AutoCloner

Multiple sequence alignment - TraesCS7D01G014600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G014600	chr7D	100.000	2562	0	0	1	2562	6444405	6446966	0.000000e+00	4732.0
1	TraesCS7D01G014600	chr3A	91.263	1156	45	23	497	1612	534167453	534166314	0.000000e+00	1524.0
2	TraesCS7D01G014600	chr3A	92.105	418	13	6	58	471	534167849	534167448	2.860000e-159	571.0
3	TraesCS7D01G014600	chr3A	81.013	711	79	23	1277	1952	534161697	534161008	4.890000e-142	514.0
4	TraesCS7D01G014600	chr3A	91.489	235	16	3	1666	1897	534166318	534166085	1.140000e-83	320.0
5	TraesCS7D01G014600	chr3A	80.272	294	46	4	1277	1561	533994771	533994481	7.180000e-51	211.0
6	TraesCS7D01G014600	chr3A	97.479	119	3	0	1897	2015	534165843	534165725	1.200000e-48	204.0
7	TraesCS7D01G014600	chr3A	80.392	204	24	11	731	927	533995403	533995209	9.560000e-30	141.0
8	TraesCS7D01G014600	chr3A	78.475	223	24	18	1687	1898	533994409	533994200	9.620000e-25	124.0
9	TraesCS7D01G014600	chr3B	90.575	1061	46	19	736	1783	542748154	542749173	0.000000e+00	1356.0
10	TraesCS7D01G014600	chr3B	95.414	785	31	4	1780	2562	542749387	542750168	0.000000e+00	1245.0
11	TraesCS7D01G014600	chr3B	85.330	743	74	14	1288	2016	542809691	542810412	0.000000e+00	736.0
12	TraesCS7D01G014600	chr3B	96.180	445	12	2	202	641	542747595	542748039	0.000000e+00	723.0
13	TraesCS7D01G014600	chr3B	85.302	381	35	8	524	896	543187735	543188102	8.660000e-100	374.0
14	TraesCS7D01G014600	chr3B	75.207	605	80	42	731	1277	542929316	542929908	3.320000e-54	222.0
15	TraesCS7D01G014600	chr3B	80.894	246	35	2	1277	1513	542929947	542930189	1.570000e-42	183.0
16	TraesCS7D01G014600	chr3B	81.690	213	21	14	1687	1892	543181744	543181945	7.340000e-36	161.0
17	TraesCS7D01G014600	chr3B	90.090	111	8	2	1785	1895	543068272	543068379	9.560000e-30	141.0
18	TraesCS7D01G014600	chr3D	93.103	725	41	8	1780	2499	416484042	416484762	0.000000e+00	1053.0
19	TraesCS7D01G014600	chr3D	83.239	710	56	26	442	1133	416482288	416482952	6.100000e-166	593.0
20	TraesCS7D01G014600	chr3D	81.711	678	80	22	524	1192	416988697	416989339	2.260000e-145	525.0
21	TraesCS7D01G014600	chr3D	81.562	461	56	14	1277	1717	416562592	416563043	1.130000e-93	353.0
22	TraesCS7D01G014600	chr3D	80.312	513	59	19	1277	1777	416989466	416989948	1.460000e-92	350.0
23	TraesCS7D01G014600	chr3D	90.984	244	15	3	1687	1930	416563089	416563325	3.180000e-84	322.0
24	TraesCS7D01G014600	chr3D	79.825	456	42	15	1277	1719	416483614	416484032	1.160000e-73	287.0
25	TraesCS7D01G014600	chr3D	91.000	200	9	5	335	534	416404968	416405158	7.030000e-66	261.0
26	TraesCS7D01G014600	chr3D	81.562	320	14	19	682	993	416426989	416427271	3.320000e-54	222.0
