Multiple sequence alignment - TraesCS7D01G014200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G014200 chr7D 100.000 4142 0 0 1 4142 6379753 6375612 0.000000e+00 7649.0
1 TraesCS7D01G014200 chr7D 97.059 850 25 0 3293 4142 28792647 28793496 0.000000e+00 1432.0
2 TraesCS7D01G014200 chr7D 81.793 368 44 15 1625 1978 634370005 634369647 1.880000e-73 287.0
3 TraesCS7D01G014200 chr3D 90.411 3066 137 78 280 3284 415684292 415681323 0.000000e+00 3888.0
4 TraesCS7D01G014200 chr3D 97.439 859 22 0 3284 4142 568230501 568229643 0.000000e+00 1465.0
5 TraesCS7D01G014200 chr3D 96.853 858 27 0 3285 4142 32185712 32186569 0.000000e+00 1435.0
6 TraesCS7D01G014200 chr3D 96.270 858 32 0 3285 4142 564945025 564944168 0.000000e+00 1408.0
7 TraesCS7D01G014200 chr3D 95.385 195 9 0 994 1188 415688948 415688754 1.120000e-80 311.0
8 TraesCS7D01G014200 chr3D 78.652 178 13 11 722 880 415689321 415689150 1.230000e-15 95.3
9 TraesCS7D01G014200 chr3A 86.985 2720 180 82 567 3190 534467016 534469657 0.000000e+00 2902.0
10 TraesCS7D01G014200 chr3A 90.987 233 9 3 994 1220 534449048 534449274 1.870000e-78 303.0
11 TraesCS7D01G014200 chr3A 86.184 152 12 5 431 575 534452028 534452177 5.540000e-34 156.0
12 TraesCS7D01G014200 chr3A 77.665 197 30 10 177 368 534451805 534451992 1.570000e-19 108.0
13 TraesCS7D01G014200 chr3A 90.000 60 5 1 821 880 534448807 534448865 4.440000e-10 76.8
14 TraesCS7D01G014200 chr3B 92.003 1338 56 19 556 1877 542513306 542512004 0.000000e+00 1831.0
15 TraesCS7D01G014200 chr3B 90.411 1241 79 23 2048 3282 542511765 542510559 0.000000e+00 1596.0
16 TraesCS7D01G014200 chr3B 92.547 161 6 3 1895 2055 542511953 542511799 4.170000e-55 226.0
17 TraesCS7D01G014200 chr3B 86.957 69 5 2 486 553 542513456 542513521 1.600000e-09 75.0
18 TraesCS7D01G014200 chr3B 93.333 45 2 1 325 368 542513932 542513888 9.610000e-07 65.8
19 TraesCS7D01G014200 chr1D 97.424 854 22 0 3289 4142 22880449 22879596 0.000000e+00 1456.0
20 TraesCS7D01G014200 chr1D 87.500 88 7 3 177 263 9800626 9800542 9.480000e-17 99.0
21 TraesCS7D01G014200 chr2D 96.759 864 28 0 3279 4142 424834107 424834970 0.000000e+00 1441.0
22 TraesCS7D01G014200 chr5D 96.737 858 28 0 3285 4142 1546324 1547181 0.000000e+00 1430.0
23 TraesCS7D01G014200 chr5D 96.604 854 29 0 3289 4142 11216568 11215715 0.000000e+00 1417.0
24 TraesCS7D01G014200 chr6D 96.387 858 26 2 3285 4142 12448259 12447407 0.000000e+00 1408.0
25 TraesCS7D01G014200 chr6D 79.828 466 65 18 2311 2756 99802253 99801797 3.110000e-81 313.0
26 TraesCS7D01G014200 chr6D 89.175 194 20 1 1026 1219 100388112 100387920 1.490000e-59 241.0
27 TraesCS7D01G014200 chr6D 81.065 169 25 7 1322 1487 462635747 462635583 1.210000e-25 128.0
28 TraesCS7D01G014200 chr4D 80.108 558 101 10 1315 1867 44422856 44423408 1.390000e-109 407.0
29 TraesCS7D01G014200 chr4D 93.305 239 16 0 1625 1863 299136749 299136987 1.830000e-93 353.0
30 TraesCS7D01G014200 chr4D 86.598 97 5 4 1881 1977 299137086 299137174 2.630000e-17 100.0
31 TraesCS7D01G014200 chr6A 85.791 373 47 2 1511 1877 119767223 119766851 1.400000e-104 390.0
32 TraesCS7D01G014200 chr6A 87.054 224 20 7 1001 1221 119767517 119767300 1.150000e-60 244.0
33 TraesCS7D01G014200 chr6A 86.188 181 24 1 1 180 547631554 547631374 1.170000e-45 195.0
34 TraesCS7D01G014200 chr4A 76.854 553 120 8 1315 1863 555517637 555517089 5.200000e-79 305.0
35 TraesCS7D01G014200 chr7B 89.302 215 23 0 1625 1839 599099164 599099378 1.900000e-68 270.0
36 TraesCS7D01G014200 chr7B 85.227 88 10 2 177 262 2079555 2079641 2.050000e-13 87.9
37 TraesCS7D01G014200 chr6B 84.231 260 41 0 1565 1824 184171964 184171705 1.910000e-63 254.0
38 TraesCS7D01G014200 chr6B 76.966 356 58 16 2418 2756 184167098 184166750 9.150000e-42 182.0
39 TraesCS7D01G014200 chr2B 86.207 232 31 1 994 1224 140773869 140773638 2.470000e-62 250.0
40 TraesCS7D01G014200 chr2B 89.855 69 4 3 177 244 226520396 226520330 7.380000e-13 86.1
41 TraesCS7D01G014200 chr7A 83.691 233 35 3 994 1224 696649444 696649213 2.510000e-52 217.0
42 TraesCS7D01G014200 chr7A 100.000 32 0 0 113 144 19930223 19930254 4.470000e-05 60.2
43 TraesCS7D01G014200 chr7A 94.444 36 1 1 189 224 650940046 650940080 2.000000e-03 54.7
44 TraesCS7D01G014200 chr5A 91.667 84 5 2 180 262 314147456 314147374 9.410000e-22 115.0
45 TraesCS7D01G014200 chr2A 85.057 87 5 6 177 262 433369159 433369238 9.540000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G014200 chr7D 6375612 6379753 4141 True 7649.00 7649 100.0000 1 4142 1 chr7D.!!$R1 4141
1 TraesCS7D01G014200 chr7D 28792647 28793496 849 False 1432.00 1432 97.0590 3293 4142 1 chr7D.!!$F1 849
2 TraesCS7D01G014200 chr3D 415681323 415684292 2969 True 3888.00 3888 90.4110 280 3284 1 chr3D.!!$R1 3004
3 TraesCS7D01G014200 chr3D 568229643 568230501 858 True 1465.00 1465 97.4390 3284 4142 1 chr3D.!!$R3 858
4 TraesCS7D01G014200 chr3D 32185712 32186569 857 False 1435.00 1435 96.8530 3285 4142 1 chr3D.!!$F1 857
5 TraesCS7D01G014200 chr3D 564944168 564945025 857 True 1408.00 1408 96.2700 3285 4142 1 chr3D.!!$R2 857
6 TraesCS7D01G014200 chr3D 415688754 415689321 567 True 203.15 311 87.0185 722 1188 2 chr3D.!!$R4 466
7 TraesCS7D01G014200 chr3A 534467016 534469657 2641 False 2902.00 2902 86.9850 567 3190 1 chr3A.!!$F1 2623
8 TraesCS7D01G014200 chr3B 542510559 542513932 3373 True 929.70 1831 92.0735 325 3282 4 chr3B.!!$R1 2957
9 TraesCS7D01G014200 chr1D 22879596 22880449 853 True 1456.00 1456 97.4240 3289 4142 1 chr1D.!!$R2 853
10 TraesCS7D01G014200 chr2D 424834107 424834970 863 False 1441.00 1441 96.7590 3279 4142 1 chr2D.!!$F1 863
11 TraesCS7D01G014200 chr5D 1546324 1547181 857 False 1430.00 1430 96.7370 3285 4142 1 chr5D.!!$F1 857
12 TraesCS7D01G014200 chr5D 11215715 11216568 853 True 1417.00 1417 96.6040 3289 4142 1 chr5D.!!$R1 853
13 TraesCS7D01G014200 chr6D 12447407 12448259 852 True 1408.00 1408 96.3870 3285 4142 1 chr6D.!!$R1 857
14 TraesCS7D01G014200 chr4D 44422856 44423408 552 False 407.00 407 80.1080 1315 1867 1 chr4D.!!$F1 552
15 TraesCS7D01G014200 chr6A 119766851 119767517 666 True 317.00 390 86.4225 1001 1877 2 chr6A.!!$R2 876
