e-143 518.0
30 TraesCS7D01G015800 chr4A 84.021 582 45 20 1360 1899 733173170 733172595 1.430000e-142 516.0
31 TraesCS7D01G015800 chr4A 84.021 582 45 20 1360 1899 733223764 733223189 1.430000e-142 516.0
32 TraesCS7D01G015800 chr4A 93.993 283 14 1 2411 2693 590099266 590099545 2.480000e-115 425.0
33 TraesCS7D01G015800 chr4A 78.653 698 77 31 618 1280 733246662 733246002 5.400000e-107 398.0
34 TraesCS7D01G015800 chr4A 91.518 224 7 4 804 1018 733607634 733607854 5.640000e-77 298.0
35 TraesCS7D01G015800 chr4A 76.190 504 68 29 670 1159 732486631 732486166 4.510000e-53 219.0
36 TraesCS7D01G015800 chr4A 78.095 315 44 10 845 1159 733059054 733058765 2.760000e-40 176.0
37 TraesCS7D01G015800 chr4A 78.095 315 44 10 845 1159 733118867 733118578 2.760000e-40 176.0
38 TraesCS7D01G015800 chr4A 78.095 315 44 10 845 1159 733241064 733240775 2.760000e-40 176.0
39 TraesCS7D01G015800 chr4A 76.020 392 52 20 771 1150 732904403 732904764 5.960000e-37 165.0
40 TraesCS7D01G015800 chr4A 89.344 122 5 4 657 778 733607391 733607504 2.160000e-31 147.0
41 TraesCS7D01G015800 chr4A 90.588 85 6 1 1216 1298 733100729 733100645 7.880000e-21 111.0
42 TraesCS7D01G015800 chr4A 90.698 86 5 2 1216 1298 733173351 733173266 7.880000e-21 111.0
43 TraesCS7D01G015800 chr4A 90.588 85 6 1 1216 1298 733199154 733199070 7.880000e-21 111.0
44 TraesCS7D01G015800 chr4A 90.588 85 6 1 1216 1298 733223944 733223860 7.880000e-21 111.0
45 TraesCS7D01G015800 chr4A 89.412 85 7 2 1216 1298 733041436 733041352 3.670000e-19 106.0
46 TraesCS7D01G015800 chr5A 95.307 277 10 1 2417 2693 574930003 574930276 1.140000e-118 436.0
47 TraesCS7D01G015800 chr3D 95.307 277 10 1 2417 2693 42240565 42240838 1.140000e-118 436.0
48 TraesCS7D01G015800 chr3D 94.946 277 11 1 2417 2693 42250333 42250606 5.330000e-117 431.0
49 TraesCS7D01G015800 chr3D 94.585 277 12 1 2417 2693 610086707 610086434 2.480000e-115 425.0
50 TraesCS7D01G015800 chr3D 93.907 279 13 2 2415 2693 531685857 531685583 4.150000e-113 418.0
51 TraesCS7D01G015800 chr3D 92.857 168 12 0 433 600 46771556 46771723 7.450000e-61 244.0
52 TraesCS7D01G015800 chr6A 94.565 276 12 1 2418 2693 537468802 537469074 8.910000e-115 424.0
53 TraesCS7D01G015800 chr1B 94.565 276 11 3 2418 2693 656201938 656201667 8.910000e-115 424.0
54 TraesCS7D01G015800 chr2D 94.245 278 12 2 2417 2693 186640899 186640625 3.210000e-114 422.0
55 TraesCS7D01G015800 chr2D 92.857 168 12 0 433 600 420278321 420278154 7.450000e-61 244.0
56 TraesCS7D01G015800 chr2D 91.860 172 13 1 430 600 515460714 515460885 3.470000e-59 239.0
57 TraesCS7D01G015800 chr2D 87.310 197 23 2 428 623 395175261 395175066 9.700000e-55 224.0
58 TraesCS7D01G015800 chr4D 93.023 172 11 1 430 600 452900893 452901064 1.600000e-62 250.0
59 TraesCS7D01G015800 chr5B 92.857 168 12 0 432 599 262533621 262533788 7.450000e-61 244.0
60 TraesCS7D01G015800 chr5B 87.179 78 4 6 1539 1610 333191264 333191341 1.720000e-12 84.2
61 TraesCS7D01G015800 chr1D 90.052 191 16 3 408 597 9218396 9218208 7.450000e-61 244.0
62 TraesCS7D01G015800 chr1D 91.329 173 15 0 429 601 140136977 140137149 1.250000e-58 237.0
63 TraesCS7D01G015800 chr1D 90.055 181 16 2 419 597 68439344 68439164 1.610000e-57 233.0
64 TraesCS7D01G015800 chr6B 89.831 59 3 2 1745 1803 617167467 617167522 3.720000e-09 73.1
65 TraesCS7D01G015800 chr2B 80.612 98 13 6 1536 1628 96260082 96259986 1.340000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G015800 chr7D 6818191 6820883 2692 False 4974.0 4974 100.0000 1 2693 1 chr7D.!!$F1 2692
1 TraesCS7D01G015800 chr7D 7071855 7072602 747 False 239.5 246 80.4000 197 1150 2 chr7D.!!$F4 953
2 TraesCS7D01G015800 chr7D 6962855 6966390 3535 False 238.0 243 82.4360 221 1159 2 chr7D.!!$F3 938
3 TraesCS7D01G015800 chr7A 7791882 7795830 3948 False 641.5 1417 87.6830 18 2418 4 chr7A.!!$F3 2400
4 TraesCS7D01G015800 chr7A 7776042 7776592 550 False 512.0 512 83.6490 735 1307 1 chr7A.!!$F1 572
5 TraesCS7D01G015800 chr7A 7912289 7913050 761 False 246.0 248 80.7665 197 1159 2 chr7A.!!$F4 962
6 TraesCS7D01G015800 chrUn 353760020 353760774 754 True 315.5 520 87.3900 1216 1899 2 chrUn.!!$R2 683
7 TraesCS7D01G015800 chr4A 733246002 733246662 660 True 398.0 398 78.6530 618 1280 1 chr4A.!!$R5 662
8 TraesCS7D01G015800 chr4A 733100178 733100729 551 True 315.5 520 91.1935 1216 1735 2 chr4A.!!$R7 519
9 TraesCS7D01G015800 chr4A 733198400 733199154 754 True 315.5 520 87.3900 1216 1899 2 chr4A.!!$R9 683
10 TraesCS7D01G015800 chr4A 733172595 733173351 756 True 313.5 516 87.3595 1216 1899 2 chr4A.!!$R8 683
11 TraesCS7D01G015800 chr4A 733223189 733223944 755 True 313.5 516 87.3045 1216 1899 2 chr4A.!!$R10 683
12 TraesCS7D01G015800 chr4A 733040889 733041436 547 True 312.0 518 90.7060 1216 1732 2 chr4A.!!$R6 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 601 0.032714 AGGAACGGAGGGGGTAGTAC 60.033 60.0 0.0 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 4299 0.033208 CTAAGCCAGGCCCATTCCAA 60.033 55.0 8.22 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.939163 GGTGATGCCTTCATTAATCAGACTAT 59.061 38.462 0.00 0.00 36.54 2.12
46 47 8.772705 CCTTCATTAATCAGACTATGCTTTCTC 58.227 37.037 0.00 0.00 0.00 2.87
72 73 8.390854 GATTCATCGAATGGAAATGATTATGC 57.609 34.615 0.00 0.00 31.89 3.14
73 74 6.880942 TCATCGAATGGAAATGATTATGCA 57.119 33.333 0.00 0.00 0.00 3.96
74 75 6.905578 TCATCGAATGGAAATGATTATGCAG 58.094 36.000 0.00 0.00 0.00 4.41
128 129 6.703607 GTCTTGTGACCAATCATAGGATACAG 59.296 42.308 0.00 0.00 35.10 2.74
151 152 8.314751 ACAGCCATGTATTATTCTATCTACACC 58.685 37.037 0.00 0.00 38.09 4.16
152 153 8.314021 CAGCCATGTATTATTCTATCTACACCA 58.686 37.037 0.00 0.00 0.00 4.17
153 154 8.535335 AGCCATGTATTATTCTATCTACACCAG 58.465 37.037 0.00 0.00 0.00 4.00
154 155 7.766278 GCCATGTATTATTCTATCTACACCAGG 59.234 40.741 0.00 0.00 0.00 4.45
155 156 8.816894 CCATGTATTATTCTATCTACACCAGGT 58.183 37.037 0.00 0.00 0.00 4.00
158 159 9.429109 TGTATTATTCTATCTACACCAGGTTGA 57.571 33.333 0.00 0.00 35.74 3.18
159 160 9.694137 GTATTATTCTATCTACACCAGGTTGAC 57.306 37.037 0.00 0.00 34.12 3.18
160 161 5.615925 ATTCTATCTACACCAGGTTGACC 57.384 43.478 0.00 0.00 34.12 4.02
161 162 4.055710 TCTATCTACACCAGGTTGACCA 57.944 45.455 2.56 0.00 38.89 4.02
162 163 4.620723 TCTATCTACACCAGGTTGACCAT 58.379 43.478 2.56 0.00 38.89 3.55
163 164 5.773091 TCTATCTACACCAGGTTGACCATA 58.227 41.667 2.56 0.00 38.89 2.74
164 165 6.199376 TCTATCTACACCAGGTTGACCATAA 58.801 40.000 2.56 0.00 38.89 1.90
165 166 5.975988 ATCTACACCAGGTTGACCATAAT 57.024 39.130 2.56 0.00 38.89 1.28
166 167 5.097742 TCTACACCAGGTTGACCATAATG 57.902 43.478 2.56 0.00 38.89 1.90
167 168 3.806949 ACACCAGGTTGACCATAATGT 57.193 42.857 2.56 0.00 38.89 2.71
168 169 3.686016 ACACCAGGTTGACCATAATGTC 58.314 45.455 2.56 0.00 38.89 3.06
169 170 3.330701 ACACCAGGTTGACCATAATGTCT 59.669 43.478 2.56 0.00 38.89 3.41
170 171 4.202567 ACACCAGGTTGACCATAATGTCTT 60.203 41.667 2.56 0.00 38.89 3.01
171 172 4.396166 CACCAGGTTGACCATAATGTCTTC 59.604 45.833 2.56 0.00 38.89 2.87
172 173 3.947834 CCAGGTTGACCATAATGTCTTCC 59.052 47.826 2.56 0.00 38.89 3.46
173 174 4.567537 CCAGGTTGACCATAATGTCTTCCA 60.568 45.833 2.56 0.00 38.89 3.53
174 175 5.195940 CAGGTTGACCATAATGTCTTCCAT 58.804 41.667 2.56 0.00 38.89 3.41
210 211 5.467063 TGCGATACATACAAGTGTTCAAACA 59.533 36.000 0.00 0.00 36.38 2.83
240 241 2.123897 GGCCAACCACCACACTGT 60.124 61.111 0.00 0.00 35.26 3.55
254 255 2.923655 CACACTGTAGCAGTTACATCGG 59.076 50.000 0.00 0.00 42.59 4.18
255 256 2.823747 ACACTGTAGCAGTTACATCGGA 59.176 45.455 0.00 0.00 42.59 4.55
256 257 3.179830 CACTGTAGCAGTTACATCGGAC 58.820 50.000 0.00 0.00 42.59 4.79
257 258 2.823747 ACTGTAGCAGTTACATCGGACA 59.176 45.455 0.00 0.00 42.59 4.02
258 259 3.447586 ACTGTAGCAGTTACATCGGACAT 59.552 43.478 0.00 0.00 42.59 3.06
259 260 3.780902 TGTAGCAGTTACATCGGACATG 58.219 45.455 0.00 0.00 37.35 3.21
261 262 2.893637 AGCAGTTACATCGGACATGAC 58.106 47.619 0.00 0.00 0.00 3.06
262 263 2.233676 AGCAGTTACATCGGACATGACA 59.766 45.455 0.00 0.00 0.00 3.58
264 265 3.623060 GCAGTTACATCGGACATGACAAT 59.377 43.478 0.00 0.00 0.00 2.71