27	TraesCS7D01G014600	chr3D	86.957	184	21	2	993	1176	416934997	416935177	1.200000e-48	204.0
28	TraesCS7D01G014600	chr3D	74.635	548	85	36	988	1513	416915373	416915888	2.600000e-45	193.0
29	TraesCS7D01G014600	chr3D	81.301	246	34	3	1277	1513	416575943	416576185	3.370000e-44	189.0
30	TraesCS7D01G014600	chr3D	91.667	84	6	1	2155	2238	416408990	416409072	5.790000e-22	115.0
31	TraesCS7D01G014600	chr3D	94.286	70	2	1	1826	1895	416936518	416936451	3.490000e-19	106.0
32	TraesCS7D01G014600	chr3D	93.750	64	4	0	1	64	300620587	300620650	2.100000e-16	97.1
33	TraesCS7D01G014600	chr3D	81.513	119	7	6	873	991	416929074	416928971	1.630000e-12	84.2
34	TraesCS7D01G014600	chr3D	100.000	35	0	0	1918	1952	416563345	416563379	5.920000e-07	65.8
35	TraesCS7D01G014600	chr5A	79.241	395	51	17	1285	1660	536971002	536971384	1.970000e-61	246.0
36	TraesCS7D01G014600	chr5A	95.161	62	2	1	1	61	12418781	12418720	2.100000e-16	97.1
37	TraesCS7D01G014600	chr5A	95.161	62	2	1	1	61	695760789	695760728	2.100000e-16	97.1
38	TraesCS7D01G014600	chr5A	79.012	162	14	12	783	927	536970377	536970535	2.710000e-15	93.5
39	TraesCS7D01G014600	chr1D	96.610	59	2	0	1	59	10248744	10248802	5.830000e-17	99.0
40	TraesCS7D01G014600	chr2B	92.647	68	3	2	1	66	455583679	455583612	2.100000e-16	97.1
41	TraesCS7D01G014600	chr2B	93.846	65	3	1	1	65	650489216	650489279	2.100000e-16	97.1
42	TraesCS7D01G014600	chr6B	92.537	67	3	2	1	65	176277018	176277084	7.550000e-16	95.3
43	TraesCS7D01G014600	chr2D	95.082	61	2	1	1	60	646891034	646891094	7.550000e-16	95.3
44	TraesCS7D01G014600	chr5D	92.188	64	3	2	1	64	525599507	525599568	3.510000e-14	89.8
45	TraesCS7D01G014600	chr5B	84.158	101	6	7	834	927	511292204	511292301	3.510000e-14	89.8
46	TraesCS7D01G014600	chr5B	81.081	74	9	4	460	529	38590198	38590270	1.000000e-03	54.7
47	TraesCS7D01G014600	chr1A	100.000	29	0	0	1907	1935	551898692	551898720	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G014600	chr7D	6444405	6446966	2561	False	4732.000000	4732	100.000000	1	2562	1	chr7D.!!$F1	2561
1	TraesCS7D01G014600	chr3A	534165725	534167849	2124	True	654.750000	1524	93.084000	58	2015	4	chr3A.!!$R3	1957
2	TraesCS7D01G014600	chr3A	534161008	534161697	689	True	514.000000	514	81.013000	1277	1952	1	chr3A.!!$R1	675
3	TraesCS7D01G014600	chr3B	542747595	542750168	2573	False	1108.000000	1356	94.056333	202	2562	3	chr3B.!!$F5	2360
4	TraesCS7D01G014600	chr3B	542809691	542810412	721	False	736.000000	736	85.330000	1288	2016	1	chr3B.!!$F1	728
5	TraesCS7D01G014600	chr3B	542929316	542930189	873	False	202.500000	222	78.050500	731	1513	2	chr3B.!!$F6	782
6	TraesCS7D01G014600	chr3D	416482288	416484762	2474	False	644.333333	1053	85.389000	442	2499	3	chr3D.!!$F7	2057