16 TraesCS7D01G014200 chr4A 555517089 555517637 548 True 305.00 305 76.8540 1315 1863 1 chr4A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.106708 ACGTGCAAGTGACTGGACAT 59.893 50.0 3.91 0.00 37.50 3.06 F
81 82 0.107897 TTGTGGCTACGCGGATGATT 60.108 50.0 12.47 0.00 0.00 2.57 F
383 901 0.110192 GCACCGTTTACAGCTGAAGC 60.110 55.0 23.35 11.22 42.49 3.86 F
477 995 0.460311 GTACTGCTGTGGATAGGCGT 59.540 55.0 6.48 0.00 0.00 5.68 F
1061 1713 0.896940 AAGACCTTGCCGGACGAGTA 60.897 55.0 5.05 0.00 36.31 2.59 F
2193 3001 0.037790 AGTTGCTCTGCTCCGTTCTC 60.038 55.0 0.00 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 2581 0.232303 CGTCGGTGAAGAAACACAGC 59.768 55.0 0.00 0.0 41.88 4.40 R
1885 2592 0.388520 CAAGTGCTGATCGTCGGTGA 60.389 55.0 0.00 0.0 0.00 4.02 R
1886 2593 0.667487 ACAAGTGCTGATCGTCGGTG 60.667 55.0 0.00 0.0 0.00 4.94 R
1888 2595 0.667487 ACACAAGTGCTGATCGTCGG 60.667 55.0 0.00 0.0 0.00 4.79 R
2727 3542 0.320771 TGAGCTTGAAGCCGAAGACC 60.321 55.0 14.45 0.0 43.77 3.85 R
3164 3990 0.039256 ATTTGTGTGATGTGTGCGCC 60.039 50.0 4.18 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.467557 CTCTTTCTTCATCTCTAGCAATCAC 57.532 40.000 0.00 0.00 0.00 3.06
25 26 6.038985 TCTTTCTTCATCTCTAGCAATCACG 58.961 40.000 0.00 0.00 0.00 4.35
26 27 4.991153 TCTTCATCTCTAGCAATCACGT 57.009 40.909 0.00 0.00 0.00 4.49
27 28 4.676546 TCTTCATCTCTAGCAATCACGTG 58.323 43.478 9.94 9.94 0.00 4.49
28 29 2.814269 TCATCTCTAGCAATCACGTGC 58.186 47.619 11.67 0.00 45.28 5.34
38 39 4.436515 TCACGTGCAAGTGACTGG 57.563 55.556 28.20 6.07 45.18 4.00
39 40 1.819905 TCACGTGCAAGTGACTGGA 59.180 52.632 28.20 9.03 45.18 3.86
40 41 0.529773 TCACGTGCAAGTGACTGGAC 60.530 55.000 28.20 0.00 45.18 4.02
41 42 0.809636 CACGTGCAAGTGACTGGACA 60.810 55.000 26.06 0.00 44.43 4.02
42 43 0.106708 ACGTGCAAGTGACTGGACAT 59.893 50.000 3.91 0.00 37.50 3.06
43 44 0.514255 CGTGCAAGTGACTGGACATG 59.486 55.000 0.00 0.00 37.50 3.21
44 45 1.597742 GTGCAAGTGACTGGACATGT 58.402 50.000 0.00 0.00 37.57 3.21
45 46 1.265095 GTGCAAGTGACTGGACATGTG 59.735 52.381 1.15 0.00 37.57 3.21
46 47 1.140652 TGCAAGTGACTGGACATGTGA 59.859 47.619 1.15 0.00 0.00 3.58
47 48 1.802960 GCAAGTGACTGGACATGTGAG 59.197 52.381 1.15 0.88 0.00 3.51
48 49 2.548707 GCAAGTGACTGGACATGTGAGA 60.549 50.000 1.15 0.00 0.00 3.27
49 50 3.732212 CAAGTGACTGGACATGTGAGAA 58.268 45.455 1.15 0.00 0.00 2.87
50 51 4.129380 CAAGTGACTGGACATGTGAGAAA 58.871 43.478 1.15 0.00 0.00 2.52
51 52 4.000331 AGTGACTGGACATGTGAGAAAG 58.000 45.455 1.15 0.00 0.00 2.62
52 53 3.643320 AGTGACTGGACATGTGAGAAAGA 59.357 43.478 1.15 0.00 0.00 2.52
53 54 4.101585 AGTGACTGGACATGTGAGAAAGAA 59.898 41.667 1.15 0.00 0.00 2.52
54 55 4.816385 GTGACTGGACATGTGAGAAAGAAA 59.184 41.667 1.15 0.00 0.00 2.52
55 56 5.296780 GTGACTGGACATGTGAGAAAGAAAA 59.703 40.000 1.15 0.00 0.00 2.29
56 57 5.296780 TGACTGGACATGTGAGAAAGAAAAC 59.703 40.000 1.15 0.00 0.00 2.43
57 58 5.192927 ACTGGACATGTGAGAAAGAAAACA 58.807 37.500 1.15 0.00 0.00 2.83
58 59 5.652014 ACTGGACATGTGAGAAAGAAAACAA 59.348 36.000 1.15 0.00 0.00 2.83
59 60 6.135290 TGGACATGTGAGAAAGAAAACAAG 57.865 37.500 1.15 0.00 0.00 3.16
60 61 5.067674 TGGACATGTGAGAAAGAAAACAAGG 59.932 40.000 1.15 0.00 0.00 3.61
61 62 5.299279 GGACATGTGAGAAAGAAAACAAGGA 59.701 40.000 1.15 0.00 0.00 3.36
62 63 6.015940 GGACATGTGAGAAAGAAAACAAGGAT 60.016 38.462 1.15 0.00 0.00 3.24
63 64 7.352079 ACATGTGAGAAAGAAAACAAGGATT 57.648 32.000 0.00 0.00 0.00 3.01
74 75 1.715585 CAAGGATTGTGGCTACGCG 59.284 57.895 3.53 3.53 42.34 6.01
75 76 1.449601 AAGGATTGTGGCTACGCGG 60.450 57.895 12.47 0.00 0.00 6.46
76 77 1.895020 AAGGATTGTGGCTACGCGGA 61.895 55.000 12.47 0.00 0.00 5.54
77 78 1.227556 GGATTGTGGCTACGCGGAT 60.228 57.895 12.47 0.00 0.00 4.18
78 79 1.498865 GGATTGTGGCTACGCGGATG 61.499 60.000 12.47 0.21 0.00 3.51
79 80 0.529773 GATTGTGGCTACGCGGATGA 60.530 55.000 12.47 0.00 0.00 2.92
80 81 0.106708 ATTGTGGCTACGCGGATGAT 59.893 50.000 12.47 0.00 0.00 2.45
81 82 0.107897 TTGTGGCTACGCGGATGATT 60.108 50.000 12.47 0.00 0.00 2.57
82 83 0.747852 TGTGGCTACGCGGATGATTA 59.252 50.000 12.47 0.00 0.00 1.75
83 84 1.137282 TGTGGCTACGCGGATGATTAA 59.863 47.619 12.47 0.00 0.00 1.40
84 85 2.206750 GTGGCTACGCGGATGATTAAA 58.793 47.619 12.47 0.00 0.00 1.52
85 86 2.806244 GTGGCTACGCGGATGATTAAAT 59.194 45.455 12.47 0.00 0.00 1.40
86 87 3.991773 GTGGCTACGCGGATGATTAAATA 59.008 43.478 12.47 0.00 0.00 1.40
87 88 4.091509 GTGGCTACGCGGATGATTAAATAG 59.908 45.833 12.47 0.00 0.00 1.73
88 89 3.617263 GGCTACGCGGATGATTAAATAGG 59.383 47.826 12.47 0.00 0.00 2.57
89 90 3.617263 GCTACGCGGATGATTAAATAGGG 59.383 47.826 12.47 0.00 0.00 3.53
90 91 2.423577 ACGCGGATGATTAAATAGGGC 58.576 47.619 12.47 0.00 0.00 5.19
91 92 2.038557 ACGCGGATGATTAAATAGGGCT 59.961 45.455 12.47 0.00 0.00 5.19
92 93 2.673368 CGCGGATGATTAAATAGGGCTC 59.327 50.000 0.00 0.00 0.00 4.70
93 94 3.674997 GCGGATGATTAAATAGGGCTCA 58.325 45.455 0.00 0.00 0.00 4.26
94 95 4.072131 GCGGATGATTAAATAGGGCTCAA 58.928 43.478 0.00 0.00 0.00 3.02
95 96 4.518970 GCGGATGATTAAATAGGGCTCAAA 59.481 41.667 0.00 0.00 0.00 2.69
96 97 5.009610 GCGGATGATTAAATAGGGCTCAAAA 59.990 40.000 0.00 0.00 0.00 2.44
97 98 6.438763 CGGATGATTAAATAGGGCTCAAAAC 58.561 40.000 0.00 0.00 0.00 2.43
98 99 6.438763 GGATGATTAAATAGGGCTCAAAACG 58.561 40.000 0.00 0.00 0.00 3.60
99 100 5.828299 TGATTAAATAGGGCTCAAAACGG 57.172 39.130 0.00 0.00 0.00 4.44
100 101 5.502079 TGATTAAATAGGGCTCAAAACGGA 58.498 37.500 0.00 0.00 0.00 4.69
101 102 5.355910 TGATTAAATAGGGCTCAAAACGGAC 59.644 40.000 0.00 0.00 0.00 4.79
102 103 2.871096 AATAGGGCTCAAAACGGACA 57.129 45.000 0.00 0.00 0.00 4.02
103 104 2.109425 ATAGGGCTCAAAACGGACAC 57.891 50.000 0.00 0.00 0.00 3.67
104 105 0.759959 TAGGGCTCAAAACGGACACA 59.240 50.000 0.00 0.00 0.00 3.72
105 106 0.818040 AGGGCTCAAAACGGACACAC 60.818 55.000 0.00 0.00 0.00 3.82
106 107 1.652563 GGCTCAAAACGGACACACC 59.347 57.895 0.00 0.00 0.00 4.16
107 108 1.652563 GCTCAAAACGGACACACCC 59.347 57.895 0.00 0.00 34.64 4.61
116 117 3.936203 GACACACCCGGCCACTGA 61.936 66.667 2.24 0.00 0.00 3.41
117 118 4.250305 ACACACCCGGCCACTGAC 62.250 66.667 2.24 0.00 0.00 3.51
139 140 4.459331 CACGTCCGCGGGCATTTG 62.459 66.667 31.65 19.24 43.45 2.32
