Multiple sequence alignment - TraesCS7D01G014900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G014900 chr7D 100.000 6144 0 0 1 6144 6477624 6483767 0.000000e+00 11346
1 TraesCS7D01G014900 chr7D 81.833 600 66 24 1361 1954 561800905 561800343 1.210000e-126 464
2 TraesCS7D01G014900 chr4A 89.187 2053 148 39 3047 5080 733698037 733696040 0.000000e+00 2494
3 TraesCS7D01G014900 chr4A 85.275 2309 219 74 785 3068 733700276 733698064 0.000000e+00 2268
4 TraesCS7D01G014900 chr4A 83.051 1121 86 47 5058 6123 733696034 733694963 0.000000e+00 922
5 TraesCS7D01G014900 chr4A 87.288 472 56 3 1563 2032 662781395 662781864 2.520000e-148 536
6 TraesCS7D01G014900 chr4A 81.400 457 52 20 1045 1477 662780925 662781372 5.900000e-90 342
7 TraesCS7D01G014900 chr4A 84.036 332 31 10 3 333 733705940 733705630 3.600000e-77 300
8 TraesCS7D01G014900 chr7A 92.609 1380 84 9 3047 4415 7595529 7596901 0.000000e+00 1967
9 TraesCS7D01G014900 chr7A 94.560 1011 53 2 2062 3071 7594496 7595505 0.000000e+00 1561
10 TraesCS7D01G014900 chr7A 81.886 1866 161 87 2 1771 7592324 7594108 0.000000e+00 1410
11 TraesCS7D01G014900 chr7A 87.633 938 77 17 4413 5323 7596982 7597907 0.000000e+00 1053
12 TraesCS7D01G014900 chr7A 80.634 852 87 43 5312 6144 7597928 7598720 6.860000e-164 588
13 TraesCS7D01G014900 chr7A 87.747 253 25 2 1827 2073 7594227 7594479 2.170000e-74 291
14 TraesCS7D01G014900 chr4B 88.136 472 52 4 1563 2032 44631308 44631777 5.380000e-155 558
15 TraesCS7D01G014900 chr4B 85.020 494 42 19 1004 1477 44859266 44859747 2.000000e-129 473
16 TraesCS7D01G014900 chr4B 83.766 462 47 17 1037 1477 44630831 44631285 4.430000e-111 412
17 TraesCS7D01G014900 chr4B 79.487 390 42 16 1843 2230 439419288 439419641 6.150000e-60 243
18 TraesCS7D01G014900 chr6D 79.692 389 38 22 1843 2226 447162171 447162523 6.150000e-60 243
19 TraesCS7D01G014900 chr6D 78.780 377 41 17 1843 2217 179684592 179684931 3.730000e-52 217
20 TraesCS7D01G014900 chr7B 79.420 379 39 19 1851 2226 301268392 301268050 1.330000e-56 231
21 TraesCS7D01G014900 chr7B 77.892 389 42 25 1843 2226 396240339 396240688 1.040000e-47 202
22 TraesCS7D01G014900 chrUn 79.045 377 42 15 1843 2217 22982589 22982930 2.230000e-54 224
23 TraesCS7D01G014900 chr4D 79.003 381 39 20 1851 2226 503886431 503886775 8.020000e-54 222
24 TraesCS7D01G014900 chr4D 78.740 381 40 20 1851 2226 42557777 42557433 3.730000e-52 217
25 TraesCS7D01G014900 chr1D 79.003 381 39 20 1851 2226 26717520 26717176 8.020000e-54 222
26 TraesCS7D01G014900 chr3B 89.147 129 14 0 1845 1973 599710127 599710255 1.770000e-35 161
27 TraesCS7D01G014900 chr3B 77.130 223 35 14 4320 4534 433935647 433935433 1.400000e-21 115
28 TraesCS7D01G014900 chr5D 81.481 216 20 9 2013 2226 433906012 433906209 6.370000e-35 159
29 TraesCS7D01G014900 chr5B 77.523 218 35 12 4324 4534 651939999 651939789 1.080000e-22 119
30 TraesCS7D01G014900 chr5B 77.064 218 36 11 4324 4534 81631371 81631161 5.030000e-21 113
31 TraesCS7D01G014900 chr5B 77.512 209 34 11 4324 4526 652145232 652145031 5.030000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G014900 chr7D 6477624 6483767 6143 False 11346.000000 11346 100.000000 1 6144 1 chr7D.!!$F1 6143
1 TraesCS7D01G014900 chr7D 561800343 561800905 562 True 464.000000 464 81.833000 1361 1954 1 chr7D.!!$R1 593
2 TraesCS7D01G014900 chr4A 733694963 733700276 5313 True 1894.666667 2494 85.837667 785 6123 3 chr4A.!!$R2 5338
3 TraesCS7D01G014900 chr4A 662780925 662781864 939 False 439.000000 536 84.344000 1045 2032 2 chr4A.!!$F1 987
4 TraesCS7D01G014900 chr7A 7592324 7598720 6396 False 1145.000000 1967 87.511500 2 6144 6 chr7A.!!$F1 6142
5 TraesCS7D01G014900 chr4B 44630831 44631777 946 False 485.000000 558 85.951000 1037 2032 2 chr4B.!!$F3 995

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.036010 AGGGTTCATGTCGCAGGAAG 60.036 55.000 7.08 0.00 34.86 3.46 F
66 67 0.036388 GGGTTCATGTCGCAGGAAGA 60.036 55.000 7.08 0.00 34.86 2.87 F
1525 1656 0.033920 ATGCTATGCTCGATGCGGAA 59.966 50.000 0.00 0.00 46.63 4.30 F
2050 2290 0.605319 TGCCTAGTCGTTTGGCTTGG 60.605 55.000 13.66 0.00 46.37 3.61 F
2988 3264 0.958091 TATGGTGGCAACTGTTGTGC 59.042 50.000 20.57 9.02 37.61 4.57 F
3088 3418 1.824230 TGCCTGGTATGTGCAAATTCC 59.176 47.619 5.58 5.58 30.85 3.01 F
4719 5148 0.614697 TCTTCCTGAGCACGGATCCA 60.615 55.000 13.41 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1486 0.251209 AGTCGTCCAGTACAGCCTGA 60.251 55.0 0.00 0.00 34.23 3.86 R
1779 2004 0.741221 GAAGCAGACGGCCTAAGGTG 60.741 60.0 0.00 0.00 46.50 4.00 R
2509 2781 0.745845 GCACATCCTTGCTCCACGAT 60.746 55.0 0.00 0.00 39.59 3.73 R
3629 3961 0.323999 TGGCCTTCATGCTTGCAGAT 60.324 50.0 3.32 0.00 0.00 2.90 R
4637 5064 0.032813 AGACCCCGGATTTCCTACGA 60.033 55.0 0.73 0.00 0.00 3.43 R
4725 5154 0.248621 AGCGAAATTAGCAATGCCGC 60.249 50.0 14.52 14.52 40.48 6.53 R
5524 6082 0.321653 CAAGGTTTCCGGTGGAGAGG 60.322 60.0 0.00 0.00 31.21 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.941812 GGGCACAGACAGACAAACG 59.058 57.895 0.00 0.00 0.00 3.60
19 20 0.814010 GGGCACAGACAGACAAACGT 60.814 55.000 0.00 0.00 0.00 3.99
24 25 2.080693 ACAGACAGACAAACGTGCAAA 58.919 42.857 0.00 0.00 0.00 3.68
25 26 2.682856 ACAGACAGACAAACGTGCAAAT 59.317 40.909 0.00 0.00 0.00 2.32
26 27 3.242739 ACAGACAGACAAACGTGCAAATC 60.243 43.478 0.00 0.00 0.00 2.17
47 48 2.364243 CGCAGCGAATCAGATGAAAG 57.636 50.000 9.98 0.00 0.00 2.62
49 50 1.332997 GCAGCGAATCAGATGAAAGGG 59.667 52.381 0.00 0.00 0.00 3.95
51 52 3.012518 CAGCGAATCAGATGAAAGGGTT 58.987 45.455 0.00 0.00 0.00 4.11
52 53 3.064545 CAGCGAATCAGATGAAAGGGTTC 59.935 47.826 0.00 0.00 0.00 3.62
60 61 3.715871 TGAAAGGGTTCATGTCGCA 57.284 47.368 0.00 0.00 38.88 5.10
61 62 1.522668 TGAAAGGGTTCATGTCGCAG 58.477 50.000 0.00 0.00 38.88 5.18
62 63 0.804989 GAAAGGGTTCATGTCGCAGG 59.195 55.000 0.00 0.00 33.61 4.85
63 64 0.400213 AAAGGGTTCATGTCGCAGGA 59.600 50.000 0.00 0.00 0.00 3.86