7	TraesCS7D01G014600	chr3D	416988697	416989948	1251	False	437.500000	525	81.011500	524	1777	2	chr3D.!!$F9	1253
8	TraesCS7D01G014600	chr3D	416562592	416563379	787	False	246.933333	353	90.848667	1277	1952	3	chr3D.!!$F8	675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
981	1088	0.177373	GGGGAACTAACCTACGCTGG	59.823	60.0	0.0	0.0	0.0	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2001	3363	3.95168	TCCCTTCTGAAGTTGTTTGGTTC	59.048	43.478	15.72	0.0	0.0	3.62	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	3.349006	GCCGTATGCATCGCCCAG	61.349	66.667	0.19	0.00	40.77	4.45
18	19	2.421314	CCGTATGCATCGCCCAGA	59.579	61.111	0.19	0.00	0.00	3.86
19	20	1.004560	CCGTATGCATCGCCCAGAT	60.005	57.895	0.19	0.00	41.01	2.90
26	27	2.827423	ATCGCCCAGATGCAGAGG	59.173	61.111	0.00	0.00	38.36	3.69
27	28	3.472943	ATCGCCCAGATGCAGAGGC	62.473	63.158	8.59	8.59	42.18	4.70
30	31	4.559063	CCCAGATGCAGAGGCCGG	62.559	72.222	0.00	0.00	40.13	6.13
31	32	4.559063	CCAGATGCAGAGGCCGGG	62.559	72.222	2.18	0.00	40.13	5.73
32	33	4.559063	CAGATGCAGAGGCCGGGG	62.559	72.222	2.18	0.00	40.13	5.73
47	48	2.684104	GGGGCCCTCCTCCTTTTC	59.316	66.667	24.38	0.00	35.33	2.29
48	49	1.931180	GGGGCCCTCCTCCTTTTCT	60.931	63.158	24.38	0.00	35.33	2.52
49	50	1.510431	GGGGCCCTCCTCCTTTTCTT	61.510	60.000	24.38	0.00	35.33	2.52
50	51	1.296002	GGGCCCTCCTCCTTTTCTTA	58.704	55.000	17.04	0.00	0.00	2.10
51	52	1.639108	GGGCCCTCCTCCTTTTCTTAA	59.361	52.381	17.04	0.00	0.00	1.85
52	53	2.042569	GGGCCCTCCTCCTTTTCTTAAA	59.957	50.000	17.04	0.00	0.00	1.52
53	54	3.501568	GGGCCCTCCTCCTTTTCTTAAAA	60.502	47.826	17.04	0.00	0.00	1.52
54	55	4.157246	GGCCCTCCTCCTTTTCTTAAAAA	58.843	43.478	0.00	0.00	33.42	1.94
77	78	5.930837	AAACAATCAAAGGAAGTTCACCA	57.069	34.783	5.01	0.00	0.00	4.17
103	104	9.657419	AGGCCAATATTGAAGTTCAATTTTAAG	57.343	29.630	30.62	22.76	44.03	1.85
120	121	2.781595	AAGTGGCACGGCGGTTCTAG	62.782	60.000	13.24	0.00	0.00	2.43
139	140	2.359900	AGACAAATCCATGGTTCTCGC	58.640	47.619	12.58	0.00	0.00	5.03
145	146	1.153289	CCATGGTTCTCGCCTCCAG	60.153	63.158	2.57	0.00	34.62	3.86
173	174	9.990360	TTCTGCTATATATATTCCGTCAAACAA	57.010	29.630	0.00	0.00	0.00	2.83
174	175	9.990360	TCTGCTATATATATTCCGTCAAACAAA	57.010	29.630	0.00	0.00	0.00	2.83
283	284	3.160269	CCCAAACCAAAGATTCTCAGCT	58.840	45.455	0.00	0.00	0.00	4.24
591	601	2.875317	TCACATGCTTGCTCGTTTACAA	59.125	40.909	0.00	0.00	0.00	2.41
732	790	1.037030	CCTTCTCTCTCTCGCTGCCT	61.037	60.000	0.00	0.00	0.00	4.75
795	858	1.005294	CGTTGTGCTCTGCAATTGCC	61.005	55.000	26.94	12.34	41.47	4.52
822	885	1.618074	GCCCCTTGAGGAAAGAAGCAT	60.618	52.381	0.00	0.00	38.24	3.79
901	983	1.750399	CGGCCACCTTGCTAATGCT	60.750	57.895	2.24	0.00	40.48	3.79