265 266 4.494690 GCAGTTACATCGGACATGACAATG 60.495 45.833 0.00 4.03 39.89 2.82
266 267 3.623060 AGTTACATCGGACATGACAATGC 59.377 43.478 0.00 0.00 37.29 3.56
267 268 2.112380 ACATCGGACATGACAATGCA 57.888 45.000 0.00 0.00 37.29 3.96
270 271 3.444742 ACATCGGACATGACAATGCAAAT 59.555 39.130 0.00 0.00 37.29 2.32
271 272 3.490800 TCGGACATGACAATGCAAATG 57.509 42.857 0.00 0.00 37.29 2.32
274 275 4.158209 TCGGACATGACAATGCAAATGATT 59.842 37.500 9.59 0.00 37.29 2.57
276 277 5.684184 CGGACATGACAATGCAAATGATTAG 59.316 40.000 9.59 0.86 37.29 1.73
277 278 5.461078 GGACATGACAATGCAAATGATTAGC 59.539 40.000 9.59 0.00 37.29 3.09
282 283 4.823157 ACAATGCAAATGATTAGCAGCAA 58.177 34.783 9.59 0.00 42.14 3.91
283 284 4.868171 ACAATGCAAATGATTAGCAGCAAG 59.132 37.500 9.59 0.00 42.14 4.01
284 285 2.883574 TGCAAATGATTAGCAGCAAGC 58.116 42.857 0.00 0.00 46.19 4.01
300 301 4.751431 GCATGAGGCAGGAACCTT 57.249 55.556 0.00 0.00 41.32 3.50
303 304 1.747709 CATGAGGCAGGAACCTTCTG 58.252 55.000 0.00 0.00 41.32 3.02
304 305 1.280133 CATGAGGCAGGAACCTTCTGA 59.720 52.381 0.00 0.00 41.32 3.27
305 306 0.687354 TGAGGCAGGAACCTTCTGAC 59.313 55.000 0.00 0.00 41.32 3.51
306 307 0.035915 GAGGCAGGAACCTTCTGACC 60.036 60.000 0.00 0.00 41.02 4.02
307 308 1.376037 GGCAGGAACCTTCTGACCG 60.376 63.158 0.00 0.00 34.30 4.79
310 311 2.046217 GGAACCTTCTGACCGCCC 60.046 66.667 0.00 0.00 0.00 6.13
313 314 4.974438 ACCTTCTGACCGCCCCCA 62.974 66.667 0.00 0.00 0.00 4.96
314 315 3.646715 CCTTCTGACCGCCCCCAA 61.647 66.667 0.00 0.00 0.00 4.12
315 316 2.677228 CTTCTGACCGCCCCCAAT 59.323 61.111 0.00 0.00 0.00 3.16
316 317 1.452108 CTTCTGACCGCCCCCAATC 60.452 63.158 0.00 0.00 0.00 2.67
318 319 1.784301 TTCTGACCGCCCCCAATCAA 61.784 55.000 0.00 0.00 0.00 2.57
319 320 2.034999 TGACCGCCCCCAATCAAC 59.965 61.111 0.00 0.00 0.00 3.18
320 321 3.131478 GACCGCCCCCAATCAACG 61.131 66.667 0.00 0.00 0.00 4.10
322 323 2.824041 CCGCCCCCAATCAACGAG 60.824 66.667 0.00 0.00 0.00 4.18
323 324 3.508840 CGCCCCCAATCAACGAGC 61.509 66.667 0.00 0.00 0.00 5.03
325 326 1.754234 GCCCCCAATCAACGAGCAT 60.754 57.895 0.00 0.00 0.00 3.79
326 327 0.465460 GCCCCCAATCAACGAGCATA 60.465 55.000 0.00 0.00 0.00 3.14
328 329 1.676006 CCCCCAATCAACGAGCATAAC 59.324 52.381 0.00 0.00 0.00 1.89
329 330 1.676006 CCCCAATCAACGAGCATAACC 59.324 52.381 0.00 0.00 0.00 2.85
330 331 1.330521 CCCAATCAACGAGCATAACCG 59.669 52.381 0.00 0.00 0.00 4.44
331 332 1.268032 CCAATCAACGAGCATAACCGC 60.268 52.381 0.00 0.00 0.00 5.68
332 333 1.396648 CAATCAACGAGCATAACCGCA 59.603 47.619 0.00 0.00 0.00 5.69
333 334 1.006832 ATCAACGAGCATAACCGCAC 58.993 50.000 0.00 0.00 0.00 5.34
334 335 0.319986 TCAACGAGCATAACCGCACA 60.320 50.000 0.00 0.00 0.00 4.57
336 337 1.130373 CAACGAGCATAACCGCACAAT 59.870 47.619 0.00 0.00 0.00 2.71
337 338 1.448985 ACGAGCATAACCGCACAATT 58.551 45.000 0.00 0.00 0.00 2.32
339 340 3.004171 ACGAGCATAACCGCACAATTAA 58.996 40.909 0.00 0.00 0.00 1.40
343 344 4.732784 AGCATAACCGCACAATTAACAAG 58.267 39.130 0.00 0.00 0.00 3.16
344 345 3.303229 GCATAACCGCACAATTAACAAGC 59.697 43.478 0.00 0.00 0.00 4.01
347 348 4.775058 AACCGCACAATTAACAAGCATA 57.225 36.364 0.00 0.00 0.00 3.14
350 351 5.339990 ACCGCACAATTAACAAGCATAATC 58.660 37.500 0.00 0.00 0.00 1.75
352 353 5.804473 CCGCACAATTAACAAGCATAATCAA 59.196 36.000 0.00 0.00 0.00 2.57
353 354 6.309980 CCGCACAATTAACAAGCATAATCAAA 59.690 34.615 0.00 0.00 0.00 2.69
354 355 7.385650 CGCACAATTAACAAGCATAATCAAAG 58.614 34.615 0.00 0.00 0.00 2.77
356 357 9.090692 GCACAATTAACAAGCATAATCAAAGAT 57.909 29.630 0.00 0.00 0.00 2.40
386 387 9.426534 TCTTCATAGAAAGATTGATACTCTGGA 57.573 33.333 0.00 0.00 30.38 3.86
389 390 9.599056 TCATAGAAAGATTGATACTCTGGATCT 57.401 33.333 0.00 0.00 0.00 2.75
390 391 9.642327 CATAGAAAGATTGATACTCTGGATCTG 57.358 37.037 0.00 0.00 0.00 2.90
391 392 7.065120 AGAAAGATTGATACTCTGGATCTGG 57.935 40.000 0.00 0.00 0.00 3.86
392 393 5.822132 AAGATTGATACTCTGGATCTGGG 57.178 43.478 0.00 0.00 0.00 4.45
394 395 3.706389 TTGATACTCTGGATCTGGGGA 57.294 47.619 0.00 0.00 0.00 4.81
395 396 2.964209 TGATACTCTGGATCTGGGGAC 58.036 52.381 0.00 0.00 0.00 4.46
396 397 2.247372 TGATACTCTGGATCTGGGGACA 59.753 50.000 0.00 0.00 39.59 4.02
397 398 3.116590 TGATACTCTGGATCTGGGGACAT 60.117 47.826 0.00 0.00 41.51 3.06
400 401 1.415659 CTCTGGATCTGGGGACATCAC 59.584 57.143 0.00 0.00 41.51 3.06
401 402 1.206878 CTGGATCTGGGGACATCACA 58.793 55.000 0.00 0.00 41.51 3.58
402 403 1.140452 CTGGATCTGGGGACATCACAG 59.860 57.143 0.00 0.00 41.51 3.66
403 404 0.471617 GGATCTGGGGACATCACAGG 59.528 60.000 0.00 0.00 41.51 4.00
404 405 1.207791 GATCTGGGGACATCACAGGT 58.792 55.000 0.00 0.00 41.51 4.00
405 406 1.561542 GATCTGGGGACATCACAGGTT 59.438 52.381 0.00 0.00 41.51 3.50
407 408 0.322816 CTGGGGACATCACAGGTTGG 60.323 60.000 0.00 0.00 41.51 3.77
408 409 1.678970 GGGGACATCACAGGTTGGC 60.679 63.158 0.00 0.00 0.00 4.52
409 410 1.074775 GGGACATCACAGGTTGGCA 59.925 57.895 0.00 0.00 0.00 4.92
410 411 0.539438 GGGACATCACAGGTTGGCAA 60.539 55.000 0.00 0.00 0.00 4.52
420 421 3.698765 GTTGGCAACCATCCCCTG 58.301 61.111 19.57 0.00 31.53 4.45
423 424 2.440980 GGCAACCATCCCCTGCTC 60.441 66.667 0.00 0.00 36.32 4.26
424 425 2.679716 GCAACCATCCCCTGCTCT 59.320 61.111 0.00 0.00 33.20 4.09
427 428 0.329261 CAACCATCCCCTGCTCTTCA 59.671 55.000 0.00 0.00 0.00 3.02
429 430 0.842030 ACCATCCCCTGCTCTTCACA 60.842 55.000 0.00 0.00 0.00 3.58
430 431 0.549950 CCATCCCCTGCTCTTCACAT 59.450 55.000 0.00 0.00 0.00 3.21
431 432 1.770658 CCATCCCCTGCTCTTCACATA 59.229 52.381 0.00 0.00 0.00 2.29
432 433 2.374504 CCATCCCCTGCTCTTCACATAT 59.625 50.000 0.00 0.00 0.00 1.78
433 434 3.584406 CCATCCCCTGCTCTTCACATATA 59.416 47.826 0.00 0.00 0.00 0.86
434 435 4.564406 CCATCCCCTGCTCTTCACATATAC 60.564 50.000 0.00 0.00 0.00 1.47
436 437 3.898123 TCCCCTGCTCTTCACATATACTC 59.102 47.826 0.00 0.00 0.00 2.59
437 438 3.007398 CCCCTGCTCTTCACATATACTCC 59.993 52.174 0.00 0.00 0.00 3.85
438 439 3.007398 CCCTGCTCTTCACATATACTCCC 59.993 52.174 0.00 0.00 0.00 4.30
439 440 3.900601 CCTGCTCTTCACATATACTCCCT 59.099 47.826 0.00 0.00 0.00 4.20
441 442 3.898123 TGCTCTTCACATATACTCCCTCC 59.102 47.826 0.00 0.00 0.00 4.30
442 443 3.898123 GCTCTTCACATATACTCCCTCCA 59.102 47.826 0.00 0.00 0.00 3.86
443 444 4.530161 GCTCTTCACATATACTCCCTCCAT 59.470 45.833 0.00 0.00 0.00 3.41
444 445 5.012561 GCTCTTCACATATACTCCCTCCATT 59.987 44.000 0.00 0.00 0.00 3.16
445 446 6.672266 TCTTCACATATACTCCCTCCATTC 57.328 41.667 0.00 0.00 0.00 2.67
446 447 6.385443 TCTTCACATATACTCCCTCCATTCT 58.615 40.000 0.00 0.00 0.00 2.40
449 450 6.143206 TCACATATACTCCCTCCATTCTCAA 58.857 40.000 0.00 0.00 0.00 3.02
450 451 6.615316 TCACATATACTCCCTCCATTCTCAAA 59.385 38.462 0.00 0.00 0.00 2.69
453 454 9.343994 ACATATACTCCCTCCATTCTCAAATAT 57.656 33.333 0.00 0.00 0.00 1.28
457 458 7.698163 ACTCCCTCCATTCTCAAATATAAGT 57.302 36.000 0.00 0.00 0.00 2.24
459 460 7.570607 ACTCCCTCCATTCTCAAATATAAGTCT 59.429 37.037 0.00 0.00 0.00 3.24
460 461 8.337118 TCCCTCCATTCTCAAATATAAGTCTT 57.663 34.615 0.00 0.00 0.00 3.01
461 462 8.781951 TCCCTCCATTCTCAAATATAAGTCTTT 58.218 33.333 0.00 0.00 0.00 2.52
462 463 9.061435 CCCTCCATTCTCAAATATAAGTCTTTC 57.939 37.037 0.00 0.00 0.00 2.62
463 464 9.844257 CCTCCATTCTCAAATATAAGTCTTTCT 57.156 33.333 0.00 0.00 0.00 2.52
480 481 9.620259 AAGTCTTTCTAGAGATTTCAACAAGTT 57.380 29.630 0.00 0.00 0.00 2.66
481 482 9.620259 AGTCTTTCTAGAGATTTCAACAAGTTT 57.380 29.630 0.00 0.00 0.00 2.66
482 483 9.871299 GTCTTTCTAGAGATTTCAACAAGTTTC 57.129 33.333 0.00 0.00 0.00 2.78
483 484 9.838339 TCTTTCTAGAGATTTCAACAAGTTTCT 57.162 29.630 0.00 0.00 0.00 2.52
492 493 7.876068 AGATTTCAACAAGTTTCTACATACGGA 59.124 33.333 0.00 0.00 0.00 4.69
493 494 7.416154 TTTCAACAAGTTTCTACATACGGAG 57.584 36.000 0.00 0.00 0.00 4.63
494 495 4.927425 TCAACAAGTTTCTACATACGGAGC 59.073 41.667 0.00 0.00 0.00 4.70
497 498 5.302360 ACAAGTTTCTACATACGGAGCAAA 58.698 37.500 0.00 0.00 0.00 3.68
499 500 5.857822 AGTTTCTACATACGGAGCAAAAC 57.142 39.130 0.00 0.00 0.00 2.43
501 502 3.853831 TCTACATACGGAGCAAAACGA 57.146 42.857 0.00 0.00 0.00 3.85
503 504 2.450609 ACATACGGAGCAAAACGAGT 57.549 45.000 0.00 0.00 0.00 4.18