64 65 0.400213 AAGGGTTCATGTCGCAGGAA 59.600 50.000 3.44 3.44 31.68 3.36
65 66 0.036010 AGGGTTCATGTCGCAGGAAG 60.036 55.000 7.08 0.00 34.86 3.46
66 67 0.036388 GGGTTCATGTCGCAGGAAGA 60.036 55.000 7.08 0.00 34.86 2.87
67 68 1.079503 GGTTCATGTCGCAGGAAGAC 58.920 55.000 7.08 1.76 34.86 3.01
68 69 1.079503 GTTCATGTCGCAGGAAGACC 58.920 55.000 7.08 0.00 34.86 3.85
69 70 0.389817 TTCATGTCGCAGGAAGACCG 60.390 55.000 3.44 0.00 41.83 4.79
77 78 1.972198 CAGGAAGACCGGCACACTA 59.028 57.895 0.00 0.00 41.83 2.74
91 92 1.797046 CACACTAGCAGCAACAGACAG 59.203 52.381 0.00 0.00 0.00 3.51
112 113 1.964448 CAGGGCACACTGACGAGTA 59.036 57.895 0.00 0.00 40.97 2.59
113 114 0.388649 CAGGGCACACTGACGAGTAC 60.389 60.000 0.00 0.00 40.97 2.73
115 116 1.171308 GGGCACACTGACGAGTACTA 58.829 55.000 0.00 0.00 0.00 1.82
173 176 1.160137 CAACAGCAACACCTCTAGGC 58.840 55.000 0.00 0.00 39.32 3.93
209 212 1.451067 AAATCTCTGTCAGCAGCAGC 58.549 50.000 0.00 0.00 42.29 5.25
278 287 3.612681 GCGGCCGCCATCCTAGTA 61.613 66.667 39.89 0.00 34.56 1.82
279 288 2.651361 CGGCCGCCATCCTAGTAG 59.349 66.667 14.67 0.00 0.00 2.57
286 295 1.267261 CGCCATCCTAGTAGGTCGAAG 59.733 57.143 16.02 3.17 36.53 3.79
307 316 2.548920 GGAAATCTAGCTCATCCCACGG 60.549 54.545 0.00 0.00 0.00 4.94
327 336 4.084888 CGCGCCGAAACCCAACTC 62.085 66.667 0.00 0.00 0.00 3.01
330 339 2.434774 GCCGAAACCCAACTCCCT 59.565 61.111 0.00 0.00 0.00 4.20
332 341 1.002502 CCGAAACCCAACTCCCTCC 60.003 63.158 0.00 0.00 0.00 4.30
333 342 1.375523 CGAAACCCAACTCCCTCCG 60.376 63.158 0.00 0.00 0.00 4.63
334 343 1.002502 GAAACCCAACTCCCTCCGG 60.003 63.158 0.00 0.00 0.00 5.14
420 431 3.790437 CCCGCATCAGGGCAGAGT 61.790 66.667 0.00 0.00 45.72 3.24
421 432 2.270205 CCGCATCAGGGCAGAGTT 59.730 61.111 0.00 0.00 0.00 3.01
422 433 1.522092 CCGCATCAGGGCAGAGTTA 59.478 57.895 0.00 0.00 0.00 2.24
423 434 0.531532 CCGCATCAGGGCAGAGTTAG 60.532 60.000 0.00 0.00 0.00 2.34
424 435 0.461548 CGCATCAGGGCAGAGTTAGA 59.538 55.000 0.00 0.00 0.00 2.10
425 436 1.804372 CGCATCAGGGCAGAGTTAGAC 60.804 57.143 0.00 0.00 0.00 2.59
430 450 2.732619 GGGCAGAGTTAGACGGGGG 61.733 68.421 0.00 0.00 0.00 5.40
436 456 1.274447 AGAGTTAGACGGGGGAAAACG 59.726 52.381 0.00 0.00 0.00 3.60
441 461 1.300853 GACGGGGGAAAACGAACGA 60.301 57.895 0.14 0.00 0.00 3.85
450 470 1.824272 AAAACGAACGAGGAACCGCG 61.824 55.000 14.63 14.63 44.41 6.46
451 471 4.712425 ACGAACGAGGAACCGCGG 62.712 66.667 26.86 26.86 43.22 6.46
628 650 4.862823 GTCGGGAGAGGGGGAGGG 62.863 77.778 0.00 0.00 41.26 4.30
670 692 0.621082 TGGCGAGGAAGAGAGAGAGA 59.379 55.000 0.00 0.00 0.00 3.10
672 694 1.134220 GGCGAGGAAGAGAGAGAGAGA 60.134 57.143 0.00 0.00 0.00 3.10
673 695 1.940613 GCGAGGAAGAGAGAGAGAGAC 59.059 57.143 0.00 0.00 0.00 3.36
674 696 2.679639 GCGAGGAAGAGAGAGAGAGACA 60.680 54.545 0.00 0.00 0.00 3.41
675 697 3.198068 CGAGGAAGAGAGAGAGAGACAG 58.802 54.545 0.00 0.00 0.00 3.51
676 698 3.118775 CGAGGAAGAGAGAGAGAGACAGA 60.119 52.174 0.00 0.00 0.00 3.41
677 699 4.192317 GAGGAAGAGAGAGAGAGACAGAC 58.808 52.174 0.00 0.00 0.00 3.51
678 700 3.587061 AGGAAGAGAGAGAGAGACAGACA 59.413 47.826 0.00 0.00 0.00 3.41
679 701 3.941483 GGAAGAGAGAGAGAGACAGACAG 59.059 52.174 0.00 0.00 0.00 3.51
680 702 4.323485 GGAAGAGAGAGAGAGACAGACAGA 60.323 50.000 0.00 0.00 0.00 3.41
681 703 4.478206 AGAGAGAGAGAGACAGACAGAG 57.522 50.000 0.00 0.00 0.00 3.35
682 704 3.198635 AGAGAGAGAGAGACAGACAGAGG 59.801 52.174 0.00 0.00 0.00 3.69
683 705 3.181329 AGAGAGAGAGACAGACAGAGGA 58.819 50.000 0.00 0.00 0.00 3.71
723 756 4.281941 AGAGAAAACATTTTGGAGAAGGGC 59.718 41.667 0.00 0.00 0.00 5.19
766 802 2.452813 CGTGCTCCGCGTATTTGCT 61.453 57.895 4.92 0.00 32.40 3.91
767 803 1.794222 GTGCTCCGCGTATTTGCTT 59.206 52.632 4.92 0.00 0.00 3.91
770 806 1.135803 TGCTCCGCGTATTTGCTTTTC 60.136 47.619 4.92 0.00 0.00 2.29
771 807 1.135803 GCTCCGCGTATTTGCTTTTCA 60.136 47.619 4.92 0.00 0.00 2.69
780 816 2.746279 TTTGCTTTTCAGTCCCTGGA 57.254 45.000 0.00 0.00 31.51 3.86
782 818 0.250901 TGCTTTTCAGTCCCTGGAGC 60.251 55.000 0.00 0.00 35.03 4.70
783 819 0.250901 GCTTTTCAGTCCCTGGAGCA 60.251 55.000 0.00 0.00 34.80 4.26
875 911 2.754658 TCCTCGTCTCGCCTTCCC 60.755 66.667 0.00 0.00 0.00 3.97
876 912 3.839432 CCTCGTCTCGCCTTCCCC 61.839 72.222 0.00 0.00 0.00 4.81
877 913 3.068691 CTCGTCTCGCCTTCCCCA 61.069 66.667 0.00 0.00 0.00 4.96
954 992 4.897076 CCATTCCATTCCATTCCTCATCAA 59.103 41.667 0.00 0.00 0.00 2.57
958 1002 3.635373 CCATTCCATTCCTCATCAACAGG 59.365 47.826 0.00 0.00 0.00 4.00
975 1019 2.439507 ACAGGCTAGAGAGAGAGAGAGG 59.560 54.545 0.00 0.00 0.00 3.69
980 1024 3.007398 GCTAGAGAGAGAGAGAGGGAGAG 59.993 56.522 0.00 0.00 0.00 3.20
981 1025 2.412591 AGAGAGAGAGAGAGGGAGAGG 58.587 57.143 0.00 0.00 0.00 3.69
1026 1094 4.148825 GTGATGGAGTCGGCGGCT 62.149 66.667 16.62 16.62 0.00 5.52
1027 1095 2.441348 TGATGGAGTCGGCGGCTA 60.441 61.111 16.64 0.00 0.00 3.93
1165 1240 1.520342 GCGCTCCTCCTGTAAGCAG 60.520 63.158 0.00 0.00 42.22 4.24
1166 1241 1.949847 GCGCTCCTCCTGTAAGCAGA 61.950 60.000 0.00 0.00 45.28 4.26
1167 1242 0.749649 CGCTCCTCCTGTAAGCAGAT 59.250 55.000 0.00 0.00 45.28 2.90
1168 1243 1.137872 CGCTCCTCCTGTAAGCAGATT 59.862 52.381 0.00 0.00 45.28 2.40
1169 1244 2.801342 CGCTCCTCCTGTAAGCAGATTC 60.801 54.545 0.00 0.00 45.28 2.52
1170 1245 2.484594 GCTCCTCCTGTAAGCAGATTCC 60.485 54.545 0.00 0.00 45.28 3.01
1171 1246 1.757118 TCCTCCTGTAAGCAGATTCCG 59.243 52.381 0.00 0.00 45.28 4.30
1174 1249 0.179000 CCTGTAAGCAGATTCCGCCT 59.821 55.000 0.00 0.00 45.28 5.52
1213 1318 0.179018 GTCTTGTCTGCTGGTTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
1214 1319 0.550914 TCTTGTCTGCTGGTTGGGTT 59.449 50.000 0.00 0.00 0.00 4.11
1216 1321 0.817634 TTGTCTGCTGGTTGGGTTCG 60.818 55.000 0.00 0.00 0.00 3.95
1219 1324 4.966787 TGCTGGTTGGGTTCGGGC 62.967 66.667 0.00 0.00 0.00 6.13
1220 1325 4.660938 GCTGGTTGGGTTCGGGCT 62.661 66.667 0.00 0.00 0.00 5.19
1221 1326 2.115266 CTGGTTGGGTTCGGGCTT 59.885 61.111 0.00 0.00 0.00 4.35
