Multiple sequence alignment - TraesCS7D01G015600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G015600 chr7D 100.000 5252 0 0 1 5252 6778575 6783826 0.000000e+00 9699.0
1 TraesCS7D01G015600 chr7D 81.955 1463 195 40 2789 4189 101096292 101094837 0.000000e+00 1175.0
2 TraesCS7D01G015600 chr7D 81.385 1300 234 8 1499 2794 101097654 101096359 0.000000e+00 1053.0
3 TraesCS7D01G015600 chr7D 87.195 164 16 4 1 163 194080815 194080974 1.160000e-41 182.0
4 TraesCS7D01G015600 chr7A 90.653 4622 346 33 1 4549 7764504 7769112 0.000000e+00 6063.0
5 TraesCS7D01G015600 chr7A 81.441 1471 192 44 2789 4189 103216078 103214619 0.000000e+00 1129.0
6 TraesCS7D01G015600 chr4A 90.454 3499 261 22 593 4068 733451852 733455300 0.000000e+00 4543.0
7 TraesCS7D01G015600 chr4A 91.448 3169 222 25 1355 4482 733423206 733420046 0.000000e+00 4305.0
8 TraesCS7D01G015600 chr4A 88.700 1761 140 22 1 1729 733424637 733422904 0.000000e+00 2095.0
9 TraesCS7D01G015600 chr4A 89.091 165 7 6 4445 4606 733420050 733419894 1.490000e-45 195.0
10 TraesCS7D01G015600 chr4A 92.308 104 8 0 4446 4549 733600301 733600404 1.180000e-31 148.0
11 TraesCS7D01G015600 chrUn 90.905 2430 200 8 1658 4068 339774475 339776902 0.000000e+00 3243.0
12 TraesCS7D01G015600 chrUn 90.864 2430 201 8 1658 4068 339771814 339769387 0.000000e+00 3238.0
13 TraesCS7D01G015600 chrUn 90.339 2422 182 14 593 3010 334536525 334534152 0.000000e+00 3129.0
14 TraesCS7D01G015600 chrUn 91.549 1704 142 1 1658 3361 378061079 378062780 0.000000e+00 2348.0
15 TraesCS7D01G015600 chrUn 91.131 1353 120 0 1658 3010 408507537 408506185 0.000000e+00 1834.0
16 TraesCS7D01G015600 chrUn 89.864 809 63 7 3279 4068 464059170 464058362 0.000000e+00 1022.0
17 TraesCS7D01G015600 chr7B 83.977 1061 132 23 3158 4189 57634143 57633092 0.000000e+00 983.0
18 TraesCS7D01G015600 chr7B 88.889 153 11 4 1 152 157803077 157803224 3.230000e-42 183.0
19 TraesCS7D01G015600 chr6D 84.533 375 42 5 4623 4985 306595968 306595598 1.800000e-94 357.0
20 TraesCS7D01G015600 chr6D 94.595 37 2 0 538 574 471569500 471569536 2.040000e-04 58.4
21 TraesCS7D01G015600 chr3A 81.186 388 40 16 4616 4985 737725350 737725722 1.110000e-71 281.0
22 TraesCS7D01G015600 chr3A 84.706 170 19 6 1 168 19358626 19358462 4.210000e-36 163.0
23 TraesCS7D01G015600 chr4D 86.722 241 25 4 5017 5252 96889585 96889347 1.450000e-65 261.0
24 TraesCS7D01G015600 chr4D 86.559 186 17 6 5074 5252 96697451 96697267 1.150000e-46 198.0
25 TraesCS7D01G015600 chr4D 83.902 205 22 6 5048 5252 122249469 122249276 8.980000e-43 185.0
26 TraesCS7D01G015600 chr1A 80.208 384 43 15 4620 4988 466845514 466845149 1.880000e-64 257.0
27 TraesCS7D01G015600 chr2A 78.947 361 59 8 1169 1513 761168640 761168999 4.090000e-56 230.0
28 TraesCS7D01G015600 chr2B 86.538 208 17 7 5049 5252 384096859 384096659 8.860000e-53 219.0
29 TraesCS7D01G015600 chr2B 86.667 150 14 5 6 152 24241898 24242044 1.510000e-35 161.0
30 TraesCS7D01G015600 chr2B 86.986 146 14 4 6 151 97435787 97435647 5.440000e-35 159.0
31 TraesCS7D01G015600 chr2B 83.636 165 21 5 1 163 680079901 680079741 3.280000e-32 150.0
32 TraesCS7D01G015600 chr5D 86.275 153 16 5 10 161 424074744 424074892 1.510000e-35 161.0
33 TraesCS7D01G015600 chr3D 81.915 94 16 1 481 574 579224879 579224787 1.570000e-10 78.7
34 TraesCS7D01G015600 chr1D 93.333 45 3 0 5208 5252 386938556 386938512 3.390000e-07 67.6
35 TraesCS7D01G015600 chr2D 97.297 37 1 0 538 574 12605079 12605043 4.390000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G015600 chr7D 6778575 6783826 5251 False 9699.000000 9699 100.000000 1 5252 1 chr7D.!!$F1 5251
1 TraesCS7D01G015600 chr7D 101094837 101097654 2817 True 1114.000000 1175 81.670000 1499 4189 2 chr7D.!!$R1 2690
2 TraesCS7D01G015600 chr7A 7764504 7769112 4608 False 6063.000000 6063 90.653000 1 4549 1 chr7A.!!$F1 4548
3 TraesCS7D01G015600 chr7A 103214619 103216078 1459 True 1129.000000 1129 81.441000 2789 4189 1 chr7A.!!$R1 1400
4 TraesCS7D01G015600 chr4A 733451852 733455300 3448 False 4543.000000 4543 90.454000 593 4068 1 chr4A.!!$F1 3475
5 TraesCS7D01G015600 chr4A 733419894 733424637 4743 True 2198.333333 4305 89.746333 1 4606 3 chr4A.!!$R1 4605
6 TraesCS7D01G015600 chrUn 339774475 339776902 2427 False 3243.000000 3243 90.905000 1658 4068 1 chrUn.!!$F1 2410
7 TraesCS7D01G015600 chrUn 339769387 339771814 2427 True 3238.000000 3238 90.864000 1658 4068 1 chrUn.!!$R2 2410
8 TraesCS7D01G015600 chrUn 334534152 334536525 2373 True 3129.000000 3129 90.339000 593 3010 1 chrUn.!!$R1 2417
9 TraesCS7D01G015600 chrUn 378061079 378062780 1701 False 2348.000000 2348 91.549000 1658 3361 1 chrUn.!!$F2 1703
10 TraesCS7D01G015600 chrUn 408506185 408507537 1352 True 1834.000000 1834 91.131000 1658 3010 1 chrUn.!!$R3 1352
11 TraesCS7D01G015600 chrUn 464058362 464059170 808 True 1022.000000 1022 89.864000 3279 4068 1 chrUn.!!$R4 789
12 TraesCS7D01G015600 chr7B 57633092 57634143 1051 True 983.000000 983 83.977000 3158 4189 1 chr7B.!!$R1 1031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 441 1.192428 CACACAGACCCTACCCCTAC 58.808 60.0 0.00 0.0 0.00 3.18 F
1800 1912 0.100682 GTGGAGCTCTCGCGTATTCA 59.899 55.0 14.64 0.0 42.32 2.57 F
3091 3275 0.031585 CGATGGCAATCATTGGGCTG 59.968 55.0 1.12 0.0 35.97 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 2538 0.106769 TTGTTTGAGAGGTGCAGCCA 60.107 50.0 13.29 0.04 40.61 4.75 R
3625 3847 0.249615 CGGCCATCATGTCGTCATCT 60.250 55.0 2.24 0.00 31.15 2.90 R
4880 5230 0.167689 GGTCGCGAGTTAGAACGAGT 59.832 55.0 10.24 0.00 34.83 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
331 344 7.307811 GGAAAGCATAAACATCGGTAAGATACC 60.308 40.741 0.00 0.00 45.52 2.73
412 425 9.719355 ATACACTTATTTCTATGAACACACACA 57.281 29.630 0.00 0.00 0.00 3.72
428 441 1.192428 CACACAGACCCTACCCCTAC 58.808 60.000 0.00 0.00 0.00 3.18
437 450 1.343681 CCCTACCCCTACAAGCACCTA 60.344 57.143 0.00 0.00 0.00 3.08
444 457 1.202313 CCTACAAGCACCTACGAGAGC 60.202 57.143 0.00 0.00 0.00 4.09
453 466 2.490115 CACCTACGAGAGCTTGAGAACT 59.510 50.000 0.00 0.00 0.00 3.01
460 473 4.038642 ACGAGAGCTTGAGAACTTCTTCTT 59.961 41.667 0.00 0.00 36.82 2.52
465 478 3.500299 GCTTGAGAACTTCTTCTTCCACC 59.500 47.826 0.00 0.00 36.82 4.61
506 520 7.287235 GGAGATCCTGAAATGAATCCAGAAATT 59.713 37.037 0.00 0.00 0.00 1.82
524 538 9.330063 CCAGAAATTATGTGAGCACTAGAATTA 57.670 33.333 0.00 0.00 0.00 1.40
567 581 2.225650 ACCACTGTCCTCCTAACCATCT 60.226 50.000 0.00 0.00 0.00 2.90
570 584 4.656112 CCACTGTCCTCCTAACCATCTAAT 59.344 45.833 0.00 0.00 0.00 1.73
672 686 5.455056 AGTCATACGTAGAAGGCCATAAG 57.545 43.478 5.01 0.00 0.00 1.73
1047 1066 0.955178 GCTCCGATCTGATTCCGAGA 59.045 55.000 11.49 0.00 0.00 4.04
1137 1171 5.128499 TCCTCATCTTCACATTTCTCCTCTC 59.872 44.000 0.00 0.00 0.00 3.20
1297 1337 3.121030 GCTTGCGACACGGAGCAT 61.121 61.111 0.00 0.00 43.42 3.79
1349 1389 1.882989 GCTCTCTGGCAAGGTCTCGT 61.883 60.000 0.00 0.00 0.00 4.18
1350 1390 0.605589 CTCTCTGGCAAGGTCTCGTT 59.394 55.000 0.00 0.00 0.00 3.85