140 141 4.690719 ACGTCCGCGGGCATTTGA 62.691 61.111 31.65 2.76 43.45 2.69
141 142 3.864686 CGTCCGCGGGCATTTGAG 61.865 66.667 31.65 8.31 0.00 3.02
142 143 3.508840 GTCCGCGGGCATTTGAGG 61.509 66.667 27.96 0.00 0.00 3.86
143 144 4.794648 TCCGCGGGCATTTGAGGG 62.795 66.667 27.83 0.00 0.00 4.30
146 147 3.140814 GCGGGCATTTGAGGGGTC 61.141 66.667 0.00 0.00 0.00 4.46
147 148 2.824041 CGGGCATTTGAGGGGTCG 60.824 66.667 0.00 0.00 0.00 4.79
148 149 2.355115 GGGCATTTGAGGGGTCGT 59.645 61.111 0.00 0.00 0.00 4.34
149 150 1.605453 GGGCATTTGAGGGGTCGTA 59.395 57.895 0.00 0.00 0.00 3.43
150 151 0.182775 GGGCATTTGAGGGGTCGTAT 59.817 55.000 0.00 0.00 0.00 3.06
151 152 1.409661 GGGCATTTGAGGGGTCGTATT 60.410 52.381 0.00 0.00 0.00 1.89
152 153 2.158726 GGGCATTTGAGGGGTCGTATTA 60.159 50.000 0.00 0.00 0.00 0.98
153 154 3.139077 GGCATTTGAGGGGTCGTATTAG 58.861 50.000 0.00 0.00 0.00 1.73
154 155 3.181458 GGCATTTGAGGGGTCGTATTAGA 60.181 47.826 0.00 0.00 0.00 2.10
155 156 4.058817 GCATTTGAGGGGTCGTATTAGAG 58.941 47.826 0.00 0.00 0.00 2.43
156 157 4.632153 CATTTGAGGGGTCGTATTAGAGG 58.368 47.826 0.00 0.00 0.00 3.69
157 158 3.393426 TTGAGGGGTCGTATTAGAGGT 57.607 47.619 0.00 0.00 0.00 3.85
158 159 4.524802 TTGAGGGGTCGTATTAGAGGTA 57.475 45.455 0.00 0.00 0.00 3.08
159 160 3.825328 TGAGGGGTCGTATTAGAGGTAC 58.175 50.000 0.00 0.00 0.00 3.34
160 161 2.810852 GAGGGGTCGTATTAGAGGTACG 59.189 54.545 0.00 0.00 44.56 3.67
161 162 2.173569 AGGGGTCGTATTAGAGGTACGT 59.826 50.000 0.00 0.00 43.84 3.57
162 163 2.291741 GGGGTCGTATTAGAGGTACGTG 59.708 54.545 0.00 0.00 43.84 4.49
163 164 3.206150 GGGTCGTATTAGAGGTACGTGA 58.794 50.000 0.00 0.00 43.84 4.35
164 165 3.002759 GGGTCGTATTAGAGGTACGTGAC 59.997 52.174 0.00 0.00 43.84 3.67
165 166 3.873952 GGTCGTATTAGAGGTACGTGACT 59.126 47.826 0.00 0.00 43.84 3.41
166 167 4.260538 GGTCGTATTAGAGGTACGTGACTG 60.261 50.000 0.00 0.00 43.84 3.51
167 168 4.568359 GTCGTATTAGAGGTACGTGACTGA 59.432 45.833 0.00 0.00 43.84 3.41
168 169 5.063944 GTCGTATTAGAGGTACGTGACTGAA 59.936 44.000 0.00 0.00 43.84 3.02
169 170 5.292834 TCGTATTAGAGGTACGTGACTGAAG 59.707 44.000 0.00 0.00 43.84 3.02
170 171 5.292834 CGTATTAGAGGTACGTGACTGAAGA 59.707 44.000 0.00 0.00 39.88 2.87
171 172 6.018098 CGTATTAGAGGTACGTGACTGAAGAT 60.018 42.308 0.00 0.00 39.88 2.40
172 173 5.562506 TTAGAGGTACGTGACTGAAGATG 57.437 43.478 0.00 0.00 0.00 2.90
173 174 2.755655 AGAGGTACGTGACTGAAGATGG 59.244 50.000 0.00 0.00 0.00 3.51
174 175 2.492484 GAGGTACGTGACTGAAGATGGT 59.508 50.000 0.00 0.00 0.00 3.55
175 176 2.492484 AGGTACGTGACTGAAGATGGTC 59.508 50.000 0.00 0.00 0.00 4.02
176 177 2.492484 GGTACGTGACTGAAGATGGTCT 59.508 50.000 0.00 0.00 34.01 3.85
177 178 3.693085 GGTACGTGACTGAAGATGGTCTA 59.307 47.826 0.00 0.00 34.01 2.59
178 179 4.157289 GGTACGTGACTGAAGATGGTCTAA 59.843 45.833 0.00 0.00 34.01 2.10
179 180 4.442375 ACGTGACTGAAGATGGTCTAAG 57.558 45.455 0.00 0.00 34.01 2.18
180 181 3.827302 ACGTGACTGAAGATGGTCTAAGT 59.173 43.478 0.00 0.00 34.01 2.24
181 182 4.082679 ACGTGACTGAAGATGGTCTAAGTC 60.083 45.833 12.37 12.37 39.18 3.01
182 183 4.156922 CGTGACTGAAGATGGTCTAAGTCT 59.843 45.833 16.90 0.00 39.33 3.24
183 184 5.336055 CGTGACTGAAGATGGTCTAAGTCTT 60.336 44.000 16.90 0.00 39.33 3.01
184 185 6.459923 GTGACTGAAGATGGTCTAAGTCTTT 58.540 40.000 16.90 0.00 39.33 2.52
185 186 6.367422 GTGACTGAAGATGGTCTAAGTCTTTG 59.633 42.308 16.90 0.00 39.33 2.77
186 187 5.241662 ACTGAAGATGGTCTAAGTCTTTGC 58.758 41.667 0.00 0.00 32.67 3.68
187 188 4.245660 TGAAGATGGTCTAAGTCTTTGCG 58.754 43.478 0.00 0.00 32.67 4.85
188 189 4.021456 TGAAGATGGTCTAAGTCTTTGCGA 60.021 41.667 0.00 0.00 32.67 5.10
189 190 4.537135 AGATGGTCTAAGTCTTTGCGAA 57.463 40.909 0.00 0.00 0.00 4.70
190 191 5.091261 AGATGGTCTAAGTCTTTGCGAAT 57.909 39.130 0.00 0.00 0.00 3.34
191 192 6.222038 AGATGGTCTAAGTCTTTGCGAATA 57.778 37.500 0.00 0.00 0.00 1.75
192 193 6.640518 AGATGGTCTAAGTCTTTGCGAATAA 58.359 36.000 0.00 0.00 0.00 1.40
193 194 7.275920 AGATGGTCTAAGTCTTTGCGAATAAT 58.724 34.615 0.00 0.00 0.00 1.28
194 195 7.770897 AGATGGTCTAAGTCTTTGCGAATAATT 59.229 33.333 0.00 0.00 0.00 1.40
195 196 8.958119 ATGGTCTAAGTCTTTGCGAATAATTA 57.042 30.769 0.00 0.00 0.00 1.40
196 197 8.780846 TGGTCTAAGTCTTTGCGAATAATTAA 57.219 30.769 0.00 0.00 0.00 1.40
197 198 9.391006 TGGTCTAAGTCTTTGCGAATAATTAAT 57.609 29.630 0.00 0.00 0.00 1.40
217 218 9.598517 AATTAATAAAATGGTTTCATGCATCGT 57.401 25.926 0.00 0.00 33.18 3.73
218 219 8.627487 TTAATAAAATGGTTTCATGCATCGTC 57.373 30.769 0.00 0.00 33.18 4.20
219 220 4.789012 AAAATGGTTTCATGCATCGTCT 57.211 36.364 0.00 0.00 33.18 4.18
220 221 4.361451 AAATGGTTTCATGCATCGTCTC 57.639 40.909 0.00 0.00 33.18 3.36
221 222 2.470983 TGGTTTCATGCATCGTCTCA 57.529 45.000 0.00 0.00 0.00 3.27
222 223 2.349590 TGGTTTCATGCATCGTCTCAG 58.650 47.619 0.00 0.00 0.00 3.35
223 224 2.028203 TGGTTTCATGCATCGTCTCAGA 60.028 45.455 0.00 0.00 0.00 3.27
224 225 3.201290 GGTTTCATGCATCGTCTCAGAT 58.799 45.455 0.00 0.00 0.00 2.90
225 226 8.111097 AATGGTTTCATGCATCGTCTCAGATG 62.111 42.308 0.00 2.87 40.62 2.90
232 233 3.433513 CATCGTCTCAGATGCAGAAGA 57.566 47.619 0.00 0.00 41.09 2.87
233 234 2.929531 TCGTCTCAGATGCAGAAGAC 57.070 50.000 9.37 9.37 0.00 3.01
234 235 1.131315 TCGTCTCAGATGCAGAAGACG 59.869 52.381 24.97 24.97 46.85 4.18
235 236 1.796982 CGTCTCAGATGCAGAAGACGG 60.797 57.143 23.99 12.65 43.36 4.79
236 237 1.474478 GTCTCAGATGCAGAAGACGGA 59.526 52.381 0.00 0.00 0.00 4.69
237 238 1.747924 TCTCAGATGCAGAAGACGGAG 59.252 52.381 0.00 0.00 0.00 4.63
238 239 0.820226 TCAGATGCAGAAGACGGAGG 59.180 55.000 0.00 0.00 0.00 4.30
239 240 0.534412 CAGATGCAGAAGACGGAGGT 59.466 55.000 0.00 0.00 0.00 3.85
240 241 0.820871 AGATGCAGAAGACGGAGGTC 59.179 55.000 0.00 0.00 43.76 3.85
241 242 0.532573 GATGCAGAAGACGGAGGTCA 59.467 55.000 0.00 0.00 45.92 4.02
242 243 1.137872 GATGCAGAAGACGGAGGTCAT 59.862 52.381 0.00 0.00 45.92 3.06
243 244 0.532573 TGCAGAAGACGGAGGTCATC 59.467 55.000 0.00 0.00 45.92 2.92
244 245 0.179097 GCAGAAGACGGAGGTCATCC 60.179 60.000 0.00 0.00 45.92 3.51
284 285 8.541133 AAAGTAAAAAGTGCATAGAGAGAGAC 57.459 34.615 0.00 0.00 0.00 3.36
285 286 7.475137 AGTAAAAAGTGCATAGAGAGAGACT 57.525 36.000 0.00 0.00 0.00 3.24