1222 1327 1.377229 CTGGTTGGGTTCGGGCTTA 59.623 57.895 0.00 0.00 0.00 3.09
1223 1328 0.250989 CTGGTTGGGTTCGGGCTTAA 60.251 55.000 0.00 0.00 0.00 1.85
1240 1349 0.748450 TAATTAGGTCCGGCTGGTCG 59.252 55.000 12.43 0.00 36.30 4.79
1341 1450 2.656002 AGCGGCTAGAGTAGAACATCA 58.344 47.619 0.00 0.00 0.00 3.07
1366 1475 0.245539 CTGCCTGCCTGGTTGATTTG 59.754 55.000 0.00 0.00 38.35 2.32
1377 1486 3.834231 CTGGTTGATTTGGATTTGGACCT 59.166 43.478 0.00 0.00 0.00 3.85
1389 1498 0.976641 TTGGACCTCAGGCTGTACTG 59.023 55.000 15.27 4.24 39.84 2.74
1397 1506 0.171455 CAGGCTGTACTGGACGACTC 59.829 60.000 6.28 0.00 34.84 3.36
1409 1531 1.004560 ACGACTCGTCCCACGTCTA 60.005 57.895 0.00 0.00 43.14 2.59
1417 1539 2.361757 TCGTCCCACGTCTAAACTGAAA 59.638 45.455 0.00 0.00 43.14 2.69
1468 1597 2.625790 CAGGATCTCTTCCCTTAGGACG 59.374 54.545 0.00 0.00 46.81 4.79
1477 1606 2.124695 CTTAGGACGCTTGGGCCC 60.125 66.667 17.59 17.59 34.44 5.80
1478 1607 2.931105 TTAGGACGCTTGGGCCCA 60.931 61.111 24.45 24.45 34.44 5.36
1524 1655 0.389037 GATGCTATGCTCGATGCGGA 60.389 55.000 0.00 0.00 46.63 5.54
1525 1656 0.033920 ATGCTATGCTCGATGCGGAA 59.966 50.000 0.00 0.00 46.63 4.30
1526 1657 0.875908 TGCTATGCTCGATGCGGAAC 60.876 55.000 0.00 0.00 46.63 3.62
1545 1676 2.451693 GCACTGGCGTCGTAAATCA 58.548 52.632 0.00 0.00 0.00 2.57
1546 1677 1.006832 GCACTGGCGTCGTAAATCAT 58.993 50.000 0.00 0.00 0.00 2.45
1547 1678 1.004927 GCACTGGCGTCGTAAATCATC 60.005 52.381 0.00 0.00 0.00 2.92
1560 1691 5.249163 TCGTAAATCATCCATCCATCCATCT 59.751 40.000 0.00 0.00 0.00 2.90
1604 1740 9.606631 GGCCATTTACATTTGATTTTTACCATA 57.393 29.630 0.00 0.00 0.00 2.74
1644 1780 0.764890 TGCCCTGCACTACTTCACTT 59.235 50.000 0.00 0.00 31.71 3.16
1658 1794 7.908601 CACTACTTCACTTTGTTAACTTGTTCC 59.091 37.037 7.22 0.00 0.00 3.62
1664 1800 2.600470 TGTTAACTTGTTCCGACCGT 57.400 45.000 7.22 0.00 0.00 4.83
1666 1802 2.204237 GTTAACTTGTTCCGACCGTGT 58.796 47.619 0.00 0.00 0.00 4.49
1727 1867 2.851263 TGAGGTTTCATGTAGCCGTT 57.149 45.000 0.00 0.00 0.00 4.44
1728 1868 3.134574 TGAGGTTTCATGTAGCCGTTT 57.865 42.857 0.00 0.00 0.00 3.60
1765 1905 1.506493 CTGTGGACAGAGCACAAGAC 58.494 55.000 0.04 0.00 46.59 3.01
1779 2004 1.134946 ACAAGACTGCTTTGTGTTGGC 59.865 47.619 15.06 0.00 42.95 4.52
1834 2062 1.742268 GGCAACTGAAATGGCTCTCTC 59.258 52.381 0.00 0.00 39.99 3.20
1841 2069 6.992664 ACTGAAATGGCTCTCTCTGTATAT 57.007 37.500 0.00 0.00 0.00 0.86
1846 2079 7.288621 TGAAATGGCTCTCTCTGTATATTCTGA 59.711 37.037 0.00 0.00 0.00 3.27
1859 2092 9.217278 TCTGTATATTCTGACTATCCTCGTTAC 57.783 37.037 0.00 0.00 0.00 2.50
1876 2109 9.346005 TCCTCGTTACTTACATGTATCTCATTA 57.654 33.333 6.36 0.00 34.09 1.90
1906 2140 8.598075 GTGTTTTTGTATAATAGGTTCGATCGT 58.402 33.333 15.94 0.00 0.00 3.73
2008 2248 5.106908 CCTTCTGCTTCTGTTAGCTGTTTAC 60.107 44.000 0.00 0.00 41.76 2.01
2034 2274 7.275888 TGGTTATCATCTCACAAAATATGCC 57.724 36.000 0.00 0.00 0.00 4.40
2050 2290 0.605319 TGCCTAGTCGTTTGGCTTGG 60.605 55.000 13.66 0.00 46.37 3.61
2058 2298 1.151172 CGTTTGGCTTGGCAACCAAC 61.151 55.000 24.34 19.31 45.42 3.77
2073 2313 6.127758 TGGCAACCAACATTTTATACTAGCTG 60.128 38.462 0.00 0.00 0.00 4.24
2074 2314 6.265577 GCAACCAACATTTTATACTAGCTGG 58.734 40.000 0.00 0.00 0.00 4.85
2115 2383 6.321181 TCTGTTTGGTTGCAGTCTTTTATCTT 59.679 34.615 0.00 0.00 34.57 2.40
2119 2387 8.349983 GTTTGGTTGCAGTCTTTTATCTTCTTA 58.650 33.333 0.00 0.00 0.00 2.10
2166 2434 8.581253 AAGTTTATTATAGCTTTGCCACTCTT 57.419 30.769 0.00 0.00 0.00 2.85
2202 2470 3.341823 AGTAGATGCACTTGCTCCTTTG 58.658 45.455 2.33 0.00 42.66 2.77
2242 2510 4.072131 ACAAACTGTGCGGTGATCTAAAT 58.928 39.130 0.00 0.00 0.00 1.40
2243 2511 5.242434 ACAAACTGTGCGGTGATCTAAATA 58.758 37.500 0.00 0.00 0.00 1.40
2256 2524 8.169268 CGGTGATCTAAATAAACAGTTCTGTTC 58.831 37.037 16.82 4.18 0.00 3.18
2275 2543 1.145598 ACAGATCAGGAGCCATGCG 59.854 57.895 0.00 0.00 0.00 4.73
2371 2639 1.729284 CACACCCGTACCCACATAAC 58.271 55.000 0.00 0.00 0.00 1.89
2398 2666 5.480422 AGCCTCGAAAAAGGGTAATCATTTT 59.520 36.000 0.00 0.00 45.19 1.82
2483 2755 3.991725 CTCCTGCAGCCCCTGAAGC 62.992 68.421 8.66 0.00 35.87 3.86
2499 2771 1.405105 GAAGCTGACTTGCCACAACAA 59.595 47.619 0.00 0.00 35.82 2.83
2509 2781 1.702401 TGCCACAACAACCTCCTCATA 59.298 47.619 0.00 0.00 0.00 2.15
2714 2990 4.900635 ACCACTAACTTGTTTGCTCTTG 57.099 40.909 0.00 0.00 0.00 3.02
2926 3202 2.175878 ACATGCTGGAGACTGTTGTC 57.824 50.000 0.00 0.00 43.22 3.18
2988 3264 0.958091 TATGGTGGCAACTGTTGTGC 59.042 50.000 20.57 9.02 37.61 4.57
3008 3284 7.839680 TGTGCCTATACTAAGATTCATCTGA 57.160 36.000 0.00 0.00 37.19 3.27
3040 3316 9.797642 TTAGATGTAAACTGGAATGCATGATAT 57.202 29.630 0.00 0.00 0.00 1.63
3058 3334 8.033038 GCATGATATGTGCAAATTCTATTCCAT 58.967 33.333 0.00 0.00 42.08 3.41
3071 3347 9.435688 AAATTCTATTCCATTTGTTAAAGTGCC 57.564 29.630 0.00 0.00 0.00 5.01
3074 3404 4.599047 TTCCATTTGTTAAAGTGCCTGG 57.401 40.909 0.00 0.00 0.00 4.45
3088 3418 1.824230 TGCCTGGTATGTGCAAATTCC 59.176 47.619 5.58 5.58 30.85 3.01
3149 3479 7.871463 AGTACACTAACAAGGCTAGTTTAACTG 59.129 37.037 8.00 0.00 0.00 3.16
3207 3537 4.709397 TGTCAATCAGTGTGTTTTTCCCTT 59.291 37.500 0.00 0.00 0.00 3.95
3261 3591 5.591877 GCTTACCTTCATTCTGTCCATCAAT 59.408 40.000 0.00 0.00 0.00 2.57
3263 3593 7.630242 TTACCTTCATTCTGTCCATCAATTC 57.370 36.000 0.00 0.00 0.00 2.17
3270 3600 5.988310 TTCTGTCCATCAATTCTTGCAAT 57.012 34.783 0.00 0.00 0.00 3.56
3297 3627 3.819337 CCATAATGCTCTTGATGTCTGGG 59.181 47.826 0.00 0.00 0.00 4.45
3385 3716 7.869429 CCTTTGATGGCCTTGATATTAATCAAC 59.131 37.037 3.32 0.00 45.17 3.18
3386 3717 7.894753 TTGATGGCCTTGATATTAATCAACA 57.105 32.000 3.32 0.00 45.17 3.33
3392 3723 7.980662 TGGCCTTGATATTAATCAACATGTTTG 59.019 33.333 8.77 5.07 45.17 2.93
3403 3734 4.187694 TCAACATGTTTGCCTTTTTGGTC 58.812 39.130 8.77 0.00 38.35 4.02
3420 3751 4.603094 TGGTCTATCAGTTCCCAGTCTA 57.397 45.455 0.00 0.00 0.00 2.59
3424 3755 5.163499 GGTCTATCAGTTCCCAGTCTAACAG 60.163 48.000 0.00 0.00 0.00 3.16