1408 1448 1.071385 CTCTCTGGCAACCACTTCACT 59.929 52.381 0.00 0.00 0.00 3.41
1411 1451 0.179020 CTGGCAACCACTTCACTGGA 60.179 55.000 0.00 0.00 35.04 3.86
1456 1496 6.166982 CAACCTCTCCTACCTTAAGTTTCTG 58.833 44.000 0.97 0.00 0.00 3.02
1556 1668 2.819595 CGAACATGCTCACCCGGG 60.820 66.667 22.25 22.25 0.00 5.73
1600 1712 2.698797 CCTATCCCGCCTCAAGTTTCTA 59.301 50.000 0.00 0.00 0.00 2.10
1691 1803 0.305313 CGATCTCTCCGAGAACGTCC 59.695 60.000 13.24 0.00 45.37 4.79
1701 1813 2.679287 GAACGTCCTCTCCGGGGT 60.679 66.667 0.00 0.00 0.00 4.95
1741 1853 0.531974 AACTTTCTCGGCTGACGCAA 60.532 50.000 0.00 0.00 43.86 4.85
1754 1866 0.880278 GACGCAACTCAGCCTCAACA 60.880 55.000 0.00 0.00 0.00 3.33
1800 1912 0.100682 GTGGAGCTCTCGCGTATTCA 59.899 55.000 14.64 0.00 42.32 2.57
1808 1920 1.067846 TCTCGCGTATTCAGCACTTGT 60.068 47.619 5.77 0.00 34.19 3.16
1876 1988 3.102972 TGCTATCTTCTGCAACCTCTCT 58.897 45.455 0.00 0.00 36.15 3.10
1912 2024 7.327975 ACATTGATATGTCGTCCAACTTTCTA 58.672 34.615 0.00 0.00 41.07 2.10
1959 2071 3.003173 CCCACTCCCCGAGCTGAA 61.003 66.667 0.00 0.00 32.04 3.02
1966 2078 2.294078 CCCCGAGCTGAAGTCCCTT 61.294 63.158 0.00 0.00 0.00 3.95
2031 2143 0.671796 TCAAACTCGACGAAGCTCCA 59.328 50.000 0.00 0.00 0.00 3.86
2044 2156 1.500474 AGCTCCAATGGCTGCTACTA 58.500 50.000 15.65 0.00 38.73 1.82
2048 2160 2.432146 CTCCAATGGCTGCTACTACAGA 59.568 50.000 0.00 0.00 40.25 3.41
2159 2271 1.717194 GAACTCGCGGAACAATACCA 58.283 50.000 6.13 0.00 0.00 3.25
2257 2369 0.392998 GCACGATCCCACCTGTCATT 60.393 55.000 0.00 0.00 0.00 2.57
2426 2538 3.596066 AACATGCGGCAGCTCGAGT 62.596 57.895 15.13 0.37 45.42 4.18
2603 2715 1.067635 CCTACAACATGTTGCAAGGCC 60.068 52.381 31.85 0.00 44.03 5.19
2653 2765 1.202818 GGACTGCTCAACCTCAACCTT 60.203 52.381 0.00 0.00 0.00 3.50
2887 3071 5.824243 ACTTTTCATACAACGACTTCTCG 57.176 39.130 0.00 0.00 46.06 4.04
2968 3152 2.842462 AGACTGTGTGCGGGGACA 60.842 61.111 0.00 0.00 0.00 4.02
2990 3174 2.047274 CGATGACGCCTGGGTTGT 60.047 61.111 0.00 0.00 0.00 3.32
2992 3176 1.003839 GATGACGCCTGGGTTGTCA 60.004 57.895 15.25 15.25 45.71 3.58
3033 3217 0.037590 AACTTGCTCCATAACCGGCA 59.962 50.000 0.00 0.00 0.00 5.69
3057 3241 2.809601 GTTGCTCGTCGTCGGCAT 60.810 61.111 15.69 0.00 40.60 4.40
3091 3275 0.031585 CGATGGCAATCATTGGGCTG 59.968 55.000 1.12 0.00 35.97 4.85
3237 3459 4.933064 GTCGAGGCTGATCGGCGG 62.933 72.222 20.09 11.84 42.93 6.13
3357 3579 3.121030 CTTCAAGCGGGAGTGCGG 61.121 66.667 0.00 0.00 40.67 5.69
3451 3673 2.265739 GTGCTCCCGCTGATGACA 59.734 61.111 0.00 0.00 36.97 3.58
3639 3861 3.005261 GTGCTCCTAGATGACGACATGAT 59.995 47.826 4.80 0.00 36.82 2.45
3688 3919 1.379044 GCTGGTCAAGGACATGGGG 60.379 63.158 0.00 0.00 33.68 4.96
3715 3946 0.533755 ACAACACAGGCTCTGCTGAC 60.534 55.000 0.00 0.00 34.37 3.51
3793 4044 6.203338 CAGGTAATTTACAACACAACCGTAGT 59.797 38.462 8.73 0.00 0.00 2.73
3836 4098 8.868522 TCTTCTCTTAACATTTTCATCATGGT 57.131 30.769 0.00 0.00 0.00 3.55
4032 4308 3.928769 CACCGCCATCATCGCACG 61.929 66.667 0.00 0.00 0.00 5.34
4033 4309 4.141965 ACCGCCATCATCGCACGA 62.142 61.111 0.00 0.00 0.00 4.35
4040 4316 0.811219 CATCATCGCACGACCATGGT 60.811 55.000 19.89 19.89 0.00 3.55
4091 4367 0.802994 ACAAGCGAACAACGTCGTCA 60.803 50.000 0.00 0.00 43.06 4.35
4201 4477 3.195825 TCCTCAAGGATTCGTCTTCTTCC 59.804 47.826 0.00 0.00 39.78 3.46
4216 4492 1.000506 TCTTCCTGACGTACTTGTGGC 59.999 52.381 0.00 0.00 0.00 5.01
4234 4513 9.185680 ACTTGTGGCTACGTCATGATATATATA 57.814 33.333 0.00 0.00 0.00 0.86
4262 4559 8.361169 AGGTTACATAATAAACTTGTGGCATT 57.639 30.769 0.00 0.00 0.00 3.56
4268 4565 0.178975 AAACTTGTGGCATTCCCCGA 60.179 50.000 0.00 0.00 0.00 5.14
4269 4566 0.039618 AACTTGTGGCATTCCCCGAT 59.960 50.000 0.00 0.00 0.00 4.18
4271 4568 1.077068 TTGTGGCATTCCCCGATCC 60.077 57.895 0.00 0.00 0.00 3.36
4272 4569 1.857638 TTGTGGCATTCCCCGATCCA 61.858 55.000 0.00 0.00 0.00 3.41
4296 4594 2.961526 TGAAGATAGTCGCAGGGTTC 57.038 50.000 0.00 0.00 0.00 3.62
4297 4595 2.176045 TGAAGATAGTCGCAGGGTTCA 58.824 47.619 0.00 0.00 0.00 3.18
4316 4614 1.789576 ATGGAAAACTCGGGGGTGCT 61.790 55.000 0.00 0.00 0.00 4.40
4317 4615 1.971695 GGAAAACTCGGGGGTGCTG 60.972 63.158 0.00 0.00 0.00 4.41
4328 4627 2.048127 GGTGCTGGACGTGAGGAC 60.048 66.667 0.00 0.00 0.00 3.85
4333 4632 0.530744 GCTGGACGTGAGGACATGTA 59.469 55.000 0.00 0.00 44.92 2.29
4348 4647 7.062749 AGGACATGTACAAGTAACAAGAAGA 57.937 36.000 11.55 0.00 0.00 2.87
4353 4652 4.743151 TGTACAAGTAACAAGAAGACAGCG 59.257 41.667 0.00 0.00 0.00 5.18
4380 4679 1.136500 GCAAGGGAGTACGGGTTAGAG 59.864 57.143 0.00 0.00 0.00 2.43
4384 4683 2.311243 AGGGAGTACGGGTTAGAGACTT 59.689 50.000 0.00 0.00 0.00 3.01
4385 4684 3.525199 AGGGAGTACGGGTTAGAGACTTA 59.475 47.826 0.00 0.00 0.00 2.24
4443 4757 9.468532 GTATCTTATAGTTAAACTGTTACCCCG 57.531 37.037 0.00 0.00 0.00 5.73
4444 4758 6.877236 TCTTATAGTTAAACTGTTACCCCGG 58.123 40.000 0.00 0.00 0.00 5.73
4498 4846 0.237235 CGGTGGTGTTTTCGGTCATG 59.763 55.000 0.00 0.00 0.00 3.07
4500 4848 0.596082 GTGGTGTTTTCGGTCATGGG 59.404 55.000 0.00 0.00 0.00 4.00
4518 4866 1.014564 GGTCTACGGTGCTGCAACTC 61.015 60.000 16.61 2.61 0.00 3.01
4534 4882 2.414058 ACTCGATAAGCAGCAGATCG 57.586 50.000 18.35 18.35 42.96 3.69
4535 4883 1.950216 ACTCGATAAGCAGCAGATCGA 59.050 47.619 23.01 23.01 46.71 3.59
4541 4889 2.861462 AAGCAGCAGATCGAGTAGTC 57.139 50.000 0.00 0.00 0.00 2.59
4596 4946 5.399604 CGAAGTGTAAAAAGTTTCGTCCT 57.600 39.130 0.00 0.00 36.73 3.85
4609 4959 6.701432 AGTTTCGTCCTTAACTTTATGTCG 57.299 37.500 0.00 0.00 30.72 4.35
4610 4960 5.119743 AGTTTCGTCCTTAACTTTATGTCGC 59.880 40.000 0.00 0.00 30.72 5.19
4611 4961 4.177165 TCGTCCTTAACTTTATGTCGCA 57.823 40.909 0.00 0.00 0.00 5.10
4612 4962 4.751060 TCGTCCTTAACTTTATGTCGCAT 58.249 39.130 0.00 0.00 0.00 4.73
4613 4963 4.565166 TCGTCCTTAACTTTATGTCGCATG 59.435 41.667 3.07 0.00 0.00 4.06
4614 4964 4.588278 GTCCTTAACTTTATGTCGCATGC 58.412 43.478 7.91 7.91 0.00 4.06
4615 4965 4.094294 GTCCTTAACTTTATGTCGCATGCA 59.906 41.667 19.57 1.73 0.00 3.96
4616 4966 4.332543 TCCTTAACTTTATGTCGCATGCAG 59.667 41.667 19.57 10.78 0.00 4.41
4617 4967 4.332543 CCTTAACTTTATGTCGCATGCAGA 59.667 41.667 19.57 13.08 0.00 4.26
4618 4968 5.469373 TTAACTTTATGTCGCATGCAGAG 57.531 39.130 19.57 4.74 0.00 3.35
4619 4969 2.977914 ACTTTATGTCGCATGCAGAGT 58.022 42.857 19.57 5.41 0.00 3.24
4620 4970 2.932614 ACTTTATGTCGCATGCAGAGTC 59.067 45.455 19.57 5.94 0.00 3.36
4621 4971 2.671130 TTATGTCGCATGCAGAGTCA 57.329 45.000 19.57 11.09 0.00 3.41
4622 4972 2.671130 TATGTCGCATGCAGAGTCAA 57.329 45.000 19.57 3.15 0.00 3.18
4623 4973 2.034104 ATGTCGCATGCAGAGTCAAT 57.966 45.000 19.57 5.15 0.00 2.57
4624 4974 1.812235 TGTCGCATGCAGAGTCAATT 58.188 45.000 19.57 0.00 0.00 2.32
4625 4975 2.971307 TGTCGCATGCAGAGTCAATTA 58.029 42.857 19.57 0.00 0.00 1.40
4626 4976 2.672874 TGTCGCATGCAGAGTCAATTAC 59.327 45.455 19.57 3.17 0.00 1.89
4627 4977 2.672874 GTCGCATGCAGAGTCAATTACA 59.327 45.455 19.57 0.00 0.00 2.41
