Multiple sequence alignment - TraesCS7D01G013700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G013700 chr7D 100.000 3640 0 0 1 3640 5832951 5836590 0.000000e+00 6722.0
1 TraesCS7D01G013700 chr7D 83.162 1360 130 46 1421 2710 5980411 5981741 0.000000e+00 1151.0
2 TraesCS7D01G013700 chr7D 82.887 485 53 9 354 813 5977818 5978297 3.380000e-110 409.0
3 TraesCS7D01G013700 chr7D 89.894 188 17 2 7 194 346568635 346568820 1.310000e-59 241.0
4 TraesCS7D01G013700 chr7D 92.308 156 9 1 810 962 5979729 5979884 6.120000e-53 219.0
5 TraesCS7D01G013700 chr7D 91.111 45 2 2 1421 1464 105246679 105246722 3.930000e-05 60.2
6 TraesCS7D01G013700 chr4A 88.601 1623 112 32 1117 2710 734342426 734340848 0.000000e+00 1905.0
7 TraesCS7D01G013700 chr4A 92.602 1230 62 14 1501 2710 736274046 736275266 0.000000e+00 1740.0
8 TraesCS7D01G013700 chr4A 91.392 1185 78 9 1545 2710 734433747 734432568 0.000000e+00 1602.0
9 TraesCS7D01G013700 chr4A 91.137 1196 69 9 1545 2710 734288805 734287617 0.000000e+00 1587.0
10 TraesCS7D01G013700 chr4A 87.401 754 59 15 194 929 736272573 736273308 0.000000e+00 833.0
11 TraesCS7D01G013700 chr4A 88.735 506 40 6 355 856 734343311 734342819 1.450000e-168 603.0
12 TraesCS7D01G013700 chr4A 86.335 483 38 10 356 813 734437563 734437084 5.430000e-138 501.0
13 TraesCS7D01G013700 chr4A 95.851 241 6 1 1022 1258 736273482 736273722 1.590000e-103 387.0
14 TraesCS7D01G013700 chr4A 93.281 253 17 0 1265 1517 736273782 736274034 1.230000e-99 374.0
15 TraesCS7D01G013700 chr4A 94.326 141 8 0 962 1102 734342526 734342386 2.200000e-52 217.0
16 TraesCS7D01G013700 chr4A 93.407 91 3 1 872 962 734342695 734342608 8.200000e-27 132.0
17 TraesCS7D01G013700 chr7A 88.909 1118 92 27 1606 2710 7431516 7432614 0.000000e+00 1349.0
18 TraesCS7D01G013700 chr7A 83.556 225 33 4 1292 1514 7430892 7431114 1.320000e-49 207.0
19 TraesCS7D01G013700 chr7A 85.083 181 25 2 17 196 303435006 303434827 2.230000e-42 183.0
20 TraesCS7D01G013700 chr5A 91.628 860 55 8 2711 3559 283114041 283113188 0.000000e+00 1173.0
21 TraesCS7D01G013700 chr5A 83.871 62 10 0 488 549 593246424 593246363 3.930000e-05 60.2
22 TraesCS7D01G013700 chr7B 92.883 815 42 7 2711 3516 71379739 71378932 0.000000e+00 1170.0
23 TraesCS7D01G013700 chr3B 91.259 858 46 8 2711 3557 766666198 766667037 0.000000e+00 1142.0
24 TraesCS7D01G013700 chr5B 91.294 804 45 6 2711 3507 524769240 524770025 0.000000e+00 1074.0
25 TraesCS7D01G013700 chr5B 94.340 159 8 1 37 195 13710299 13710142 3.630000e-60 243.0