3894 4230 9.897744 CAGATGCTTACTTTGTTCATTCTTTTA 57.102 29.630 0.00 0.00 0.00 1.52
3919 4255 6.727824 CAGTTAAAATGTACTGTCAGGGAG 57.272 41.667 4.53 0.00 37.56 4.30
3922 4258 3.594603 AAATGTACTGTCAGGGAGTCG 57.405 47.619 4.53 0.00 0.00 4.18
3979 4315 9.866655 ACAATGATCTTTTTATGGGCTAATCTA 57.133 29.630 0.00 0.00 0.00 1.98
4094 4436 7.520614 GCACACCATCTGCTTAATATTTACTCC 60.521 40.741 0.00 0.00 0.00 3.85
4167 4509 3.377485 TGTAGACTAGAAGTAGCTTGCGG 59.623 47.826 0.00 0.00 0.00 5.69
4200 4542 6.002062 ACAGTTCTCGAATTGTTTTCCATC 57.998 37.500 2.44 0.00 37.91 3.51
4230 4572 7.665559 ACATCCACATTAGTGTCACAACTATTT 59.334 33.333 5.62 0.00 44.39 1.40
4232 4574 8.458573 TCCACATTAGTGTCACAACTATTTTT 57.541 30.769 5.62 0.00 44.39 1.94
4233 4575 9.562408 TCCACATTAGTGTCACAACTATTTTTA 57.438 29.630 5.62 0.00 44.39 1.52
4284 4626 2.892215 TGCTTCATTTGTGAATCTGCCA 59.108 40.909 0.00 0.00 0.00 4.92
4308 4652 9.832445 CCACAACTTGTAGTACTAATCCATTAT 57.168 33.333 3.61 0.00 0.00 1.28
4378 4722 2.239654 CCAGTTATGGTCCACTCCATGT 59.760 50.000 8.27 0.00 46.27 3.21
4396 4740 4.671964 CCATGTTGCACAATAATCGAATCG 59.328 41.667 0.00 0.00 0.00 3.34
4397 4741 4.271590 TGTTGCACAATAATCGAATCGG 57.728 40.909 1.76 0.00 0.00 4.18
4444 4871 3.763897 AGTAAATGGCAGGATGGTGTTTC 59.236 43.478 0.00 0.00 35.86 2.78
4524 4951 7.320384 TGAGATCATTTCATGCTCCCTAATA 57.680 36.000 0.00 0.00 0.00 0.98
4531 4958 3.402110 TCATGCTCCCTAATATGTTGCG 58.598 45.455 0.00 0.00 0.00 4.85
4645 5072 2.935238 GCCAAGCACAAGATCGTAGGAA 60.935 50.000 0.00 0.00 0.00 3.36
4672 5101 1.174783 GTCTACTCAGACCCTTCGCA 58.825 55.000 0.00 0.00 44.72 5.10
4705 5134 5.202004 TGTAATCTCTAGTCACCCTCTTCC 58.798 45.833 0.00 0.00 0.00 3.46
4719 5148 0.614697 TCTTCCTGAGCACGGATCCA 60.615 55.000 13.41 0.00 0.00 3.41
4728 5157 2.514592 ACGGATCCATGCTTGCGG 60.515 61.111 13.41 0.00 0.00 5.69
4858 5296 2.653726 TGTCAGAGGTGCAACATGTTT 58.346 42.857 8.77 0.00 39.98 2.83
4869 5307 2.288334 GCAACATGTTTCTGCATCACCA 60.288 45.455 8.77 0.00 36.09 4.17
4902 5340 8.723942 ATGTTTGTACATAGTTCTTGGAGATC 57.276 34.615 0.00 0.00 43.12 2.75
4913 5351 2.305927 TCTTGGAGATCTTTTCGGGCTT 59.694 45.455 0.00 0.00 0.00 4.35
4922 5360 5.946377 AGATCTTTTCGGGCTTTTAGATGTT 59.054 36.000 0.00 0.00 0.00 2.71
4942 5380 9.965902 AGATGTTGGAACTTTTATCTATCTGTT 57.034 29.630 0.00 0.00 0.00 3.16
5022 5460 4.017126 GGGAGAGGGGAAAGTGTTTATTG 58.983 47.826 0.00 0.00 0.00 1.90
5042 5480 0.250166 CCCACGAAGGAAGACCGTTT 60.250 55.000 0.00 0.00 41.22 3.60
5043 5481 1.145803 CCACGAAGGAAGACCGTTTC 58.854 55.000 0.00 0.00 41.22 2.78
5063 5501 7.274686 CCGTTTCTGTGTGTAATTCTTTGTTTT 59.725 33.333 0.00 0.00 0.00 2.43
5067 5505 6.972328 TCTGTGTGTAATTCTTTGTTTTGAGC 59.028 34.615 0.00 0.00 0.00 4.26
5072 5510 8.196771 TGTGTAATTCTTTGTTTTGAGCTGATT 58.803 29.630 0.00 0.00 0.00 2.57
5073 5511 9.034544 GTGTAATTCTTTGTTTTGAGCTGATTT 57.965 29.630 0.00 0.00 0.00 2.17
5074 5512 9.598517 TGTAATTCTTTGTTTTGAGCTGATTTT 57.401 25.926 0.00 0.00 0.00 1.82
5075 5513 9.853921 GTAATTCTTTGTTTTGAGCTGATTTTG 57.146 29.630 0.00 0.00 0.00 2.44
5086 5556 6.072112 TGAGCTGATTTTGTTTGTAAGTCC 57.928 37.500 0.00 0.00 0.00 3.85
5104 5574 8.856103 TGTAAGTCCATTATCTTCATCGTCATA 58.144 33.333 0.00 0.00 0.00 2.15
5105 5575 9.862371 GTAAGTCCATTATCTTCATCGTCATAT 57.138 33.333 0.00 0.00 0.00 1.78
5153 5625 3.315749 AGTGAACTCTTTTCGTCTCGTCT 59.684 43.478 0.00 0.00 0.00 4.18
5154 5626 4.514441 AGTGAACTCTTTTCGTCTCGTCTA 59.486 41.667 0.00 0.00 0.00 2.59
5158 5630 6.370994 TGAACTCTTTTCGTCTCGTCTACTAT 59.629 38.462 0.00 0.00 0.00 2.12
5159 5631 6.348621 ACTCTTTTCGTCTCGTCTACTATC 57.651 41.667 0.00 0.00 0.00 2.08
5162 5634 7.066043 ACTCTTTTCGTCTCGTCTACTATCATT 59.934 37.037 0.00 0.00 0.00 2.57
5163 5635 7.187480 TCTTTTCGTCTCGTCTACTATCATTG 58.813 38.462 0.00 0.00 0.00 2.82
5165 5637 6.862711 TTCGTCTCGTCTACTATCATTGAT 57.137 37.500 4.28 4.28 0.00 2.57
5166 5638 6.469139 TCGTCTCGTCTACTATCATTGATC 57.531 41.667 1.55 0.00 0.00 2.92
5167 5639 5.989777 TCGTCTCGTCTACTATCATTGATCA 59.010 40.000 1.55 0.00 0.00 2.92
5168 5640 6.651225 TCGTCTCGTCTACTATCATTGATCAT 59.349 38.462 1.55 0.00 0.00 2.45
5201 5694 6.408039 CCGAACGAAAAATGATAATCAAGTCG 59.592 38.462 0.00 0.00 0.00 4.18
5213 5706 6.697455 TGATAATCAAGTCGTCAATCAGCTAC 59.303 38.462 0.00 0.00 0.00 3.58
5216 5709 5.236655 TCAAGTCGTCAATCAGCTACTAG 57.763 43.478 0.00 0.00 0.00 2.57
5222 5715 4.805719 TCGTCAATCAGCTACTAGCATTTG 59.194 41.667 10.73 10.07 45.56 2.32
5223 5716 4.551603 CGTCAATCAGCTACTAGCATTTGC 60.552 45.833 10.73 0.00 45.56 3.68
5228 5721 3.691118 TCAGCTACTAGCATTTGCCAAAG 59.309 43.478 10.73 0.00 45.56 2.77
5233 5726 2.629617 ACTAGCATTTGCCAAAGTTGCT 59.370 40.909 19.01 19.01 43.38 3.91
5272 5767 6.376978 CAAAAGAACTGGACTTGATTAGCTG 58.623 40.000 0.00 0.00 0.00 4.24
5297 5792 7.222611 TGCTTCAGAAAAGAACAAAATGCTAAC 59.777 33.333 0.00 0.00 0.00 2.34
5300 5795 7.771183 TCAGAAAAGAACAAAATGCTAACAGT 58.229 30.769 0.00 0.00 0.00 3.55
5328 5859 9.807921 TTTTTATTTAGAGTGGAGTCAAAGGAT 57.192 29.630 0.00 0.00 0.00 3.24
5412 5946 0.545787 CTACCCACTACCCACCACCA 60.546 60.000 0.00 0.00 0.00 4.17
5519 6077 1.497161 CACCCGGACTCTAAATCCCT 58.503 55.000 0.73 0.00 31.99 4.20
5521 6079 1.838077 ACCCGGACTCTAAATCCCTTG 59.162 52.381 0.73 0.00 31.99 3.61
5522 6080 1.475213 CCCGGACTCTAAATCCCTTGC 60.475 57.143 0.73 0.00 31.99 4.01
5523 6081 1.486726 CCGGACTCTAAATCCCTTGCT 59.513 52.381 0.00 0.00 31.99 3.91
5524 6082 2.483889 CCGGACTCTAAATCCCTTGCTC 60.484 54.545 0.00 0.00 31.99 4.26
5526 6084 2.774809 GGACTCTAAATCCCTTGCTCCT 59.225 50.000 0.00 0.00 0.00 3.69
5527 6085 3.181459 GGACTCTAAATCCCTTGCTCCTC 60.181 52.174 0.00 0.00 0.00 3.71
5528 6086 3.709141 GACTCTAAATCCCTTGCTCCTCT 59.291 47.826 0.00 0.00 0.00 3.69
5531 6089 1.673767 AAATCCCTTGCTCCTCTCCA 58.326 50.000 0.00 0.00 0.00 3.86
5534 6092 2.581354 CCTTGCTCCTCTCCACCG 59.419 66.667 0.00 0.00 0.00 4.94
5536 6094 1.984570 CTTGCTCCTCTCCACCGGA 60.985 63.158 9.46 0.00 0.00 5.14