4628 4978 2.672874 TCGCATGCAGAGTCAATTACAC 59.327 45.455 19.57 0.00 0.00 2.90
4629 4979 2.674852 CGCATGCAGAGTCAATTACACT 59.325 45.455 19.57 0.00 0.00 3.55
4630 4980 3.865164 CGCATGCAGAGTCAATTACACTA 59.135 43.478 19.57 0.00 0.00 2.74
4631 4981 4.259970 CGCATGCAGAGTCAATTACACTAC 60.260 45.833 19.57 0.00 0.00 2.73
4632 4982 4.872691 GCATGCAGAGTCAATTACACTACT 59.127 41.667 14.21 0.00 0.00 2.57
4633 4983 6.042777 GCATGCAGAGTCAATTACACTACTA 58.957 40.000 14.21 0.00 0.00 1.82
4634 4984 6.199908 GCATGCAGAGTCAATTACACTACTAG 59.800 42.308 14.21 0.00 0.00 2.57
4635 4985 6.835819 TGCAGAGTCAATTACACTACTAGT 57.164 37.500 0.00 0.00 0.00 2.57
4668 5018 4.808364 TGGCACAAAAGTTCACTTTAATGC 59.192 37.500 21.73 21.73 44.69 3.56
4669 5019 5.049828 GGCACAAAAGTTCACTTTAATGCT 58.950 37.500 25.33 4.91 45.94 3.79
4670 5020 6.183360 TGGCACAAAAGTTCACTTTAATGCTA 60.183 34.615 25.33 21.16 45.94 3.49
4671 5021 6.363357 GGCACAAAAGTTCACTTTAATGCTAG 59.637 38.462 25.33 11.04 45.94 3.42
4672 5022 7.138736 GCACAAAAGTTCACTTTAATGCTAGA 58.861 34.615 22.17 0.00 44.69 2.43
4673 5023 7.647715 GCACAAAAGTTCACTTTAATGCTAGAA 59.352 33.333 22.17 0.00 44.69 2.10
4674 5024 8.958043 CACAAAAGTTCACTTTAATGCTAGAAC 58.042 33.333 5.36 11.02 44.69 3.01
4675 5025 8.903820 ACAAAAGTTCACTTTAATGCTAGAACT 58.096 29.630 5.36 13.78 44.69 3.01
4697 5047 9.569167 GAACTATAAATGGTTTAAGAACTTGGC 57.431 33.333 0.00 0.00 36.03 4.52
4698 5048 8.879427 ACTATAAATGGTTTAAGAACTTGGCT 57.121 30.769 0.00 0.00 36.03 4.75
4699 5049 9.309224 ACTATAAATGGTTTAAGAACTTGGCTT 57.691 29.630 0.00 0.00 36.03 4.35
4702 5052 9.923143 ATAAATGGTTTAAGAACTTGGCTTAAC 57.077 29.630 0.00 0.00 37.50 2.01
4703 5053 5.427036 TGGTTTAAGAACTTGGCTTAACG 57.573 39.130 0.00 0.00 37.50 3.18
4704 5054 4.276431 TGGTTTAAGAACTTGGCTTAACGG 59.724 41.667 0.00 0.00 37.50 4.44
4705 5055 4.276678 GGTTTAAGAACTTGGCTTAACGGT 59.723 41.667 0.00 0.00 37.50 4.83
4706 5056 5.209977 GTTTAAGAACTTGGCTTAACGGTG 58.790 41.667 0.00 0.00 37.50 4.94
4707 5057 1.235724 AGAACTTGGCTTAACGGTGC 58.764 50.000 0.00 0.00 0.00 5.01
4708 5058 0.948678 GAACTTGGCTTAACGGTGCA 59.051 50.000 0.00 0.00 0.00 4.57
4709 5059 0.666374 AACTTGGCTTAACGGTGCAC 59.334 50.000 8.80 8.80 0.00 4.57
4710 5060 0.464735 ACTTGGCTTAACGGTGCACA 60.465 50.000 20.43 0.00 0.00 4.57
4711 5061 0.881118 CTTGGCTTAACGGTGCACAT 59.119 50.000 20.43 6.72 0.00 3.21
4712 5062 2.080693 CTTGGCTTAACGGTGCACATA 58.919 47.619 20.43 5.65 0.00 2.29
4713 5063 1.444836 TGGCTTAACGGTGCACATAC 58.555 50.000 20.43 0.00 0.00 2.39
4714 5064 0.372334 GGCTTAACGGTGCACATACG 59.628 55.000 20.43 15.55 0.00 3.06
4715 5065 0.372334 GCTTAACGGTGCACATACGG 59.628 55.000 20.43 4.42 0.00 4.02
4716 5066 1.717194 CTTAACGGTGCACATACGGT 58.283 50.000 20.43 14.39 35.91 4.83
4732 5082 2.549282 GTGTTGTACACGCCTGCG 59.451 61.111 10.40 10.40 39.53 5.18
4733 5083 1.952133 GTGTTGTACACGCCTGCGA 60.952 57.895 19.52 0.00 39.53 5.10
4734 5084 1.952133 TGTTGTACACGCCTGCGAC 60.952 57.895 19.52 6.72 42.83 5.19
4735 5085 2.731721 TTGTACACGCCTGCGACG 60.732 61.111 19.52 11.01 42.83 5.12
4753 5103 2.436646 CGCCAGCTTGGTGTAGGG 60.437 66.667 7.38 0.00 42.85 3.53
4754 5104 2.751837 GCCAGCTTGGTGTAGGGC 60.752 66.667 4.45 0.00 40.46 5.19
4755 5105 2.044946 CCAGCTTGGTGTAGGGCC 60.045 66.667 0.00 0.00 31.35 5.80
4756 5106 2.044946 CAGCTTGGTGTAGGGCCC 60.045 66.667 16.46 16.46 0.00 5.80
4757 5107 3.717294 AGCTTGGTGTAGGGCCCG 61.717 66.667 18.44 0.00 0.00 6.13
4759 5109 3.717294 CTTGGTGTAGGGCCCGCT 61.717 66.667 18.44 1.33 0.00 5.52
4760 5110 3.976701 CTTGGTGTAGGGCCCGCTG 62.977 68.421 18.44 0.00 0.00 5.18
4762 5112 4.468689 GGTGTAGGGCCCGCTGTC 62.469 72.222 18.44 7.31 0.00 3.51
4763 5113 3.702048 GTGTAGGGCCCGCTGTCA 61.702 66.667 18.44 9.66 0.00 3.58
4764 5114 3.390521 TGTAGGGCCCGCTGTCAG 61.391 66.667 18.44 0.00 0.00 3.51
4765 5115 3.391382 GTAGGGCCCGCTGTCAGT 61.391 66.667 18.44 0.00 0.00 3.41
4766 5116 3.390521 TAGGGCCCGCTGTCAGTG 61.391 66.667 18.44 6.41 0.00 3.66
4767 5117 3.897681 TAGGGCCCGCTGTCAGTGA 62.898 63.158 18.44 0.00 0.00 3.41
4769 5119 4.314440 GGCCCGCTGTCAGTGACA 62.314 66.667 24.09 24.09 40.50 3.58
4777 5127 3.706055 TGTCAGTGACAGAAAGGGC 57.294 52.632 22.06 0.00 37.67 5.19
4778 5128 0.836606 TGTCAGTGACAGAAAGGGCA 59.163 50.000 22.06 0.00 37.67 5.36
4779 5129 1.211703 TGTCAGTGACAGAAAGGGCAA 59.788 47.619 22.06 0.00 37.67 4.52
4780 5130 1.876156 GTCAGTGACAGAAAGGGCAAG 59.124 52.381 18.54 0.00 32.09 4.01
4781 5131 1.202806 TCAGTGACAGAAAGGGCAAGG 60.203 52.381 0.00 0.00 0.00 3.61
4782 5132 0.538287 AGTGACAGAAAGGGCAAGGC 60.538 55.000 0.00 0.00 0.00 4.35
4783 5133 0.823356 GTGACAGAAAGGGCAAGGCA 60.823 55.000 0.00 0.00 0.00 4.75
4784 5134 0.538057 TGACAGAAAGGGCAAGGCAG 60.538 55.000 0.00 0.00 0.00 4.85
4785 5135 1.228675 ACAGAAAGGGCAAGGCAGG 60.229 57.895 0.00 0.00 0.00 4.85
4786 5136 1.980772 CAGAAAGGGCAAGGCAGGG 60.981 63.158 0.00 0.00 0.00 4.45
4787 5137 3.385384 GAAAGGGCAAGGCAGGGC 61.385 66.667 0.00 0.00 0.00 5.19
4803 5153 3.432186 GCGTGTGGCCTGTCTTTT 58.568 55.556 3.32 0.00 34.80 2.27
4804 5154 1.008538 GCGTGTGGCCTGTCTTTTG 60.009 57.895 3.32 0.00 34.80 2.44
4805 5155 1.008538 CGTGTGGCCTGTCTTTTGC 60.009 57.895 3.32 0.00 0.00 3.68
4806 5156 1.008538 GTGTGGCCTGTCTTTTGCG 60.009 57.895 3.32 0.00 0.00 4.85
4807 5157 1.153066 TGTGGCCTGTCTTTTGCGA 60.153 52.632 3.32 0.00 0.00 5.10
4808 5158 0.749818 TGTGGCCTGTCTTTTGCGAA 60.750 50.000 3.32 0.00 0.00 4.70
4809 5159 0.383949 GTGGCCTGTCTTTTGCGAAA 59.616 50.000 3.32 0.00 0.00 3.46
4810 5160 1.107114 TGGCCTGTCTTTTGCGAAAA 58.893 45.000 3.32 0.00 0.00 2.29
4812 5162 1.067060 GGCCTGTCTTTTGCGAAAAGT 59.933 47.619 16.01 0.00 46.18 2.66
4813 5163 2.385315 GCCTGTCTTTTGCGAAAAGTC 58.615 47.619 16.01 12.81 46.18 3.01
4814 5164 2.033424 GCCTGTCTTTTGCGAAAAGTCT 59.967 45.455 16.01 0.00 46.18 3.24
4815 5165 3.850010 GCCTGTCTTTTGCGAAAAGTCTC 60.850 47.826 16.01 10.90 46.18 3.36
4816 5166 3.561725 CCTGTCTTTTGCGAAAAGTCTCT 59.438 43.478 16.01 0.00 46.18 3.10
4817 5167 4.035675 CCTGTCTTTTGCGAAAAGTCTCTT 59.964 41.667 16.01 0.00 46.18 2.85
4818 5168 4.908736 TGTCTTTTGCGAAAAGTCTCTTG 58.091 39.130 16.01 0.00 46.18 3.02
4819 5169 4.634004 TGTCTTTTGCGAAAAGTCTCTTGA 59.366 37.500 16.01 0.65 46.18 3.02
4820 5170 5.296780 TGTCTTTTGCGAAAAGTCTCTTGAT 59.703 36.000 16.01 0.00 46.18 2.57
4821 5171 6.481976 TGTCTTTTGCGAAAAGTCTCTTGATA 59.518 34.615 16.01 0.00 46.18 2.15
4822 5172 7.173218 TGTCTTTTGCGAAAAGTCTCTTGATAT 59.827 33.333 16.01 0.00 46.18 1.63
4823 5173 8.017946 GTCTTTTGCGAAAAGTCTCTTGATATT 58.982 33.333 16.01 0.00 46.18 1.28
4824 5174 8.567948 TCTTTTGCGAAAAGTCTCTTGATATTT 58.432 29.630 16.01 0.00 46.18 1.40
4825 5175 9.185192 CTTTTGCGAAAAGTCTCTTGATATTTT 57.815 29.630 0.00 0.00 42.23 1.82
4826 5176 9.528018 TTTTGCGAAAAGTCTCTTGATATTTTT 57.472 25.926 0.00 0.00 29.85 1.94
4847 5197 4.586306 TTTTCCCTGAAGGATAAGTCCC 57.414 45.455 0.00 0.00 46.94 4.46
4848 5198 3.508952 TTCCCTGAAGGATAAGTCCCT 57.491 47.619 0.00 0.00 46.94 4.20
4849 5199 3.047695 TCCCTGAAGGATAAGTCCCTC 57.952 52.381 0.00 0.00 46.34 4.30