504 505 2.066262 ACATACGGAGCAAAACGAGTG 58.934 47.619 0.00 0.00 0.00 3.51
505 506 2.288579 ACATACGGAGCAAAACGAGTGA 60.289 45.455 0.00 0.00 0.00 3.41
507 508 1.878953 ACGGAGCAAAACGAGTGAAT 58.121 45.000 0.00 0.00 0.00 2.57
508 509 1.798813 ACGGAGCAAAACGAGTGAATC 59.201 47.619 0.00 0.00 0.00 2.52
509 510 2.069273 CGGAGCAAAACGAGTGAATCT 58.931 47.619 0.00 0.00 0.00 2.40
511 512 3.060895 CGGAGCAAAACGAGTGAATCTAC 59.939 47.826 0.00 0.00 0.00 2.59
512 513 3.994392 GGAGCAAAACGAGTGAATCTACA 59.006 43.478 0.00 0.00 0.00 2.74
529 530 9.817809 TGAATCTACACTCTAAAATATGTCCAC 57.182 33.333 0.00 0.00 0.00 4.02
535 536 7.553334 ACACTCTAAAATATGTCCACATACGT 58.447 34.615 1.42 0.00 41.15 3.57
536 537 8.038944 ACACTCTAAAATATGTCCACATACGTT 58.961 33.333 0.00 2.64 41.15 3.99
537 538 8.540492 CACTCTAAAATATGTCCACATACGTTC 58.460 37.037 0.00 0.00 41.15 3.95
538 539 7.434307 ACTCTAAAATATGTCCACATACGTTCG 59.566 37.037 0.00 0.00 41.15 3.95
541 542 9.188588 CTAAAATATGTCCACATACGTTCGTAT 57.811 33.333 11.35 11.35 41.15 3.06
553 554 7.445900 CATACGTTCGTATGTTGTAGTCAAT 57.554 36.000 26.81 1.20 41.55 2.57
554 555 7.891782 CATACGTTCGTATGTTGTAGTCAATT 58.108 34.615 26.81 0.00 41.55 2.32
555 556 6.774354 ACGTTCGTATGTTGTAGTCAATTT 57.226 33.333 0.00 0.00 35.92 1.82
557 558 8.296799 ACGTTCGTATGTTGTAGTCAATTTAA 57.703 30.769 0.00 0.00 35.92 1.52
558 559 8.763356 ACGTTCGTATGTTGTAGTCAATTTAAA 58.237 29.630 0.00 0.00 35.92 1.52
559 560 9.583530 CGTTCGTATGTTGTAGTCAATTTAAAA 57.416 29.630 0.00 0.00 35.92 1.52
591 592 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
592 593 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
593 594 5.543020 AGACTTATATTTAGGAACGGAGGGG 59.457 44.000 0.00 0.00 0.00 4.79
594 595 4.596212 ACTTATATTTAGGAACGGAGGGGG 59.404 45.833 0.00 0.00 0.00 5.40
595 596 2.574074 TATTTAGGAACGGAGGGGGT 57.426 50.000 0.00 0.00 0.00 4.95
596 597 2.574074 ATTTAGGAACGGAGGGGGTA 57.426 50.000 0.00 0.00 0.00 3.69
597 598 1.870064 TTTAGGAACGGAGGGGGTAG 58.130 55.000 0.00 0.00 0.00 3.18
598 599 0.712380 TTAGGAACGGAGGGGGTAGT 59.288 55.000 0.00 0.00 0.00 2.73
599 600 1.607225 TAGGAACGGAGGGGGTAGTA 58.393 55.000 0.00 0.00 0.00 1.82
600 601 0.032714 AGGAACGGAGGGGGTAGTAC 60.033 60.000 0.00 0.00 0.00 2.73
601 602 0.324645 GGAACGGAGGGGGTAGTACA 60.325 60.000 2.06 0.00 0.00 2.90
602 603 1.690527 GGAACGGAGGGGGTAGTACAT 60.691 57.143 2.06 0.00 0.00 2.29
603 604 1.411612 GAACGGAGGGGGTAGTACATG 59.588 57.143 2.06 0.00 0.00 3.21
604 605 0.398098 ACGGAGGGGGTAGTACATGG 60.398 60.000 2.06 0.00 0.00 3.66
605 606 0.398098 CGGAGGGGGTAGTACATGGT 60.398 60.000 2.06 0.00 0.00 3.55
606 607 1.133388 CGGAGGGGGTAGTACATGGTA 60.133 57.143 2.06 0.00 0.00 3.25
607 608 2.323599 GGAGGGGGTAGTACATGGTAC 58.676 57.143 2.06 0.00 0.00 3.34
620 621 3.623848 TGGTACATGCACCAGACAC 57.376 52.632 14.12 0.00 43.76 3.67
625 626 0.535780 ACATGCACCAGACACCACAG 60.536 55.000 0.00 0.00 0.00 3.66
639 640 0.883833 CCACAGGTGTCCAAGATTGC 59.116 55.000 0.00 0.00 0.00 3.56
651 652 4.093850 GTCCAAGATTGCCAAATCATTTGC 59.906 41.667 4.40 1.50 44.05 3.68
654 655 2.092807 AGATTGCCAAATCATTTGCCCC 60.093 45.455 4.40 0.00 44.05 5.80
659 660 2.618559 GCCAAATCATTTGCCCCAACAT 60.619 45.455 4.40 0.00 39.31 2.71
663 664 0.321021 TCATTTGCCCCAACATGTGC 59.679 50.000 0.00 0.00 0.00 4.57
688 689 4.269603 CACAGTGTCTGTTCAAGAGTCAAG 59.730 45.833 0.00 0.00 42.59 3.02
695 696 4.516698 TCTGTTCAAGAGTCAAGGATTTGC 59.483 41.667 0.00 0.00 34.21 3.68
698 699 3.415212 TCAAGAGTCAAGGATTTGCAGG 58.585 45.455 0.00 0.00 34.21 4.85
699 700 2.490903 CAAGAGTCAAGGATTTGCAGGG 59.509 50.000 0.00 0.00 34.21 4.45
708 723 1.963515 GGATTTGCAGGGACAAACAGT 59.036 47.619 0.00 0.00 42.01 3.55
732 747 0.890683 GGTCATGCCTGGGACAAAAG 59.109 55.000 0.00 0.00 38.70 2.27
733 748 1.620822 GTCATGCCTGGGACAAAAGT 58.379 50.000 0.00 0.00 38.70 2.66
780 803 4.552355 TCATACCAACAACAGACACTACG 58.448 43.478 0.00 0.00 0.00 3.51
785 808 3.734231 CCAACAACAGACACTACGTACAG 59.266 47.826 0.00 0.00 0.00 2.74
786 809 3.637998 ACAACAGACACTACGTACAGG 57.362 47.619 0.00 0.00 0.00 4.00
787 810 2.954318 ACAACAGACACTACGTACAGGT 59.046 45.455 0.00 0.00 0.00 4.00
788 811 3.382546 ACAACAGACACTACGTACAGGTT 59.617 43.478 0.00 0.00 0.00 3.50
789 812 4.580167 ACAACAGACACTACGTACAGGTTA 59.420 41.667 0.00 0.00 0.00 2.85
794 822 6.183360 ACAGACACTACGTACAGGTTAGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
889 933 6.127925 TGTCATGTCTTTGCATCCAGATAAAC 60.128 38.462 0.00 0.00 0.00 2.01
928 974 2.759641 TAGACGACCACGCAGGGAGT 62.760 60.000 0.00 0.00 43.89 3.85
1144 1198 0.320596 TGCACATCGTGATGCACTCA 60.321 50.000 9.69 0.00 46.63 3.41
1152 1206 1.006220 TGATGCACTCAGTCGCGTT 60.006 52.632 5.77 0.00 0.00 4.84
1244 1322 0.610687 GCTCCCTCTGTGTAGCTGTT 59.389 55.000 0.00 0.00 32.18 3.16
1246 1324 1.895798 CTCCCTCTGTGTAGCTGTTCA 59.104 52.381 0.00 0.00 0.00 3.18
1300 1427 1.540267 GATCTGCACATGATCATGGCC 59.460 52.381 33.31 24.40 42.91 5.36
1342 1493 6.090358 CACTACAACTACAAGGATGTTTACCG 59.910 42.308 0.00 0.00 41.05 4.02
1343 1494 4.964593 ACAACTACAAGGATGTTTACCGT 58.035 39.130 0.00 0.00 41.05 4.83
1345 1496 5.221581 ACAACTACAAGGATGTTTACCGTCT 60.222 40.000 0.00 0.00 41.05 4.18
1346 1497 4.817517 ACTACAAGGATGTTTACCGTCTG 58.182 43.478 0.00 0.00 41.05 3.51
1347 1498 3.053831 ACAAGGATGTTTACCGTCTGG 57.946 47.619 0.00 0.00 35.91 3.86
1375 1546 0.656259 CTGAGCTTGACCATGCATCG 59.344 55.000 0.00 0.00 34.33 3.84
1379 1550 0.247814 GCTTGACCATGCATCGTTCG 60.248 55.000 0.00 0.00 0.00 3.95
1686 2882 8.519492 TTTTCAAGAAAACTTCACAAACTCAG 57.481 30.769 3.98 0.00 35.57 3.35
1738 2934 6.646240 AGAATTTCAAATATGTTTGCGCTTGT 59.354 30.769 9.73 0.11 43.47 3.16
1739 2935 6.783892 ATTTCAAATATGTTTGCGCTTGTT 57.216 29.167 9.73 0.00 43.47 2.83
1740 2936 6.595772 TTTCAAATATGTTTGCGCTTGTTT 57.404 29.167 9.73 0.00 43.47 2.83
1741 2937 5.573296 TCAAATATGTTTGCGCTTGTTTG 57.427 34.783 9.73 10.20 43.47 2.93
1744 3823 0.463620 ATGTTTGCGCTTGTTTGGGT 59.536 45.000 9.73 0.00 0.00 4.51
1753 3833 3.558006 GCGCTTGTTTGGGTTTACAAAAT 59.442 39.130 0.00 0.00 41.53 1.82
1758 3838 7.358848 CGCTTGTTTGGGTTTACAAAATATGTC 60.359 37.037 0.00 0.00 42.70 3.06
1759 3839 7.439655 GCTTGTTTGGGTTTACAAAATATGTCA 59.560 33.333 0.00 0.00 42.70 3.58
1840 4109 6.067263 TCGTGTTTTAGAAAATGTCCAAGG 57.933 37.500 0.00 0.00 0.00 3.61
1922 4198 5.237705 CGTTTGCGTTTTTCTTCACTTTTC 58.762 37.500 0.00 0.00 0.00 2.29
1923 4199 5.164138 CGTTTGCGTTTTTCTTCACTTTTCA 60.164 36.000 0.00 0.00 0.00 2.69
1927 4203 6.816377 TGCGTTTTTCTTCACTTTTCAAAAG 58.184 32.000 8.42 8.42 0.00 2.27
1928 4204 6.422400 TGCGTTTTTCTTCACTTTTCAAAAGT 59.578 30.769 9.89 9.89 0.00 2.66
1929 4205 7.042389 TGCGTTTTTCTTCACTTTTCAAAAGTT 60.042 29.630 13.09 0.00 0.00 2.66
1931 4207 9.644993 CGTTTTTCTTCACTTTTCAAAAGTTTT 57.355 25.926 13.09 0.00 0.00 2.43
1988 4264 3.688694 TTGTACCCAAAGTCGCTACAT 57.311 42.857 0.00 0.00 0.00 2.29
1991 4267 4.689071 TGTACCCAAAGTCGCTACATATG 58.311 43.478 0.00 0.00 0.00 1.78
1992 4268 3.906720 ACCCAAAGTCGCTACATATGT 57.093 42.857 13.93 13.93 0.00 2.29
1993 4269 3.793559 ACCCAAAGTCGCTACATATGTC 58.206 45.455 12.68 0.00 0.00 3.06
1994 4270 2.794910 CCCAAAGTCGCTACATATGTCG 59.205 50.000 12.68 11.07 0.00 4.35
1995 4271 3.444916 CCAAAGTCGCTACATATGTCGT 58.555 45.455 12.68 0.00 0.00 4.34
1996 4272 3.486108 CCAAAGTCGCTACATATGTCGTC 59.514 47.826 12.68 8.68 0.00 4.20
1997 4273 3.351020 AAGTCGCTACATATGTCGTCC 57.649 47.619 12.68 6.47 0.00 4.79
1998 4274 1.263484 AGTCGCTACATATGTCGTCCG 59.737 52.381 12.68 10.74 0.00 4.79
1999 4275 0.040692 TCGCTACATATGTCGTCCGC 60.041 55.000 12.68 7.63 0.00 5.54
2002 4278 2.159558 CGCTACATATGTCGTCCGCTAT 60.160 50.000 12.68 0.00 0.00 2.97
2006 4282 5.391736 GCTACATATGTCGTCCGCTATAGTT 60.392 44.000 12.68 0.00 0.00 2.24
2023 4299 0.388649 GTTCCGAGTGTCATCTGCGT 60.389 55.000 0.00 0.00 0.00 5.24
2039 4315 2.037847 GTTGGAATGGGCCTGGCT 59.962 61.111 19.68 0.00 0.00 4.75
2041 4317 0.324275 GTTGGAATGGGCCTGGCTTA 60.324 55.000 19.68 8.27 0.00 3.09
2044 4320 0.466372 GGAATGGGCCTGGCTTAGTC 60.466 60.000 19.68 15.31 0.00 2.59
2047 4323 3.400054 GGGCCTGGCTTAGTCGGT 61.400 66.667 19.68 0.00 0.00 4.69
2048 4324 2.125106 GGCCTGGCTTAGTCGGTG 60.125 66.667 19.68 0.00 0.00 4.94