5537 6095 1.535444 TTGCTCCTCTCCACCGGAA 60.535 57.895 9.46 0.00 0.00 4.30
5538 6096 1.125093 TTGCTCCTCTCCACCGGAAA 61.125 55.000 9.46 0.00 0.00 3.13
5540 6098 1.597461 CTCCTCTCCACCGGAAACC 59.403 63.158 9.46 0.00 0.00 3.27
5541 6099 0.905337 CTCCTCTCCACCGGAAACCT 60.905 60.000 9.46 0.00 0.00 3.50
5542 6100 0.473117 TCCTCTCCACCGGAAACCTT 60.473 55.000 9.46 0.00 0.00 3.50
5543 6101 0.321653 CCTCTCCACCGGAAACCTTG 60.322 60.000 9.46 0.00 0.00 3.61
5544 6102 0.685097 CTCTCCACCGGAAACCTTGA 59.315 55.000 9.46 0.00 0.00 3.02
5545 6103 0.395312 TCTCCACCGGAAACCTTGAC 59.605 55.000 9.46 0.00 0.00 3.18
5546 6104 0.605589 CTCCACCGGAAACCTTGACC 60.606 60.000 9.46 0.00 0.00 4.02
5547 6105 1.964373 CCACCGGAAACCTTGACCG 60.964 63.158 9.46 0.00 45.24 4.79
5566 6124 2.270205 CCGAGGAGGCAGCACATT 59.730 61.111 0.00 0.00 0.00 2.71
5609 6167 3.067461 GTCTGGTCTGCTAGATTGATCGT 59.933 47.826 0.00 0.00 34.72 3.73
5744 6306 2.423898 CCGTCCACCGTCCAGCTAT 61.424 63.158 0.00 0.00 33.66 2.97
5745 6307 1.515954 CGTCCACCGTCCAGCTATT 59.484 57.895 0.00 0.00 0.00 1.73
5746 6308 0.742505 CGTCCACCGTCCAGCTATTA 59.257 55.000 0.00 0.00 0.00 0.98
5747 6309 1.269102 CGTCCACCGTCCAGCTATTAG 60.269 57.143 0.00 0.00 0.00 1.73
5748 6310 0.750850 TCCACCGTCCAGCTATTAGC 59.249 55.000 7.64 7.64 42.84 3.09
5750 6312 0.464036 CACCGTCCAGCTATTAGCCA 59.536 55.000 12.05 0.00 43.77 4.75
5917 6479 4.335647 CTGGTTGGCTCCCGCACT 62.336 66.667 0.00 0.00 38.10 4.40
5920 6482 2.663196 GTTGGCTCCCGCACTACT 59.337 61.111 0.00 0.00 38.10 2.57
5924 6486 4.082523 GCTCCCGCACTACTGCCA 62.083 66.667 0.00 0.00 40.73 4.92
5927 6489 1.960040 CTCCCGCACTACTGCCATGA 61.960 60.000 0.00 0.00 40.73 3.07
5930 6492 1.202639 CCCGCACTACTGCCATGATAA 60.203 52.381 0.00 0.00 40.73 1.75
5951 6519 0.983467 TGATGCCCTGCTGTTACTCA 59.017 50.000 0.00 0.00 0.00 3.41
5958 6526 3.623510 GCCCTGCTGTTACTCAGTTATTC 59.376 47.826 0.00 0.00 45.23 1.75
5971 6541 6.981722 ACTCAGTTATTCCGCAAGAAAAATT 58.018 32.000 0.00 0.00 38.21 1.82
5972 6542 8.106247 ACTCAGTTATTCCGCAAGAAAAATTA 57.894 30.769 0.00 0.00 38.21 1.40
5973 6543 8.021396 ACTCAGTTATTCCGCAAGAAAAATTAC 58.979 33.333 0.00 0.00 38.21 1.89
5974 6544 7.877003 TCAGTTATTCCGCAAGAAAAATTACA 58.123 30.769 0.00 0.00 38.21 2.41
5975 6545 8.020819 TCAGTTATTCCGCAAGAAAAATTACAG 58.979 33.333 0.00 0.00 38.21 2.74
5997 6567 5.177142 CAGTACTAATTAGCAGCTGAGCATG 59.823 44.000 20.43 3.24 36.85 4.06
5998 6568 4.148128 ACTAATTAGCAGCTGAGCATGT 57.852 40.909 20.43 3.68 36.85 3.21
6009 6582 3.558829 AGCTGAGCATGTACAAATGATCG 59.441 43.478 7.39 1.44 44.17 3.69
6028 6601 7.905604 TGATCGCCATTTCTTTATAGGTATG 57.094 36.000 0.00 0.00 0.00 2.39
6029 6602 7.676004 TGATCGCCATTTCTTTATAGGTATGA 58.324 34.615 0.00 0.00 0.00 2.15
6034 6607 8.088981 CGCCATTTCTTTATAGGTATGAGTACT 58.911 37.037 0.00 0.00 0.00 2.73
6035 6608 9.425577 GCCATTTCTTTATAGGTATGAGTACTC 57.574 37.037 16.32 16.32 0.00 2.59
6058 6631 9.176460 ACTCTATTATAGGTATCTAAAGTCCGC 57.824 37.037 0.00 0.00 0.00 5.54
6064 6637 4.284178 AGGTATCTAAAGTCCGCTACCAA 58.716 43.478 0.00 0.00 32.78 3.67
6075 6648 1.002900 CCGCTACCAACACACAGTTTG 60.003 52.381 0.00 0.00 38.74 2.93
6107 6687 5.871396 TCTAAGTCAGTTCCAAGTGTTCT 57.129 39.130 0.00 0.00 0.00 3.01
6123 6703 9.843334 CCAAGTGTTCTTTTCTACTACTACTAG 57.157 37.037 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.814010 ACGTTTGTCTGTCTGTGCCC 60.814 55.000 0.00 0.00 0.00 5.36
42 43 1.522668 CTGCGACATGAACCCTTTCA 58.477 50.000 0.00 0.00 45.93 2.69
43 44 0.804989 CCTGCGACATGAACCCTTTC 59.195 55.000 0.00 0.00 0.00 2.62
45 46 0.400213 TTCCTGCGACATGAACCCTT 59.600 50.000 0.00 0.00 0.00 3.95
46 47 0.036010 CTTCCTGCGACATGAACCCT 60.036 55.000 0.00 0.00 0.00 4.34
47 48 0.036388 TCTTCCTGCGACATGAACCC 60.036 55.000 0.00 0.00 0.00 4.11
49 50 1.079503 GGTCTTCCTGCGACATGAAC 58.920 55.000 0.00 0.00 33.11 3.18
51 52 1.215382 CGGTCTTCCTGCGACATGA 59.785 57.895 0.00 0.00 33.11 3.07
52 53 1.811266 CCGGTCTTCCTGCGACATG 60.811 63.158 0.00 0.00 33.11 3.21
54 55 4.373116 GCCGGTCTTCCTGCGACA 62.373 66.667 1.90 0.00 34.54 4.35
56 57 4.373116 GTGCCGGTCTTCCTGCGA 62.373 66.667 1.90 0.00 45.01 5.10
57 58 4.680237 TGTGCCGGTCTTCCTGCG 62.680 66.667 1.90 0.00 45.01 5.18
58 59 2.167398 TAGTGTGCCGGTCTTCCTGC 62.167 60.000 1.90 0.00 42.91 4.85
59 60 0.108615 CTAGTGTGCCGGTCTTCCTG 60.109 60.000 1.90 0.00 0.00 3.86
60 61 1.889530 GCTAGTGTGCCGGTCTTCCT 61.890 60.000 1.90 0.00 0.00 3.36
61 62 1.448013 GCTAGTGTGCCGGTCTTCC 60.448 63.158 1.90 0.00 0.00 3.46
62 63 0.737715 CTGCTAGTGTGCCGGTCTTC 60.738 60.000 1.90 0.00 0.00 2.87
63 64 1.293498 CTGCTAGTGTGCCGGTCTT 59.707 57.895 1.90 0.00 0.00 3.01
64 65 2.973899 CTGCTAGTGTGCCGGTCT 59.026 61.111 1.90 0.00 0.00 3.85
65 66 2.815647 GCTGCTAGTGTGCCGGTC 60.816 66.667 1.90 0.00 0.00 4.79
66 67 3.177194 TTGCTGCTAGTGTGCCGGT 62.177 57.895 1.90 0.00 0.00 5.28
67 68 2.358615 TTGCTGCTAGTGTGCCGG 60.359 61.111 0.00 0.00 0.00 6.13
68 69 1.904852 CTGTTGCTGCTAGTGTGCCG 61.905 60.000 0.00 0.00 0.00 5.69
69 70 0.603707 TCTGTTGCTGCTAGTGTGCC 60.604 55.000 0.00 0.00 0.00 5.01
74 75 0.668706 CGCTGTCTGTTGCTGCTAGT 60.669 55.000 0.00 0.00 0.00 2.57
77 78 3.352222 GCGCTGTCTGTTGCTGCT 61.352 61.111 0.00 0.00 0.00 4.24
112 113 0.910088 GAGGCCCCCAAGTGAGTAGT 60.910 60.000 0.00 0.00 0.00 2.73
113 114 1.908483 GAGGCCCCCAAGTGAGTAG 59.092 63.158 0.00 0.00 0.00 2.57
115 116 3.322466 CGAGGCCCCCAAGTGAGT 61.322 66.667 0.00 0.00 0.00 3.41
144 145 1.227031 TTGCTGTTGCTGTTGCTGC 60.227 52.632 0.00 0.00 40.48 5.25
173 176 4.164204 AGATTTTAGCCTAGCCCCTAGAG 58.836 47.826 0.00 0.00 36.26 2.43
209 212 1.895231 GCCCGCCCCGGTTAATTAG 60.895 63.158 0.00 0.00 46.80 1.73
277 286 4.533815 TGAGCTAGATTTCCTTCGACCTA 58.466 43.478 0.00 0.00 0.00 3.08
278 287 3.366396 TGAGCTAGATTTCCTTCGACCT 58.634 45.455 0.00 0.00 0.00 3.85
279 288 3.802948 TGAGCTAGATTTCCTTCGACC 57.197 47.619 0.00 0.00 0.00 4.79
286 295 2.548920 CCGTGGGATGAGCTAGATTTCC 60.549 54.545 0.00 0.00 0.00 3.13