26 TraesCS7D01G013700 chr5B 83.099 71 12 0 479 549 580744022 580743952 8.440000e-07 65.8
27 TraesCS7D01G013700 chr1B 91.045 804 47 6 2711 3507 52615671 52614886 0.000000e+00 1062.0
28 TraesCS7D01G013700 chr1B 80.290 345 46 14 488 812 15720280 15719938 1.310000e-59 241.0
29 TraesCS7D01G013700 chr1B 97.059 34 1 0 1424 1457 354987497 354987530 1.410000e-04 58.4
30 TraesCS7D01G013700 chr1B 96.970 33 1 0 1430 1462 176998148 176998180 5.080000e-04 56.5
31 TraesCS7D01G013700 chr2A 85.414 857 92 18 2711 3557 488465874 488466707 0.000000e+00 859.0
32 TraesCS7D01G013700 chr2A 87.519 649 58 13 2711 3351 507165692 507165059 0.000000e+00 728.0
33 TraesCS7D01G013700 chr2A 91.525 177 15 0 19 195 243527679 243527855 1.010000e-60 244.0
34 TraesCS7D01G013700 chr6D 87.928 613 53 11 2711 3316 146966221 146966819 0.000000e+00 702.0
35 TraesCS7D01G013700 chr6D 89.055 201 17 3 3361 3557 459230847 459230648 1.010000e-60 244.0
36 TraesCS7D01G013700 chr1D 86.736 573 54 13 2711 3274 236080963 236080404 5.160000e-173 617.0
37 TraesCS7D01G013700 chr1D 91.237 388 27 2 3177 3557 26191432 26191045 4.170000e-144 521.0
38 TraesCS7D01G013700 chr1D 90.704 398 28 4 3168 3557 386401415 386401811 4.170000e-144 521.0
39 TraesCS7D01G013700 chr1D 87.645 259 19 6 3299 3553 236061072 236060823 4.600000e-74 289.0
40 TraesCS7D01G013700 chr1D 79.935 309 50 10 512 813 41431557 41431860 2.200000e-52 217.0
41 TraesCS7D01G013700 chr1D 97.059 34 1 0 1424 1457 258091996 258091963 1.410000e-04 58.4
42 TraesCS7D01G013700 chr4D 90.704 398 28 4 3168 3557 417845738 417846134 4.170000e-144 521.0
43 TraesCS7D01G013700 chr3D 90.201 398 30 4 3168 3557 38412041 38412437 9.020000e-141 510.0
44 TraesCS7D01G013700 chr6A 94.413 179 10 0 18 196 83044648 83044470 3.580000e-70 276.0
45 TraesCS7D01G013700 chr6A 92.778 180 13 0 18 197 591379750 591379571 1.000000e-65 261.0
46 TraesCS7D01G013700 chr6A 83.152 184 29 2 17 199 53509291 53509473 2.250000e-37 167.0
47 TraesCS7D01G013700 chr2B 94.413 179 8 2 18 195 5525210 5525387 1.290000e-69 274.0
48 TraesCS7D01G013700 chr2B 80.669 269 48 3 546 811 119802697 119802964 4.760000e-49 206.0
49 TraesCS7D01G013700 chr1A 92.778 180 13 0 18 197 487472495 487472316 1.000000e-65 261.0
50 TraesCS7D01G013700 chr1A 82.051 273 44 2 546 813 266880340 266880068 1.020000e-55 228.0
51 TraesCS7D01G013700 chr5D 83.088 272 38 6 550 813 481161584 481161855 1.310000e-59 241.0