2050 4326 2.584608 CCTGGCTTAGTCGGTGGG 59.415 66.667 0.00 0.00 0.00 4.61
2067 4343 1.098712 GGGTCACCTGTGCGAAACAA 61.099 55.000 0.00 0.00 38.67 2.83
2076 4352 4.457603 ACCTGTGCGAAACAATAGCAAATA 59.542 37.500 0.00 0.00 42.93 1.40
2080 4356 4.723862 GTGCGAAACAATAGCAAATAGACG 59.276 41.667 0.00 0.00 42.93 4.18
2082 4358 4.726591 GCGAAACAATAGCAAATAGACGCA 60.727 41.667 0.00 0.00 40.63 5.24
2083 4359 5.501715 CGAAACAATAGCAAATAGACGCAT 58.498 37.500 0.00 0.00 0.00 4.73
2088 4364 2.698855 AGCAAATAGACGCATGGAGT 57.301 45.000 0.00 0.00 0.00 3.85
2136 4413 2.287009 CCTGCTCCGAACAAAACACTTC 60.287 50.000 0.00 0.00 0.00 3.01
2143 4439 3.302480 CCGAACAAAACACTTCTGAGTCG 60.302 47.826 0.00 0.00 32.54 4.18
2157 4453 2.589442 GTCGGAAACCCACGCACA 60.589 61.111 0.00 0.00 0.00 4.57
2158 4454 1.964373 GTCGGAAACCCACGCACAT 60.964 57.895 0.00 0.00 0.00 3.21
2159 4455 1.669760 TCGGAAACCCACGCACATC 60.670 57.895 0.00 0.00 0.00 3.06
2160 4456 2.867472 GGAAACCCACGCACATCG 59.133 61.111 0.00 0.00 45.38 3.84
2161 4457 1.669760 GGAAACCCACGCACATCGA 60.670 57.895 0.00 0.00 41.67 3.59
2162 4458 1.495951 GAAACCCACGCACATCGAC 59.504 57.895 0.00 0.00 41.67 4.20
2163 4459 0.949105 GAAACCCACGCACATCGACT 60.949 55.000 0.00 0.00 41.67 4.18
2167 4463 1.212751 CCACGCACATCGACTGAGA 59.787 57.895 3.12 0.00 41.67 3.27
2169 4465 0.109551 CACGCACATCGACTGAGAGT 60.110 55.000 3.12 0.70 41.67 3.24
2198 4494 2.048222 CGCGGAGAACAAGGCTCA 60.048 61.111 0.00 0.00 34.07 4.26
2199 4495 2.097038 CGCGGAGAACAAGGCTCAG 61.097 63.158 0.00 0.00 34.07 3.35
2200 4496 1.293498 GCGGAGAACAAGGCTCAGA 59.707 57.895 0.00 0.00 34.07 3.27
2202 4498 0.318441 CGGAGAACAAGGCTCAGACA 59.682 55.000 0.00 0.00 34.07 3.41
2204 4500 2.147150 GGAGAACAAGGCTCAGACAAC 58.853 52.381 0.00 0.00 34.07 3.32
2227 4523 1.764454 GAGAGAGGGGGAGGGCTTC 60.764 68.421 0.00 0.00 0.00 3.86
2228 4524 2.250635 GAGAGAGGGGGAGGGCTTCT 62.251 65.000 0.00 0.00 0.00 2.85
2229 4525 0.931757 AGAGAGGGGGAGGGCTTCTA 60.932 60.000 0.00 0.00 0.00 2.10
2231 4527 1.232461 AGAGGGGGAGGGCTTCTACT 61.232 60.000 0.00 0.00 0.00 2.57
2275 4571 4.939052 TTTCCTTTTTCCCATTTGCGTA 57.061 36.364 0.00 0.00 0.00 4.42
2278 4574 5.476091 TCCTTTTTCCCATTTGCGTATTT 57.524 34.783 0.00 0.00 0.00 1.40
2282 4578 8.750298 TCCTTTTTCCCATTTGCGTATTTATTA 58.250 29.630 0.00 0.00 0.00 0.98
2410 4706 2.203877 TGGTCCCTACGGTTGGCT 60.204 61.111 2.87 0.00 0.00 4.75
2420 5546 0.396556 ACGGTTGGCTCCACCTTTTT 60.397 50.000 0.00 0.00 40.22 1.94
2440 5566 4.050313 TGAGAATCACCGGGGGAG 57.950 61.111 2.42 0.00 42.56 4.30
2443 5569 1.383248 AGAATCACCGGGGGAGGAG 60.383 63.158 2.42 0.00 34.73 3.69
2446 5572 3.698263 ATCACCGGGGGAGGAGTCC 62.698 68.421 2.42 0.00 43.05 3.85
2464 5874 5.799213 GAGTCCCTCCACCTGAATATATTG 58.201 45.833 1.78 0.00 0.00 1.90
2467 5877 4.287067 TCCCTCCACCTGAATATATTGCTC 59.713 45.833 1.78 0.00 0.00 4.26
2468 5878 4.042062 CCCTCCACCTGAATATATTGCTCA 59.958 45.833 1.78 0.00 0.00 4.26
2471 5881 6.206243 CCTCCACCTGAATATATTGCTCAAAG 59.794 42.308 1.78 0.00 0.00 2.77
2472 5882 6.662755 TCCACCTGAATATATTGCTCAAAGT 58.337 36.000 1.78 0.00 0.00 2.66
2473 5883 6.543465 TCCACCTGAATATATTGCTCAAAGTG 59.457 38.462 1.78 5.90 0.00 3.16
2479 5889 7.003482 TGAATATATTGCTCAAAGTGGCCATA 58.997 34.615 9.72 0.00 0.00 2.74
2483 5893 1.477700 TGCTCAAAGTGGCCATAATGC 59.522 47.619 9.72 10.02 0.00 3.56
2491 5901 1.302832 GGCCATAATGCCGGGAGAG 60.303 63.158 2.18 0.00 42.54 3.20
2492 5902 1.451936 GCCATAATGCCGGGAGAGT 59.548 57.895 2.18 0.00 0.00 3.24
2493 5903 0.886490 GCCATAATGCCGGGAGAGTG 60.886 60.000 2.18 0.00 0.00 3.51
2494 5904 0.758734 CCATAATGCCGGGAGAGTGA 59.241 55.000 2.18 0.00 0.00 3.41
2495 5905 1.349026 CCATAATGCCGGGAGAGTGAT 59.651 52.381 2.18 0.00 0.00 3.06
2496 5906 2.613977 CCATAATGCCGGGAGAGTGATC 60.614 54.545 2.18 0.00 0.00 2.92
2498 5908 0.982852 AATGCCGGGAGAGTGATCCA 60.983 55.000 2.18 0.00 41.52 3.41
2499 5909 1.406065 ATGCCGGGAGAGTGATCCAG 61.406 60.000 2.18 0.00 41.52 3.86
2500 5910 2.060980 GCCGGGAGAGTGATCCAGT 61.061 63.158 2.18 0.00 41.52 4.00
2501 5911 1.617947 GCCGGGAGAGTGATCCAGTT 61.618 60.000 2.18 0.00 41.52 3.16
2502 5912 0.905357 CCGGGAGAGTGATCCAGTTT 59.095 55.000 0.00 0.00 41.52 2.66
2503 5913 2.108168 CCGGGAGAGTGATCCAGTTTA 58.892 52.381 0.00 0.00 41.52 2.01
2504 5914 2.700897 CCGGGAGAGTGATCCAGTTTAT 59.299 50.000 0.00 0.00 41.52 1.40
2505 5915 3.895656 CCGGGAGAGTGATCCAGTTTATA 59.104 47.826 0.00 0.00 41.52 0.98
2507 5917 5.509840 CCGGGAGAGTGATCCAGTTTATAAG 60.510 48.000 0.00 0.00 41.52 1.73
2508 5918 5.509840 CGGGAGAGTGATCCAGTTTATAAGG 60.510 48.000 0.00 0.00 41.52 2.69
2509 5919 5.602978 GGGAGAGTGATCCAGTTTATAAGGA 59.397 44.000 0.00 0.00 41.52 3.36
2511 5921 7.365652 GGGAGAGTGATCCAGTTTATAAGGAAA 60.366 40.741 0.00 0.00 41.52 3.13
2512 5922 8.047310 GGAGAGTGATCCAGTTTATAAGGAAAA 58.953 37.037 0.00 0.00 39.34 2.29
2513 5923 8.794335 AGAGTGATCCAGTTTATAAGGAAAAC 57.206 34.615 0.00 0.00 37.14 2.43
2514 5924 7.829706 AGAGTGATCCAGTTTATAAGGAAAACC 59.170 37.037 0.00 0.00 37.51 3.27
2515 5925 6.598064 AGTGATCCAGTTTATAAGGAAAACCG 59.402 38.462 0.00 0.00 37.51 4.44
2516 5926 5.883673 TGATCCAGTTTATAAGGAAAACCGG 59.116 40.000 0.00 0.00 37.51 5.28
2519 5929 4.397103 CCAGTTTATAAGGAAAACCGGGTC 59.603 45.833 6.32 0.00 37.51 4.46
2520 5930 5.005094 CAGTTTATAAGGAAAACCGGGTCA 58.995 41.667 6.32 0.00 37.51 4.02
2521 5931 5.474189 CAGTTTATAAGGAAAACCGGGTCAA 59.526 40.000 6.32 0.00 37.51 3.18
2522 5932 6.016108 CAGTTTATAAGGAAAACCGGGTCAAA 60.016 38.462 6.32 0.00 37.51 2.69
2523 5933 6.550481 AGTTTATAAGGAAAACCGGGTCAAAA 59.450 34.615 6.32 0.00 37.51 2.44
2524 5934 6.973460 TTATAAGGAAAACCGGGTCAAAAA 57.027 33.333 6.32 0.00 0.00 1.94
2542 5952 8.172484 GGTCAAAAACCTTAACAACAAATTGAC 58.828 33.333 0.00 0.00 45.45 3.18
2545 5955 4.948341 ACCTTAACAACAAATTGACCCC 57.052 40.909 0.00 0.00 39.30 4.95
2546 5956 3.319689 ACCTTAACAACAAATTGACCCCG 59.680 43.478 0.00 0.00 39.30 5.73
2547 5957 3.319689 CCTTAACAACAAATTGACCCCGT 59.680 43.478 0.00 0.00 39.30 5.28
2549 5959 3.897141 AACAACAAATTGACCCCGTTT 57.103 38.095 0.00 0.00 39.30 3.60
2550 5960 6.461110 TTAACAACAAATTGACCCCGTTTA 57.539 33.333 0.00 0.00 39.30 2.01
2551 5961 5.538849 AACAACAAATTGACCCCGTTTAT 57.461 34.783 0.00 0.00 39.30 1.40
2552 5962 4.877282 ACAACAAATTGACCCCGTTTATG 58.123 39.130 0.00 0.00 39.30 1.90
2553 5963 4.585162 ACAACAAATTGACCCCGTTTATGA 59.415 37.500 0.00 0.00 39.30 2.15
2554 5964 5.160641 CAACAAATTGACCCCGTTTATGAG 58.839 41.667 0.00 0.00 38.15 2.90
2555 5965 3.761752 ACAAATTGACCCCGTTTATGAGG 59.238 43.478 0.00 0.00 0.00 3.86
2556 5966 4.013728 CAAATTGACCCCGTTTATGAGGA 58.986 43.478 0.00 0.00 0.00 3.71
2558 5968 3.791953 TTGACCCCGTTTATGAGGAAA 57.208 42.857 0.00 0.00 0.00 3.13
2560 5970 4.101645 TGACCCCGTTTATGAGGAAAAA 57.898 40.909 0.00 0.00 0.00 1.94
2561 5971 3.822167 TGACCCCGTTTATGAGGAAAAAC 59.178 43.478 0.00 0.00 33.26 2.43
2569 5979 0.250989 ATGAGGAAAAACGGGCCGAA 60.251 50.000 35.78 6.23 0.00 4.30
2579 5989 1.894756 CGGGCCGAAAACCAGACAA 60.895 57.895 24.41 0.00 0.00 3.18
2581 5991 0.822121 GGGCCGAAAACCAGACAAGT 60.822 55.000 0.00 0.00 0.00 3.16
2583 5993 2.223745 GGCCGAAAACCAGACAAGTAA 58.776 47.619 0.00 0.00 0.00 2.24
2584 5994 2.031420 GGCCGAAAACCAGACAAGTAAC 60.031 50.000 0.00 0.00 0.00 2.50
2587 5997 4.788521 GCCGAAAACCAGACAAGTAACAAG 60.789 45.833 0.00 0.00 0.00 3.16
2589 5999 5.263185 CGAAAACCAGACAAGTAACAAGTG 58.737 41.667 0.00 0.00 0.00 3.16
2592 6002 7.413219 CGAAAACCAGACAAGTAACAAGTGTTA 60.413 37.037 0.00 0.00 39.31 2.41
2606 6016 5.368989 ACAAGTGTTACAAGGAAAGGAGAG 58.631 41.667 0.00 0.00 0.00 3.20
2607 6017 4.625607 AGTGTTACAAGGAAAGGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
2610 6020 4.755629 GTGTTACAAGGAAAGGAGAGGAAC 59.244 45.833 0.00 0.00 0.00 3.62
2612 6022 3.778954 ACAAGGAAAGGAGAGGAACAG 57.221 47.619 0.00 0.00 0.00 3.16
2613 6023 2.373502 ACAAGGAAAGGAGAGGAACAGG 59.626 50.000 0.00 0.00 0.00 4.00
2615 6025 2.261729 AGGAAAGGAGAGGAACAGGAC 58.738 52.381 0.00 0.00 0.00 3.85
2619 6281 2.579738 GAGAGGAACAGGACGCCC 59.420 66.667 0.00 0.00 0.00 6.13
2621 6283 1.827399 GAGAGGAACAGGACGCCCAA 61.827 60.000 0.00 0.00 33.88 4.12