373 384 0.324738 TGCAGGAGGAGGATTCTCGT 60.325 55.000 0.00 0.00 40.85 4.18
376 387 0.619832 TGCTGCAGGAGGAGGATTCT 60.620 55.000 17.12 0.00 33.18 2.40
414 425 0.611714 TTTCCCCCGTCTAACTCTGC 59.388 55.000 0.00 0.00 0.00 4.26
416 427 1.274447 CGTTTTCCCCCGTCTAACTCT 59.726 52.381 0.00 0.00 0.00 3.24
417 428 1.273327 TCGTTTTCCCCCGTCTAACTC 59.727 52.381 0.00 0.00 0.00 3.01
419 430 1.800586 GTTCGTTTTCCCCCGTCTAAC 59.199 52.381 0.00 0.00 0.00 2.34
420 431 1.605202 CGTTCGTTTTCCCCCGTCTAA 60.605 52.381 0.00 0.00 0.00 2.10
421 432 0.038343 CGTTCGTTTTCCCCCGTCTA 60.038 55.000 0.00 0.00 0.00 2.59
422 433 1.301165 CGTTCGTTTTCCCCCGTCT 60.301 57.895 0.00 0.00 0.00 4.18
423 434 1.287041 CTCGTTCGTTTTCCCCCGTC 61.287 60.000 0.00 0.00 0.00 4.79
424 435 1.301165 CTCGTTCGTTTTCCCCCGT 60.301 57.895 0.00 0.00 0.00 5.28
425 436 2.030958 CCTCGTTCGTTTTCCCCCG 61.031 63.158 0.00 0.00 0.00 5.73
430 450 0.110956 GCGGTTCCTCGTTCGTTTTC 60.111 55.000 0.00 0.00 0.00 2.29
450 470 4.951963 CTCGGAATCGCGAGGCCC 62.952 72.222 16.66 14.14 36.13 5.80
451 471 4.951963 CCTCGGAATCGCGAGGCC 62.952 72.222 21.02 17.11 44.06 5.19
457 477 3.235355 GATTCGCCTCGGAATCGC 58.765 61.111 0.13 0.00 41.88 4.58
510 531 2.335011 GAAAACCCAGGTGCGTGC 59.665 61.111 0.00 0.00 0.00 5.34
511 532 2.903547 CGGAAAACCCAGGTGCGTG 61.904 63.158 0.00 0.00 34.14 5.34
512 533 2.593436 CGGAAAACCCAGGTGCGT 60.593 61.111 0.00 0.00 34.14 5.24
578 599 4.114997 CACCCAAATCCGCCGCAC 62.115 66.667 0.00 0.00 0.00 5.34
581 602 3.508840 GAGCACCCAAATCCGCCG 61.509 66.667 0.00 0.00 0.00 6.46
617 638 1.725169 CGATCTCTCCCTCCCCCTCT 61.725 65.000 0.00 0.00 0.00 3.69
628 650 0.537600 TCATCCCCGTCCGATCTCTC 60.538 60.000 0.00 0.00 0.00 3.20
629 651 0.113385 ATCATCCCCGTCCGATCTCT 59.887 55.000 0.00 0.00 0.00 3.10
670 692 1.899142 GCTTCCTTCCTCTGTCTGTCT 59.101 52.381 0.00 0.00 0.00 3.41
672 694 2.022718 AGCTTCCTTCCTCTGTCTGT 57.977 50.000 0.00 0.00 0.00 3.41
673 695 3.259374 TGTTAGCTTCCTTCCTCTGTCTG 59.741 47.826 0.00 0.00 0.00 3.51
674 696 3.511477 TGTTAGCTTCCTTCCTCTGTCT 58.489 45.455 0.00 0.00 0.00 3.41
675 697 3.368948 CCTGTTAGCTTCCTTCCTCTGTC 60.369 52.174 0.00 0.00 0.00 3.51
676 698 2.569404 CCTGTTAGCTTCCTTCCTCTGT 59.431 50.000 0.00 0.00 0.00 3.41
677 699 2.834549 TCCTGTTAGCTTCCTTCCTCTG 59.165 50.000 0.00 0.00 0.00 3.35
678 700 3.103742 CTCCTGTTAGCTTCCTTCCTCT 58.896 50.000 0.00 0.00 0.00 3.69
679 701 3.100671 TCTCCTGTTAGCTTCCTTCCTC 58.899 50.000 0.00 0.00 0.00 3.71
680 702 3.103742 CTCTCCTGTTAGCTTCCTTCCT 58.896 50.000 0.00 0.00 0.00 3.36
681 703 3.100671 TCTCTCCTGTTAGCTTCCTTCC 58.899 50.000 0.00 0.00 0.00 3.46
682 704 4.020543 TCTCTCTCCTGTTAGCTTCCTTC 58.979 47.826 0.00 0.00 0.00 3.46
683 705 4.054359 TCTCTCTCCTGTTAGCTTCCTT 57.946 45.455 0.00 0.00 0.00 3.36
886 922 3.721706 CTCCACCCCTCACCTGCC 61.722 72.222 0.00 0.00 0.00 4.85
887 923 3.721706 CCTCCACCCCTCACCTGC 61.722 72.222 0.00 0.00 0.00 4.85
890 926 1.990614 GAGTCCTCCACCCCTCACC 60.991 68.421 0.00 0.00 0.00 4.02
891 927 1.079438 AGAGTCCTCCACCCCTCAC 59.921 63.158 0.00 0.00 0.00 3.51
892 928 1.079256 CAGAGTCCTCCACCCCTCA 59.921 63.158 0.00 0.00 0.00 3.86
893 929 2.363172 GCAGAGTCCTCCACCCCTC 61.363 68.421 0.00 0.00 0.00 4.30
894 930 2.284995 GCAGAGTCCTCCACCCCT 60.285 66.667 0.00 0.00 0.00 4.79
895 931 2.284995 AGCAGAGTCCTCCACCCC 60.285 66.667 0.00 0.00 0.00 4.95
899 935 2.288778 CCAGCAGCAGAGTCCTCCA 61.289 63.158 0.00 0.00 0.00 3.86
925 961 4.231426 AGGAATGGAATGGAATGGAACTCT 59.769 41.667 0.00 0.00 0.00 3.24
926 962 4.540715 AGGAATGGAATGGAATGGAACTC 58.459 43.478 0.00 0.00 0.00 3.01
927 963 4.017222 TGAGGAATGGAATGGAATGGAACT 60.017 41.667 0.00 0.00 0.00 3.01
954 992 2.439507 CCTCTCTCTCTCTCTAGCCTGT 59.560 54.545 0.00 0.00 0.00 4.00
958 1002 2.972713 TCTCCCTCTCTCTCTCTCTAGC 59.027 54.545 0.00 0.00 0.00 3.42
975 1019 2.206536 CGCCTCAGATCCCCTCTCC 61.207 68.421 0.00 0.00 29.16 3.71
980 1024 3.866582 CCCACGCCTCAGATCCCC 61.867 72.222 0.00 0.00 0.00 4.81
981 1025 3.083997 ACCCACGCCTCAGATCCC 61.084 66.667 0.00 0.00 0.00 3.85
1119 1194 3.934391 CTTGTCGTGCTCCGGGTCC 62.934 68.421 0.00 0.00 37.11 4.46
1165 1240 2.506472 GGTGGAGGAGGCGGAATC 59.494 66.667 0.00 0.00 0.00 2.52
1166 1241 3.090532 GGGTGGAGGAGGCGGAAT 61.091 66.667 0.00 0.00 0.00 3.01
1192 1297 1.546323 CCCAACCAGCAGACAAGACAT 60.546 52.381 0.00 0.00 0.00 3.06
1213 1318 1.139455 CCGGACCTAATTAAGCCCGAA 59.861 52.381 10.09 0.00 40.33 4.30
1214 1319 0.754472 CCGGACCTAATTAAGCCCGA 59.246 55.000 10.09 0.00 40.33 5.14
1216 1321 0.472898 AGCCGGACCTAATTAAGCCC 59.527 55.000 5.05 0.00 0.00 5.19
1219 1324 2.802057 CGACCAGCCGGACCTAATTAAG 60.802 54.545 5.05 0.00 35.59 1.85
1220 1325 1.137479 CGACCAGCCGGACCTAATTAA 59.863 52.381 5.05 0.00 35.59 1.40
1221 1326 0.748450 CGACCAGCCGGACCTAATTA 59.252 55.000 5.05 0.00 35.59 1.40
1222 1327 1.520666 CGACCAGCCGGACCTAATT 59.479 57.895 5.05 0.00 35.59 1.40
1223 1328 3.217231 CGACCAGCCGGACCTAAT 58.783 61.111 5.05 0.00 35.59 1.73
1240 1349 3.532155 AGCCGATGGACGAGCTCC 61.532 66.667 8.47 0.00 45.77 4.70
1244 1353 4.933064 GGCGAGCCGATGGACGAG 62.933 72.222 0.00 0.00 45.77 4.18
1323 1432 2.287909 GCCTGATGTTCTACTCTAGCCG 60.288 54.545 0.00 0.00 0.00 5.52
1357 1466 3.831911 TGAGGTCCAAATCCAAATCAACC 59.168 43.478 0.00 0.00 0.00 3.77
1366 1475 0.329596 ACAGCCTGAGGTCCAAATCC 59.670 55.000 0.00 0.00 0.00 3.01
1377 1486 0.251209 AGTCGTCCAGTACAGCCTGA 60.251 55.000 0.00 0.00 34.23 3.86
1401 1510 4.392138 GGGATTCTTTCAGTTTAGACGTGG 59.608 45.833 0.00 0.00 0.00 4.94
1404 1513 4.575885 TGGGGATTCTTTCAGTTTAGACG 58.424 43.478 0.00 0.00 0.00 4.18
1409 1531 4.402616 TCCATGGGGATTCTTTCAGTTT 57.597 40.909 13.02 0.00 38.64 2.66
1417 1539 1.342374 GCCAAGTTCCATGGGGATTCT 60.342 52.381 13.02 0.75 44.48 2.40
1468 1597 4.733542 TAACCGCTGGGCCCAAGC 62.734 66.667 28.29 27.60 36.48 4.01
1527 1658 1.004927 GATGATTTACGACGCCAGTGC 60.005 52.381 0.00 0.00 0.00 4.40
1531 1662 2.479837 GATGGATGATTTACGACGCCA 58.520 47.619 0.00 0.00 0.00 5.69