52 TraesCS7D01G013700 chr5D 92.857 42 1 2 1429 1470 297053724 297053763 3.930000e-05 60.2
53 TraesCS7D01G013700 chr3A 84.729 203 30 1 546 747 20410770 20410972 6.160000e-48 202.0
54 TraesCS7D01G013700 chr2D 89.831 59 6 0 1456 1514 605623782 605623840 3.900000e-10 76.8
55 TraesCS7D01G013700 chr4B 92.857 42 1 2 1429 1470 340682993 340683032 3.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G013700 chr7D 5832951 5836590 3639 False 6722.00 6722 100.00000 1 3640 1 chr7D.!!$F1 3639
1 TraesCS7D01G013700 chr7D 5977818 5981741 3923 False 593.00 1151 86.11900 354 2710 3 chr7D.!!$F4 2356
2 TraesCS7D01G013700 chr4A 734287617 734288805 1188 True 1587.00 1587 91.13700 1545 2710 1 chr4A.!!$R1 1165
3 TraesCS7D01G013700 chr4A 734432568 734437563 4995 True 1051.50 1602 88.86350 356 2710 2 chr4A.!!$R3 2354
4 TraesCS7D01G013700 chr4A 736272573 736275266 2693 False 833.50 1740 92.28375 194 2710 4 chr4A.!!$F1 2516
5 TraesCS7D01G013700 chr4A 734340848 734343311 2463 True 714.25 1905 91.26725 355 2710 4 chr4A.!!$R2 2355
6 TraesCS7D01G013700 chr7A 7430892 7432614 1722 False 778.00 1349 86.23250 1292 2710 2 chr7A.!!$F1 1418
7 TraesCS7D01G013700 chr5A 283113188 283114041 853 True 1173.00 1173 91.62800 2711 3559 1 chr5A.!!$R1 848
8 TraesCS7D01G013700 chr7B 71378932 71379739 807 True 1170.00 1170 92.88300 2711 3516 1 chr7B.!!$R1 805
9 TraesCS7D01G013700 chr3B 766666198 766667037 839 False 1142.00 1142 91.25900 2711 3557 1 chr3B.!!$F1 846
10 TraesCS7D01G013700 chr5B 524769240 524770025 785 False 1074.00 1074 91.29400 2711 3507 1 chr5B.!!$F1 796
11 TraesCS7D01G013700 chr1B 52614886 52615671 785 True 1062.00 1062 91.04500 2711 3507 1 chr1B.!!$R2 796
12 TraesCS7D01G013700 chr2A 488465874 488466707 833 False 859.00 859 85.41400 2711 3557 1 chr2A.!!$F2 846
13 TraesCS7D01G013700 chr2A 507165059 507165692 633 True 728.00 728 87.51900 2711 3351 1 chr2A.!!$R1 640
14 TraesCS7D01G013700 chr6D 146966221 146966819 598 False 702.00 702 87.92800 2711 3316 1 chr6D.!!$F1 605
15 TraesCS7D01G013700 chr1D 236080404 236080963 559 True 617.00 617 86.73600 2711 3274 1 chr1D.!!$R3 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.036306 ACAGTTAACTCTTGCCCGGG 59.964 55.0 19.09 19.09 0.00 5.73 F
349 350 0.461163 AAAGGCACAAACCAAACCGC 60.461 50.0 0.00 0.00 0.00 5.68 F
1359 4411 0.109412 ACGTAGCCTCTGTACAACGC 60.109 55.0 13.80 7.69 33.87 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1343 4395 1.254026 ACAGCGTTGTACAGAGGCTA 58.746 50.000 18.27 0.0 36.57 3.93 R