2627 6289 1.737793 GAACAGGACGCCCAACATAAG 59.262 52.381 0.00 0.00 33.88 1.73
2628 6290 0.035439 ACAGGACGCCCAACATAAGG 60.035 55.000 0.00 0.00 33.88 2.69
2651 6313 6.391537 GGCAAGACCTATCTAGCATACTAAC 58.608 44.000 0.00 0.00 33.57 2.34
2654 6316 7.598278 CAAGACCTATCTAGCATACTAACAGG 58.402 42.308 0.00 0.00 33.57 4.00
2655 6317 7.092748 AGACCTATCTAGCATACTAACAGGA 57.907 40.000 0.00 0.00 31.46 3.86
2656 6318 6.943718 AGACCTATCTAGCATACTAACAGGAC 59.056 42.308 0.00 0.00 31.46 3.85
2658 6320 6.010850 CCTATCTAGCATACTAACAGGACCA 58.989 44.000 0.00 0.00 0.00 4.02
2659 6321 6.151985 CCTATCTAGCATACTAACAGGACCAG 59.848 46.154 0.00 0.00 0.00 4.00
2660 6322 4.215908 TCTAGCATACTAACAGGACCAGG 58.784 47.826 0.00 0.00 0.00 4.45
2662 6324 3.990369 AGCATACTAACAGGACCAGGTA 58.010 45.455 0.00 0.00 0.00 3.08
2663 6325 3.961408 AGCATACTAACAGGACCAGGTAG 59.039 47.826 7.40 7.40 0.00 3.18
2667 6329 4.332683 ACTAACAGGACCAGGTAGATGA 57.667 45.455 15.44 0.00 0.00 2.92
2668 6330 4.282496 ACTAACAGGACCAGGTAGATGAG 58.718 47.826 15.44 0.00 0.00 2.90
2669 6331 2.166907 ACAGGACCAGGTAGATGAGG 57.833 55.000 0.00 0.00 0.00 3.86
2670 6332 1.343478 ACAGGACCAGGTAGATGAGGG 60.343 57.143 0.00 0.00 0.00 4.30
2672 6334 0.031010 GGACCAGGTAGATGAGGGGT 60.031 60.000 0.00 0.00 0.00 4.95
2673 6335 1.123928 GACCAGGTAGATGAGGGGTG 58.876 60.000 0.00 0.00 0.00 4.61
2674 6336 0.983378 ACCAGGTAGATGAGGGGTGC 60.983 60.000 0.00 0.00 0.00 5.01
2676 6338 1.001760 AGGTAGATGAGGGGTGCGT 59.998 57.895 0.00 0.00 0.00 5.24
2677 6339 1.043673 AGGTAGATGAGGGGTGCGTC 61.044 60.000 0.00 0.00 0.00 5.19
2678 6340 1.065928 GTAGATGAGGGGTGCGTCG 59.934 63.158 0.00 0.00 0.00 5.12
2679 6341 1.077285 TAGATGAGGGGTGCGTCGA 60.077 57.895 0.00 0.00 0.00 4.20
2680 6342 0.681887 TAGATGAGGGGTGCGTCGAA 60.682 55.000 0.00 0.00 0.00 3.71
2681 6343 1.519455 GATGAGGGGTGCGTCGAAG 60.519 63.158 0.00 0.00 0.00 3.79
2682 6344 2.907897 GATGAGGGGTGCGTCGAAGG 62.908 65.000 0.00 0.00 0.00 3.46
2683 6345 3.379445 GAGGGGTGCGTCGAAGGA 61.379 66.667 0.00 0.00 0.00 3.36
2684 6346 2.683933 AGGGGTGCGTCGAAGGAT 60.684 61.111 0.00 0.00 0.00 3.24
2685 6347 2.202892 GGGGTGCGTCGAAGGATC 60.203 66.667 0.00 0.00 0.00 3.36
2686 6348 2.577059 GGGTGCGTCGAAGGATCA 59.423 61.111 5.40 0.00 0.00 2.92
2688 6350 1.080093 GGTGCGTCGAAGGATCACA 60.080 57.895 0.00 0.00 33.12 3.58
2689 6351 0.669318 GGTGCGTCGAAGGATCACAA 60.669 55.000 0.00 0.00 33.12 3.33
2690 6352 1.359848 GTGCGTCGAAGGATCACAAT 58.640 50.000 0.00 0.00 32.32 2.71
2691 6353 2.536365 GTGCGTCGAAGGATCACAATA 58.464 47.619 0.00 0.00 32.32 1.90
2692 6354 2.281762 GTGCGTCGAAGGATCACAATAC 59.718 50.000 0.00 0.00 32.32 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.128919 AGTCTGATTAATGAAGGCATCACC 58.871 41.667 0.00 0.00 41.93 4.02
14 15 7.572724 GCATAGTCTGATTAATGAAGGCATCAC 60.573 40.741 0.00 0.00 41.93 3.06
15 16 6.429078 GCATAGTCTGATTAATGAAGGCATCA 59.571 38.462 0.00 0.00 43.67 3.07
16 17 6.654161 AGCATAGTCTGATTAATGAAGGCATC 59.346 38.462 0.00 0.00 32.35 3.91
24 25 7.936950 TCGAGAAAGCATAGTCTGATTAATG 57.063 36.000 0.00 0.00 30.63 1.90
72 73 4.572985 TTTGTTGAGATGGCACTTTCTG 57.427 40.909 0.00 0.00 0.00 3.02
73 74 4.202151 GGTTTTGTTGAGATGGCACTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
74 75 4.051237 GGTTTTGTTGAGATGGCACTTTC 58.949 43.478 0.00 0.00 0.00 2.62
128 129 7.766278 CCTGGTGTAGATAGAATAATACATGGC 59.234 40.741 0.00 0.00 32.01 4.40
136 137 6.670464 TGGTCAACCTGGTGTAGATAGAATAA 59.330 38.462 0.00 0.00 36.82 1.40
146 147 4.534500 AGACATTATGGTCAACCTGGTGTA 59.466 41.667 0.00 0.00 40.29 2.90
147 148 3.330701 AGACATTATGGTCAACCTGGTGT 59.669 43.478 0.00 1.02 40.29 4.16
148 149 3.955471 AGACATTATGGTCAACCTGGTG 58.045 45.455 0.00 0.00 40.29 4.17
149 150 4.567747 GGAAGACATTATGGTCAACCTGGT 60.568 45.833 0.00 0.00 40.29 4.00
150 151 3.947834 GGAAGACATTATGGTCAACCTGG 59.052 47.826 0.10 0.00 40.29 4.45
151 152 4.588899 TGGAAGACATTATGGTCAACCTG 58.411 43.478 0.10 0.00 40.29 4.00
152 153 4.927267 TGGAAGACATTATGGTCAACCT 57.073 40.909 0.10 0.00 40.29 3.50
153 154 4.339247 CCATGGAAGACATTATGGTCAACC 59.661 45.833 5.56 0.00 40.29 3.77
154 155 5.192927 TCCATGGAAGACATTATGGTCAAC 58.807 41.667 13.46 0.00 40.68 3.18
155 156 5.439721 CTCCATGGAAGACATTATGGTCAA 58.560 41.667 17.00 0.00 40.68 3.18
156 157 4.141413 CCTCCATGGAAGACATTATGGTCA 60.141 45.833 17.00 0.00 40.68 4.02
157 158 4.392940 CCTCCATGGAAGACATTATGGTC 58.607 47.826 17.00 0.00 40.68 4.02
158 159 3.435601 GCCTCCATGGAAGACATTATGGT 60.436 47.826 17.00 0.00 40.68 3.55
159 160 3.152341 GCCTCCATGGAAGACATTATGG 58.848 50.000 17.00 11.03 37.84 2.74
160 161 3.819337 CTGCCTCCATGGAAGACATTATG 59.181 47.826 17.00 0.03 44.79 1.90
161 162 3.181436 CCTGCCTCCATGGAAGACATTAT 60.181 47.826 17.00 0.00 44.79 1.28
162 163 2.173356 CCTGCCTCCATGGAAGACATTA 59.827 50.000 17.00 0.00 44.79 1.90
163 164 1.064166 CCTGCCTCCATGGAAGACATT 60.064 52.381 17.00 0.00 44.79 2.71
164 165 0.549950 CCTGCCTCCATGGAAGACAT 59.450 55.000 17.00 0.00 44.79 3.06
165 166 0.547471 TCCTGCCTCCATGGAAGACA 60.547 55.000 17.00 12.77 44.79 3.41
166 167 0.179936 CTCCTGCCTCCATGGAAGAC 59.820 60.000 17.00 8.58 44.79 3.01
167 168 0.252881 ACTCCTGCCTCCATGGAAGA 60.253 55.000 17.00 6.88 44.79 2.87
168 169 0.107312 CACTCCTGCCTCCATGGAAG 60.107 60.000 17.00 11.38 41.44 3.46
169 170 1.993653 CACTCCTGCCTCCATGGAA 59.006 57.895 17.00 0.00 38.35 3.53
170 171 2.673200 GCACTCCTGCCTCCATGGA 61.673 63.158 15.27 15.27 37.45 3.41
171 172 2.124403 GCACTCCTGCCTCCATGG 60.124 66.667 4.97 4.97 37.45 3.66
172 173 2.321263 ATCGCACTCCTGCCTCCATG 62.321 60.000 0.00 0.00 40.73 3.66
173 174 0.760567 TATCGCACTCCTGCCTCCAT 60.761 55.000 0.00 0.00 40.73 3.41
174 175 1.381191 TATCGCACTCCTGCCTCCA 60.381 57.895 0.00 0.00 40.73 3.86
190 191 8.898761 TGTCTTTGTTTGAACACTTGTATGTAT 58.101 29.630 0.00 0.00 38.92 2.29
210 211 1.620822 GTTGGCCCTGACATGTCTTT 58.379 50.000 25.55 0.00 0.00 2.52
240 241 3.445805 TGTCATGTCCGATGTAACTGCTA 59.554 43.478 0.00 0.00 0.00 3.49
254 255 6.037726 TGCTAATCATTTGCATTGTCATGTC 58.962 36.000 2.03 0.00 32.28 3.06
255 256 5.968254 TGCTAATCATTTGCATTGTCATGT 58.032 33.333 2.03 0.00 32.28 3.21
256 257 5.051039 GCTGCTAATCATTTGCATTGTCATG 60.051 40.000 6.97 0.00 36.07 3.07
257 258 5.047847 GCTGCTAATCATTTGCATTGTCAT 58.952 37.500 6.97 0.00 36.07 3.06
258 259 4.082136 TGCTGCTAATCATTTGCATTGTCA 60.082 37.500 6.97 1.53 36.07 3.58
259 260 4.426416 TGCTGCTAATCATTTGCATTGTC 58.574 39.130 6.97 0.00 36.07 3.18
261 262 4.260212 GCTTGCTGCTAATCATTTGCATTG 60.260 41.667 6.97 0.00 38.95 2.82
262 263 3.869246 GCTTGCTGCTAATCATTTGCATT 59.131 39.130 6.97 0.00 38.95 3.56
264 265 2.231721 TGCTTGCTGCTAATCATTTGCA 59.768 40.909 6.34 6.34 43.37 4.08
265 266 2.883574 TGCTTGCTGCTAATCATTTGC 58.116 42.857 0.00 0.00 43.37 3.68
266 267 4.678622 TCATGCTTGCTGCTAATCATTTG 58.321 39.130 0.00 0.00 43.37 2.32
267 268 4.202121 CCTCATGCTTGCTGCTAATCATTT 60.202 41.667 0.00 0.00 43.37 2.32
270 271 2.294979 CCTCATGCTTGCTGCTAATCA 58.705 47.619 0.00 0.00 43.37 2.57
271 272 1.001597 GCCTCATGCTTGCTGCTAATC 60.002 52.381 0.00 0.00 43.37 1.75
274 275 0.746923 CTGCCTCATGCTTGCTGCTA 60.747 55.000 0.00 0.00 43.37 3.49
276 277 2.490217 CTGCCTCATGCTTGCTGC 59.510 61.111 0.00 0.00 42.00 5.25
277 278 0.963856 TTCCTGCCTCATGCTTGCTG 60.964 55.000 0.00 0.00 42.00 4.41
282 283 0.034670 GAAGGTTCCTGCCTCATGCT 60.035 55.000 0.00 0.00 42.00 3.79
283 284 0.034670 AGAAGGTTCCTGCCTCATGC 60.035 55.000 0.00 0.00 38.03 4.06
284 285 1.280133 TCAGAAGGTTCCTGCCTCATG 59.720 52.381 0.00 0.00 38.03 3.07
286 287 0.687354 GTCAGAAGGTTCCTGCCTCA 59.313 55.000 0.00 0.00 38.03 3.86
287 288 0.035915 GGTCAGAAGGTTCCTGCCTC 60.036 60.000 0.00 0.00 38.03 4.70
289 290 1.376037 CGGTCAGAAGGTTCCTGCC 60.376 63.158 0.00 0.00 0.00 4.85
291 292 1.376037 GGCGGTCAGAAGGTTCCTG 60.376 63.158 0.00 0.00 0.00 3.86
292 293 2.593956 GGGCGGTCAGAAGGTTCCT 61.594 63.158 0.00 0.00 0.00 3.36
293 294 2.046217 GGGCGGTCAGAAGGTTCC 60.046 66.667 0.00 0.00 0.00 3.62
294 295 2.046217 GGGGCGGTCAGAAGGTTC 60.046 66.667 0.00 0.00 0.00 3.62
296 297 4.974438 TGGGGGCGGTCAGAAGGT 62.974 66.667 0.00 0.00 0.00 3.50