4850 5200 1.689273 CCCTGAAGGATAAGTCCCTCG 59.311 57.143 0.00 0.00 46.34 4.63
4851 5201 2.667470 CCTGAAGGATAAGTCCCTCGA 58.333 52.381 0.00 0.00 46.34 4.04
4852 5202 2.625790 CCTGAAGGATAAGTCCCTCGAG 59.374 54.545 5.13 5.13 46.34 4.04
4853 5203 3.556999 CTGAAGGATAAGTCCCTCGAGA 58.443 50.000 15.71 0.00 46.34 4.04
4854 5204 3.556999 TGAAGGATAAGTCCCTCGAGAG 58.443 50.000 15.71 0.00 46.34 3.20
4855 5205 3.202373 TGAAGGATAAGTCCCTCGAGAGA 59.798 47.826 15.71 2.19 46.34 3.10
4856 5206 3.955524 AGGATAAGTCCCTCGAGAGAA 57.044 47.619 15.71 0.00 46.34 2.87
4857 5207 4.252570 AGGATAAGTCCCTCGAGAGAAA 57.747 45.455 15.71 0.00 46.34 2.52
4858 5208 3.955551 AGGATAAGTCCCTCGAGAGAAAC 59.044 47.826 15.71 6.19 46.34 2.78
4859 5209 3.955551 GGATAAGTCCCTCGAGAGAAACT 59.044 47.826 15.71 8.46 38.69 2.66
4860 5210 4.202070 GGATAAGTCCCTCGAGAGAAACTG 60.202 50.000 15.71 0.00 38.69 3.16
4861 5211 2.296073 AGTCCCTCGAGAGAAACTGT 57.704 50.000 15.71 0.00 41.32 3.55
4862 5212 3.436577 AGTCCCTCGAGAGAAACTGTA 57.563 47.619 15.71 0.00 41.32 2.74
4863 5213 3.970842 AGTCCCTCGAGAGAAACTGTAT 58.029 45.455 15.71 0.00 41.32 2.29
4864 5214 5.113446 AGTCCCTCGAGAGAAACTGTATA 57.887 43.478 15.71 0.00 41.32 1.47
4865 5215 5.507637 AGTCCCTCGAGAGAAACTGTATAA 58.492 41.667 15.71 0.00 41.32 0.98
4866 5216 5.950549 AGTCCCTCGAGAGAAACTGTATAAA 59.049 40.000 15.71 0.00 41.32 1.40
4867 5217 6.436532 AGTCCCTCGAGAGAAACTGTATAAAA 59.563 38.462 15.71 0.00 41.32 1.52
4868 5218 7.039223 AGTCCCTCGAGAGAAACTGTATAAAAA 60.039 37.037 15.71 0.00 41.32 1.94
4890 5240 8.658499 AAAAAGAGAAAAGCTACTCGTTCTAA 57.342 30.769 13.44 0.00 38.08 2.10
4891 5241 7.640616 AAAGAGAAAAGCTACTCGTTCTAAC 57.359 36.000 9.47 0.00 38.08 2.34
4892 5242 6.578163 AGAGAAAAGCTACTCGTTCTAACT 57.422 37.500 8.95 0.00 38.08 2.24
4893 5243 6.614160 AGAGAAAAGCTACTCGTTCTAACTC 58.386 40.000 8.95 0.00 38.08 3.01
4894 5244 5.392286 AGAAAAGCTACTCGTTCTAACTCG 58.608 41.667 0.00 0.00 0.00 4.18
4895 5245 2.828874 AGCTACTCGTTCTAACTCGC 57.171 50.000 0.00 0.00 0.00 5.03
4896 5246 1.062294 AGCTACTCGTTCTAACTCGCG 59.938 52.381 0.00 0.00 0.00 5.87
4897 5247 1.061711 GCTACTCGTTCTAACTCGCGA 59.938 52.381 9.26 9.26 0.00 5.87
4898 5248 2.691836 CTACTCGTTCTAACTCGCGAC 58.308 52.381 3.71 0.00 0.00 5.19
4899 5249 0.167689 ACTCGTTCTAACTCGCGACC 59.832 55.000 3.71 0.00 0.00 4.79
4900 5250 0.447011 CTCGTTCTAACTCGCGACCT 59.553 55.000 3.71 0.00 0.00 3.85
4901 5251 1.662629 CTCGTTCTAACTCGCGACCTA 59.337 52.381 3.71 0.00 0.00 3.08
4902 5252 2.283298 TCGTTCTAACTCGCGACCTAT 58.717 47.619 3.71 0.00 0.00 2.57
4903 5253 3.457234 TCGTTCTAACTCGCGACCTATA 58.543 45.455 3.71 0.00 0.00 1.31
4904 5254 3.492383 TCGTTCTAACTCGCGACCTATAG 59.508 47.826 3.71 5.57 0.00 1.31
4905 5255 3.363772 CGTTCTAACTCGCGACCTATAGG 60.364 52.174 17.73 17.73 42.17 2.57
4918 5268 3.851976 CCTATAGGTAACCTGCGCTAG 57.148 52.381 10.96 4.25 34.61 3.42
4919 5269 3.155501 CCTATAGGTAACCTGCGCTAGT 58.844 50.000 10.96 2.36 34.61 2.57
4920 5270 3.057456 CCTATAGGTAACCTGCGCTAGTG 60.057 52.174 10.96 0.00 34.61 2.74
4921 5271 1.108776 TAGGTAACCTGCGCTAGTGG 58.891 55.000 9.73 8.36 34.61 4.00
4922 5272 0.903454 AGGTAACCTGCGCTAGTGGT 60.903 55.000 9.73 9.05 35.29 4.16
4923 5273 0.739813 GGTAACCTGCGCTAGTGGTG 60.740 60.000 9.73 0.00 33.89 4.17
4924 5274 0.739813 GTAACCTGCGCTAGTGGTGG 60.740 60.000 9.73 1.98 33.89 4.61
4925 5275 2.515996 TAACCTGCGCTAGTGGTGGC 62.516 60.000 9.73 0.00 33.89 5.01
4926 5276 4.087892 CCTGCGCTAGTGGTGGCT 62.088 66.667 9.73 0.00 0.00 4.75
4927 5277 2.721167 CCTGCGCTAGTGGTGGCTA 61.721 63.158 9.73 0.00 0.00 3.93
4928 5278 1.227089 CTGCGCTAGTGGTGGCTAG 60.227 63.158 9.73 0.00 40.91 3.42
4932 5282 3.231298 CTAGTGGTGGCTAGCCCC 58.769 66.667 30.81 28.13 33.04 5.80
4933 5283 2.366435 TAGTGGTGGCTAGCCCCC 60.366 66.667 30.81 28.90 34.56 5.40
4934 5284 3.261315 TAGTGGTGGCTAGCCCCCA 62.261 63.158 31.76 31.76 33.23 4.96
4939 5289 4.992982 TGGCTAGCCCCCACACCA 62.993 66.667 30.81 6.69 34.56 4.17
4940 5290 3.657350 GGCTAGCCCCCACACCAA 61.657 66.667 24.19 0.00 0.00 3.67
4941 5291 2.361230 GCTAGCCCCCACACCAAC 60.361 66.667 2.29 0.00 0.00 3.77
4942 5292 2.907179 GCTAGCCCCCACACCAACT 61.907 63.158 2.29 0.00 0.00 3.16
4943 5293 1.767692 CTAGCCCCCACACCAACTT 59.232 57.895 0.00 0.00 0.00 2.66
4944 5294 0.609131 CTAGCCCCCACACCAACTTG 60.609 60.000 0.00 0.00 0.00 3.16
4945 5295 2.075355 TAGCCCCCACACCAACTTGG 62.075 60.000 6.24 6.24 45.02 3.61
4946 5296 2.931107 CCCCCACACCAACTTGGA 59.069 61.111 15.14 0.00 40.96 3.53
4947 5297 1.464722 CCCCCACACCAACTTGGAT 59.535 57.895 15.14 0.00 40.96 3.41
4948 5298 0.178935 CCCCCACACCAACTTGGATT 60.179 55.000 15.14 0.00 40.96 3.01
4949 5299 1.715785 CCCCACACCAACTTGGATTT 58.284 50.000 15.14 0.00 40.96 2.17
4950 5300 1.344114 CCCCACACCAACTTGGATTTG 59.656 52.381 15.14 5.17 40.96 2.32
4951 5301 2.315176 CCCACACCAACTTGGATTTGA 58.685 47.619 15.14 0.00 40.96 2.69
4952 5302 2.035832 CCCACACCAACTTGGATTTGAC 59.964 50.000 15.14 0.00 40.96 3.18
4953 5303 2.287547 CCACACCAACTTGGATTTGACG 60.288 50.000 15.14 0.71 40.96 4.35
4954 5304 2.357637 CACACCAACTTGGATTTGACGT 59.642 45.455 15.14 0.00 40.96 4.34
4955 5305 2.616842 ACACCAACTTGGATTTGACGTC 59.383 45.455 15.14 9.11 40.96 4.34
4956 5306 2.616376 CACCAACTTGGATTTGACGTCA 59.384 45.455 15.76 15.76 40.96 4.35
4957 5307 2.878406 ACCAACTTGGATTTGACGTCAG 59.122 45.455 19.11 7.75 40.96 3.51
4958 5308 2.878406 CCAACTTGGATTTGACGTCAGT 59.122 45.455 19.11 11.71 40.96 3.41
4959 5309 4.062293 CCAACTTGGATTTGACGTCAGTA 58.938 43.478 19.11 11.44 40.96 2.74
4960 5310 4.695455 CCAACTTGGATTTGACGTCAGTAT 59.305 41.667 19.11 15.71 40.96 2.12
4961 5311 5.872617 CCAACTTGGATTTGACGTCAGTATA 59.127 40.000 19.11 0.11 40.96 1.47
4962 5312 6.370442 CCAACTTGGATTTGACGTCAGTATAA 59.630 38.462 19.11 10.61 40.96 0.98
4963 5313 7.094975 CCAACTTGGATTTGACGTCAGTATAAA 60.095 37.037 19.11 10.21 40.96 1.40
4964 5314 8.450964 CAACTTGGATTTGACGTCAGTATAAAT 58.549 33.333 19.11 14.72 33.05 1.40
4965 5315 9.661563 AACTTGGATTTGACGTCAGTATAAATA 57.338 29.630 19.11 0.00 31.57 1.40
4966 5316 9.095065 ACTTGGATTTGACGTCAGTATAAATAC 57.905 33.333 19.11 15.59 32.67 1.89
4967 5317 9.093970 CTTGGATTTGACGTCAGTATAAATACA 57.906 33.333 19.11 17.92 36.70 2.29
4968 5318 9.607988 TTGGATTTGACGTCAGTATAAATACAT 57.392 29.630 20.20 0.00 37.52 2.29
4972 5322 8.583810 TTTGACGTCAGTATAAATACATAGGC 57.416 34.615 19.11 0.00 35.74 3.93
4973 5323 7.520451 TGACGTCAGTATAAATACATAGGCT 57.480 36.000 15.76 0.00 35.74 4.58
4974 5324 7.948357 TGACGTCAGTATAAATACATAGGCTT 58.052 34.615 15.76 0.00 35.74 4.35
4975 5325 8.418662 TGACGTCAGTATAAATACATAGGCTTT 58.581 33.333 15.76 0.00 35.74 3.51
4976 5326 9.903682 GACGTCAGTATAAATACATAGGCTTTA 57.096 33.333 11.55 0.00 35.74 1.85
4988 5338 9.930158 AATACATAGGCTTTAAATACTTTGGGA 57.070 29.630 0.00 3.73 0.00 4.37
4989 5339 9.930158 ATACATAGGCTTTAAATACTTTGGGAA 57.070 29.630 0.00 2.28 0.00 3.97
4990 5340 8.658840 ACATAGGCTTTAAATACTTTGGGAAA 57.341 30.769 0.00 0.00 0.00 3.13