1539 1670 6.458630 ACAGATGGATGGATGGATGATTTA 57.541 37.500 0.00 0.00 0.00 1.40
1544 1675 4.202493 TGGTAACAGATGGATGGATGGATG 60.202 45.833 0.00 0.00 46.17 3.51
1545 1676 3.982730 TGGTAACAGATGGATGGATGGAT 59.017 43.478 0.00 0.00 46.17 3.41
1546 1677 3.392730 TGGTAACAGATGGATGGATGGA 58.607 45.455 0.00 0.00 46.17 3.41
1547 1678 3.862877 TGGTAACAGATGGATGGATGG 57.137 47.619 0.00 0.00 46.17 3.51
1612 1748 8.163408 AGTAGTGCAGGGCAATATGATTAATTA 58.837 33.333 1.57 0.00 41.02 1.40
1644 1780 2.608546 CACGGTCGGAACAAGTTAACAA 59.391 45.455 8.61 0.00 0.00 2.83
1666 1802 2.284625 AGGACGATGTGGAGGCCA 60.285 61.111 5.01 0.00 0.00 5.36
1698 1837 7.244192 GCTACATGAAACCTCAATGTTAAGTC 58.756 38.462 0.00 0.00 34.49 3.01
1779 2004 0.741221 GAAGCAGACGGCCTAAGGTG 60.741 60.000 0.00 0.00 46.50 4.00
1834 2062 9.221933 AGTAACGAGGATAGTCAGAATATACAG 57.778 37.037 2.93 0.00 0.00 2.74
1841 2069 7.338703 ACATGTAAGTAACGAGGATAGTCAGAA 59.661 37.037 0.00 0.00 0.00 3.02
1846 2079 8.921353 AGATACATGTAAGTAACGAGGATAGT 57.079 34.615 10.14 0.00 0.00 2.12
1906 2140 4.206477 TGCTTCGATCTTTCTCCAATCA 57.794 40.909 0.00 0.00 0.00 2.57
2008 2248 7.864379 GGCATATTTTGTGAGATGATAACCAAG 59.136 37.037 0.00 0.00 0.00 3.61
2034 2274 1.069227 GTTGCCAAGCCAAACGACTAG 60.069 52.381 0.00 0.00 0.00 2.57
2050 2290 6.127730 ACCAGCTAGTATAAAATGTTGGTTGC 60.128 38.462 0.00 0.00 38.71 4.17
2073 2313 6.127730 CCAAACAGACCTGGAAAATGTATACC 60.128 42.308 0.00 0.00 34.35 2.73
2074 2314 6.433093 ACCAAACAGACCTGGAAAATGTATAC 59.567 38.462 0.00 0.00 36.49 1.47
2115 2383 5.661056 ATGACCACGTTCAGAGAATAAGA 57.339 39.130 0.00 0.00 0.00 2.10
2119 2387 7.556844 ACTTATAATGACCACGTTCAGAGAAT 58.443 34.615 0.00 0.00 0.00 2.40
2158 2426 1.967319 TGGAACAAGTCAAGAGTGGC 58.033 50.000 0.00 0.00 31.92 5.01
2256 2524 1.158484 CGCATGGCTCCTGATCTGTG 61.158 60.000 0.00 0.00 0.00 3.66
2296 2564 3.305608 GCTCACCTGTTCCATTCTTTTGG 60.306 47.826 0.00 0.00 38.18 3.28
2371 2639 4.217550 TGATTACCCTTTTTCGAGGCTTTG 59.782 41.667 0.00 0.00 35.37 2.77
2398 2666 4.406972 CAGGTTAGTCAGATGAGGGATGAA 59.593 45.833 0.00 0.00 0.00 2.57
2483 2755 1.334869 GAGGTTGTTGTGGCAAGTCAG 59.665 52.381 0.00 0.00 0.00 3.51
2509 2781 0.745845 GCACATCCTTGCTCCACGAT 60.746 55.000 0.00 0.00 39.59 3.73
2704 2980 2.096819 TGTCGGTTCAACAAGAGCAAAC 59.903 45.455 0.00 0.00 0.00 2.93
2714 2990 2.093783 CGCCTAAATCTGTCGGTTCAAC 59.906 50.000 0.00 0.00 0.00 3.18
2846 3122 1.283029 ACCATGCAGTGCTGGAAGTAT 59.717 47.619 29.06 11.99 36.35 2.12
3040 3316 9.770097 TTTAACAAATGGAATAGAATTTGCACA 57.230 25.926 7.78 0.00 44.15 4.57
3052 3328 4.592778 ACCAGGCACTTTAACAAATGGAAT 59.407 37.500 0.00 0.00 34.60 3.01
3058 3334 4.261825 GCACATACCAGGCACTTTAACAAA 60.262 41.667 0.00 0.00 34.60 2.83
3071 3347 4.160065 TGGAATGGAATTTGCACATACCAG 59.840 41.667 0.00 0.00 36.07 4.00
3088 3418 4.215613 CACATCTGCCAGATATGTGGAATG 59.784 45.833 22.62 20.56 44.28 2.67
3178 3508 2.997980 ACACACTGATTGACACCACAA 58.002 42.857 0.00 0.00 0.00 3.33
3207 3537 4.821805 CAGAAGGCTCCAACAGAGTTAAAA 59.178 41.667 0.00 0.00 45.21 1.52
3270 3600 5.419788 AGACATCAAGAGCATTATGGCAAAA 59.580 36.000 0.00 0.00 35.83 2.44
3277 3607 4.164796 TCACCCAGACATCAAGAGCATTAT 59.835 41.667 0.00 0.00 0.00 1.28
3297 3627 8.500753 TTGTAACAGGGTACATCATTTATCAC 57.499 34.615 0.00 0.00 34.05 3.06
3385 3716 5.782047 TGATAGACCAAAAAGGCAAACATG 58.218 37.500 0.00 0.00 43.14 3.21
3386 3717 5.539955 ACTGATAGACCAAAAAGGCAAACAT 59.460 36.000 0.00 0.00 43.14 2.71
3392 3723 3.444034 GGGAACTGATAGACCAAAAAGGC 59.556 47.826 0.00 0.00 43.14 4.35
3403 3734 5.923733 ACTGTTAGACTGGGAACTGATAG 57.076 43.478 0.00 0.00 0.00 2.08
3420 3751 8.288689 ACCAGAATAAGTACAAAACAACTGTT 57.711 30.769 0.00 0.00 40.50 3.16
3629 3961 0.323999 TGGCCTTCATGCTTGCAGAT 60.324 50.000 3.32 0.00 0.00 2.90
3748 4084 0.613777 AGAATCCACCTGTCCGGAAC 59.386 55.000 5.23 0.59 34.22 3.62
3842 4178 7.468441 CATTTGCGGTGAACATATAAGTAACA 58.532 34.615 0.00 0.00 0.00 2.41
3860 4196 2.838386 AGTAAGCATCTGCATTTGCG 57.162 45.000 13.46 0.00 45.83 4.85
3896 4232 6.231211 ACTCCCTGACAGTACATTTTAACTG 58.769 40.000 0.93 1.10 46.84 3.16
3900 4236 4.619863 GCGACTCCCTGACAGTACATTTTA 60.620 45.833 0.93 0.00 0.00 1.52
3901 4237 3.864921 GCGACTCCCTGACAGTACATTTT 60.865 47.826 0.93 0.00 0.00 1.82
3979 4315 8.157476 AGATTTTTCATCAGTTGTAGTACCTGT 58.843 33.333 0.00 0.00 0.00 4.00
4094 4436 6.049149 AGGTAGACAAATATGTTGGATCACG 58.951 40.000 0.00 0.00 40.74 4.35
4151 4493 4.683832 ACAATACCGCAAGCTACTTCTAG 58.316 43.478 0.00 0.00 0.00 2.43
4152 4494 4.679662 GACAATACCGCAAGCTACTTCTA 58.320 43.478 0.00 0.00 0.00 2.10
4167 4509 6.128902 ACAATTCGAGAACTGTTCGACAATAC 60.129 38.462 14.35 2.21 45.70 1.89
4378 4722 3.486708 GCACCGATTCGATTATTGTGCAA 60.487 43.478 22.36 0.00 35.64 4.08
4524 4951 4.701651 TCCAAGAAAGATGAATCGCAACAT 59.298 37.500 0.00 0.00 0.00 2.71
4531 4958 6.096564 AGCTGGATTTCCAAGAAAGATGAATC 59.903 38.462 0.18 0.00 46.97 2.52
4621 5048 2.472695 ACGATCTTGTGCTTGGCTTA 57.527 45.000 0.00 0.00 0.00 3.09
4628 5055 3.738281 CGGATTTCCTACGATCTTGTGCT 60.738 47.826 0.00 0.00 0.00 4.40
4633 5060 1.692519 CCCCGGATTTCCTACGATCTT 59.307 52.381 0.73 0.00 0.00 2.40
4637 5064 0.032813 AGACCCCGGATTTCCTACGA 60.033 55.000 0.73 0.00 0.00 3.43
4645 5072 1.777941 GTCTGAGTAGACCCCGGATT 58.222 55.000 0.73 0.00 46.14 3.01
4672 5101 8.153550 GGTGACTAGAGATTACATGAATGGAAT 58.846 37.037 0.00 0.16 43.81 3.01
4724 5153 0.525242 GCGAAATTAGCAATGCCGCA 60.525 50.000 16.73 0.00 40.15 5.69
4725 5154 0.248621 AGCGAAATTAGCAATGCCGC 60.249 50.000 14.52 14.52 40.48 6.53
4828 5266 2.930887 GCACCTCTGACAACAAGCGATA 60.931 50.000 0.00 0.00 0.00 2.92
4858 5296 1.540435 TAGGCACGTGGTGATGCAGA 61.540 55.000 18.88 0.00 43.93 4.26
4902 5340 4.217550 TCCAACATCTAAAAGCCCGAAAAG 59.782 41.667 0.00 0.00 0.00 2.27
4922 5360 9.605275 CTCATCAACAGATAGATAAAAGTTCCA 57.395 33.333 0.00 0.00 0.00 3.53
4942 5380 1.179152 CATGCCACAAAGCCTCATCA 58.821 50.000 0.00 0.00 0.00 3.07
5022 5460 2.434359 CGGTCTTCCTTCGTGGGC 60.434 66.667 0.00 0.00 36.20 5.36