297 298 2.893682 GATTGGGGGCGGTCAGAAGG 62.894 65.000 0.00 0.00 0.00 3.46
298 299 1.452108 GATTGGGGGCGGTCAGAAG 60.452 63.158 0.00 0.00 0.00 2.85
299 300 1.784301 TTGATTGGGGGCGGTCAGAA 61.784 55.000 0.00 0.00 0.00 3.02
300 301 2.227757 TTGATTGGGGGCGGTCAGA 61.228 57.895 0.00 0.00 0.00 3.27
303 304 3.131478 CGTTGATTGGGGGCGGTC 61.131 66.667 0.00 0.00 0.00 4.79
304 305 3.622060 CTCGTTGATTGGGGGCGGT 62.622 63.158 0.00 0.00 0.00 5.68
305 306 2.824041 CTCGTTGATTGGGGGCGG 60.824 66.667 0.00 0.00 0.00 6.13
306 307 3.508840 GCTCGTTGATTGGGGGCG 61.509 66.667 0.00 0.00 0.00 6.13
307 308 0.465460 TATGCTCGTTGATTGGGGGC 60.465 55.000 0.00 0.00 0.00 5.80
310 311 1.330521 CGGTTATGCTCGTTGATTGGG 59.669 52.381 0.00 0.00 0.00 4.12
313 314 1.396996 GTGCGGTTATGCTCGTTGATT 59.603 47.619 0.00 0.00 35.36 2.57
314 315 1.006832 GTGCGGTTATGCTCGTTGAT 58.993 50.000 0.00 0.00 35.36 2.57
315 316 0.319986 TGTGCGGTTATGCTCGTTGA 60.320 50.000 0.00 0.00 35.36 3.18
316 317 0.515127 TTGTGCGGTTATGCTCGTTG 59.485 50.000 0.00 0.00 35.36 4.10
318 319 1.448985 AATTGTGCGGTTATGCTCGT 58.551 45.000 0.00 0.00 35.36 4.18
319 320 3.181515 TGTTAATTGTGCGGTTATGCTCG 60.182 43.478 0.00 0.00 35.36 5.03
320 321 4.349663 TGTTAATTGTGCGGTTATGCTC 57.650 40.909 0.00 0.00 35.36 4.26
322 323 3.303229 GCTTGTTAATTGTGCGGTTATGC 59.697 43.478 0.00 0.00 0.00 3.14
323 324 4.480541 TGCTTGTTAATTGTGCGGTTATG 58.519 39.130 0.00 0.00 0.00 1.90
325 326 4.775058 ATGCTTGTTAATTGTGCGGTTA 57.225 36.364 0.00 0.00 0.00 2.85
326 327 3.658757 ATGCTTGTTAATTGTGCGGTT 57.341 38.095 0.00 0.00 0.00 4.44
328 329 5.339177 TGATTATGCTTGTTAATTGTGCGG 58.661 37.500 0.00 0.00 0.00 5.69
329 330 6.867799 TTGATTATGCTTGTTAATTGTGCG 57.132 33.333 0.00 0.00 0.00 5.34
330 331 8.464770 TCTTTGATTATGCTTGTTAATTGTGC 57.535 30.769 0.00 0.00 0.00 4.57
360 361 9.426534 TCCAGAGTATCAATCTTTCTATGAAGA 57.573 33.333 0.00 0.00 37.57 2.87
365 366 8.814931 CCAGATCCAGAGTATCAATCTTTCTAT 58.185 37.037 0.00 0.00 37.82 1.98
367 368 6.043012 CCCAGATCCAGAGTATCAATCTTTCT 59.957 42.308 0.00 0.00 37.82 2.52
368 369 6.229733 CCCAGATCCAGAGTATCAATCTTTC 58.770 44.000 0.00 0.00 37.82 2.62
369 370 5.072872 CCCCAGATCCAGAGTATCAATCTTT 59.927 44.000 0.00 0.00 37.82 2.52
371 372 4.140591 TCCCCAGATCCAGAGTATCAATCT 60.141 45.833 0.00 0.00 37.82 2.40
372 373 4.020662 GTCCCCAGATCCAGAGTATCAATC 60.021 50.000 0.00 0.00 37.82 2.67
374 375 3.309296 GTCCCCAGATCCAGAGTATCAA 58.691 50.000 0.00 0.00 37.82 2.57
375 376 2.247372 TGTCCCCAGATCCAGAGTATCA 59.753 50.000 0.00 0.00 37.82 2.15
376 377 2.964209 TGTCCCCAGATCCAGAGTATC 58.036 52.381 0.00 0.00 0.00 2.24
377 378 3.116590 TGATGTCCCCAGATCCAGAGTAT 60.117 47.826 0.00 0.00 0.00 2.12
380 381 1.415659 GTGATGTCCCCAGATCCAGAG 59.584 57.143 0.00 0.00 0.00 3.35
382 383 1.140452 CTGTGATGTCCCCAGATCCAG 59.860 57.143 0.00 0.00 0.00 3.86
383 384 1.206878 CTGTGATGTCCCCAGATCCA 58.793 55.000 0.00 0.00 0.00 3.41
384 385 0.471617 CCTGTGATGTCCCCAGATCC 59.528 60.000 0.00 0.00 0.00 3.36
385 386 1.207791 ACCTGTGATGTCCCCAGATC 58.792 55.000 0.00 0.00 0.00 2.75
386 387 1.283029 CAACCTGTGATGTCCCCAGAT 59.717 52.381 0.00 0.00 0.00 2.90
387 388 0.692476 CAACCTGTGATGTCCCCAGA 59.308 55.000 0.00 0.00 0.00 3.86
388 389 0.322816 CCAACCTGTGATGTCCCCAG 60.323 60.000 0.00 0.00 0.00 4.45
389 390 1.767036 CCAACCTGTGATGTCCCCA 59.233 57.895 0.00 0.00 0.00 4.96
390 391 1.678970 GCCAACCTGTGATGTCCCC 60.679 63.158 0.00 0.00 0.00 4.81
391 392 0.539438 TTGCCAACCTGTGATGTCCC 60.539 55.000 0.00 0.00 0.00 4.46
392 393 0.598065 GTTGCCAACCTGTGATGTCC 59.402 55.000 0.00 0.00 0.00 4.02
403 404 2.649129 GCAGGGGATGGTTGCCAAC 61.649 63.158 0.00 0.00 36.95 3.77
404 405 2.283821 GCAGGGGATGGTTGCCAA 60.284 61.111 0.00 0.00 36.95 4.52
405 406 3.267233 AGCAGGGGATGGTTGCCA 61.267 61.111 0.00 0.00 35.67 4.92
407 408 1.000396 AAGAGCAGGGGATGGTTGC 60.000 57.895 0.00 0.00 40.53 4.17
408 409 0.329261 TGAAGAGCAGGGGATGGTTG 59.671 55.000 0.00 0.00 40.53 3.77
409 410 0.329596 GTGAAGAGCAGGGGATGGTT 59.670 55.000 0.00 0.00 40.53 3.67
410 411 0.842030 TGTGAAGAGCAGGGGATGGT 60.842 55.000 0.00 0.00 44.02 3.55
412 413 3.784511 ATATGTGAAGAGCAGGGGATG 57.215 47.619 0.00 0.00 0.00 3.51
414 415 3.898123 GAGTATATGTGAAGAGCAGGGGA 59.102 47.826 0.00 0.00 0.00 4.81
416 417 3.007398 GGGAGTATATGTGAAGAGCAGGG 59.993 52.174 0.00 0.00 0.00 4.45
417 418 3.900601 AGGGAGTATATGTGAAGAGCAGG 59.099 47.826 0.00 0.00 0.00 4.85
418 419 4.021544 GGAGGGAGTATATGTGAAGAGCAG 60.022 50.000 0.00 0.00 0.00 4.24
419 420 3.898123 GGAGGGAGTATATGTGAAGAGCA 59.102 47.826 0.00 0.00 0.00 4.26
420 421 3.898123 TGGAGGGAGTATATGTGAAGAGC 59.102 47.826 0.00 0.00 0.00 4.09
423 424 6.268617 TGAGAATGGAGGGAGTATATGTGAAG 59.731 42.308 0.00 0.00 0.00 3.02
424 425 6.143206 TGAGAATGGAGGGAGTATATGTGAA 58.857 40.000 0.00 0.00 0.00 3.18
427 428 7.639062 ATTTGAGAATGGAGGGAGTATATGT 57.361 36.000 0.00 0.00 0.00 2.29
431 432 9.398921 ACTTATATTTGAGAATGGAGGGAGTAT 57.601 33.333 0.00 0.00 0.00 2.12
432 433 8.798975 ACTTATATTTGAGAATGGAGGGAGTA 57.201 34.615 0.00 0.00 0.00 2.59
433 434 7.570607 AGACTTATATTTGAGAATGGAGGGAGT 59.429 37.037 0.00 0.00 0.00 3.85
434 435 7.972301 AGACTTATATTTGAGAATGGAGGGAG 58.028 38.462 0.00 0.00 0.00 4.30
436 437 8.986929 AAAGACTTATATTTGAGAATGGAGGG 57.013 34.615 0.00 0.00 0.00 4.30
437 438 9.844257 AGAAAGACTTATATTTGAGAATGGAGG 57.156 33.333 0.00 0.00 0.00 4.30
454 455 9.620259 AACTTGTTGAAATCTCTAGAAAGACTT 57.380 29.630 0.00 0.00 0.00 3.01
457 458 9.838339 AGAAACTTGTTGAAATCTCTAGAAAGA 57.162 29.630 0.00 0.00 0.00 2.52
466 467 7.876068 TCCGTATGTAGAAACTTGTTGAAATCT 59.124 33.333 0.00 0.00 0.00 2.40
467 468 8.025243 TCCGTATGTAGAAACTTGTTGAAATC 57.975 34.615 0.00 0.00 0.00 2.17
468 469 7.360946 GCTCCGTATGTAGAAACTTGTTGAAAT 60.361 37.037 0.00 0.00 0.00 2.17
470 471 5.407387 GCTCCGTATGTAGAAACTTGTTGAA 59.593 40.000 0.00 0.00 0.00 2.69
471 472 4.927425 GCTCCGTATGTAGAAACTTGTTGA 59.073 41.667 0.00 0.00 0.00 3.18
472 473 4.688879 TGCTCCGTATGTAGAAACTTGTTG 59.311 41.667 0.00 0.00 0.00 3.33
475 476 5.856126 TTTGCTCCGTATGTAGAAACTTG 57.144 39.130 0.00 0.00 0.00 3.16
476 477 5.107220 CGTTTTGCTCCGTATGTAGAAACTT 60.107 40.000 0.00 0.00 0.00 2.66
477 478 4.387862 CGTTTTGCTCCGTATGTAGAAACT 59.612 41.667 0.00 0.00 0.00 2.66
479 480 4.558178 TCGTTTTGCTCCGTATGTAGAAA 58.442 39.130 0.00 0.00 0.00 2.52
480 481 4.171005 CTCGTTTTGCTCCGTATGTAGAA 58.829 43.478 0.00 0.00 0.00 2.10
481 482 3.192001 ACTCGTTTTGCTCCGTATGTAGA 59.808 43.478 0.00 0.00 0.00 2.59
482 483 3.303495 CACTCGTTTTGCTCCGTATGTAG 59.697 47.826 0.00 0.00 0.00 2.74
483 484 3.057386 TCACTCGTTTTGCTCCGTATGTA 60.057 43.478 0.00 0.00 0.00 2.29
484 485 2.066262 CACTCGTTTTGCTCCGTATGT 58.934 47.619 0.00 0.00 0.00 2.29
488 489 1.798813 GATTCACTCGTTTTGCTCCGT 59.201 47.619 0.00 0.00 0.00 4.69
489 490 2.069273 AGATTCACTCGTTTTGCTCCG 58.931 47.619 0.00 0.00 0.00 4.63
492 493 4.632153 AGTGTAGATTCACTCGTTTTGCT 58.368 39.130 0.00 0.00 44.07 3.91
493 494 4.992381 AGTGTAGATTCACTCGTTTTGC 57.008 40.909 0.00 0.00 44.07 3.68
503 504 9.817809 GTGGACATATTTTAGAGTGTAGATTCA 57.182 33.333 0.00 0.00 0.00 2.57
504 505 9.817809 TGTGGACATATTTTAGAGTGTAGATTC 57.182 33.333 0.00 0.00 0.00 2.52
508 509 9.181805 CGTATGTGGACATATTTTAGAGTGTAG 57.818 37.037 2.88 0.00 40.53 2.74
509 510 8.689061 ACGTATGTGGACATATTTTAGAGTGTA 58.311 33.333 2.88 0.00 40.53 2.90
511 512 8.420374 AACGTATGTGGACATATTTTAGAGTG 57.580 34.615 2.88 0.00 40.53 3.51
512 513 7.434307 CGAACGTATGTGGACATATTTTAGAGT 59.566 37.037 2.88 0.00 40.53 3.24
515 516 7.459394 ACGAACGTATGTGGACATATTTTAG 57.541 36.000 2.88 3.43 40.53 1.85
532 533 6.774354 AAATTGACTACAACATACGAACGT 57.226 33.333 5.03 5.03 38.90 3.99
533 534 9.583530 TTTTAAATTGACTACAACATACGAACG 57.416 29.630 0.00 0.00 38.90 3.95
565 566 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
567 568 7.419865 CCCCTCCGTTCCTAAATATAAGTCTTT 60.420 40.741 0.00 0.00 0.00 2.52
568 569 6.042897 CCCCTCCGTTCCTAAATATAAGTCTT 59.957 42.308 0.00 0.00 0.00 3.01
570 571 5.279859 CCCCCTCCGTTCCTAAATATAAGTC 60.280 48.000 0.00 0.00 0.00 3.01
571 572 4.596212 CCCCCTCCGTTCCTAAATATAAGT 59.404 45.833 0.00 0.00 0.00 2.24
572 573 4.596212 ACCCCCTCCGTTCCTAAATATAAG 59.404 45.833 0.00 0.00 0.00 1.73