4991 5341 8.528643 ACATAGGCTTTAAATACTTTGGGAAAC 58.471 33.333 0.00 0.00 0.00 2.78
4992 5342 6.987403 AGGCTTTAAATACTTTGGGAAACA 57.013 33.333 0.00 0.00 0.00 2.83
4993 5343 6.755206 AGGCTTTAAATACTTTGGGAAACAC 58.245 36.000 0.00 0.00 0.00 3.32
4994 5344 5.631929 GGCTTTAAATACTTTGGGAAACACG 59.368 40.000 0.00 0.00 0.00 4.49
4995 5345 6.440436 GCTTTAAATACTTTGGGAAACACGA 58.560 36.000 0.00 0.00 0.00 4.35
4996 5346 6.919115 GCTTTAAATACTTTGGGAAACACGAA 59.081 34.615 0.00 0.00 0.00 3.85
4997 5347 7.435784 GCTTTAAATACTTTGGGAAACACGAAA 59.564 33.333 0.00 0.00 0.00 3.46
4998 5348 9.303537 CTTTAAATACTTTGGGAAACACGAAAA 57.696 29.630 0.00 0.00 0.00 2.29
4999 5349 9.649167 TTTAAATACTTTGGGAAACACGAAAAA 57.351 25.926 0.00 0.00 0.00 1.94
5027 5377 8.918961 ATATTGAAAGTTTGAAACACGTGAAA 57.081 26.923 25.01 9.41 0.00 2.69
5028 5378 7.826260 ATTGAAAGTTTGAAACACGTGAAAT 57.174 28.000 25.01 7.42 0.00 2.17
5029 5379 6.862944 TGAAAGTTTGAAACACGTGAAATC 57.137 33.333 25.01 16.57 0.00 2.17
5030 5380 6.616947 TGAAAGTTTGAAACACGTGAAATCT 58.383 32.000 25.01 11.62 0.00 2.40
5031 5381 7.087639 TGAAAGTTTGAAACACGTGAAATCTT 58.912 30.769 25.01 16.12 0.00 2.40
5032 5382 7.596995 TGAAAGTTTGAAACACGTGAAATCTTT 59.403 29.630 25.01 21.89 0.00 2.52
5033 5383 7.883229 AAGTTTGAAACACGTGAAATCTTTT 57.117 28.000 25.01 11.05 0.00 2.27
5034 5384 7.506296 AGTTTGAAACACGTGAAATCTTTTC 57.494 32.000 25.01 19.43 0.00 2.29
5035 5385 7.087639 AGTTTGAAACACGTGAAATCTTTTCA 58.912 30.769 25.01 21.70 32.54 2.69
5036 5386 7.596995 AGTTTGAAACACGTGAAATCTTTTCAA 59.403 29.630 25.92 25.92 39.79 2.69
5037 5387 7.875316 TTGAAACACGTGAAATCTTTTCAAA 57.125 28.000 26.79 16.77 39.03 2.69
5038 5388 7.875316 TGAAACACGTGAAATCTTTTCAAAA 57.125 28.000 25.01 2.34 31.71 2.44
5039 5389 7.725142 TGAAACACGTGAAATCTTTTCAAAAC 58.275 30.769 25.01 0.00 31.71 2.43
5040 5390 7.382488 TGAAACACGTGAAATCTTTTCAAAACA 59.618 29.630 25.01 2.28 31.71 2.83
5041 5391 7.644986 AACACGTGAAATCTTTTCAAAACAA 57.355 28.000 25.01 0.00 0.00 2.83
5042 5392 7.044589 ACACGTGAAATCTTTTCAAAACAAC 57.955 32.000 25.01 0.00 0.00 3.32
5043 5393 6.090223 ACACGTGAAATCTTTTCAAAACAACC 59.910 34.615 25.01 0.00 0.00 3.77
5044 5394 6.310224 CACGTGAAATCTTTTCAAAACAACCT 59.690 34.615 10.90 0.00 0.00 3.50
5045 5395 6.871492 ACGTGAAATCTTTTCAAAACAACCTT 59.129 30.769 4.37 0.00 0.00 3.50
5046 5396 8.030106 ACGTGAAATCTTTTCAAAACAACCTTA 58.970 29.630 4.37 0.00 0.00 2.69
5047 5397 8.865001 CGTGAAATCTTTTCAAAACAACCTTAA 58.135 29.630 4.37 0.00 0.00 1.85
5197 5547 9.814899 TTTCTTAAAATGCAGTTTTGAAGATCA 57.185 25.926 18.18 8.48 40.17 2.92
5198 5548 9.985730 TTCTTAAAATGCAGTTTTGAAGATCAT 57.014 25.926 18.18 0.00 40.17 2.45
5203 5553 9.768662 AAAATGCAGTTTTGAAGATCATAGTTT 57.231 25.926 6.26 0.00 38.56 2.66
5204 5554 9.768662 AAATGCAGTTTTGAAGATCATAGTTTT 57.231 25.926 0.00 0.00 0.00 2.43
5205 5555 8.976986 ATGCAGTTTTGAAGATCATAGTTTTC 57.023 30.769 0.00 0.00 0.00 2.29
5206 5556 8.169977 TGCAGTTTTGAAGATCATAGTTTTCT 57.830 30.769 0.00 0.00 0.00 2.52
5207 5557 8.632679 TGCAGTTTTGAAGATCATAGTTTTCTT 58.367 29.630 0.00 0.00 32.56 2.52
5208 5558 9.468532 GCAGTTTTGAAGATCATAGTTTTCTTT 57.531 29.630 0.00 0.00 30.11 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.048000 TGCAAACGTTAACCTAGTTTATACG 57.952 36.000 0.00 10.73 36.46 3.06
94 96 4.860352 GTCAAACTTTGCAAACGTTAACCT 59.140 37.500 20.08 8.21 0.00 3.50
101 103 3.029074 CTCGAGTCAAACTTTGCAAACG 58.971 45.455 8.05 7.96 0.00 3.60
181 191 3.949113 GTGGGATAGATATCGAGGACCTC 59.051 52.174 11.87 11.87 33.52 3.85
264 276 8.927411 AGGGGTAATGAAAAGATTGGATTATTG 58.073 33.333 0.00 0.00 0.00 1.90
412 425 1.900337 GCTTGTAGGGGTAGGGTCTGT 60.900 57.143 0.00 0.00 0.00 3.41
428 441 3.822607 AAGCTCTCGTAGGTGCTTG 57.177 52.632 11.65 0.00 43.09 4.01
437 450 3.572255 AGAAGAAGTTCTCAAGCTCTCGT 59.428 43.478 5.70 0.00 38.84 4.18
444 457 3.743396 CGGTGGAAGAAGAAGTTCTCAAG 59.257 47.826 5.70 0.00 42.59 3.02
453 466 0.942410 CGCGTTCGGTGGAAGAAGAA 60.942 55.000 0.00 0.00 31.49 2.52
480 493 5.301835 TCTGGATTCATTTCAGGATCTCC 57.698 43.478 0.00 0.00 0.00 3.71
506 520 7.630082 AGGGTTTTAATTCTAGTGCTCACATA 58.370 34.615 2.63 0.00 0.00 2.29
524 538 7.942894 GTGGTATTCCTAGCATATTAGGGTTTT 59.057 37.037 1.40 0.00 40.56 2.43
624 638 4.603131 ACTACGTACAAGTCTTATGGGGA 58.397 43.478 0.00 0.00 0.00 4.81
672 686 6.270000 CCCTTCCCCCAAAATATAGGATTTTC 59.730 42.308 0.00 0.00 0.00 2.29
1249 1289 2.095847 GTTGCATACGTCCGGCGAA 61.096 57.895 22.10 5.50 44.77 4.70
1261 1301 1.302511 GACACCGGTCCAGTTGCAT 60.303 57.895 2.59 0.00 38.12 3.96
1297 1337 9.990360 TCACTTAGTATTAACTTGACAACATGA 57.010 29.630 0.00 0.00 37.15 3.07
1349 1389 3.353836 GAGGTTGCCAAGCGCGAA 61.354 61.111 12.10 0.00 42.08 4.70
1350 1390 4.314440 AGAGGTTGCCAAGCGCGA 62.314 61.111 12.10 0.00 42.08 5.87
1467 1507 4.351938 TCCCGGTGAGCGTGTTCG 62.352 66.667 2.58 0.00 40.37 3.95
1723 1835 1.069090 TTGCGTCAGCCGAGAAAGT 59.931 52.632 0.00 0.00 44.33 2.66
1741 1853 1.490490 TGGTTTCTGTTGAGGCTGAGT 59.510 47.619 0.00 0.00 0.00 3.41
1754 1866 1.279271 CGATCCCTCCAACTGGTTTCT 59.721 52.381 0.00 0.00 36.34 2.52
1800 1912 5.352284 CGAGATTGAGGTATAACAAGTGCT 58.648 41.667 0.00 0.00 0.00 4.40
1808 1920 2.953648 TGTCGCCGAGATTGAGGTATAA 59.046 45.455 0.00 0.00 0.00 0.98
1876 1988 5.523552 CGACATATCAATGTAGTTCAAGGCA 59.476 40.000 0.00 0.00 46.49 4.75
1959 2071 4.024982 TTGGACCACAACACAAGGGACT 62.025 50.000 0.00 0.00 34.66 3.85
2031 2143 2.100197 TCGTCTGTAGTAGCAGCCATT 58.900 47.619 0.00 0.00 36.49 3.16
2044 2156 0.314302 CGGTGAGGAAGTTCGTCTGT 59.686 55.000 22.37 0.00 32.87 3.41
2048 2160 2.342648 GCCGGTGAGGAAGTTCGT 59.657 61.111 1.90 0.00 45.00 3.85
2155 2267 1.053424 AGAACGGCTCAAGGTTGGTA 58.947 50.000 0.00 0.00 0.00 3.25
2159 2271 1.228657 GCGAAGAACGGCTCAAGGTT 61.229 55.000 0.00 0.00 42.83 3.50
2426 2538 0.106769 TTGTTTGAGAGGTGCAGCCA 60.107 50.000 13.29 0.04 40.61 4.75
2603 2715 0.747283 GACAAGCCAGCTGGGATCTG 60.747 60.000 33.46 17.47 40.01 2.90
2690 2802 1.227674 GCCTAACCATCTCGCCCAG 60.228 63.158 0.00 0.00 0.00 4.45
2794 2978 1.303561 GAGGCCATTGCAGGACACA 60.304 57.895 5.01 0.00 40.05 3.72
3033 3217 0.874607 GACGACGAGCAACACCACTT 60.875 55.000 0.00 0.00 0.00 3.16
3380 3602 4.988598 CACGCGCACCAGGTTCCT 62.989 66.667 5.73 0.00 0.00 3.36
3411 3633 4.760047 CGTGGAAGTCCGGCTGGG 62.760 72.222 12.87 0.00 39.43 4.45
3625 3847 0.249615 CGGCCATCATGTCGTCATCT 60.250 55.000 2.24 0.00 31.15 2.90
3628 3850 2.978000 ACGGCCATCATGTCGTCA 59.022 55.556 2.24 0.00 0.00 4.35
3688 3919 2.308039 GCCTGTGTTGTCGTCGTCC 61.308 63.158 0.00 0.00 0.00 4.79
3715 3946 2.674380 GCAGTGGAGTTGCAGGGG 60.674 66.667 0.00 0.00 41.17 4.79
3793 4044 4.754618 AGAAGAACGTCACATGCATTTACA 59.245 37.500 0.00 0.00 0.00 2.41
3836 4098 1.813178 TGAAACCACGCAACAAGAACA 59.187 42.857 0.00 0.00 0.00 3.18
3868 4138 4.452733 GTCGAAGGGTGGCCTCCG 62.453 72.222 17.51 6.32 0.00 4.63
3913 4183 4.219507 CCGGTGATCATCTCTAGTAGCATT 59.780 45.833 4.09 0.00 0.00 3.56
4006 4282 1.264045 TGATGGCGGTGAGGTCATGA 61.264 55.000 0.00 0.00 31.12 3.07