2130 5658 1.347050 TGAACGAACAATTACCCCGGA 59.653 47.619 0.73 0.0 0.00 5.14 R
2842 6413 0.928505 TCCATCACCCATCATTGCCT 59.071 50.000 0.00 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.692257 GCCTATATGGATCAGCACAGT 57.308 47.619 0.00 0.00 38.35 3.55
21 22 3.332919 GCCTATATGGATCAGCACAGTG 58.667 50.000 0.00 0.00 38.35 3.66
22 23 3.867600 GCCTATATGGATCAGCACAGTGG 60.868 52.174 1.84 0.00 38.35 4.00
23 24 2.267174 ATATGGATCAGCACAGTGGC 57.733 50.000 1.84 0.00 0.00 5.01
24 25 0.179076 TATGGATCAGCACAGTGGCG 60.179 55.000 1.84 0.00 39.27 5.69
25 26 2.821366 GGATCAGCACAGTGGCGG 60.821 66.667 1.84 0.00 39.27 6.13
26 27 2.265739 GATCAGCACAGTGGCGGA 59.734 61.111 1.84 8.38 42.01 5.54
27 28 1.812922 GATCAGCACAGTGGCGGAG 60.813 63.158 1.84 1.87 41.15 4.63
66 67 4.537433 CAGCTGCCCGGGCTAGTC 62.537 72.222 43.34 29.40 42.51 2.59
69 70 3.854669 CTGCCCGGGCTAGTCCAG 61.855 72.222 43.34 28.44 42.51 3.86
70 71 4.392166 TGCCCGGGCTAGTCCAGA 62.392 66.667 43.34 20.74 42.51 3.86
71 72 3.081409 GCCCGGGCTAGTCCAGAA 61.081 66.667 38.76 0.00 38.26 3.02
72 73 2.666098 GCCCGGGCTAGTCCAGAAA 61.666 63.158 38.76 0.00 38.26 2.52
73 74 1.984288 GCCCGGGCTAGTCCAGAAAT 61.984 60.000 38.76 0.00 38.26 2.17
74 75 0.546598 CCCGGGCTAGTCCAGAAATT 59.453 55.000 15.12 0.00 36.21 1.82
75 76 1.064685 CCCGGGCTAGTCCAGAAATTT 60.065 52.381 15.12 0.00 36.21 1.82
76 77 2.017049 CCGGGCTAGTCCAGAAATTTG 58.983 52.381 15.12 0.00 36.21 2.32
77 78 1.401905 CGGGCTAGTCCAGAAATTTGC 59.598 52.381 15.12 0.00 36.21 3.68
78 79 2.728007 GGGCTAGTCCAGAAATTTGCT 58.272 47.619 9.01 0.00 36.21 3.91
79 80 2.685388 GGGCTAGTCCAGAAATTTGCTC 59.315 50.000 9.01 0.00 36.21 4.26
80 81 2.685388 GGCTAGTCCAGAAATTTGCTCC 59.315 50.000 0.00 0.00 34.01 4.70
81 82 3.615155 GCTAGTCCAGAAATTTGCTCCT 58.385 45.455 0.00 0.00 0.00 3.69
82 83 4.384208 GGCTAGTCCAGAAATTTGCTCCTA 60.384 45.833 0.00 0.00 34.01 2.94
83 84 5.186198 GCTAGTCCAGAAATTTGCTCCTAA 58.814 41.667 0.00 0.00 0.00 2.69
84 85 5.295540 GCTAGTCCAGAAATTTGCTCCTAAG 59.704 44.000 0.00 0.00 0.00 2.18
85 86 5.248380 AGTCCAGAAATTTGCTCCTAAGT 57.752 39.130 0.00 0.00 0.00 2.24
86 87 5.006386 AGTCCAGAAATTTGCTCCTAAGTG 58.994 41.667 0.00 0.00 0.00 3.16
87 88 3.758554 TCCAGAAATTTGCTCCTAAGTGC 59.241 43.478 0.00 0.00 0.00 4.40
88 89 3.760684 CCAGAAATTTGCTCCTAAGTGCT 59.239 43.478 0.00 0.00 33.59 4.40
89 90 4.943705 CCAGAAATTTGCTCCTAAGTGCTA 59.056 41.667 0.00 0.00 33.59 3.49
90 91 5.065731 CCAGAAATTTGCTCCTAAGTGCTAG 59.934 44.000 0.00 0.00 33.59 3.42