902	984	0.463654	CGGCCACCTTGCTAATGCTA	60.464	55.000	2.24	0.00	40.48	3.49
903	985	1.762708	GGCCACCTTGCTAATGCTAA	58.237	50.000	0.00	0.00	40.48	3.09
904	986	2.310538	GGCCACCTTGCTAATGCTAAT	58.689	47.619	0.00	0.00	40.48	1.73
905	987	2.035066	GGCCACCTTGCTAATGCTAATG	59.965	50.000	0.00	0.00	40.48	1.90
906	988	2.689983	GCCACCTTGCTAATGCTAATGT	59.310	45.455	0.00	0.00	40.48	2.71
934	1035	5.630415	TCTTCTTCTTCCTTCCTGTTGAA	57.370	39.130	0.00	0.00	0.00	2.69
935	1036	6.192970	TCTTCTTCTTCCTTCCTGTTGAAT	57.807	37.500	0.00	0.00	31.06	2.57
936	1037	6.605119	TCTTCTTCTTCCTTCCTGTTGAATT	58.395	36.000	0.00	0.00	31.06	2.17
937	1038	7.745717	TCTTCTTCTTCCTTCCTGTTGAATTA	58.254	34.615	0.00	0.00	31.06	1.40
938	1039	8.217799	TCTTCTTCTTCCTTCCTGTTGAATTAA	58.782	33.333	0.00	0.00	31.06	1.40
939	1040	8.940397	TTCTTCTTCCTTCCTGTTGAATTAAT	57.060	30.769	0.00	0.00	31.06	1.40
981	1088	0.177373	GGGGAACTAACCTACGCTGG	59.823	60.000	0.00	0.00	0.00	4.85
1192	1336	2.097825	CTAACTACCTGCCCGTGTACT	58.902	52.381	0.00	0.00	0.00	2.73
1193	1337	2.220653	AACTACCTGCCCGTGTACTA	57.779	50.000	0.00	0.00	0.00	1.82
1194	1338	1.467920	ACTACCTGCCCGTGTACTAC	58.532	55.000	0.00	0.00	0.00	2.73
1195	1339	0.743097	CTACCTGCCCGTGTACTACC	59.257	60.000	0.00	0.00	0.00	3.18
1196	1340	0.684153	TACCTGCCCGTGTACTACCC	60.684	60.000	0.00	0.00	0.00	3.69
1233	1910	0.381445	CCGATTCATCATGCGCCAAA	59.619	50.000	4.18	0.00	0.00	3.28
1234	1911	1.598676	CCGATTCATCATGCGCCAAAG	60.599	52.381	4.18	0.00	0.00	2.77
1408	2158	3.087031	CACTGTCCTCTTCCATTGCATT	58.913	45.455	0.00	0.00	0.00	3.56
1644	2432	3.243704	GGATCAGCTCATGAGGTACTGAC	60.244	52.174	26.06	19.03	42.53	3.51
1660	2448	3.272581	ACTGACGAGAGCCTAGTTCTAC	58.727	50.000	0.00	0.00	0.00	2.59
1661	2449	3.054948	ACTGACGAGAGCCTAGTTCTACT	60.055	47.826	0.00	0.00	0.00	2.57
1662	2450	3.942748	CTGACGAGAGCCTAGTTCTACTT	59.057	47.826	0.00	0.00	0.00	2.24
1663	2451	3.940221	TGACGAGAGCCTAGTTCTACTTC	59.060	47.826	0.00	0.00	0.00	3.01
1664	2452	4.193865	GACGAGAGCCTAGTTCTACTTCT	58.806	47.826	0.00	0.00	0.00	2.85
1665	2453	5.105023	TGACGAGAGCCTAGTTCTACTTCTA	60.105	44.000	0.00	0.00	0.00	2.10
1719	2579	2.350522	GCTGTGACGATTGATGGAGTT	58.649	47.619	0.00	0.00	0.00	3.01
1778	2639	6.334102	AGTGTTAATATCCAGATCGACTCC	57.666	41.667	0.00	0.00	0.00	3.85
1783	2861	7.175119	TGTTAATATCCAGATCGACTCCAGTAG	59.825	40.741	0.00	0.00	0.00	2.57
2001	3363	5.886992	ACCTTTTAGTTTCACAGTTTTCCG	58.113	37.500	0.00	0.00	0.00	4.30
2150	3512	2.872245	CCCAAATATGTAGGCACGAGTG	59.128	50.000	0.00	0.00	0.00	3.51
2151	3513	3.431626	CCCAAATATGTAGGCACGAGTGA	60.432	47.826	7.50	0.00	0.00	3.41
2152	3514	3.804325	CCAAATATGTAGGCACGAGTGAG	59.196	47.826	7.50	0.00	0.00	3.51