290 291 0.678950 GCATAGAGAGAGACTGGGGC 59.321 60.000 0.00 0.00 0.00 5.80
294 295 0.118144 AGAGAGAGACTGGGGCCTTT 59.882 55.000 0.84 0.00 0.00 3.11
301 302 1.220493 AGACTGGGGCCTTTCCTTTTT 59.780 47.619 0.84 0.00 34.39 1.94
303 304 0.976641 CTGGGGCCTTTCCTTTTTCC 59.023 55.000 0.84 0.00 34.39 3.13
304 305 0.266152 TGGGGCCTTTCCTTTTTCCA 59.734 50.000 0.84 0.00 34.39 3.53
305 306 1.344496 TGGGGCCTTTCCTTTTTCCAA 60.344 47.619 0.84 0.00 34.39 3.53
368 375 1.667830 TCTAGCACTTGCACGCACC 60.668 57.895 3.62 0.00 45.16 5.01
383 901 0.110192 GCACCGTTTACAGCTGAAGC 60.110 55.000 23.35 11.22 42.49 3.86
387 905 1.606668 CCGTTTACAGCTGAAGCCAAA 59.393 47.619 23.35 9.11 43.38 3.28
388 906 2.604614 CCGTTTACAGCTGAAGCCAAAC 60.605 50.000 23.35 18.21 43.38 2.93
391 909 2.638480 TACAGCTGAAGCCAAACAGT 57.362 45.000 23.35 0.00 43.38 3.55
393 911 2.222027 ACAGCTGAAGCCAAACAGTAC 58.778 47.619 23.35 0.00 43.38 2.73
395 913 3.071023 ACAGCTGAAGCCAAACAGTACTA 59.929 43.478 23.35 0.00 43.38 1.82
396 914 3.681897 CAGCTGAAGCCAAACAGTACTAG 59.318 47.826 8.42 0.00 43.38 2.57
433 951 4.864806 TGTCGTGTCATCTCAGCTTTATTC 59.135 41.667 0.00 0.00 0.00 1.75
434 952 5.105752 GTCGTGTCATCTCAGCTTTATTCT 58.894 41.667 0.00 0.00 0.00 2.40
435 953 6.127730 TGTCGTGTCATCTCAGCTTTATTCTA 60.128 38.462 0.00 0.00 0.00 2.10
436 954 6.197468 GTCGTGTCATCTCAGCTTTATTCTAC 59.803 42.308 0.00 0.00 0.00 2.59
437 955 6.095580 TCGTGTCATCTCAGCTTTATTCTACT 59.904 38.462 0.00 0.00 0.00 2.57
438 956 7.282450 TCGTGTCATCTCAGCTTTATTCTACTA 59.718 37.037 0.00 0.00 0.00 1.82
439 957 7.589587 CGTGTCATCTCAGCTTTATTCTACTAG 59.410 40.741 0.00 0.00 0.00 2.57
440 958 8.410141 GTGTCATCTCAGCTTTATTCTACTAGT 58.590 37.037 0.00 0.00 0.00 2.57
441 959 9.628500 TGTCATCTCAGCTTTATTCTACTAGTA 57.372 33.333 1.89 1.89 0.00 1.82
459 977 7.899648 ACTAGTATTTATCAGTGGCACTAGT 57.100 36.000 21.59 12.88 41.27 2.57
463 981 7.717568 AGTATTTATCAGTGGCACTAGTACTG 58.282 38.462 21.59 15.38 42.34 2.74
477 995 0.460311 GTACTGCTGTGGATAGGCGT 59.540 55.000 6.48 0.00 0.00 5.68
515 1036 1.955495 TACCACACGGCGAGCATCAT 61.955 55.000 16.62 0.00 34.57 2.45
516 1037 2.705220 CACACGGCGAGCATCATG 59.295 61.111 16.62 0.95 33.17 3.07
533 1054 3.987745 TCATGCTAGTCTCTTCCCTTCT 58.012 45.455 0.00 0.00 0.00 2.85
534 1055 4.357325 TCATGCTAGTCTCTTCCCTTCTT 58.643 43.478 0.00 0.00 0.00 2.52
535 1056 4.404073 TCATGCTAGTCTCTTCCCTTCTTC 59.596 45.833 0.00 0.00 0.00 2.87
536 1057 4.054359 TGCTAGTCTCTTCCCTTCTTCT 57.946 45.455 0.00 0.00 0.00 2.85
537 1058 3.766591 TGCTAGTCTCTTCCCTTCTTCTG 59.233 47.826 0.00 0.00 0.00 3.02
656 1178 2.359850 CCTGCCTAGCCGCAAACA 60.360 61.111 0.00 0.00 38.56 2.83
1061 1713 0.896940 AAGACCTTGCCGGACGAGTA 60.897 55.000 5.05 0.00 36.31 2.59
1244 1905 1.633432 TGTAGGCAGCTACCCAACAAT 59.367 47.619 0.00 0.00 0.00 2.71
1297 1978 5.316167 ACTAGCTTGAATCATGTGGTTTGA 58.684 37.500 1.04 0.00 0.00 2.69
1299 1980 3.890756 AGCTTGAATCATGTGGTTTGACA 59.109 39.130 0.00 0.00 0.00 3.58
1665 2360 2.320587 GCTGCTCAACTGGGTCGTG 61.321 63.158 0.00 0.00 0.00 4.35
1874 2581 5.551760 ATGCTCTGGTTCGTATTTTCTTG 57.448 39.130 0.00 0.00 0.00 3.02
1877 2584 4.670221 GCTCTGGTTCGTATTTTCTTGCTG 60.670 45.833 0.00 0.00 0.00 4.41
1879 2586 4.213270 TCTGGTTCGTATTTTCTTGCTGTG 59.787 41.667 0.00 0.00 0.00 3.66
1880 2587 3.880490 TGGTTCGTATTTTCTTGCTGTGT 59.120 39.130 0.00 0.00 0.00 3.72
1885 2592 6.371809 TCGTATTTTCTTGCTGTGTTTCTT 57.628 33.333 0.00 0.00 0.00 2.52
1886 2593 6.427150 TCGTATTTTCTTGCTGTGTTTCTTC 58.573 36.000 0.00 0.00 0.00 2.87
1888 2595 6.140737 CGTATTTTCTTGCTGTGTTTCTTCAC 59.859 38.462 0.00 0.00 38.63 3.18
1889 2596 4.370364 TTTCTTGCTGTGTTTCTTCACC 57.630 40.909 0.00 0.00 37.51 4.02
1890 2597 1.939934 TCTTGCTGTGTTTCTTCACCG 59.060 47.619 0.00 0.00 37.51 4.94
1892 2599 1.295792 TGCTGTGTTTCTTCACCGAC 58.704 50.000 0.00 0.00 37.51 4.79
1920 2663 4.095483 AGCACTTGTGTTTTCTTCTGAGTG 59.905 41.667 2.61 0.00 37.05 3.51
1922 2665 3.947834 ACTTGTGTTTTCTTCTGAGTGGG 59.052 43.478 0.00 0.00 0.00 4.61
1924 2667 4.437682 TGTGTTTTCTTCTGAGTGGGAT 57.562 40.909 0.00 0.00 0.00 3.85
1925 2668 4.136796 TGTGTTTTCTTCTGAGTGGGATG 58.863 43.478 0.00 0.00 0.00 3.51
2079 2866 2.432146 TGACAGTGCTTGTTCTGAGACT 59.568 45.455 0.00 0.00 41.05 3.24
2090 2892 6.652900 GCTTGTTCTGAGACTTCTCCTAAAAT 59.347 38.462 3.77 0.00 42.20 1.82
2147 2951 1.480545 TGGACACTGATGGTATCCGTG 59.519 52.381 10.51 10.51 46.06 4.94
2190 2998 4.368391 CAGTTGCTCTGCTCCGTT 57.632 55.556 0.00 0.00 37.36 4.44
2191 2999 2.157421 CAGTTGCTCTGCTCCGTTC 58.843 57.895 0.00 0.00 37.36 3.95
2192 3000 0.320247 CAGTTGCTCTGCTCCGTTCT 60.320 55.000 0.00 0.00 37.36 3.01
2193 3001 0.037790 AGTTGCTCTGCTCCGTTCTC 60.038 55.000 0.00 0.00 0.00 2.87
2194 3002 1.016653 GTTGCTCTGCTCCGTTCTCC 61.017 60.000 0.00 0.00 0.00 3.71
2195 3003 1.188219 TTGCTCTGCTCCGTTCTCCT 61.188 55.000 0.00 0.00 0.00 3.69
2218 3026 3.567478 CCCCCTTCTAATTCCTCACTG 57.433 52.381 0.00 0.00 0.00 3.66
2219 3027 2.422093 CCCCCTTCTAATTCCTCACTGC 60.422 54.545 0.00 0.00 0.00 4.40
2222 3030 3.117738 CCCTTCTAATTCCTCACTGCCAT 60.118 47.826 0.00 0.00 0.00 4.40
2223 3031 4.530875 CCTTCTAATTCCTCACTGCCATT 58.469 43.478 0.00 0.00 0.00 3.16
2225 3033 5.420104 CCTTCTAATTCCTCACTGCCATTTT 59.580 40.000 0.00 0.00 0.00 1.82
2226 3034 6.405176 CCTTCTAATTCCTCACTGCCATTTTC 60.405 42.308 0.00 0.00 0.00 2.29
2229 3037 0.322456 TCCTCACTGCCATTTTCCGG 60.322 55.000 0.00 0.00 0.00 5.14
2230 3038 0.609131 CCTCACTGCCATTTTCCGGT 60.609 55.000 0.00 0.00 0.00 5.28
2231 3039 1.247567 CTCACTGCCATTTTCCGGTT 58.752 50.000 0.00 0.00 0.00 4.44
2232 3040 1.613437 CTCACTGCCATTTTCCGGTTT 59.387 47.619 0.00 0.00 0.00 3.27
2233 3041 1.611491 TCACTGCCATTTTCCGGTTTC 59.389 47.619 0.00 0.00 0.00 2.78
2234 3042 0.966179 ACTGCCATTTTCCGGTTTCC 59.034 50.000 0.00 0.00 0.00 3.13
2235 3043 0.246360 CTGCCATTTTCCGGTTTCCC 59.754 55.000 0.00 0.00 0.00 3.97
2236 3044 0.470080 TGCCATTTTCCGGTTTCCCA 60.470 50.000 0.00 0.00 0.00 4.37
2237 3045 0.246360 GCCATTTTCCGGTTTCCCAG 59.754 55.000 0.00 0.00 0.00 4.45
2238 3046 1.917872 CCATTTTCCGGTTTCCCAGA 58.082 50.000 0.00 0.00 0.00 3.86
2239 3047 1.544246 CCATTTTCCGGTTTCCCAGAC 59.456 52.381 0.00 0.00 0.00 3.51
2240 3048 2.235016 CATTTTCCGGTTTCCCAGACA 58.765 47.619 0.00 0.00 0.00 3.41