573 574 4.569902 ACCCCCTCCGTTCCTAAATATAA 58.430 43.478 0.00 0.00 0.00 0.98
574 575 4.217924 ACCCCCTCCGTTCCTAAATATA 57.782 45.455 0.00 0.00 0.00 0.86
576 577 2.574074 ACCCCCTCCGTTCCTAAATA 57.426 50.000 0.00 0.00 0.00 1.40
578 579 1.079323 ACTACCCCCTCCGTTCCTAAA 59.921 52.381 0.00 0.00 0.00 1.85
579 580 0.712380 ACTACCCCCTCCGTTCCTAA 59.288 55.000 0.00 0.00 0.00 2.69
580 581 1.215423 GTACTACCCCCTCCGTTCCTA 59.785 57.143 0.00 0.00 0.00 2.94
581 582 0.032714 GTACTACCCCCTCCGTTCCT 60.033 60.000 0.00 0.00 0.00 3.36
582 583 0.324645 TGTACTACCCCCTCCGTTCC 60.325 60.000 0.00 0.00 0.00 3.62
583 584 1.411612 CATGTACTACCCCCTCCGTTC 59.588 57.143 0.00 0.00 0.00 3.95
584 585 1.492764 CATGTACTACCCCCTCCGTT 58.507 55.000 0.00 0.00 0.00 4.44
585 586 0.398098 CCATGTACTACCCCCTCCGT 60.398 60.000 0.00 0.00 0.00 4.69
586 587 0.398098 ACCATGTACTACCCCCTCCG 60.398 60.000 0.00 0.00 0.00 4.63
587 588 2.323599 GTACCATGTACTACCCCCTCC 58.676 57.143 0.00 0.00 0.00 4.30
588 589 3.036452 TGTACCATGTACTACCCCCTC 57.964 52.381 6.02 0.00 0.00 4.30
589 590 3.314693 CATGTACCATGTACTACCCCCT 58.685 50.000 6.02 0.00 0.00 4.79
590 591 2.224450 GCATGTACCATGTACTACCCCC 60.224 54.545 6.13 0.00 0.00 5.40
591 592 2.436542 TGCATGTACCATGTACTACCCC 59.563 50.000 6.13 0.00 0.00 4.95
592 593 3.463944 GTGCATGTACCATGTACTACCC 58.536 50.000 15.33 0.00 32.94 3.69
593 594 3.118555 TGGTGCATGTACCATGTACTACC 60.119 47.826 29.34 15.27 45.46 3.18
594 595 4.131649 TGGTGCATGTACCATGTACTAC 57.868 45.455 29.34 3.04 45.46 2.73
603 604 0.036164 TGGTGTCTGGTGCATGTACC 59.964 55.000 24.66 24.66 41.24 3.34
604 605 1.156736 GTGGTGTCTGGTGCATGTAC 58.843 55.000 5.22 5.22 0.00 2.90
605 606 0.761802 TGTGGTGTCTGGTGCATGTA 59.238 50.000 0.00 0.00 0.00 2.29
606 607 0.535780 CTGTGGTGTCTGGTGCATGT 60.536 55.000 0.00 0.00 0.00 3.21
607 608 1.239296 CCTGTGGTGTCTGGTGCATG 61.239 60.000 0.00 0.00 0.00 4.06
608 609 1.073722 CCTGTGGTGTCTGGTGCAT 59.926 57.895 0.00 0.00 0.00 3.96
609 610 2.374525 ACCTGTGGTGTCTGGTGCA 61.375 57.895 0.00 0.00 38.04 4.57
610 611 2.510906 ACCTGTGGTGTCTGGTGC 59.489 61.111 0.00 0.00 38.04 5.01
620 621 0.883833 GCAATCTTGGACACCTGTGG 59.116 55.000 1.91 0.00 34.19 4.17
625 626 2.562298 TGATTTGGCAATCTTGGACACC 59.438 45.455 0.00 0.00 39.81 4.16
639 640 2.855209 TGTTGGGGCAAATGATTTGG 57.145 45.000 18.52 2.11 40.94 3.28
651 652 1.108727 ACTGTGTGCACATGTTGGGG 61.109 55.000 24.69 10.32 41.01 4.96
654 655 1.672363 AGACACTGTGTGCACATGTTG 59.328 47.619 24.69 20.57 41.01 3.33
659 660 1.338579 TGAACAGACACTGTGTGCACA 60.339 47.619 19.62 17.42 44.62 4.57
663 664 3.525537 ACTCTTGAACAGACACTGTGTG 58.474 45.455 19.62 7.53 44.62 3.82
688 689 1.963515 ACTGTTTGTCCCTGCAAATCC 59.036 47.619 0.00 0.00 40.01 3.01
699 700 2.154462 CATGACCTGGGACTGTTTGTC 58.846 52.381 0.00 0.00 44.63 3.18
713 728 0.890683 CTTTTGTCCCAGGCATGACC 59.109 55.000 0.00 0.00 39.61 4.02
714 729 1.620822 ACTTTTGTCCCAGGCATGAC 58.379 50.000 0.00 0.00 0.00 3.06
723 738 6.385649 TGATCTGTTTTGTACTTTTGTCCC 57.614 37.500 0.00 0.00 0.00 4.46
732 747 4.716943 GCTTCTGCTGATCTGTTTTGTAC 58.283 43.478 1.27 0.00 36.03 2.90
780 803 9.720667 ACGTTCATTTTTAAAACTAACCTGTAC 57.279 29.630 0.00 0.00 0.00 2.90
785 808 8.908678 GGATGACGTTCATTTTTAAAACTAACC 58.091 33.333 0.00 0.00 37.20 2.85
786 809 9.453325 TGGATGACGTTCATTTTTAAAACTAAC 57.547 29.630 0.00 4.93 37.20 2.34
789 812 8.934507 TTTGGATGACGTTCATTTTTAAAACT 57.065 26.923 0.00 0.00 37.20 2.66
794 822 8.788806 ACTGTATTTGGATGACGTTCATTTTTA 58.211 29.630 0.00 0.00 37.20 1.52
889 933 6.468543 GTCTATTTATAAGGCTTCAGGGAGG 58.531 44.000 1.30 0.00 0.00 4.30
1152 1206 2.819019 TGATCAAGATTTTGAAGCGCCA 59.181 40.909 2.29 0.00 45.82 5.69
1182 1257 2.683362 TCTACAGAGCCAGTCACATACG 59.317 50.000 0.00 0.00 0.00 3.06
1300 1427 3.146104 AGTGATCAAAACAGGGACCAG 57.854 47.619 0.00 0.00 0.00 4.00
1342 1493 1.277557 AGCTCAGACCATGAACCAGAC 59.722 52.381 0.00 0.00 37.52 3.51
1343 1494 1.649321 AGCTCAGACCATGAACCAGA 58.351 50.000 0.00 0.00 37.52 3.86
1345 1496 1.699083 TCAAGCTCAGACCATGAACCA 59.301 47.619 0.00 0.00 37.52 3.67
1346 1497 2.079925 GTCAAGCTCAGACCATGAACC 58.920 52.381 7.80 0.00 37.52 3.62
1367 1538 2.535984 GGAGTCTTACGAACGATGCATG 59.464 50.000 2.46 0.00 0.00 4.06
1375 1546 2.452105 GCATCGAGGAGTCTTACGAAC 58.548 52.381 0.00 4.08 38.22 3.95
1379 1550 2.427453 TGAAGGCATCGAGGAGTCTTAC 59.573 50.000 0.00 0.00 0.00 2.34
1738 2934 7.841282 TCCTGACATATTTTGTAAACCCAAA 57.159 32.000 0.00 0.00 39.18 3.28
1739 2935 7.841282 TTCCTGACATATTTTGTAAACCCAA 57.159 32.000 0.00 0.00 39.18 4.12
1740 2936 8.429237 AATTCCTGACATATTTTGTAAACCCA 57.571 30.769 0.00 0.00 39.18 4.51
1741 2937 9.366216 GAAATTCCTGACATATTTTGTAAACCC 57.634 33.333 0.00 0.00 39.18 4.11
1900 4170 6.147038 TGAAAAGTGAAGAAAAACGCAAAC 57.853 33.333 0.00 0.00 0.00 2.93
1940 4216 9.505995 AGCATTTTGTTGTTTCATTCATTTTTC 57.494 25.926 0.00 0.00 0.00 2.29
1946 4222 8.659925 ACAATAGCATTTTGTTGTTTCATTCA 57.340 26.923 0.00 0.00 33.64 2.57
1952 4228 6.821388 TGGGTACAATAGCATTTTGTTGTTT 58.179 32.000 4.58 0.00 38.26 2.83
1957 4233 6.569610 CGACTTTGGGTACAATAGCATTTTGT 60.570 38.462 0.00 4.66 40.30 2.83
1958 4234 5.799936 CGACTTTGGGTACAATAGCATTTTG 59.200 40.000 0.00 0.00 36.29 2.44
1988 4264 2.481568 CGGAACTATAGCGGACGACATA 59.518 50.000 0.00 0.00 0.00 2.29
1991 4267 0.940126 TCGGAACTATAGCGGACGAC 59.060 55.000 0.00 0.00 0.00 4.34
1992 4268 1.224075 CTCGGAACTATAGCGGACGA 58.776 55.000 0.00 4.64 0.00 4.20
1993 4269 0.942962 ACTCGGAACTATAGCGGACG 59.057 55.000 0.00 0.16 0.00 4.79
1994 4270 1.674962 ACACTCGGAACTATAGCGGAC 59.325 52.381 0.00 0.00 0.00 4.79
1995 4271 1.945394 GACACTCGGAACTATAGCGGA 59.055 52.381 0.00 0.00 0.00 5.54
1996 4272 1.674441 TGACACTCGGAACTATAGCGG 59.326 52.381 0.00 0.00 0.00 5.52
1997 4273 3.251245 AGATGACACTCGGAACTATAGCG 59.749 47.826 0.00 0.00 0.00 4.26
1998 4274 4.541779 CAGATGACACTCGGAACTATAGC 58.458 47.826 0.00 0.00 0.00 2.97
1999 4275 4.541779 GCAGATGACACTCGGAACTATAG 58.458 47.826 0.00 0.00 0.00 1.31
2002 4278 1.132453 CGCAGATGACACTCGGAACTA 59.868 52.381 0.00 0.00 0.00 2.24
2006 4282 0.388520 CAACGCAGATGACACTCGGA 60.389 55.000 0.00 0.00 29.10 4.55
2023 4299 0.033208 CTAAGCCAGGCCCATTCCAA 60.033 55.000 8.22 0.00 0.00 3.53
2047 4323 1.525077 GTTTCGCACAGGTGACCCA 60.525 57.895 0.00 0.00 32.18 4.51
2048 4324 1.098712 TTGTTTCGCACAGGTGACCC 61.099 55.000 0.00 0.00 36.48 4.46
2050 4326 2.412847 GCTATTGTTTCGCACAGGTGAC 60.413 50.000 3.10 0.00 36.48 3.67
2055 4331 5.734498 GTCTATTTGCTATTGTTTCGCACAG 59.266 40.000 0.00 0.00 36.48 3.66
2057 4333 4.723862 CGTCTATTTGCTATTGTTTCGCAC 59.276 41.667 0.00 0.00 32.71 5.34
2067 4343 4.060900 CACTCCATGCGTCTATTTGCTAT 58.939 43.478 0.00 0.00 0.00 2.97
2076 4352 0.610174 ATGTGACACTCCATGCGTCT 59.390 50.000 7.20 0.00 0.00 4.18
2080 4356 1.328680 CGCTTATGTGACACTCCATGC 59.671 52.381 7.20 4.44 0.00 4.06
2082 4358 1.208052 AGCGCTTATGTGACACTCCAT 59.792 47.619 2.64 0.00 0.00 3.41
2083 4359 0.608130 AGCGCTTATGTGACACTCCA 59.392 50.000 2.64 0.00 0.00 3.86
2088 4364 0.323302 TTGGGAGCGCTTATGTGACA 59.677 50.000 13.26 0.12 0.00 3.58
2136 4413 2.027625 GCGTGGGTTTCCGACTCAG 61.028 63.158 0.00 0.00 40.09 3.35
2143 4439 1.669760 TCGATGTGCGTGGGTTTCC 60.670 57.895 0.00 0.00 41.80 3.13
2160 4456 2.920490 GCATGAGTTTCGACTCTCAGTC 59.080 50.000 18.96 11.82 42.67 3.51
2161 4457 2.669670 CGCATGAGTTTCGACTCTCAGT 60.670 50.000 18.96 8.83 42.67 3.41
2162 4458 1.916651 CGCATGAGTTTCGACTCTCAG 59.083 52.381 18.96 13.61 42.67 3.35
2163 4459 1.982612 CGCATGAGTTTCGACTCTCA 58.017 50.000 17.27 17.27 43.38 3.27
2167 4463 2.094659 CCGCGCATGAGTTTCGACT 61.095 57.895 8.75 0.00 0.00 4.18
2169 4465 1.805539 CTCCGCGCATGAGTTTCGA 60.806 57.895 8.75 0.00 0.00 3.71
2172 4468 0.602638 TGTTCTCCGCGCATGAGTTT 60.603 50.000 19.78 0.00 0.00 2.66
2181 4477 2.048222 TGAGCCTTGTTCTCCGCG 60.048 61.111 0.00 0.00 0.00 6.46
2198 4494 1.272985 CCCCTCTCTCTCCTGTTGTCT 60.273 57.143 0.00 0.00 0.00 3.41
2199 4495 1.190643 CCCCTCTCTCTCCTGTTGTC 58.809 60.000 0.00 0.00 0.00 3.18
2200 4496 0.252467 CCCCCTCTCTCTCCTGTTGT 60.252 60.000 0.00 0.00 0.00 3.32
2202 4498 0.338120 CTCCCCCTCTCTCTCCTGTT 59.662 60.000 0.00 0.00 0.00 3.16