2153	3515	4.433615	CAAATATGTAGGCACGAGTGAGT	58.566	43.478	7.50	0.00	0.00	3.41
2238	3602	6.403527	CCCACCGATGTATACATGCAAATATG	60.404	42.308	22.93	10.40	36.57	1.78
2241	3605	6.714810	ACCGATGTATACATGCAAATATGGTT	59.285	34.615	22.93	0.00	36.57	3.67
2431	3795	3.830178	TCGTGAAGTAGATTGGTTCTCCA	59.170	43.478	0.00	0.00	42.66	3.86
2524	3888	1.816537	GATGCAGTCCTCTGGCGTA	59.183	57.895	0.00	0.00	41.57	4.42

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	2.156542	CATCTGGGCGATGCATACG	58.843	57.895	0.00	6.68	42.75	3.06
9	10	2.827423	CCTCTGCATCTGGGCGAT	59.173	61.111	0.00	0.00	36.28	4.58
10	11	4.166888	GCCTCTGCATCTGGGCGA	62.167	66.667	0.00	0.00	37.47	5.54
13	14	4.559063	CCGGCCTCTGCATCTGGG	62.559	72.222	0.00	0.00	40.13	4.45
14	15	4.559063	CCCGGCCTCTGCATCTGG	62.559	72.222	0.00	0.00	40.13	3.86
15	16	4.559063	CCCCGGCCTCTGCATCTG	62.559	72.222	0.00	0.00	40.13	2.90
29	30	2.947217	AAAAGGAGGAGGGCCCCC	60.947	66.667	21.43	19.98	34.66	5.40
30	31	1.510431	AAGAAAAGGAGGAGGGCCCC	61.510	60.000	21.43	10.33	34.66	5.80
31	32	1.296002	TAAGAAAAGGAGGAGGGCCC	58.704	55.000	16.46	16.46	33.31	5.80
32	33	3.451402	TTTAAGAAAAGGAGGAGGGCC	57.549	47.619	0.00	0.00	0.00	5.80
53	54	6.706295	TGGTGAACTTCCTTTGATTGTTTTT	58.294	32.000	0.00	0.00	0.00	1.94
54	55	6.293004	TGGTGAACTTCCTTTGATTGTTTT	57.707	33.333	0.00	0.00	0.00	2.43
55	56	5.163416	CCTGGTGAACTTCCTTTGATTGTTT	60.163	40.000	0.00	0.00	0.00	2.83
56	57	4.342092	CCTGGTGAACTTCCTTTGATTGTT	59.658	41.667	0.00	0.00	0.00	2.83
57	58	3.891366	CCTGGTGAACTTCCTTTGATTGT	59.109	43.478	0.00	0.00	0.00	2.71
58	59	3.305608	GCCTGGTGAACTTCCTTTGATTG	60.306	47.826	0.00	0.00	0.00	2.67
59	60	2.893489	GCCTGGTGAACTTCCTTTGATT	59.107	45.455	0.00	0.00	0.00	2.57
60	61	2.519013	GCCTGGTGAACTTCCTTTGAT	58.481	47.619	0.00	0.00	0.00	2.57
77	78	9.657419	CTTAAAATTGAACTTCAATATTGGCCT	57.343	29.630	15.86	0.00	45.57	5.19
103	104	2.813908	CTAGAACCGCCGTGCCAC	60.814	66.667	0.00	0.00	0.00	5.01
120	121	1.401905	GGCGAGAACCATGGATTTGTC	59.598	52.381	21.47	10.41	0.00	3.18
139	140	7.470702	CGGAATATATATAGCAGAACCTGGAGG	60.471	44.444	0.00	0.00	42.17	4.30
145	146	8.870879	GTTTGACGGAATATATATAGCAGAACC	58.129	37.037	0.00	0.00	0.00	3.62
173	174	7.145323	CGAGTTAAATTTTGGACCAGTGAATT	58.855	34.615	0.00	0.83	0.00	2.17
174	175	6.677913	CGAGTTAAATTTTGGACCAGTGAAT	58.322	36.000	0.00	0.00	0.00	2.57
283	284	6.540189	GGAGCTCTTCTGTGCAAGAATTTATA	59.460	38.462	14.64	0.00	44.02	0.98
372	377	4.972514	GCTAGCTAGCCAAAATCTTTGT	57.027	40.909	31.67	0.00	43.39	2.83
607	617	0.246086	CACACAGTGAGGAGGAGAGC	59.754	60.000	7.81	0.00	35.23	4.09
732	790	1.228737	GGGGCTGTTTAAGTGGCCA	60.229	57.895	0.00	0.00	46.57	5.36
795	858	4.521062	CCTCAAGGGGCTCGAGCG	62.521	72.222	29.81	16.44	43.26	5.03