2241 3049 2.668144 TTTTCCGGTTTCCCAGACAT 57.332 45.000 0.00 0.00 0.00 3.06
2250 3058 3.507622 GGTTTCCCAGACATTTCCAAGAG 59.492 47.826 0.00 0.00 0.00 2.85
2252 3060 4.722526 TTCCCAGACATTTCCAAGAGAA 57.277 40.909 0.00 0.00 0.00 2.87
2274 3082 1.065410 TGACCCACACCCATCCTGTT 61.065 55.000 0.00 0.00 0.00 3.16
2283 3091 2.884639 CACCCATCCTGTTTCTCGTTTT 59.115 45.455 0.00 0.00 0.00 2.43
2540 3348 1.367840 CCGGTGCTATCAGGTAGGC 59.632 63.158 0.00 0.00 0.00 3.93
2555 3363 4.100035 CAGGTAGGCATACTCACTCATCAA 59.900 45.833 8.63 0.00 32.12 2.57
2599 3407 4.887071 TGGAAAGTAAATGTGTTGACAGCT 59.113 37.500 0.00 0.00 34.87 4.24
2635 3446 1.464608 GTGTGTGATCATCGTTGGTGG 59.535 52.381 0.00 0.00 0.00 4.61
2638 3449 2.552315 GTGTGATCATCGTTGGTGGTTT 59.448 45.455 0.00 0.00 0.00 3.27
2639 3450 3.004315 GTGTGATCATCGTTGGTGGTTTT 59.996 43.478 0.00 0.00 0.00 2.43
2745 3560 1.355066 CGGTCTTCGGCTTCAAGCTC 61.355 60.000 9.83 0.00 41.99 4.09
2764 3579 0.306533 CAAGCTTAACGCAACGGTGT 59.693 50.000 0.66 0.00 42.61 4.16
2765 3580 0.306533 AAGCTTAACGCAACGGTGTG 59.693 50.000 13.54 13.54 42.61 3.82
2766 3581 1.082366 GCTTAACGCAACGGTGTGG 60.082 57.895 19.75 5.47 39.72 4.17
2834 3656 7.927629 TCTGATTTTTCTTTTCAGGTGAAATGG 59.072 33.333 14.84 8.31 42.83 3.16
2880 3702 0.756815 GGATTTGGGTGGGGATGCTC 60.757 60.000 0.00 0.00 0.00 4.26
3021 3843 4.895224 AACTCGATCGTAGTTGCATCTA 57.105 40.909 23.15 0.15 35.87 1.98
3058 3884 1.213182 TGCACTAAGTTTGGGTGGTGA 59.787 47.619 0.00 0.00 0.00 4.02
3164 3990 1.966451 GGAACGGACAAGGCTGGTG 60.966 63.158 0.00 0.00 0.00 4.17
3193 4019 5.302568 ACACATCACACAAATTTGACAGGAT 59.697 36.000 24.64 16.40 0.00 3.24
3198 4024 6.303054 TCACACAAATTTGACAGGATAGGAA 58.697 36.000 24.64 0.00 0.00 3.36
3200 4026 5.711976 ACACAAATTTGACAGGATAGGAAGG 59.288 40.000 24.64 0.00 0.00 3.46
3201 4027 5.126061 CACAAATTTGACAGGATAGGAAGGG 59.874 44.000 24.64 0.00 0.00 3.95
3202 4028 4.526438 AATTTGACAGGATAGGAAGGGG 57.474 45.455 0.00 0.00 0.00 4.79
3203 4029 2.661176 TTGACAGGATAGGAAGGGGT 57.339 50.000 0.00 0.00 0.00 4.95
3205 4031 3.042059 TGACAGGATAGGAAGGGGTAC 57.958 52.381 0.00 0.00 0.00 3.34
3207 4033 2.699321 GACAGGATAGGAAGGGGTACAC 59.301 54.545 0.00 0.00 0.00 2.90
3208 4034 2.045326 ACAGGATAGGAAGGGGTACACA 59.955 50.000 0.00 0.00 0.00 3.72
3209 4035 3.112263 CAGGATAGGAAGGGGTACACAA 58.888 50.000 0.00 0.00 0.00 3.33
3210 4036 3.521937 CAGGATAGGAAGGGGTACACAAA 59.478 47.826 0.00 0.00 0.00 2.83
3211 4037 3.780850 AGGATAGGAAGGGGTACACAAAG 59.219 47.826 0.00 0.00 0.00 2.77
3212 4038 3.522343 GGATAGGAAGGGGTACACAAAGT 59.478 47.826 0.00 0.00 0.00 2.66
3213 4039 4.718276 GGATAGGAAGGGGTACACAAAGTA 59.282 45.833 0.00 0.00 0.00 2.24
3214 4040 5.368816 GGATAGGAAGGGGTACACAAAGTAT 59.631 44.000 0.00 0.00 34.67 2.12
3215 4041 6.556116 GGATAGGAAGGGGTACACAAAGTATA 59.444 42.308 0.00 0.00 34.67 1.47
3440 4269 0.329261 TGCCCCCTCAATCTGAACTG 59.671 55.000 0.00 0.00 0.00 3.16
3538 4367 5.238214 GCTGATCATCAGTTGAGATAAACCC 59.762 44.000 16.28 0.00 45.94 4.11
3601 4430 8.767478 AAATGGAAATCAATCTCAATGTGTTC 57.233 30.769 0.00 0.00 0.00 3.18
3655 4484 5.965705 TCAGGTAAGTTGCCCCTAAGTTATA 59.034 40.000 6.35 0.00 30.60 0.98
3845 4674 4.160252 CCAACAAATATAGCAAAGCCACCT 59.840 41.667 0.00 0.00 0.00 4.00
3855 4684 0.396811 AAAGCCACCTGTAGAACGCT 59.603 50.000 0.00 0.00 0.00 5.07
3901 4730 5.244851 AGTCTGCATCGGTGAATATACTGAT 59.755 40.000 0.00 0.00 45.21 2.90
3999 4828 2.617021 GCTTCCCAATGAACCTCCGTAA 60.617 50.000 0.00 0.00 0.00 3.18
4118 4947 4.135306 TGAAAGAGTCGTCAGTACTCAGT 58.865 43.478 6.06 0.00 44.77 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.809562 ACGTGATTGCTAGAGATGAAGAAAG 59.190 40.000 0.00 0.00 0.00 2.62
3 4 5.578336 CACGTGATTGCTAGAGATGAAGAAA 59.422 40.000 10.90 0.00 0.00 2.52
4 5 5.105063 CACGTGATTGCTAGAGATGAAGAA 58.895 41.667 10.90 0.00 0.00 2.52
5 6 4.676546 CACGTGATTGCTAGAGATGAAGA 58.323 43.478 10.90 0.00 0.00 2.87
6 7 3.244814 GCACGTGATTGCTAGAGATGAAG 59.755 47.826 22.23 0.00 39.59 3.02
7 8 3.190079 GCACGTGATTGCTAGAGATGAA 58.810 45.455 22.23 0.00 39.59 2.57
8 9 2.166254 TGCACGTGATTGCTAGAGATGA 59.834 45.455 22.23 0.00 43.41 2.92
9 10 2.543641 TGCACGTGATTGCTAGAGATG 58.456 47.619 22.23 0.00 43.41 2.90
10 11 2.967599 TGCACGTGATTGCTAGAGAT 57.032 45.000 22.23 0.00 43.41 2.75
11 12 2.029020 ACTTGCACGTGATTGCTAGAGA 60.029 45.455 22.23 0.00 45.00 3.10
12 13 2.093310 CACTTGCACGTGATTGCTAGAG 59.907 50.000 22.23 5.02 45.00 2.43
13 14 2.068519 CACTTGCACGTGATTGCTAGA 58.931 47.619 22.23 0.00 45.00 2.43
14 15 2.068519 TCACTTGCACGTGATTGCTAG 58.931 47.619 20.99 12.51 46.78 3.42
15 16 1.798223 GTCACTTGCACGTGATTGCTA 59.202 47.619 26.42 2.80 44.84 3.49
16 17 0.588252 GTCACTTGCACGTGATTGCT 59.412 50.000 26.42 0.00 44.84 3.91
17 18 0.588252 AGTCACTTGCACGTGATTGC 59.412 50.000 26.42 15.16 44.84 3.56
18 19 1.069703 CCAGTCACTTGCACGTGATTG 60.070 52.381 30.15 30.15 45.61 2.67
19 20 1.202639 TCCAGTCACTTGCACGTGATT 60.203 47.619 26.42 20.48 44.84 2.57
20 21 0.392706 TCCAGTCACTTGCACGTGAT 59.607 50.000 26.42 14.03 44.84 3.06
21 22 0.529773 GTCCAGTCACTTGCACGTGA 60.530 55.000 20.99 20.99 41.33 4.35
22 23 0.809636 TGTCCAGTCACTTGCACGTG 60.810 55.000 16.76 16.76 36.25 4.49
23 24 0.106708 ATGTCCAGTCACTTGCACGT 59.893 50.000 0.00 0.00 0.00 4.49
24 25 0.514255 CATGTCCAGTCACTTGCACG 59.486 55.000 0.00 0.00 0.00 5.34
25 26 1.265095 CACATGTCCAGTCACTTGCAC 59.735 52.381 0.00 0.00 0.00 4.57
26 27 1.140652 TCACATGTCCAGTCACTTGCA 59.859 47.619 0.00 0.00 0.00 4.08
27 28 1.802960 CTCACATGTCCAGTCACTTGC 59.197 52.381 0.00 0.00 0.00 4.01
28 29 3.391506 TCTCACATGTCCAGTCACTTG 57.608 47.619 0.00 0.00 0.00 3.16
29 30 4.101585 TCTTTCTCACATGTCCAGTCACTT 59.898 41.667 0.00 0.00 0.00 3.16
30 31 3.643320 TCTTTCTCACATGTCCAGTCACT 59.357 43.478 0.00 0.00 0.00 3.41
31 32 3.995199 TCTTTCTCACATGTCCAGTCAC 58.005 45.455 0.00 0.00 0.00 3.67
32 33 4.687901 TTCTTTCTCACATGTCCAGTCA 57.312 40.909 0.00 0.00 0.00 3.41
33 34 5.296780 TGTTTTCTTTCTCACATGTCCAGTC 59.703 40.000 0.00 0.00 0.00 3.51
34 35 5.192927 TGTTTTCTTTCTCACATGTCCAGT 58.807 37.500 0.00 0.00 0.00 4.00
35 36 5.756195 TGTTTTCTTTCTCACATGTCCAG 57.244 39.130 0.00 0.00 0.00 3.86