2204 4500 1.232792 CCTCCCCCTCTCTCTCCTG 59.767 68.421 0.00 0.00 0.00 3.86
2252 4548 4.518249 ACGCAAATGGGAAAAAGGAAAAA 58.482 34.783 4.34 0.00 0.00 1.94
2257 4553 7.841915 AATAAATACGCAAATGGGAAAAAGG 57.158 32.000 4.34 0.00 0.00 3.11
2420 5546 1.004277 CTCCCCCGGTGATTCTCAAAA 59.996 52.381 0.00 0.00 0.00 2.44
2429 5555 4.393778 GGACTCCTCCCCCGGTGA 62.394 72.222 0.00 0.00 0.00 4.02
2443 5569 4.042187 AGCAATATATTCAGGTGGAGGGAC 59.958 45.833 0.00 0.00 0.00 4.46
2446 5572 5.233083 TGAGCAATATATTCAGGTGGAGG 57.767 43.478 0.00 0.00 0.00 4.30
2447 5573 6.769822 ACTTTGAGCAATATATTCAGGTGGAG 59.230 38.462 0.00 0.00 0.00 3.86
2448 5574 6.543465 CACTTTGAGCAATATATTCAGGTGGA 59.457 38.462 0.00 0.00 0.00 4.02
2449 5575 6.238842 CCACTTTGAGCAATATATTCAGGTGG 60.239 42.308 16.68 16.68 38.66 4.61
2451 5577 5.300286 GCCACTTTGAGCAATATATTCAGGT 59.700 40.000 0.00 0.00 0.00 4.00
2454 5580 5.199723 TGGCCACTTTGAGCAATATATTCA 58.800 37.500 0.00 0.00 0.00 2.57
2455 5581 5.772825 TGGCCACTTTGAGCAATATATTC 57.227 39.130 0.00 0.00 0.00 1.75
2456 5582 7.838079 TTATGGCCACTTTGAGCAATATATT 57.162 32.000 8.16 0.00 0.00 1.28
2457 5583 7.578189 GCATTATGGCCACTTTGAGCAATATAT 60.578 37.037 8.16 0.00 0.00 0.86
2460 5870 4.202141 GCATTATGGCCACTTTGAGCAATA 60.202 41.667 8.16 0.00 0.00 1.90
2464 5874 2.214387 GCATTATGGCCACTTTGAGC 57.786 50.000 8.16 3.98 0.00 4.26
2479 5889 0.982852 TGGATCACTCTCCCGGCATT 60.983 55.000 0.00 0.00 34.12 3.56
2483 5893 0.905357 AAACTGGATCACTCTCCCGG 59.095 55.000 0.00 0.00 34.12 5.73
2485 5895 5.602978 TCCTTATAAACTGGATCACTCTCCC 59.397 44.000 0.00 0.00 34.12 4.30
2487 5897 8.884726 GTTTTCCTTATAAACTGGATCACTCTC 58.115 37.037 0.00 0.00 33.71 3.20
2489 5899 7.201617 CGGTTTTCCTTATAAACTGGATCACTC 60.202 40.741 0.00 0.00 37.92 3.51
2491 5901 6.782150 CGGTTTTCCTTATAAACTGGATCAC 58.218 40.000 0.00 0.00 37.92 3.06
2492 5902 6.995511 CGGTTTTCCTTATAAACTGGATCA 57.004 37.500 0.00 0.00 37.92 2.92
2498 5908 5.245584 TGACCCGGTTTTCCTTATAAACT 57.754 39.130 0.00 0.00 36.12 2.66
2499 5909 5.963176 TTGACCCGGTTTTCCTTATAAAC 57.037 39.130 0.00 0.00 37.95 2.01
2500 5910 6.973460 TTTTGACCCGGTTTTCCTTATAAA 57.027 33.333 0.00 0.00 37.95 1.40
2501 5911 6.239261 GGTTTTTGACCCGGTTTTCCTTATAA 60.239 38.462 0.00 0.00 43.06 0.98
2502 5912 5.243507 GGTTTTTGACCCGGTTTTCCTTATA 59.756 40.000 0.00 0.00 43.06 0.98
2503 5913 4.039488 GGTTTTTGACCCGGTTTTCCTTAT 59.961 41.667 0.00 0.00 43.06 1.73
2504 5914 3.384146 GGTTTTTGACCCGGTTTTCCTTA 59.616 43.478 0.00 0.00 43.06 2.69
2505 5915 2.168936 GGTTTTTGACCCGGTTTTCCTT 59.831 45.455 0.00 0.00 43.06 3.36
2507 5917 2.228138 GGTTTTTGACCCGGTTTTCC 57.772 50.000 0.00 0.00 43.06 3.13
2519 5929 7.414651 GGGGTCAATTTGTTGTTAAGGTTTTTG 60.415 37.037 0.00 0.00 0.00 2.44
2520 5930 6.600032 GGGGTCAATTTGTTGTTAAGGTTTTT 59.400 34.615 0.00 0.00 0.00 1.94
2521 5931 6.116806 GGGGTCAATTTGTTGTTAAGGTTTT 58.883 36.000 0.00 0.00 0.00 2.43
2522 5932 5.676552 GGGGTCAATTTGTTGTTAAGGTTT 58.323 37.500 0.00 0.00 0.00 3.27
2523 5933 4.202172 CGGGGTCAATTTGTTGTTAAGGTT 60.202 41.667 0.00 0.00 0.00 3.50
2524 5934 3.319689 CGGGGTCAATTTGTTGTTAAGGT 59.680 43.478 0.00 0.00 0.00 3.50
2526 5936 4.577834 ACGGGGTCAATTTGTTGTTAAG 57.422 40.909 0.00 0.00 0.00 1.85
2528 5938 6.264744 TCATAAACGGGGTCAATTTGTTGTTA 59.735 34.615 0.00 0.00 0.00 2.41
2529 5939 3.897141 AAACGGGGTCAATTTGTTGTT 57.103 38.095 0.00 0.00 0.00 2.83
2530 5940 4.585162 TCATAAACGGGGTCAATTTGTTGT 59.415 37.500 0.00 0.00 0.00 3.32
2531 5941 5.127693 TCATAAACGGGGTCAATTTGTTG 57.872 39.130 0.00 0.00 0.00 3.33
2532 5942 4.219725 CCTCATAAACGGGGTCAATTTGTT 59.780 41.667 0.00 0.00 0.00 2.83
2533 5943 3.761752 CCTCATAAACGGGGTCAATTTGT 59.238 43.478 0.00 0.00 0.00 2.83
2534 5944 4.013728 TCCTCATAAACGGGGTCAATTTG 58.986 43.478 0.00 0.00 0.00 2.32
2536 5946 4.310022 TTCCTCATAAACGGGGTCAATT 57.690 40.909 0.00 0.00 0.00 2.32
2539 5949 3.791953 TTTTCCTCATAAACGGGGTCA 57.208 42.857 0.00 0.00 0.00 4.02
2540 5950 4.430137 GTTTTTCCTCATAAACGGGGTC 57.570 45.455 0.00 0.00 0.00 4.46
2546 5956 2.414957 CGGCCCGTTTTTCCTCATAAAC 60.415 50.000 0.00 0.00 0.00 2.01
2547 5957 1.813786 CGGCCCGTTTTTCCTCATAAA 59.186 47.619 0.00 0.00 0.00 1.40
2549 5959 0.614294 TCGGCCCGTTTTTCCTCATA 59.386 50.000 1.63 0.00 0.00 2.15
2550 5960 0.250989 TTCGGCCCGTTTTTCCTCAT 60.251 50.000 1.63 0.00 0.00 2.90
2551 5961 0.465824 TTTCGGCCCGTTTTTCCTCA 60.466 50.000 1.63 0.00 0.00 3.86
2552 5962 0.669619 TTTTCGGCCCGTTTTTCCTC 59.330 50.000 1.63 0.00 0.00 3.71
2553 5963 0.386476 GTTTTCGGCCCGTTTTTCCT 59.614 50.000 1.63 0.00 0.00 3.36
2554 5964 0.598158 GGTTTTCGGCCCGTTTTTCC 60.598 55.000 1.63 0.00 0.00 3.13
2555 5965 0.102663 TGGTTTTCGGCCCGTTTTTC 59.897 50.000 1.63 0.00 0.00 2.29
2556 5966 0.103390 CTGGTTTTCGGCCCGTTTTT 59.897 50.000 1.63 0.00 0.00 1.94
2558 5968 1.152922 TCTGGTTTTCGGCCCGTTT 60.153 52.632 1.63 0.00 0.00 3.60
2560 5970 2.281276 GTCTGGTTTTCGGCCCGT 60.281 61.111 1.63 0.00 0.00 5.28
2561 5971 1.852067 CTTGTCTGGTTTTCGGCCCG 61.852 60.000 0.00 0.00 0.00 6.13
2562 5972 0.822121 ACTTGTCTGGTTTTCGGCCC 60.822 55.000 0.00 0.00 0.00 5.80
2563 5973 1.886886 TACTTGTCTGGTTTTCGGCC 58.113 50.000 0.00 0.00 0.00 6.13
2564 5974 2.614983 TGTTACTTGTCTGGTTTTCGGC 59.385 45.455 0.00 0.00 0.00 5.54
2565 5975 4.334481 ACTTGTTACTTGTCTGGTTTTCGG 59.666 41.667 0.00 0.00 0.00 4.30
2581 5991 6.891388 TCTCCTTTCCTTGTAACACTTGTTA 58.109 36.000 0.00 0.00 39.31 2.41
2583 5993 5.367945 TCTCCTTTCCTTGTAACACTTGT 57.632 39.130 0.00 0.00 0.00 3.16
2584 5994 4.757149 CCTCTCCTTTCCTTGTAACACTTG 59.243 45.833 0.00 0.00 0.00 3.16
2587 5997 4.618920 TCCTCTCCTTTCCTTGTAACAC 57.381 45.455 0.00 0.00 0.00 3.32
2589 5999 4.969484 TGTTCCTCTCCTTTCCTTGTAAC 58.031 43.478 0.00 0.00 0.00 2.50
2592 6002 2.373502 CCTGTTCCTCTCCTTTCCTTGT 59.626 50.000 0.00 0.00 0.00 3.16
2597 6007 1.673329 GCGTCCTGTTCCTCTCCTTTC 60.673 57.143 0.00 0.00 0.00 2.62
2600 6010 1.985116 GGCGTCCTGTTCCTCTCCT 60.985 63.158 0.00 0.00 0.00 3.69
2602 6012 1.827399 TTGGGCGTCCTGTTCCTCTC 61.827 60.000 7.97 0.00 0.00 3.20
2603 6013 1.841556 TTGGGCGTCCTGTTCCTCT 60.842 57.895 7.97 0.00 0.00 3.69
2606 6016 0.035820 TATGTTGGGCGTCCTGTTCC 60.036 55.000 7.97 0.00 0.00 3.62
2607 6017 1.737793 CTTATGTTGGGCGTCCTGTTC 59.262 52.381 7.97 0.00 0.00 3.18
2610 6020 1.376609 GCCTTATGTTGGGCGTCCTG 61.377 60.000 7.97 0.00 38.91 3.86
2612 6022 3.509659 GCCTTATGTTGGGCGTCC 58.490 61.111 0.00 0.00 38.91 4.79
2630 6292 7.449086 GTCCTGTTAGTATGCTAGATAGGTCTT 59.551 40.741 13.07 0.00 35.87 3.01
2632 6294 6.151480 GGTCCTGTTAGTATGCTAGATAGGTC 59.849 46.154 13.07 9.55 0.00 3.85
2634 6296 6.010850 TGGTCCTGTTAGTATGCTAGATAGG 58.989 44.000 0.00 9.39 0.00 2.57
2635 6297 6.151985 CCTGGTCCTGTTAGTATGCTAGATAG 59.848 46.154 0.00 0.00 0.00 2.08
2638 6300 4.215908 CCTGGTCCTGTTAGTATGCTAGA 58.784 47.826 0.00 0.00 0.00 2.43
2640 6302 3.990369 ACCTGGTCCTGTTAGTATGCTA 58.010 45.455 0.00 0.00 0.00 3.49
2647 6309 3.639094 CCTCATCTACCTGGTCCTGTTAG 59.361 52.174 0.63 0.00 0.00 2.34
2649 6311 2.472029 CCTCATCTACCTGGTCCTGTT 58.528 52.381 0.63 0.00 0.00 3.16
2651 6313 1.418334 CCCTCATCTACCTGGTCCTG 58.582 60.000 0.63 0.00 0.00 3.86
2654 6316 1.123928 CACCCCTCATCTACCTGGTC 58.876 60.000 0.63 0.00 0.00 4.02
2655 6317 0.983378 GCACCCCTCATCTACCTGGT 60.983 60.000 4.05 4.05 0.00 4.00
2656 6318 1.832912 GCACCCCTCATCTACCTGG 59.167 63.158 0.00 0.00 0.00 4.45
2658 6320 1.001760 ACGCACCCCTCATCTACCT 59.998 57.895 0.00 0.00 0.00 3.08
2659 6321 1.442148 GACGCACCCCTCATCTACC 59.558 63.158 0.00 0.00 0.00 3.18
2660 6322 1.065928 CGACGCACCCCTCATCTAC 59.934 63.158 0.00 0.00 0.00 2.59
2662 6324 1.949847 CTTCGACGCACCCCTCATCT 61.950 60.000 0.00 0.00 0.00 2.90
2663 6325 1.519455 CTTCGACGCACCCCTCATC 60.519 63.158 0.00 0.00 0.00 2.92
2667 6329 2.683933 ATCCTTCGACGCACCCCT 60.684 61.111 0.00 0.00 0.00 4.79
2668 6330 2.202892 GATCCTTCGACGCACCCC 60.203 66.667 0.00 0.00 0.00 4.95
2669 6331 1.810030 GTGATCCTTCGACGCACCC 60.810 63.158 0.00 0.00 0.00 4.61
2670 6332 0.669318 TTGTGATCCTTCGACGCACC 60.669 55.000 0.00 0.00 0.00 5.01
2672 6334 2.536365 GTATTGTGATCCTTCGACGCA 58.464 47.619 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.