5042 5480 6.972328 GCTCAAAACAAAGAATTACACACAGA 59.028 34.615 0.00 0.00 0.00 3.41
5043 5481 6.974622 AGCTCAAAACAAAGAATTACACACAG 59.025 34.615 0.00 0.00 0.00 3.66
5063 5501 5.592282 TGGACTTACAAACAAAATCAGCTCA 59.408 36.000 0.00 0.00 0.00 4.26
5073 5511 8.664798 CGATGAAGATAATGGACTTACAAACAA 58.335 33.333 0.00 0.00 0.00 2.83
5074 5512 7.822334 ACGATGAAGATAATGGACTTACAAACA 59.178 33.333 0.00 0.00 0.00 2.83
5075 5513 8.197988 ACGATGAAGATAATGGACTTACAAAC 57.802 34.615 0.00 0.00 0.00 2.93
5086 5556 8.404889 GTCCTCATATGACGATGAAGATAATG 57.595 38.462 0.00 0.00 35.44 1.90
5104 5574 3.711704 ACATAGTCCAAATCCGTCCTCAT 59.288 43.478 0.00 0.00 0.00 2.90
5105 5575 3.104512 ACATAGTCCAAATCCGTCCTCA 58.895 45.455 0.00 0.00 0.00 3.86
5176 5669 6.408039 CGACTTGATTATCATTTTTCGTTCGG 59.592 38.462 0.00 0.00 0.00 4.30
5201 5694 4.260948 GGCAAATGCTAGTAGCTGATTGAC 60.261 45.833 25.64 22.30 42.97 3.18
5213 5706 3.308438 AGCAACTTTGGCAAATGCTAG 57.692 42.857 29.78 15.02 44.92 3.42
5216 5709 2.989641 CAAAGCAACTTTGGCAAATGC 58.010 42.857 24.10 24.10 44.75 3.56
5245 5740 2.944129 TCAAGTCCAGTTCTTTTGGGG 58.056 47.619 0.00 0.00 36.34 4.96
5253 5748 3.604582 AGCAGCTAATCAAGTCCAGTTC 58.395 45.455 0.00 0.00 0.00 3.01
5256 5751 3.603532 TGAAGCAGCTAATCAAGTCCAG 58.396 45.455 0.00 0.00 0.00 3.86
5272 5767 7.222611 TGTTAGCATTTTGTTCTTTTCTGAAGC 59.777 33.333 0.00 0.00 0.00 3.86
5307 5802 5.488919 TCCATCCTTTGACTCCACTCTAAAT 59.511 40.000 0.00 0.00 0.00 1.40
5314 5845 2.834549 TCTCTCCATCCTTTGACTCCAC 59.165 50.000 0.00 0.00 0.00 4.02
5328 5859 0.469331 ACGACCACCACTTCTCTCCA 60.469 55.000 0.00 0.00 0.00 3.86
5412 5946 1.306739 GCCACTGGGGTAGGTAGGT 60.307 63.158 0.00 0.00 39.65 3.08
5501 6059 1.838077 CAAGGGATTTAGAGTCCGGGT 59.162 52.381 0.00 0.00 36.58 5.28
5507 6065 3.709141 GAGAGGAGCAAGGGATTTAGAGT 59.291 47.826 0.00 0.00 0.00 3.24
5519 6077 1.125093 TTTCCGGTGGAGAGGAGCAA 61.125 55.000 0.00 0.00 37.88 3.91
5521 6079 1.079057 GTTTCCGGTGGAGAGGAGC 60.079 63.158 0.00 0.00 37.88 4.70
5522 6080 0.905337 AGGTTTCCGGTGGAGAGGAG 60.905 60.000 0.00 0.00 37.88 3.69
5523 6081 0.473117 AAGGTTTCCGGTGGAGAGGA 60.473 55.000 0.00 0.00 31.21 3.71
5524 6082 0.321653 CAAGGTTTCCGGTGGAGAGG 60.322 60.000 0.00 0.00 31.21 3.69
5526 6084 0.395312 GTCAAGGTTTCCGGTGGAGA 59.605 55.000 0.00 0.00 31.21 3.71
5527 6085 0.605589 GGTCAAGGTTTCCGGTGGAG 60.606 60.000 0.00 0.00 31.21 3.86
5528 6086 1.452801 GGTCAAGGTTTCCGGTGGA 59.547 57.895 0.00 0.00 0.00 4.02
5534 6092 3.053896 CGGCCGGTCAAGGTTTCC 61.054 66.667 20.10 0.00 0.00 3.13
5536 6094 2.032071 CTCGGCCGGTCAAGGTTT 59.968 61.111 27.83 0.00 0.00 3.27
5537 6095 4.016706 CCTCGGCCGGTCAAGGTT 62.017 66.667 27.83 0.00 0.00 3.50
5540 6098 4.148825 CCTCCTCGGCCGGTCAAG 62.149 72.222 27.83 15.39 0.00 3.02
5587 6145 3.067461 ACGATCAATCTAGCAGACCAGAC 59.933 47.826 0.00 0.00 0.00 3.51
5609 6167 3.374988 GCGTCATCAATGGAGTGAATGAA 59.625 43.478 0.00 0.00 0.00 2.57
5728 6290 1.538419 GCTAATAGCTGGACGGTGGAC 60.538 57.143 4.79 0.00 38.45 4.02
5729 6291 0.750850 GCTAATAGCTGGACGGTGGA 59.249 55.000 4.79 0.00 38.45 4.02
5744 6306 0.537188 CCTCGAAGGAGCTTGGCTAA 59.463 55.000 0.00 0.00 39.88 3.09
5745 6307 1.961180 GCCTCGAAGGAGCTTGGCTA 61.961 60.000 5.24 0.00 39.88 3.93
5746 6308 2.985456 CCTCGAAGGAGCTTGGCT 59.015 61.111 0.00 0.00 43.88 4.75
5747 6309 2.821810 GCCTCGAAGGAGCTTGGC 60.822 66.667 5.24 0.00 37.67 4.52
5748 6310 2.124942 GGCCTCGAAGGAGCTTGG 60.125 66.667 0.00 0.00 37.67 3.61
5750 6312 3.775654 CCGGCCTCGAAGGAGCTT 61.776 66.667 0.00 0.00 37.67 3.74
5917 6479 4.081406 GGGCATCATTTATCATGGCAGTA 58.919 43.478 7.65 0.00 45.21 2.74
5920 6482 2.894765 CAGGGCATCATTTATCATGGCA 59.105 45.455 7.65 0.00 45.21 4.92
5924 6486 3.840991 ACAGCAGGGCATCATTTATCAT 58.159 40.909 0.00 0.00 0.00 2.45
5927 6489 4.796606 AGTAACAGCAGGGCATCATTTAT 58.203 39.130 0.00 0.00 0.00 1.40
5930 6492 2.025981 TGAGTAACAGCAGGGCATCATT 60.026 45.455 0.00 0.00 0.00 2.57
5951 6519 7.882179 ACTGTAATTTTTCTTGCGGAATAACT 58.118 30.769 0.00 0.00 33.53 2.24
5971 6541 5.359860 TGCTCAGCTGCTAATTAGTACTGTA 59.640 40.000 20.95 13.11 0.00 2.74
5972 6542 4.160439 TGCTCAGCTGCTAATTAGTACTGT 59.840 41.667 20.95 0.00 0.00 3.55
5973 6543 4.686972 TGCTCAGCTGCTAATTAGTACTG 58.313 43.478 9.47 16.62 0.00 2.74
5974 6544 5.163364 ACATGCTCAGCTGCTAATTAGTACT 60.163 40.000 9.47 0.00 0.00 2.73
5975 6545 5.053145 ACATGCTCAGCTGCTAATTAGTAC 58.947 41.667 9.47 5.02 0.00 2.73
5989 6559 3.303593 GGCGATCATTTGTACATGCTCAG 60.304 47.826 0.00 0.00 0.00 3.35
6009 6582 9.425577 GAGTACTCATACCTATAAAGAAATGGC 57.574 37.037 18.20 0.00 30.88 4.40
6036 6609 9.401058 GGTAGCGGACTTTAGATACCTATAATA 57.599 37.037 3.03 0.00 43.73 0.98
6037 6610 7.892241 TGGTAGCGGACTTTAGATACCTATAAT 59.108 37.037 10.58 0.00 46.30 1.28
6038 6611 7.233632 TGGTAGCGGACTTTAGATACCTATAA 58.766 38.462 10.58 0.00 46.30 0.98
6039 6612 6.782986 TGGTAGCGGACTTTAGATACCTATA 58.217 40.000 10.58 0.00 46.30 1.31
6040 6613 5.638133 TGGTAGCGGACTTTAGATACCTAT 58.362 41.667 10.58 0.00 46.30 2.57
6041 6614 5.052693 TGGTAGCGGACTTTAGATACCTA 57.947 43.478 10.58 0.00 46.30 3.08
6042 6615 3.907221 TGGTAGCGGACTTTAGATACCT 58.093 45.455 10.58 0.00 46.30 3.08
6043 6616 4.142093 TGTTGGTAGCGGACTTTAGATACC 60.142 45.833 3.27 3.27 46.33 2.73
6044 6617 4.802563 GTGTTGGTAGCGGACTTTAGATAC 59.197 45.833 0.00 0.00 0.00 2.24
6045 6618 4.463539 TGTGTTGGTAGCGGACTTTAGATA 59.536 41.667 0.00 0.00 0.00 1.98
6046 6619 3.259876 TGTGTTGGTAGCGGACTTTAGAT 59.740 43.478 0.00 0.00 0.00 1.98
6051 6624 0.466543 TGTGTGTTGGTAGCGGACTT 59.533 50.000 0.00 0.00 0.00 3.01
6056 6629 1.002900 CCAAACTGTGTGTTGGTAGCG 60.003 52.381 0.00 0.00 39.13 4.26
6058 6631 3.442273 ACAACCAAACTGTGTGTTGGTAG 59.558 43.478 14.03 0.00 40.17 3.18
6064 6637 2.790433 AGTGACAACCAAACTGTGTGT 58.210 42.857 0.00 0.00 0.00 3.72
6075 6648 4.750598 GGAACTGACTTAGAAGTGACAACC 59.249 45.833 0.00 0.00 39.88 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.