36 37 5.067674 CCTTGTTTTCTTTCTCACATGTCCA 59.932 40.000 0.00 0.00 0.00 4.02
37 38 5.299279 TCCTTGTTTTCTTTCTCACATGTCC 59.701 40.000 0.00 0.00 0.00 4.02
38 39 6.377327 TCCTTGTTTTCTTTCTCACATGTC 57.623 37.500 0.00 0.00 0.00 3.06
39 40 6.966534 ATCCTTGTTTTCTTTCTCACATGT 57.033 33.333 0.00 0.00 0.00 3.21
40 41 7.168637 CACAATCCTTGTTTTCTTTCTCACATG 59.831 37.037 0.00 0.00 43.23 3.21
41 42 7.205297 CACAATCCTTGTTTTCTTTCTCACAT 58.795 34.615 0.00 0.00 43.23 3.21
42 43 6.405731 CCACAATCCTTGTTTTCTTTCTCACA 60.406 38.462 0.00 0.00 43.23 3.58
43 44 5.979517 CCACAATCCTTGTTTTCTTTCTCAC 59.020 40.000 0.00 0.00 43.23 3.51
44 45 5.451798 GCCACAATCCTTGTTTTCTTTCTCA 60.452 40.000 0.00 0.00 43.23 3.27
45 46 4.984785 GCCACAATCCTTGTTTTCTTTCTC 59.015 41.667 0.00 0.00 43.23 2.87
46 47 4.651045 AGCCACAATCCTTGTTTTCTTTCT 59.349 37.500 0.00 0.00 43.23 2.52
47 48 4.948847 AGCCACAATCCTTGTTTTCTTTC 58.051 39.130 0.00 0.00 43.23 2.62
48 49 5.507315 CGTAGCCACAATCCTTGTTTTCTTT 60.507 40.000 0.00 0.00 43.23 2.52
49 50 4.023193 CGTAGCCACAATCCTTGTTTTCTT 60.023 41.667 0.00 0.00 43.23 2.52
50 51 3.502211 CGTAGCCACAATCCTTGTTTTCT 59.498 43.478 0.00 0.00 43.23 2.52
51 52 3.821841 CGTAGCCACAATCCTTGTTTTC 58.178 45.455 0.00 0.00 43.23 2.29
52 53 3.915437 CGTAGCCACAATCCTTGTTTT 57.085 42.857 0.00 0.00 43.23 2.43
68 69 3.617263 GCCCTATTTAATCATCCGCGTAG 59.383 47.826 4.92 0.00 0.00 3.51
69 70 3.259876 AGCCCTATTTAATCATCCGCGTA 59.740 43.478 4.92 0.00 0.00 4.42
70 71 2.038557 AGCCCTATTTAATCATCCGCGT 59.961 45.455 4.92 0.00 0.00 6.01
71 72 2.673368 GAGCCCTATTTAATCATCCGCG 59.327 50.000 0.00 0.00 0.00 6.46
72 73 3.674997 TGAGCCCTATTTAATCATCCGC 58.325 45.455 0.00 0.00 0.00 5.54
73 74 6.438763 GTTTTGAGCCCTATTTAATCATCCG 58.561 40.000 0.00 0.00 0.00 4.18
74 75 6.438763 CGTTTTGAGCCCTATTTAATCATCC 58.561 40.000 0.00 0.00 0.00 3.51
75 76 6.262273 TCCGTTTTGAGCCCTATTTAATCATC 59.738 38.462 0.00 0.00 0.00 2.92
76 77 6.039382 GTCCGTTTTGAGCCCTATTTAATCAT 59.961 38.462 0.00 0.00 0.00 2.45
77 78 5.355910 GTCCGTTTTGAGCCCTATTTAATCA 59.644 40.000 0.00 0.00 0.00 2.57
78 79 5.355910 TGTCCGTTTTGAGCCCTATTTAATC 59.644 40.000 0.00 0.00 0.00 1.75
79 80 5.124936 GTGTCCGTTTTGAGCCCTATTTAAT 59.875 40.000 0.00 0.00 0.00 1.40
80 81 4.456566 GTGTCCGTTTTGAGCCCTATTTAA 59.543 41.667 0.00 0.00 0.00 1.52
81 82 4.004982 GTGTCCGTTTTGAGCCCTATTTA 58.995 43.478 0.00 0.00 0.00 1.40
82 83 2.817844 GTGTCCGTTTTGAGCCCTATTT 59.182 45.455 0.00 0.00 0.00 1.40
83 84 2.224670 TGTGTCCGTTTTGAGCCCTATT 60.225 45.455 0.00 0.00 0.00 1.73
84 85 1.349688 TGTGTCCGTTTTGAGCCCTAT 59.650 47.619 0.00 0.00 0.00 2.57
85 86 0.759959 TGTGTCCGTTTTGAGCCCTA 59.240 50.000 0.00 0.00 0.00 3.53
86 87 0.818040 GTGTGTCCGTTTTGAGCCCT 60.818 55.000 0.00 0.00 0.00 5.19
87 88 1.652563 GTGTGTCCGTTTTGAGCCC 59.347 57.895 0.00 0.00 0.00 5.19
88 89 1.652563 GGTGTGTCCGTTTTGAGCC 59.347 57.895 0.00 0.00 0.00 4.70
89 90 1.652563 GGGTGTGTCCGTTTTGAGC 59.347 57.895 0.00 0.00 37.00 4.26
90 91 1.938861 CGGGTGTGTCCGTTTTGAG 59.061 57.895 0.00 0.00 44.60 3.02
91 92 4.128139 CGGGTGTGTCCGTTTTGA 57.872 55.556 0.00 0.00 44.60 2.69
99 100 3.936203 TCAGTGGCCGGGTGTGTC 61.936 66.667 2.18 0.00 0.00 3.67
100 101 4.250305 GTCAGTGGCCGGGTGTGT 62.250 66.667 2.18 0.00 0.00 3.72
122 123 4.459331 CAAATGCCCGCGGACGTG 62.459 66.667 30.73 11.36 37.70 4.49
123 124 4.690719 TCAAATGCCCGCGGACGT 62.691 61.111 30.73 15.48 37.70 4.34
124 125 3.864686 CTCAAATGCCCGCGGACG 61.865 66.667 30.73 12.70 39.67 4.79
125 126 3.508840 CCTCAAATGCCCGCGGAC 61.509 66.667 30.73 18.13 0.00 4.79
126 127 4.794648 CCCTCAAATGCCCGCGGA 62.795 66.667 30.73 8.21 0.00 5.54
129 130 3.140814 GACCCCTCAAATGCCCGC 61.141 66.667 0.00 0.00 0.00 6.13
130 131 2.246761 TACGACCCCTCAAATGCCCG 62.247 60.000 0.00 0.00 0.00 6.13
131 132 0.182775 ATACGACCCCTCAAATGCCC 59.817 55.000 0.00 0.00 0.00 5.36
132 133 2.052782 AATACGACCCCTCAAATGCC 57.947 50.000 0.00 0.00 0.00 4.40
133 134 4.058817 CTCTAATACGACCCCTCAAATGC 58.941 47.826 0.00 0.00 0.00 3.56
134 135 4.101119 ACCTCTAATACGACCCCTCAAATG 59.899 45.833 0.00 0.00 0.00 2.32
135 136 4.296056 ACCTCTAATACGACCCCTCAAAT 58.704 43.478 0.00 0.00 0.00 2.32
136 137 3.716431 ACCTCTAATACGACCCCTCAAA 58.284 45.455 0.00 0.00 0.00 2.69
137 138 3.393426 ACCTCTAATACGACCCCTCAA 57.607 47.619 0.00 0.00 0.00 3.02
138 139 3.745480 CGTACCTCTAATACGACCCCTCA 60.745 52.174 0.00 0.00 46.60 3.86
139 140 2.810852 CGTACCTCTAATACGACCCCTC 59.189 54.545 0.00 0.00 46.60 4.30
140 141 2.173569 ACGTACCTCTAATACGACCCCT 59.826 50.000 11.19 0.00 46.60 4.79
141 142 2.291741 CACGTACCTCTAATACGACCCC 59.708 54.545 11.19 0.00 46.60 4.95
142 143 3.002759 GTCACGTACCTCTAATACGACCC 59.997 52.174 11.19 0.00 46.60 4.46
143 144 3.873952 AGTCACGTACCTCTAATACGACC 59.126 47.826 11.19 0.00 46.60 4.79
144 145 4.568359 TCAGTCACGTACCTCTAATACGAC 59.432 45.833 11.19 0.77 46.60 4.34
145 146 4.758688 TCAGTCACGTACCTCTAATACGA 58.241 43.478 11.19 0.00 46.60 3.43
147 148 6.674694 TCTTCAGTCACGTACCTCTAATAC 57.325 41.667 0.00 0.00 0.00 1.89
148 149 6.262496 CCATCTTCAGTCACGTACCTCTAATA 59.738 42.308 0.00 0.00 0.00 0.98
149 150 5.067936 CCATCTTCAGTCACGTACCTCTAAT 59.932 44.000 0.00 0.00 0.00 1.73
150 151 4.398358 CCATCTTCAGTCACGTACCTCTAA 59.602 45.833 0.00 0.00 0.00 2.10
151 152 3.945921 CCATCTTCAGTCACGTACCTCTA 59.054 47.826 0.00 0.00 0.00 2.43
152 153 2.755655 CCATCTTCAGTCACGTACCTCT 59.244 50.000 0.00 0.00 0.00 3.69
153 154 2.492484 ACCATCTTCAGTCACGTACCTC 59.508 50.000 0.00 0.00 0.00 3.85
154 155 2.492484 GACCATCTTCAGTCACGTACCT 59.508 50.000 0.00 0.00 33.08 3.08
155 156 2.492484 AGACCATCTTCAGTCACGTACC 59.508 50.000 0.00 0.00 35.38 3.34
156 157 3.851976 AGACCATCTTCAGTCACGTAC 57.148 47.619 0.00 0.00 35.38 3.67
157 158 5.008331 ACTTAGACCATCTTCAGTCACGTA 58.992 41.667 0.00 0.00 35.38 3.57
158 159 3.827302 ACTTAGACCATCTTCAGTCACGT 59.173 43.478 0.00 0.00 35.38 4.49
159 160 4.156922 AGACTTAGACCATCTTCAGTCACG 59.843 45.833 15.19 0.00 37.74 4.35
160 161 5.652994 AGACTTAGACCATCTTCAGTCAC 57.347 43.478 15.19 0.00 37.74 3.67
161 162 6.459066 CAAAGACTTAGACCATCTTCAGTCA 58.541 40.000 15.19 0.00 37.74 3.41
162 163 5.350091 GCAAAGACTTAGACCATCTTCAGTC 59.650 44.000 8.72 8.72 36.55 3.51