4071 4347 0.381428 GACGACGTTGTTCGCTTGTG 60.381 55.000 10.42 0.00 43.06 3.33
4091 4367 0.467384 CCAAGGTCCATCAGCTCGAT 59.533 55.000 0.00 0.00 33.27 3.59
4201 4477 1.614385 CGTAGCCACAAGTACGTCAG 58.386 55.000 0.00 0.00 37.77 3.51
4234 4513 9.469097 TGCCACAAGTTTATTATGTAACCTAAT 57.531 29.630 0.00 0.00 0.00 1.73
4235 4514 8.865420 TGCCACAAGTTTATTATGTAACCTAA 57.135 30.769 0.00 0.00 0.00 2.69
4243 4540 5.600696 GGGGAATGCCACAAGTTTATTATG 58.399 41.667 0.00 0.00 37.60 1.90
4262 4559 3.542969 TCTTCATATCTGGATCGGGGA 57.457 47.619 0.00 0.00 0.00 4.81
4268 4565 5.126869 CCTGCGACTATCTTCATATCTGGAT 59.873 44.000 0.00 0.00 0.00 3.41
4269 4566 4.460731 CCTGCGACTATCTTCATATCTGGA 59.539 45.833 0.00 0.00 0.00 3.86
4271 4568 4.219507 ACCCTGCGACTATCTTCATATCTG 59.780 45.833 0.00 0.00 0.00 2.90
4272 4569 4.411927 ACCCTGCGACTATCTTCATATCT 58.588 43.478 0.00 0.00 0.00 1.98
4296 4594 1.595093 GCACCCCCGAGTTTTCCATG 61.595 60.000 0.00 0.00 0.00 3.66
4297 4595 1.304134 GCACCCCCGAGTTTTCCAT 60.304 57.895 0.00 0.00 0.00 3.41
4316 4614 1.623163 TGTACATGTCCTCACGTCCA 58.377 50.000 0.00 0.00 0.00 4.02
4317 4615 2.029290 ACTTGTACATGTCCTCACGTCC 60.029 50.000 0.00 0.00 0.00 4.79
4323 4621 7.116519 GTCTTCTTGTTACTTGTACATGTCCTC 59.883 40.741 16.90 9.79 0.00 3.71
4328 4627 6.593978 GCTGTCTTCTTGTTACTTGTACATG 58.406 40.000 7.18 7.18 0.00 3.21
4333 4632 3.131396 CCGCTGTCTTCTTGTTACTTGT 58.869 45.455 0.00 0.00 0.00 3.16
4348 4647 4.954970 CCTTGCCACACCCGCTGT 62.955 66.667 0.00 0.00 0.00 4.40
4353 4652 1.002502 GTACTCCCTTGCCACACCC 60.003 63.158 0.00 0.00 0.00 4.61
4380 4679 4.563061 ACCATCAACGTACAAGGTAAGTC 58.437 43.478 0.00 0.00 0.00 3.01
4384 4683 6.071221 ACTCAATACCATCAACGTACAAGGTA 60.071 38.462 10.91 10.91 36.20 3.08
4385 4684 5.155278 TCAATACCATCAACGTACAAGGT 57.845 39.130 7.64 7.64 0.00 3.50
4444 4758 2.724273 AATTGCATCAAGCCCCGGC 61.724 57.895 0.00 0.00 44.83 6.13
4498 4846 2.033194 GTTGCAGCACCGTAGACCC 61.033 63.158 0.00 0.00 0.00 4.46
4500 4848 1.344942 CGAGTTGCAGCACCGTAGAC 61.345 60.000 2.55 0.00 0.00 2.59
4518 4866 2.414058 ACTCGATCTGCTGCTTATCG 57.586 50.000 22.48 22.48 42.90 2.92
4534 4882 6.092259 ACAAAATACAAATGCCTCGACTACTC 59.908 38.462 0.00 0.00 0.00 2.59
4535 4883 5.938125 ACAAAATACAAATGCCTCGACTACT 59.062 36.000 0.00 0.00 0.00 2.57
4541 4889 6.806249 ACACAATACAAAATACAAATGCCTCG 59.194 34.615 0.00 0.00 0.00 4.63
4575 4925 8.393366 AGTTAAGGACGAAACTTTTTACACTTC 58.607 33.333 0.00 0.00 32.00 3.01
4576 4926 8.272545 AGTTAAGGACGAAACTTTTTACACTT 57.727 30.769 0.00 0.00 32.00 3.16
4596 4946 4.935205 ACTCTGCATGCGACATAAAGTTAA 59.065 37.500 14.09 0.00 0.00 2.01
4606 4956 2.672874 TGTAATTGACTCTGCATGCGAC 59.327 45.455 14.09 0.00 0.00 5.19
4607 4957 2.672874 GTGTAATTGACTCTGCATGCGA 59.327 45.455 14.09 12.21 0.00 5.10
4608 4958 2.674852 AGTGTAATTGACTCTGCATGCG 59.325 45.455 14.09 8.20 30.63 4.73
4609 4959 4.872691 AGTAGTGTAATTGACTCTGCATGC 59.127 41.667 11.82 11.82 36.91 4.06
4610 4960 7.221645 CACTAGTAGTGTAATTGACTCTGCATG 59.778 40.741 20.29 0.00 41.19 4.06
4611 4961 7.122799 TCACTAGTAGTGTAATTGACTCTGCAT 59.877 37.037 25.83 0.00 46.03 3.96
4612 4962 6.433093 TCACTAGTAGTGTAATTGACTCTGCA 59.567 38.462 25.83 2.83 46.03 4.41
4613 4963 6.853720 TCACTAGTAGTGTAATTGACTCTGC 58.146 40.000 25.83 0.00 46.03 4.26
4623 4973 9.727859 TGCCAAATTTTATCACTAGTAGTGTAA 57.272 29.630 25.83 19.89 46.03 2.41
4624 4974 9.158233 GTGCCAAATTTTATCACTAGTAGTGTA 57.842 33.333 25.83 16.11 46.03 2.90
4625 4975 7.663905 TGTGCCAAATTTTATCACTAGTAGTGT 59.336 33.333 25.83 16.96 46.03 3.55
4627 4977 8.630054 TTGTGCCAAATTTTATCACTAGTAGT 57.370 30.769 0.00 0.00 0.00 2.73
4628 4978 9.906660 TTTTGTGCCAAATTTTATCACTAGTAG 57.093 29.630 0.00 0.00 0.00 2.57
4629 4979 9.906660 CTTTTGTGCCAAATTTTATCACTAGTA 57.093 29.630 0.00 0.00 0.00 1.82
4630 4980 8.421002 ACTTTTGTGCCAAATTTTATCACTAGT 58.579 29.630 12.57 0.00 0.00 2.57
4631 4981 8.816640 ACTTTTGTGCCAAATTTTATCACTAG 57.183 30.769 12.57 0.00 0.00 2.57
4632 4982 9.255304 GAACTTTTGTGCCAAATTTTATCACTA 57.745 29.630 12.57 5.52 0.00 2.74
4633 4983 7.768120 TGAACTTTTGTGCCAAATTTTATCACT 59.232 29.630 12.57 0.00 0.00 3.41
4634 4984 7.850492 GTGAACTTTTGTGCCAAATTTTATCAC 59.150 33.333 1.89 7.08 0.00 3.06
4635 4985 7.768120 AGTGAACTTTTGTGCCAAATTTTATCA 59.232 29.630 1.89 1.80 0.00 2.15
4636 4986 8.141835 AGTGAACTTTTGTGCCAAATTTTATC 57.858 30.769 1.89 0.00 0.00 1.75
4637 4987 8.504812 AAGTGAACTTTTGTGCCAAATTTTAT 57.495 26.923 1.89 0.00 30.82 1.40
4638 4988 7.913674 AAGTGAACTTTTGTGCCAAATTTTA 57.086 28.000 1.89 0.00 30.82 1.52
4639 4989 6.816134 AAGTGAACTTTTGTGCCAAATTTT 57.184 29.167 1.89 0.00 30.82 1.82
4640 4990 6.816134 AAAGTGAACTTTTGTGCCAAATTT 57.184 29.167 2.56 0.00 43.07 1.82
4641 4991 7.913674 TTAAAGTGAACTTTTGTGCCAAATT 57.086 28.000 13.30 0.00 43.07 1.82
4642 4992 7.467131 GCATTAAAGTGAACTTTTGTGCCAAAT 60.467 33.333 22.00 10.69 43.07 2.32
4643 4993 6.183360 GCATTAAAGTGAACTTTTGTGCCAAA 60.183 34.615 22.00 9.35 43.07 3.28
4644 4994 5.293079 GCATTAAAGTGAACTTTTGTGCCAA 59.707 36.000 22.00 9.86 43.07 4.52
4645 4995 4.808364 GCATTAAAGTGAACTTTTGTGCCA 59.192 37.500 22.00 3.14 43.07 4.92
4646 4996 5.049828 AGCATTAAAGTGAACTTTTGTGCC 58.950 37.500 25.41 15.88 45.58 5.01
4647 4997 7.138736 TCTAGCATTAAAGTGAACTTTTGTGC 58.861 34.615 23.57 23.57 43.07 4.57
4648 4998 8.958043 GTTCTAGCATTAAAGTGAACTTTTGTG 58.042 33.333 13.30 12.71 43.07 3.33
4649 4999 8.903820 AGTTCTAGCATTAAAGTGAACTTTTGT 58.096 29.630 13.30 1.19 43.07 2.83
4671 5021 9.569167 GCCAAGTTCTTAAACCATTTATAGTTC 57.431 33.333 0.00 0.00 35.92 3.01
4672 5022 9.309224 AGCCAAGTTCTTAAACCATTTATAGTT 57.691 29.630 0.00 0.00 35.92 2.24
4673 5023 8.879427 AGCCAAGTTCTTAAACCATTTATAGT 57.121 30.769 0.00 0.00 35.92 2.12
4676 5026 9.923143 GTTAAGCCAAGTTCTTAAACCATTTAT 57.077 29.630 0.00 0.00 37.64 1.40
4677 5027 8.077386 CGTTAAGCCAAGTTCTTAAACCATTTA 58.923 33.333 0.00 0.00 37.64 1.40
4678 5028 6.921307 CGTTAAGCCAAGTTCTTAAACCATTT 59.079 34.615 0.00 0.00 37.64 2.32
4679 5029 6.443792 CGTTAAGCCAAGTTCTTAAACCATT 58.556 36.000 0.00 0.00 37.64 3.16
4680 5030 5.048294 CCGTTAAGCCAAGTTCTTAAACCAT 60.048 40.000 0.00 0.00 37.64 3.55
4681 5031 4.276431 CCGTTAAGCCAAGTTCTTAAACCA 59.724 41.667 0.00 0.00 37.64 3.67
4682 5032 4.276678 ACCGTTAAGCCAAGTTCTTAAACC 59.723 41.667 0.00 0.00 37.64 3.27
4683 5033 5.209977 CACCGTTAAGCCAAGTTCTTAAAC 58.790 41.667 0.00 0.00 37.64 2.01
4684 5034 4.261280 GCACCGTTAAGCCAAGTTCTTAAA 60.261 41.667 0.00 0.00 37.64 1.52
4685 5035 3.251487 GCACCGTTAAGCCAAGTTCTTAA 59.749 43.478 0.00 0.00 34.65 1.85
4686 5036 2.809696 GCACCGTTAAGCCAAGTTCTTA 59.190 45.455 0.00 0.00 0.00 2.10
4687 5037 1.607148 GCACCGTTAAGCCAAGTTCTT 59.393 47.619 0.00 0.00 0.00 2.52
4688 5038 1.235724 GCACCGTTAAGCCAAGTTCT 58.764 50.000 0.00 0.00 0.00 3.01
4689 5039 0.948678 TGCACCGTTAAGCCAAGTTC 59.051 50.000 0.00 0.00 0.00 3.01
4690 5040 0.666374 GTGCACCGTTAAGCCAAGTT 59.334 50.000 5.22 0.00 0.00 2.66
4691 5041 0.464735 TGTGCACCGTTAAGCCAAGT 60.465 50.000 15.69 0.00 0.00 3.16