822	885	1.210931	CGAGGTTCGTCGCTTGGTA	59.789	57.895	2.22	0.00	34.72	3.25
901	983	7.040409	GGAAGGAAGAAGAAGAAAAGCACATTA	60.040	37.037	0.00	0.00	0.00	1.90
902	984	6.239148	GGAAGGAAGAAGAAGAAAAGCACATT	60.239	38.462	0.00	0.00	0.00	2.71
903	985	5.242615	GGAAGGAAGAAGAAGAAAAGCACAT	59.757	40.000	0.00	0.00	0.00	3.21
904	986	4.580580	GGAAGGAAGAAGAAGAAAAGCACA	59.419	41.667	0.00	0.00	0.00	4.57
905	987	4.824537	AGGAAGGAAGAAGAAGAAAAGCAC	59.175	41.667	0.00	0.00	0.00	4.40
906	988	4.823989	CAGGAAGGAAGAAGAAGAAAAGCA	59.176	41.667	0.00	0.00	0.00	3.91
934	1035	9.725019	TCTCTAATTTCATGTCGCCATATTAAT	57.275	29.630	0.00	0.00	0.00	1.40
935	1036	9.554395	TTCTCTAATTTCATGTCGCCATATTAA	57.446	29.630	0.00	0.00	0.00	1.40
936	1037	9.208022	CTTCTCTAATTTCATGTCGCCATATTA	57.792	33.333	0.00	0.00	0.00	0.98
937	1038	7.173907	CCTTCTCTAATTTCATGTCGCCATATT	59.826	37.037	0.00	0.00	0.00	1.28
938	1039	6.652481	CCTTCTCTAATTTCATGTCGCCATAT	59.348	38.462	0.00	0.00	0.00	1.78
939	1040	5.991606	CCTTCTCTAATTTCATGTCGCCATA	59.008	40.000	0.00	0.00	0.00	2.74
1192	1336	1.473258	GCAATGTCAAGCATGGGGTA	58.527	50.000	0.00	0.00	37.96	3.69
1193	1337	1.597797	CGCAATGTCAAGCATGGGGT	61.598	55.000	0.00	0.00	36.88	4.95
1194	1338	1.140161	CGCAATGTCAAGCATGGGG	59.860	57.895	0.00	0.00	37.96	4.96
1195	1339	0.179156	GTCGCAATGTCAAGCATGGG	60.179	55.000	0.00	0.00	37.96	4.00
1196	1340	0.179156	GGTCGCAATGTCAAGCATGG	60.179	55.000	0.00	0.00	37.96	3.66
1233	1910	2.840038	TGCAGAGGACACCATATCAACT	59.160	45.455	0.00	0.00	0.00	3.16
1234	1911	3.201290	CTGCAGAGGACACCATATCAAC	58.799	50.000	8.42	0.00	0.00	3.18
1364	2105	2.835705	CGAGCGCGAGGTAGGTGAT	61.836	63.158	12.10	0.00	45.11	3.06
1408	2158	1.219664	CCGGAAGTGGATGGCGTAA	59.780	57.895	0.00	0.00	0.00	3.18
1644	2432	4.753107	CCTAGAAGTAGAACTAGGCTCTCG	59.247	50.000	0.00	0.00	45.68	4.04
1675	2463	8.260818	AGCGGAATTAATGCATGTATACTCTAT	58.739	33.333	0.00	0.00	0.00	1.98
1684	2472	3.016031	TCACAGCGGAATTAATGCATGT	58.984	40.909	0.00	0.00	0.00	3.21
1719	2579	1.732941	AGATTCGCAAATACGGCACA	58.267	45.000	0.00	0.00	0.00	4.57
1778	2639	2.950433	CAAAGCATTGCCCAACTACTG	58.050	47.619	4.70	0.00	0.00	2.74
2001	3363	3.951680	TCCCTTCTGAAGTTGTTTGGTTC	59.048	43.478	15.72	0.00	0.00	3.62
2150	3512	5.179555	GGGAATTACACTTGTCAGTTGACTC	59.820	44.000	12.97	0.04	44.99	3.36
2151	3513	5.063880	GGGAATTACACTTGTCAGTTGACT	58.936	41.667	12.97	0.00	44.99	3.41
2152	3514	4.819630	TGGGAATTACACTTGTCAGTTGAC	59.180	41.667	5.33	5.33	44.97	3.18
2153	3515	4.819630	GTGGGAATTACACTTGTCAGTTGA	59.180	41.667	5.70	0.00	35.98	3.18
2191	3555	5.663106	GGGGTCATCCATCAATAGCTCTATA	59.337	44.000	0.00	0.00	37.22	1.31

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.