163 164 5.241662 GCAAAGACTTAGACCATCTTCAGT 58.758 41.667 0.00 0.00 31.44 3.41
164 165 4.328440 CGCAAAGACTTAGACCATCTTCAG 59.672 45.833 0.00 0.00 31.44 3.02
165 166 4.021456 TCGCAAAGACTTAGACCATCTTCA 60.021 41.667 0.00 0.00 31.44 3.02
166 167 4.495422 TCGCAAAGACTTAGACCATCTTC 58.505 43.478 0.00 0.00 31.44 2.87
167 168 4.537135 TCGCAAAGACTTAGACCATCTT 57.463 40.909 0.00 0.00 34.11 2.40
168 169 4.537135 TTCGCAAAGACTTAGACCATCT 57.463 40.909 0.00 0.00 0.00 2.90
169 170 6.903883 TTATTCGCAAAGACTTAGACCATC 57.096 37.500 0.00 0.00 0.00 3.51
170 171 7.865706 AATTATTCGCAAAGACTTAGACCAT 57.134 32.000 0.00 0.00 0.00 3.55
171 172 8.780846 TTAATTATTCGCAAAGACTTAGACCA 57.219 30.769 0.00 0.00 0.00 4.02
191 192 9.598517 ACGATGCATGAAACCATTTTATTAATT 57.401 25.926 2.46 0.00 0.00 1.40
192 193 9.248291 GACGATGCATGAAACCATTTTATTAAT 57.752 29.630 2.46 0.00 0.00 1.40
193 194 8.465999 AGACGATGCATGAAACCATTTTATTAA 58.534 29.630 2.46 0.00 0.00 1.40
194 195 7.995289 AGACGATGCATGAAACCATTTTATTA 58.005 30.769 2.46 0.00 0.00 0.98
195 196 6.866480 AGACGATGCATGAAACCATTTTATT 58.134 32.000 2.46 0.00 0.00 1.40
196 197 6.095300 TGAGACGATGCATGAAACCATTTTAT 59.905 34.615 2.46 0.00 0.00 1.40
197 198 5.414144 TGAGACGATGCATGAAACCATTTTA 59.586 36.000 2.46 0.00 0.00 1.52
198 199 4.218200 TGAGACGATGCATGAAACCATTTT 59.782 37.500 2.46 0.00 0.00 1.82
199 200 3.758023 TGAGACGATGCATGAAACCATTT 59.242 39.130 2.46 0.00 0.00 2.32
200 201 3.346315 TGAGACGATGCATGAAACCATT 58.654 40.909 2.46 0.00 0.00 3.16
201 202 2.941064 CTGAGACGATGCATGAAACCAT 59.059 45.455 2.46 0.00 0.00 3.55
202 203 2.028203 TCTGAGACGATGCATGAAACCA 60.028 45.455 2.46 0.00 0.00 3.67
203 204 2.621338 TCTGAGACGATGCATGAAACC 58.379 47.619 2.46 0.00 0.00 3.27
204 205 4.193021 CATCTGAGACGATGCATGAAAC 57.807 45.455 2.46 0.00 34.92 2.78
212 213 3.114809 GTCTTCTGCATCTGAGACGATG 58.885 50.000 0.00 0.00 42.83 3.84
213 214 3.435105 GTCTTCTGCATCTGAGACGAT 57.565 47.619 0.00 0.00 0.00 3.73
214 215 2.929531 GTCTTCTGCATCTGAGACGA 57.070 50.000 0.00 0.00 0.00 4.20
215 216 1.543614 CGTCTTCTGCATCTGAGACG 58.456 55.000 19.55 19.55 41.99 4.18
216 217 1.474478 TCCGTCTTCTGCATCTGAGAC 59.526 52.381 0.00 0.00 0.00 3.36
217 218 1.747924 CTCCGTCTTCTGCATCTGAGA 59.252 52.381 0.00 0.00 0.00 3.27
218 219 1.202394 CCTCCGTCTTCTGCATCTGAG 60.202 57.143 0.00 0.00 0.00 3.35
219 220 0.820226 CCTCCGTCTTCTGCATCTGA 59.180 55.000 0.00 0.00 0.00 3.27
220 221 0.534412 ACCTCCGTCTTCTGCATCTG 59.466 55.000 0.00 0.00 0.00 2.90
221 222 0.820871 GACCTCCGTCTTCTGCATCT 59.179 55.000 0.00 0.00 35.99 2.90
222 223 0.532573 TGACCTCCGTCTTCTGCATC 59.467 55.000 0.00 0.00 39.94 3.91
223 224 1.137872 GATGACCTCCGTCTTCTGCAT 59.862 52.381 0.00 0.00 39.15 3.96
224 225 0.532573 GATGACCTCCGTCTTCTGCA 59.467 55.000 0.00 0.00 39.15 4.41
225 226 0.179097 GGATGACCTCCGTCTTCTGC 60.179 60.000 6.23 0.00 41.01 4.26
257 258 9.561069 TCTCTCTCTATGCACTTTTTACTTTTT 57.439 29.630 0.00 0.00 0.00 1.94
258 259 8.994170 GTCTCTCTCTATGCACTTTTTACTTTT 58.006 33.333 0.00 0.00 0.00 2.27
259 260 8.371699 AGTCTCTCTCTATGCACTTTTTACTTT 58.628 33.333 0.00 0.00 0.00 2.66
260 261 7.816995 CAGTCTCTCTCTATGCACTTTTTACTT 59.183 37.037 0.00 0.00 0.00 2.24
261 262 7.319646 CAGTCTCTCTCTATGCACTTTTTACT 58.680 38.462 0.00 0.00 0.00 2.24
262 263 6.533367 CCAGTCTCTCTCTATGCACTTTTTAC 59.467 42.308 0.00 0.00 0.00 2.01
263 264 6.351371 CCCAGTCTCTCTCTATGCACTTTTTA 60.351 42.308 0.00 0.00 0.00 1.52
264 265 5.486526 CCAGTCTCTCTCTATGCACTTTTT 58.513 41.667 0.00 0.00 0.00 1.94
265 266 4.081198 CCCAGTCTCTCTCTATGCACTTTT 60.081 45.833 0.00 0.00 0.00 2.27
266 267 3.450457 CCCAGTCTCTCTCTATGCACTTT 59.550 47.826 0.00 0.00 0.00 2.66
267 268 3.030291 CCCAGTCTCTCTCTATGCACTT 58.970 50.000 0.00 0.00 0.00 3.16
268 269 2.665165 CCCAGTCTCTCTCTATGCACT 58.335 52.381 0.00 0.00 0.00 4.40
269 270 1.686052 CCCCAGTCTCTCTCTATGCAC 59.314 57.143 0.00 0.00 0.00 4.57
270 271 2.031624 GCCCCAGTCTCTCTCTATGCA 61.032 57.143 0.00 0.00 0.00 3.96
271 272 0.678950 GCCCCAGTCTCTCTCTATGC 59.321 60.000 0.00 0.00 0.00 3.14
272 273 1.133199 AGGCCCCAGTCTCTCTCTATG 60.133 57.143 0.00 0.00 0.00 2.23
273 274 1.240527 AGGCCCCAGTCTCTCTCTAT 58.759 55.000 0.00 0.00 0.00 1.98
274 275 1.011595 AAGGCCCCAGTCTCTCTCTA 58.988 55.000 0.00 0.00 0.00 2.43
275 276 0.118144 AAAGGCCCCAGTCTCTCTCT 59.882 55.000 0.00 0.00 0.00 3.10
276 277 0.539518 GAAAGGCCCCAGTCTCTCTC 59.460 60.000 0.00 0.00 0.00 3.20
277 278 0.912006 GGAAAGGCCCCAGTCTCTCT 60.912 60.000 0.00 0.00 0.00 3.10
278 279 0.912006 AGGAAAGGCCCCAGTCTCTC 60.912 60.000 0.00 0.00 37.37 3.20
284 285 0.976641 GGAAAAAGGAAAGGCCCCAG 59.023 55.000 0.00 0.00 37.37 4.45
285 286 0.266152 TGGAAAAAGGAAAGGCCCCA 59.734 50.000 0.00 0.00 37.37 4.96
368 375 2.032799 TGTTTGGCTTCAGCTGTAAACG 59.967 45.455 14.67 0.11 39.56 3.60
391 909 7.042051 ACACGACAACGAAAAGTACTACTAGTA 60.042 37.037 1.89 1.89 42.66 1.82
393 911 6.138761 ACACGACAACGAAAAGTACTACTAG 58.861 40.000 0.00 0.00 42.66 2.57
395 913 4.925068 ACACGACAACGAAAAGTACTACT 58.075 39.130 0.00 0.00 42.66 2.57
396 914 4.734854 TGACACGACAACGAAAAGTACTAC 59.265 41.667 0.00 0.00 42.66 2.73
433 951 9.069082 ACTAGTGCCACTGATAAATACTAGTAG 57.931 37.037 7.83 0.00 44.24 2.57
434 952 8.991783 ACTAGTGCCACTGATAAATACTAGTA 57.008 34.615 7.83 4.77 44.24 1.82
435 953 7.899648 ACTAGTGCCACTGATAAATACTAGT 57.100 36.000 7.83 0.00 42.45 2.57
436 954 9.069082 AGTACTAGTGCCACTGATAAATACTAG 57.931 37.037 7.83 0.00 40.97 2.57
437 955 8.847196 CAGTACTAGTGCCACTGATAAATACTA 58.153 37.037 16.20 0.00 41.80 1.82
438 956 7.684670 GCAGTACTAGTGCCACTGATAAATACT 60.685 40.741 22.78 4.30 41.80 2.12
439 957 6.421202 GCAGTACTAGTGCCACTGATAAATAC 59.579 42.308 22.78 2.16 41.80 1.89
440 958 6.323996 AGCAGTACTAGTGCCACTGATAAATA 59.676 38.462 22.78 0.00 45.41 1.40
441 959 5.129485 AGCAGTACTAGTGCCACTGATAAAT 59.871 40.000 22.78 5.11 45.41 1.40
442 960 4.466370 AGCAGTACTAGTGCCACTGATAAA 59.534 41.667 22.78 0.00 45.41 1.40
443 961 4.023980 AGCAGTACTAGTGCCACTGATAA 58.976 43.478 22.78 0.00 45.41 1.75
459 977 0.459899 CACGCCTATCCACAGCAGTA 59.540 55.000 0.00 0.00 0.00 2.74
463 981 1.884926 GCTCACGCCTATCCACAGC 60.885 63.158 0.00 0.00 0.00 4.40
477 995 1.248486 ACAGTCAAGTAGCTCGCTCA 58.752 50.000 0.00 0.00 0.00 4.26