4692 5042 0.881118 ATGTGCACCGTTAAGCCAAG 59.119 50.000 15.69 0.00 0.00 3.61
4693 5043 1.807742 GTATGTGCACCGTTAAGCCAA 59.192 47.619 15.69 0.00 0.00 4.52
4694 5044 1.444836 GTATGTGCACCGTTAAGCCA 58.555 50.000 15.69 0.00 0.00 4.75
4695 5045 0.372334 CGTATGTGCACCGTTAAGCC 59.628 55.000 15.69 0.00 0.00 4.35
4696 5046 0.372334 CCGTATGTGCACCGTTAAGC 59.628 55.000 15.69 0.00 0.00 3.09
4697 5047 1.392168 CACCGTATGTGCACCGTTAAG 59.608 52.381 15.69 6.01 38.34 1.85
4698 5048 1.430479 CACCGTATGTGCACCGTTAA 58.570 50.000 15.69 0.00 38.34 2.01
4699 5049 3.125200 CACCGTATGTGCACCGTTA 57.875 52.632 15.69 0.48 38.34 3.18
4700 5050 3.960237 CACCGTATGTGCACCGTT 58.040 55.556 15.69 1.55 38.34 4.44
4707 5057 1.125384 GCGTGTACAACACCGTATGTG 59.875 52.381 0.00 0.00 45.93 3.21
4708 5058 1.421382 GCGTGTACAACACCGTATGT 58.579 50.000 0.00 0.00 45.93 2.29
4709 5059 0.717224 GGCGTGTACAACACCGTATG 59.283 55.000 0.00 0.00 45.93 2.39
4710 5060 0.604578 AGGCGTGTACAACACCGTAT 59.395 50.000 0.00 0.00 45.93 3.06
4711 5061 0.318869 CAGGCGTGTACAACACCGTA 60.319 55.000 0.00 0.00 45.93 4.02
4712 5062 1.593209 CAGGCGTGTACAACACCGT 60.593 57.895 0.00 0.00 45.93 4.83
4713 5063 2.950172 GCAGGCGTGTACAACACCG 61.950 63.158 8.40 0.00 45.93 4.94
4714 5064 2.943653 GCAGGCGTGTACAACACC 59.056 61.111 8.40 0.00 45.93 4.16
4715 5065 1.952133 TCGCAGGCGTGTACAACAC 60.952 57.895 13.83 0.01 45.26 3.32
4716 5066 1.952133 GTCGCAGGCGTGTACAACA 60.952 57.895 13.83 0.00 40.74 3.33
4717 5067 2.851104 GTCGCAGGCGTGTACAAC 59.149 61.111 13.83 0.00 40.74 3.32
4733 5083 4.308458 TACACCAAGCTGGCGCGT 62.308 61.111 8.43 0.00 42.67 6.01
4734 5084 3.490759 CTACACCAAGCTGGCGCG 61.491 66.667 0.00 0.00 42.67 6.86
4735 5085 3.127533 CCTACACCAAGCTGGCGC 61.128 66.667 0.00 0.00 42.67 6.53
4736 5086 2.436646 CCCTACACCAAGCTGGCG 60.437 66.667 0.00 0.00 42.67 5.69
4737 5087 2.751837 GCCCTACACCAAGCTGGC 60.752 66.667 0.00 0.00 42.67 4.85
4738 5088 2.044946 GGCCCTACACCAAGCTGG 60.045 66.667 0.00 0.00 45.02 4.85
4739 5089 2.044946 GGGCCCTACACCAAGCTG 60.045 66.667 17.04 0.00 0.00 4.24
4740 5090 3.717294 CGGGCCCTACACCAAGCT 61.717 66.667 22.43 0.00 0.00 3.74
4742 5092 3.717294 AGCGGGCCCTACACCAAG 61.717 66.667 22.43 1.78 0.00 3.61
4743 5093 4.028490 CAGCGGGCCCTACACCAA 62.028 66.667 22.43 0.00 0.00 3.67
4745 5095 4.468689 GACAGCGGGCCCTACACC 62.469 72.222 22.43 2.03 0.00 4.16
4746 5096 3.665675 CTGACAGCGGGCCCTACAC 62.666 68.421 22.43 6.53 0.00 2.90
4747 5097 3.390521 CTGACAGCGGGCCCTACA 61.391 66.667 22.43 11.23 0.00 2.74
4748 5098 3.391382 ACTGACAGCGGGCCCTAC 61.391 66.667 22.43 12.39 0.00 3.18
4749 5099 3.390521 CACTGACAGCGGGCCCTA 61.391 66.667 22.43 0.00 0.00 3.53
4752 5102 4.314440 TGTCACTGACAGCGGGCC 62.314 66.667 7.84 0.00 37.67 5.80
4759 5109 0.836606 TGCCCTTTCTGTCACTGACA 59.163 50.000 11.44 11.44 40.50 3.58
4760 5110 1.876156 CTTGCCCTTTCTGTCACTGAC 59.124 52.381 1.86 1.86 0.00 3.51
4761 5111 1.202806 CCTTGCCCTTTCTGTCACTGA 60.203 52.381 0.00 0.00 0.00 3.41
4762 5112 1.242076 CCTTGCCCTTTCTGTCACTG 58.758 55.000 0.00 0.00 0.00 3.66
4763 5113 0.538287 GCCTTGCCCTTTCTGTCACT 60.538 55.000 0.00 0.00 0.00 3.41
4764 5114 0.823356 TGCCTTGCCCTTTCTGTCAC 60.823 55.000 0.00 0.00 0.00 3.67
4765 5115 0.538057 CTGCCTTGCCCTTTCTGTCA 60.538 55.000 0.00 0.00 0.00 3.58
4766 5116 1.246737 CCTGCCTTGCCCTTTCTGTC 61.247 60.000 0.00 0.00 0.00 3.51
4767 5117 1.228675 CCTGCCTTGCCCTTTCTGT 60.229 57.895 0.00 0.00 0.00 3.41
4768 5118 1.980772 CCCTGCCTTGCCCTTTCTG 60.981 63.158 0.00 0.00 0.00 3.02
4769 5119 2.442413 CCCTGCCTTGCCCTTTCT 59.558 61.111 0.00 0.00 0.00 2.52
4770 5120 3.385384 GCCCTGCCTTGCCCTTTC 61.385 66.667 0.00 0.00 0.00 2.62
4786 5136 1.008538 CAAAAGACAGGCCACACGC 60.009 57.895 5.01 0.00 0.00 5.34
4787 5137 1.008538 GCAAAAGACAGGCCACACG 60.009 57.895 5.01 0.00 0.00 4.49
4788 5138 1.008538 CGCAAAAGACAGGCCACAC 60.009 57.895 5.01 0.00 0.00 3.82
4789 5139 0.749818 TTCGCAAAAGACAGGCCACA 60.750 50.000 5.01 0.00 0.00 4.17
4790 5140 0.383949 TTTCGCAAAAGACAGGCCAC 59.616 50.000 5.01 0.00 0.00 5.01
4791 5141 1.107114 TTTTCGCAAAAGACAGGCCA 58.893 45.000 5.01 0.00 0.00 5.36
4792 5142 3.957383 TTTTCGCAAAAGACAGGCC 57.043 47.368 0.00 0.00 0.00 5.19
4800 5150 9.528018 AAAAATATCAAGAGACTTTTCGCAAAA 57.472 25.926 0.00 0.00 0.00 2.44
4825 5175 4.606255 AGGGACTTATCCTTCAGGGAAAAA 59.394 41.667 0.00 0.00 42.47 1.94
4826 5176 4.183916 AGGGACTTATCCTTCAGGGAAAA 58.816 43.478 0.00 0.00 42.47 2.29
4827 5177 3.815507 AGGGACTTATCCTTCAGGGAAA 58.184 45.455 0.00 0.00 42.47 3.13
4828 5178 3.508952 AGGGACTTATCCTTCAGGGAA 57.491 47.619 0.00 0.00 42.47 3.97
4834 5184 3.822940 TCTCTCGAGGGACTTATCCTTC 58.177 50.000 12.03 0.00 45.65 3.46
4835 5185 3.955524 TCTCTCGAGGGACTTATCCTT 57.044 47.619 12.03 0.00 45.46 3.36
4836 5186 3.955524 TTCTCTCGAGGGACTTATCCT 57.044 47.619 16.38 0.00 45.46 3.24
4837 5187 3.955551 AGTTTCTCTCGAGGGACTTATCC 59.044 47.826 16.38 0.00 41.55 2.59
4838 5188 4.399934 ACAGTTTCTCTCGAGGGACTTATC 59.600 45.833 16.38 0.00 41.55 1.75
4839 5189 4.345854 ACAGTTTCTCTCGAGGGACTTAT 58.654 43.478 16.38 0.00 41.55 1.73
4840 5190 3.764218 ACAGTTTCTCTCGAGGGACTTA 58.236 45.455 16.38 0.00 41.55 2.24
4841 5191 2.599677 ACAGTTTCTCTCGAGGGACTT 58.400 47.619 16.38 0.00 41.55 3.01
4843 5193 5.831702 TTATACAGTTTCTCTCGAGGGAC 57.168 43.478 16.38 5.09 0.00 4.46
4844 5194 6.845758 TTTTATACAGTTTCTCTCGAGGGA 57.154 37.500 12.03 12.03 0.00 4.20
4865 5215 8.549548 GTTAGAACGAGTAGCTTTTCTCTTTTT 58.450 33.333 0.00 0.00 30.89 1.94
4866 5216 7.927092 AGTTAGAACGAGTAGCTTTTCTCTTTT 59.073 33.333 0.00 0.00 30.89 2.27
4867 5217 7.435305 AGTTAGAACGAGTAGCTTTTCTCTTT 58.565 34.615 0.00 0.00 30.89 2.52
4868 5218 6.983984 AGTTAGAACGAGTAGCTTTTCTCTT 58.016 36.000 0.00 0.00 30.89 2.85
4869 5219 6.578163 AGTTAGAACGAGTAGCTTTTCTCT 57.422 37.500 0.00 0.00 30.89 3.10
4870 5220 5.508922 CGAGTTAGAACGAGTAGCTTTTCTC 59.491 44.000 0.00 0.00 30.89 2.87
4871 5221 5.392286 CGAGTTAGAACGAGTAGCTTTTCT 58.608 41.667 0.00 0.00 32.99 2.52
4872 5222 4.030418 GCGAGTTAGAACGAGTAGCTTTTC 59.970 45.833 0.00 0.00 0.00 2.29
4873 5223 3.919197 GCGAGTTAGAACGAGTAGCTTTT 59.081 43.478 0.00 0.00 0.00 2.27
4874 5224 3.500014 GCGAGTTAGAACGAGTAGCTTT 58.500 45.455 0.00 0.00 0.00 3.51
4875 5225 2.475852 CGCGAGTTAGAACGAGTAGCTT 60.476 50.000 0.00 0.00 0.00 3.74
4876 5226 1.062294 CGCGAGTTAGAACGAGTAGCT 59.938 52.381 0.00 0.00 0.00 3.32
4877 5227 1.061711 TCGCGAGTTAGAACGAGTAGC 59.938 52.381 3.71 0.00 0.00 3.58
4878 5228 2.536529 GGTCGCGAGTTAGAACGAGTAG 60.537 54.545 10.24 0.00 34.83 2.57
4879 5229 1.394917 GGTCGCGAGTTAGAACGAGTA 59.605 52.381 10.24 0.00 34.83 2.59
4880 5230 0.167689 GGTCGCGAGTTAGAACGAGT 59.832 55.000 10.24 0.00 34.83 4.18
4881 5231 0.447011 AGGTCGCGAGTTAGAACGAG 59.553 55.000 10.24 0.00 34.83 4.18
4882 5232 1.725641 TAGGTCGCGAGTTAGAACGA 58.274 50.000 10.24 0.00 0.00 3.85
4883 5233 2.752144 ATAGGTCGCGAGTTAGAACG 57.248 50.000 10.24 0.00 0.00 3.95
4884 5234 4.144534 CCTATAGGTCGCGAGTTAGAAC 57.855 50.000 10.24 0.00 0.00 3.01
4895 5245 4.362407 TAGCGCAGGTTACCTATAGGTCG 61.362 52.174 27.89 22.71 43.92 4.79
4896 5246 3.152341 TAGCGCAGGTTACCTATAGGTC 58.848 50.000 27.89 14.43 43.92 3.85
4897 5247 3.155501 CTAGCGCAGGTTACCTATAGGT 58.844 50.000 27.24 27.24 45.91 3.08
4898 5248 3.057456 CACTAGCGCAGGTTACCTATAGG 60.057 52.174 17.73 17.73 40.68 2.57
4899 5249 3.057456 CCACTAGCGCAGGTTACCTATAG 60.057 52.174 11.47 7.04 40.68 1.31
4900 5250 2.889045 CCACTAGCGCAGGTTACCTATA 59.111 50.000 11.47 0.00 40.68 1.31
4901 5251 1.687123 CCACTAGCGCAGGTTACCTAT 59.313 52.381 11.47 0.00 40.68 2.57
4902 5252 1.108776 CCACTAGCGCAGGTTACCTA 58.891 55.000 11.47 0.00 40.68 3.08
4903 5253 0.903454 ACCACTAGCGCAGGTTACCT 60.903 55.000 11.47 0.00 40.68 3.08
4904 5254 0.739813 CACCACTAGCGCAGGTTACC 60.740 60.000 11.47 0.00 40.68 2.85
4905 5255 0.739813 CCACCACTAGCGCAGGTTAC 60.740 60.000 11.47 0.00 40.68 2.50
4906 5256 1.594833 CCACCACTAGCGCAGGTTA 59.405 57.895 11.47 0.00 40.68 2.85
4907 5257 2.347490 CCACCACTAGCGCAGGTT 59.653 61.111 11.47 0.00 40.68 3.50
4908 5258 4.394712 GCCACCACTAGCGCAGGT 62.395 66.667 11.47 9.27 44.89 4.00
4909 5259 2.635229 CTAGCCACCACTAGCGCAGG 62.635 65.000 11.47 8.53 33.69 4.85
4910 5260 1.227089 CTAGCCACCACTAGCGCAG 60.227 63.158 11.47 7.81 33.69 5.18
4911 5261 2.892640 CTAGCCACCACTAGCGCA 59.107 61.111 11.47 0.00 33.69 6.09
4915 5265 3.231298 GGGGCTAGCCACCACTAG 58.769 66.667 34.09 0.00 42.20 2.57
4921 5271 4.426313 GGTGTGGGGGCTAGCCAC 62.426 72.222 34.09 31.73 39.22 5.01
4922 5272 4.992982 TGGTGTGGGGGCTAGCCA 62.993 66.667 34.09 12.46 37.98 4.75
4923 5273 3.657350 TTGGTGTGGGGGCTAGCC 61.657 66.667 26.55 26.55 0.00 3.93
4924 5274 2.361230 GTTGGTGTGGGGGCTAGC 60.361 66.667 6.04 6.04 0.00 3.42
4925 5275 0.609131 CAAGTTGGTGTGGGGGCTAG 60.609 60.000 0.00 0.00 0.00 3.42
4926 5276 1.458486 CAAGTTGGTGTGGGGGCTA 59.542 57.895 0.00 0.00 0.00 3.93
4927 5277 2.198426 CAAGTTGGTGTGGGGGCT 59.802 61.111 0.00 0.00 0.00 5.19
4928 5278 2.730129 ATCCAAGTTGGTGTGGGGGC 62.730 60.000 21.35 0.00 39.03 5.80
4929 5279 0.178935 AATCCAAGTTGGTGTGGGGG 60.179 55.000 21.35 0.00 39.03 5.40
4930 5280 1.344114 CAAATCCAAGTTGGTGTGGGG 59.656 52.381 21.35 4.51 39.03 4.96
4931 5281 2.035832 GTCAAATCCAAGTTGGTGTGGG 59.964 50.000 21.35 8.98 39.03 4.61
4932 5282 2.287547 CGTCAAATCCAAGTTGGTGTGG 60.288 50.000 21.35 8.49 39.03 4.17
4933 5283 2.357637 ACGTCAAATCCAAGTTGGTGTG 59.642 45.455 21.35 16.45 39.03 3.82
4934 5284 2.616842 GACGTCAAATCCAAGTTGGTGT 59.383 45.455 21.35 9.07 39.03 4.16
4935 5285 2.616376 TGACGTCAAATCCAAGTTGGTG 59.384 45.455 21.35 12.68 39.03 4.17
4936 5286 2.878406 CTGACGTCAAATCCAAGTTGGT 59.122 45.455 20.49 6.49 39.03 3.67
4937 5287 2.878406 ACTGACGTCAAATCCAAGTTGG 59.122 45.455 20.49 16.36 39.43 3.77
4938 5288 5.862924 ATACTGACGTCAAATCCAAGTTG 57.137 39.130 20.49 6.15 0.00 3.16
4939 5289 7.972832 TTTATACTGACGTCAAATCCAAGTT 57.027 32.000 20.49 5.91 0.00 2.66
4940 5290 9.095065 GTATTTATACTGACGTCAAATCCAAGT 57.905 33.333 20.49 13.98 0.00 3.16
4941 5291 9.093970 TGTATTTATACTGACGTCAAATCCAAG 57.906 33.333 20.49 8.42 34.41 3.61
4942 5292 9.607988 ATGTATTTATACTGACGTCAAATCCAA 57.392 29.630 20.49 10.27 34.41 3.53
4946 5296 9.204570 GCCTATGTATTTATACTGACGTCAAAT 57.795 33.333 20.49 17.16 34.41 2.32
4947 5297 8.418662 AGCCTATGTATTTATACTGACGTCAAA 58.581 33.333 20.49 10.88 34.41 2.69
4948 5298 7.948357 AGCCTATGTATTTATACTGACGTCAA 58.052 34.615 20.49 5.99 34.41 3.18
4949 5299 7.520451 AGCCTATGTATTTATACTGACGTCA 57.480 36.000 18.88 18.88 34.41 4.35
4950 5300 8.813643 AAAGCCTATGTATTTATACTGACGTC 57.186 34.615 9.11 9.11 34.41 4.34
4962 5312 9.930158 TCCCAAAGTATTTAAAGCCTATGTATT 57.070 29.630 0.00 0.00 35.03 1.89
4963 5313 9.930158 TTCCCAAAGTATTTAAAGCCTATGTAT 57.070 29.630 0.00 0.00 35.03 2.29
4964 5314 9.756571 TTTCCCAAAGTATTTAAAGCCTATGTA 57.243 29.630 0.00 0.00 35.03 2.29
4965 5315 8.528643 GTTTCCCAAAGTATTTAAAGCCTATGT 58.471 33.333 0.00 0.00 35.03 2.29
4966 5316 8.527810 TGTTTCCCAAAGTATTTAAAGCCTATG 58.472 33.333 0.00 0.00 35.03 2.23
4967 5317 8.528643 GTGTTTCCCAAAGTATTTAAAGCCTAT 58.471 33.333 0.00 0.00 35.03 2.57
4968 5318 7.308710 CGTGTTTCCCAAAGTATTTAAAGCCTA 60.309 37.037 0.00 0.00 35.03 3.93
4969 5319 6.516028 CGTGTTTCCCAAAGTATTTAAAGCCT 60.516 38.462 0.00 0.00 35.03 4.58
4970 5320 5.631929 CGTGTTTCCCAAAGTATTTAAAGCC 59.368 40.000 0.00 0.00 35.03 4.35
4971 5321 6.440436 TCGTGTTTCCCAAAGTATTTAAAGC 58.560 36.000 0.00 0.00 35.03 3.51
4972 5322 8.859517 TTTCGTGTTTCCCAAAGTATTTAAAG 57.140 30.769 0.00 0.00 35.03 1.85
4973 5323 9.649167 TTTTTCGTGTTTCCCAAAGTATTTAAA 57.351 25.926 0.00 0.00 35.03 1.52
5002 5352 8.918961 TTTCACGTGTTTCAAACTTTCAATAT 57.081 26.923 16.51 0.00 0.00 1.28
5003 5353 8.918961 ATTTCACGTGTTTCAAACTTTCAATA 57.081 26.923 16.51 0.00 0.00 1.90
5004 5354 7.759433 AGATTTCACGTGTTTCAAACTTTCAAT 59.241 29.630 16.51 0.00 0.00 2.57
5005 5355 7.087639 AGATTTCACGTGTTTCAAACTTTCAA 58.912 30.769 16.51 0.00 0.00 2.69
5006 5356 6.616947 AGATTTCACGTGTTTCAAACTTTCA 58.383 32.000 16.51 0.00 0.00 2.69
5007 5357 7.506296 AAGATTTCACGTGTTTCAAACTTTC 57.494 32.000 16.51 3.79 0.00 2.62
5008 5358 7.883229 AAAGATTTCACGTGTTTCAAACTTT 57.117 28.000 16.51 15.60 0.00 2.66
5009 5359 7.596995 TGAAAAGATTTCACGTGTTTCAAACTT 59.403 29.630 20.76 14.21 33.37 2.66
5010 5360 7.087639 TGAAAAGATTTCACGTGTTTCAAACT 58.912 30.769 20.76 10.29 33.37 2.66
5011 5361 7.271936 TGAAAAGATTTCACGTGTTTCAAAC 57.728 32.000 20.76 8.64 33.37 2.93
5012 5362 7.875316 TTGAAAAGATTTCACGTGTTTCAAA 57.125 28.000 26.79 17.22 40.25 2.69
5013 5363 7.875316 TTTGAAAAGATTTCACGTGTTTCAA 57.125 28.000 25.92 25.92 41.00 2.69
5014 5364 7.382488 TGTTTTGAAAAGATTTCACGTGTTTCA 59.618 29.630 19.73 19.73 34.20 2.69
5015 5365 7.725142 TGTTTTGAAAAGATTTCACGTGTTTC 58.275 30.769 16.51 16.23 0.00 2.78
5016 5366 7.644986 TGTTTTGAAAAGATTTCACGTGTTT 57.355 28.000 16.51 7.37 0.00 2.83
5017 5367 7.359681 GGTTGTTTTGAAAAGATTTCACGTGTT 60.360 33.333 16.51 0.00 0.00 3.32
5018 5368 6.090223 GGTTGTTTTGAAAAGATTTCACGTGT 59.910 34.615 16.51 0.00 0.00 4.49
5019 5369 6.310224 AGGTTGTTTTGAAAAGATTTCACGTG 59.690 34.615 9.94 9.94 0.00 4.49
5020 5370 6.394809 AGGTTGTTTTGAAAAGATTTCACGT 58.605 32.000 5.09 0.00 0.00 4.49
5021 5371 6.885735 AGGTTGTTTTGAAAAGATTTCACG 57.114 33.333 5.09 0.00 0.00 4.35
5171 5521 9.814899 TGATCTTCAAAACTGCATTTTAAGAAA 57.185 25.926 14.87 7.36 38.50 2.52
5172 5522 9.985730 ATGATCTTCAAAACTGCATTTTAAGAA 57.014 25.926 14.87 13.98 38.50 2.52
5177 5527 9.768662 AAACTATGATCTTCAAAACTGCATTTT 57.231 25.926 0.00 0.00 41.38 1.82
5178 5528 9.768662 AAAACTATGATCTTCAAAACTGCATTT 57.231 25.926 0.00 0.00 0.00 2.32
5179 5529 9.415544 GAAAACTATGATCTTCAAAACTGCATT 57.584 29.630 0.00 0.00 0.00 3.56
5180 5530 8.800332 AGAAAACTATGATCTTCAAAACTGCAT 58.200 29.630 0.00 0.00 0.00 3.96
5181 5531 8.169977 AGAAAACTATGATCTTCAAAACTGCA 57.830 30.769 0.00 0.00 0.00 4.41
5182 5532 9.468532 AAAGAAAACTATGATCTTCAAAACTGC 57.531 29.630 0.00 0.00 32.45 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.