515 1036 3.766591 CAGAAGAAGGGAAGAGACTAGCA 59.233 47.826 0.00 0.00 0.00 3.49
516 1037 4.020543 TCAGAAGAAGGGAAGAGACTAGC 58.979 47.826 0.00 0.00 0.00 3.42
520 1041 4.000325 GCTTTCAGAAGAAGGGAAGAGAC 59.000 47.826 0.00 0.00 34.71 3.36
533 1054 5.670485 TCTGTTCTGTACTTGCTTTCAGAA 58.330 37.500 0.00 0.00 42.21 3.02
534 1055 5.069119 TCTCTGTTCTGTACTTGCTTTCAGA 59.931 40.000 0.00 0.00 35.54 3.27
535 1056 5.292765 TCTCTGTTCTGTACTTGCTTTCAG 58.707 41.667 0.00 0.00 0.00 3.02
536 1057 5.276461 TCTCTGTTCTGTACTTGCTTTCA 57.724 39.130 0.00 0.00 0.00 2.69
537 1058 5.333721 GCTTCTCTGTTCTGTACTTGCTTTC 60.334 44.000 0.00 0.00 0.00 2.62
656 1178 1.512926 GGTCAGACGCACAGTTCAAT 58.487 50.000 0.00 0.00 0.00 2.57
1061 1713 1.414181 CGATCTGCCACAGGGTCTTAT 59.586 52.381 0.00 0.00 36.17 1.73
1244 1905 9.728100 ATAAGGGAATCAAAATATGAAGGGAAA 57.272 29.630 0.00 0.00 42.54 3.13
1281 1954 4.644234 ACAGTTGTCAAACCACATGATTCA 59.356 37.500 0.00 0.00 36.94 2.57
1299 1980 2.583868 TGCGACGCGACAACAGTT 60.584 55.556 15.93 0.00 0.00 3.16
1874 2581 0.232303 CGTCGGTGAAGAAACACAGC 59.768 55.000 0.00 0.00 41.88 4.40
1877 2584 2.400399 TGATCGTCGGTGAAGAAACAC 58.600 47.619 0.00 0.00 39.70 3.32
1879 2586 1.390463 GCTGATCGTCGGTGAAGAAAC 59.610 52.381 0.00 0.00 0.00 2.78
1880 2587 1.000394 TGCTGATCGTCGGTGAAGAAA 60.000 47.619 0.00 0.00 0.00 2.52
1885 2592 0.388520 CAAGTGCTGATCGTCGGTGA 60.389 55.000 0.00 0.00 0.00 4.02
1886 2593 0.667487 ACAAGTGCTGATCGTCGGTG 60.667 55.000 0.00 0.00 0.00 4.94
1888 2595 0.667487 ACACAAGTGCTGATCGTCGG 60.667 55.000 0.00 0.00 0.00 4.79
1889 2596 1.139989 AACACAAGTGCTGATCGTCG 58.860 50.000 0.00 0.00 0.00 5.12
1890 2597 3.248602 AGAAAACACAAGTGCTGATCGTC 59.751 43.478 0.00 0.00 0.00 4.20
1892 2599 3.885484 AGAAAACACAAGTGCTGATCG 57.115 42.857 0.00 0.00 0.00 3.69
1920 2663 2.648059 CACAGAAATCACTCCCATCCC 58.352 52.381 0.00 0.00 0.00 3.85
1922 2665 2.681848 CAGCACAGAAATCACTCCCATC 59.318 50.000 0.00 0.00 0.00 3.51
1924 2667 1.883638 GCAGCACAGAAATCACTCCCA 60.884 52.381 0.00 0.00 0.00 4.37
1925 2668 0.807496 GCAGCACAGAAATCACTCCC 59.193 55.000 0.00 0.00 0.00 4.30
2079 2866 7.573096 GCAACAGAATTCGACATTTTAGGAGAA 60.573 37.037 0.00 0.00 0.00 2.87
2147 2951 1.080569 CACTGCGGCATTGAAACCC 60.081 57.895 14.42 0.00 0.00 4.11
2184 2992 3.310652 GGGGGAAGGAGAACGGAG 58.689 66.667 0.00 0.00 0.00 4.63
2202 3010 6.405176 GGAAAATGGCAGTGAGGAATTAGAAG 60.405 42.308 0.00 0.00 0.00 2.85
2214 3022 1.336795 GGAAACCGGAAAATGGCAGTG 60.337 52.381 9.46 0.00 0.00 3.66
2215 3023 0.966179 GGAAACCGGAAAATGGCAGT 59.034 50.000 9.46 0.00 0.00 4.40
2229 3037 4.398319 TCTCTTGGAAATGTCTGGGAAAC 58.602 43.478 0.00 0.00 0.00 2.78
2230 3038 4.722526 TCTCTTGGAAATGTCTGGGAAA 57.277 40.909 0.00 0.00 0.00 3.13
2231 3039 4.722526 TTCTCTTGGAAATGTCTGGGAA 57.277 40.909 0.00 0.00 0.00 3.97
2232 3040 4.722526 TTTCTCTTGGAAATGTCTGGGA 57.277 40.909 0.00 0.00 38.81 4.37
2233 3041 5.477984 TCATTTTCTCTTGGAAATGTCTGGG 59.522 40.000 8.93 0.00 42.63 4.45
2234 3042 6.385033 GTCATTTTCTCTTGGAAATGTCTGG 58.615 40.000 8.93 0.00 42.63 3.86
2235 3043 6.385033 GGTCATTTTCTCTTGGAAATGTCTG 58.615 40.000 8.93 0.00 42.63 3.51
2236 3044 5.478332 GGGTCATTTTCTCTTGGAAATGTCT 59.522 40.000 8.93 0.00 42.63 3.41
2237 3045 5.243730 TGGGTCATTTTCTCTTGGAAATGTC 59.756 40.000 8.93 4.72 42.63 3.06
2238 3046 5.011023 GTGGGTCATTTTCTCTTGGAAATGT 59.989 40.000 8.93 0.00 42.63 2.71
2239 3047 5.010922 TGTGGGTCATTTTCTCTTGGAAATG 59.989 40.000 3.99 3.99 42.63 2.32
2240 3048 5.011023 GTGTGGGTCATTTTCTCTTGGAAAT 59.989 40.000 0.00 0.00 42.63 2.17
2241 3049 4.340950 GTGTGGGTCATTTTCTCTTGGAAA 59.659 41.667 0.00 0.00 41.58 3.13
2250 3058 1.824852 GGATGGGTGTGGGTCATTTTC 59.175 52.381 0.00 0.00 0.00 2.29
2252 3060 1.084018 AGGATGGGTGTGGGTCATTT 58.916 50.000 0.00 0.00 0.00 2.32
2261 3069 1.056660 ACGAGAAACAGGATGGGTGT 58.943 50.000 0.00 0.00 43.62 4.16
2262 3070 2.185004 AACGAGAAACAGGATGGGTG 57.815 50.000 0.00 0.00 43.62 4.61
2283 3091 1.064946 CGAACGCTGGCCAAACAAA 59.935 52.632 7.01 0.00 0.00 2.83
2540 3348 8.603242 TTGATGATGATTGATGAGTGAGTATG 57.397 34.615 0.00 0.00 0.00 2.39
2555 3363 6.820335 TCCAGATAACGTTCTTGATGATGAT 58.180 36.000 2.82 0.00 0.00 2.45
2599 3407 3.857093 CACACACGTCACATCATCGATTA 59.143 43.478 0.00 0.00 0.00 1.75
2635 3446 0.901827 CCAATGGCCACCCCTAAAAC 59.098 55.000 8.16 0.00 0.00 2.43
2638 3449 2.006748 CTCCAATGGCCACCCCTAA 58.993 57.895 8.16 0.00 0.00 2.69
2639 3450 2.689691 GCTCCAATGGCCACCCCTA 61.690 63.158 8.16 0.00 0.00 3.53
2727 3542 0.320771 TGAGCTTGAAGCCGAAGACC 60.321 55.000 14.45 0.00 43.77 3.85
2764 3579 2.429930 CTGTCCGTCTTTGCCCCA 59.570 61.111 0.00 0.00 0.00 4.96
2765 3580 3.056328 GCTGTCCGTCTTTGCCCC 61.056 66.667 0.00 0.00 0.00 5.80
2766 3581 2.281484 TGCTGTCCGTCTTTGCCC 60.281 61.111 0.00 0.00 0.00 5.36
2834 3656 3.924686 CACGTACACAGAATCAGTAACCC 59.075 47.826 0.00 0.00 0.00 4.11
2880 3702 2.741985 TGCAGAACCGTGCCGATG 60.742 61.111 0.00 0.00 43.28 3.84
3021 3843 5.113446 AGTGCATCAGAAATCCAAGATCT 57.887 39.130 0.00 0.00 0.00 2.75
3095 3921 2.434359 CGACGTTTCCTCCCCAGC 60.434 66.667 0.00 0.00 0.00 4.85
3131 3957 1.135972 CGTTCCCGTTTCATCTTGCTG 60.136 52.381 0.00 0.00 0.00 4.41
3164 3990 0.039256 ATTTGTGTGATGTGTGCGCC 60.039 50.000 4.18 0.00 0.00 6.53
3193 4019 7.811482 TTTATACTTTGTGTACCCCTTCCTA 57.189 36.000 0.00 0.00 33.45 2.94
3198 4024 9.457436 CTGTTTATTTATACTTTGTGTACCCCT 57.543 33.333 0.00 0.00 33.45 4.79
3397 4226 9.014297 GCATGTAAAATAGGGTCTAGCATATTT 57.986 33.333 6.11 6.11 30.98 1.40
3440 4269 6.690194 AGAACCAATCTGAATCTTGTATGC 57.310 37.500 0.00 0.00 36.88 3.14
3601 4430 0.670546 AGTGTTTCATGCTCGGACCG 60.671 55.000 7.84 7.84 0.00 4.79
3845 4674 3.493129 GTGTTGATGACAAGCGTTCTACA 59.507 43.478 0.00 0.00 40.65 2.74
3855 4684 0.953727 GCAGGCTGTGTTGATGACAA 59.046 50.000 17.16 0.00 40.65 3.18
3901 4730 5.988310 TCGTAAGTCCTGATTTACTGGAA 57.012 39.130 9.82 0.00 45.65 3.53
3999 4828 1.123861 TGCCAGTTCCTGTCTCAGCT 61.124 55.000 0.00 0.00 0.00 4.24
4038 4867 4.274147 ACACTCACTCGTCCAGATATCTT 58.726 43.478 1.33 0.00 0.00 2.40
4118 4947 1.288419 CGCGTCACAGTGGTGCATTA 61.288 55.000 15.42 0.00 44.87 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.