91 92 5.645497 CAGAAATTTGCTCCTAAGTGCTAGT 59.355 40.000 0.00 0.00 33.59 2.57
92 93 5.645497 AGAAATTTGCTCCTAAGTGCTAGTG 59.355 40.000 0.00 0.00 33.59 2.74
93 94 4.559862 ATTTGCTCCTAAGTGCTAGTGT 57.440 40.909 0.00 0.00 33.59 3.55
94 95 4.351874 TTTGCTCCTAAGTGCTAGTGTT 57.648 40.909 0.00 0.00 33.59 3.32
95 96 5.477607 TTTGCTCCTAAGTGCTAGTGTTA 57.522 39.130 0.00 0.00 33.59 2.41
96 97 5.477607 TTGCTCCTAAGTGCTAGTGTTAA 57.522 39.130 0.00 0.00 33.59 2.01
97 98 5.677319 TGCTCCTAAGTGCTAGTGTTAAT 57.323 39.130 0.00 0.00 33.59 1.40
98 99 5.661458 TGCTCCTAAGTGCTAGTGTTAATC 58.339 41.667 0.00 0.00 33.59 1.75
99 100 5.186992 TGCTCCTAAGTGCTAGTGTTAATCA 59.813 40.000 0.00 0.00 33.59 2.57
100 101 6.106673 GCTCCTAAGTGCTAGTGTTAATCAA 58.893 40.000 0.00 0.00 0.00 2.57
101 102 6.763610 GCTCCTAAGTGCTAGTGTTAATCAAT 59.236 38.462 0.00 0.00 0.00 2.57
102 103 7.254590 GCTCCTAAGTGCTAGTGTTAATCAATG 60.255 40.741 0.00 0.00 0.00 2.82
103 104 7.047891 TCCTAAGTGCTAGTGTTAATCAATGG 58.952 38.462 0.00 0.00 0.00 3.16
104 105 6.823689 CCTAAGTGCTAGTGTTAATCAATGGT 59.176 38.462 0.00 0.00 0.00 3.55
105 106 7.336931 CCTAAGTGCTAGTGTTAATCAATGGTT 59.663 37.037 0.00 0.00 0.00 3.67
106 107 9.378551 CTAAGTGCTAGTGTTAATCAATGGTTA 57.621 33.333 0.00 0.00 0.00 2.85
107 108 7.849804 AGTGCTAGTGTTAATCAATGGTTAG 57.150 36.000 0.00 0.00 0.00 2.34
108 109 7.620880 AGTGCTAGTGTTAATCAATGGTTAGA 58.379 34.615 0.00 0.00 0.00 2.10
109 110 8.100791 AGTGCTAGTGTTAATCAATGGTTAGAA 58.899 33.333 0.00 0.00 0.00 2.10
110 111 8.391106 GTGCTAGTGTTAATCAATGGTTAGAAG 58.609 37.037 0.00 0.00 0.00 2.85
111 112 7.065803 TGCTAGTGTTAATCAATGGTTAGAAGC 59.934 37.037 0.00 0.00 0.00 3.86
112 113 7.065803 GCTAGTGTTAATCAATGGTTAGAAGCA 59.934 37.037 0.00 0.00 41.10 3.91
113 114 7.759489 AGTGTTAATCAATGGTTAGAAGCAA 57.241 32.000 0.00 0.00 40.14 3.91
114 115 8.177119 AGTGTTAATCAATGGTTAGAAGCAAA 57.823 30.769 0.00 0.00 40.14 3.68
115 116 8.637986 AGTGTTAATCAATGGTTAGAAGCAAAA 58.362 29.630 0.00 0.00 40.14 2.44
116 117 9.255304 GTGTTAATCAATGGTTAGAAGCAAAAA 57.745 29.630 0.00 0.00 40.14 1.94
134 135 4.751767 AAAAAGTTTTGGACAGATGGCA 57.248 36.364 0.61 0.00 0.00 4.92
135 136 4.326504 AAAAGTTTTGGACAGATGGCAG 57.673 40.909 0.00 0.00 0.00 4.85
136 137 1.251251 AGTTTTGGACAGATGGCAGC 58.749 50.000 0.00 0.00 0.00 5.25
137 138 1.202976 AGTTTTGGACAGATGGCAGCT 60.203 47.619 0.00 0.00 0.00 4.24
138 139 1.200948 GTTTTGGACAGATGGCAGCTC 59.799 52.381 0.27 0.00 0.00 4.09
139 140 0.401356 TTTGGACAGATGGCAGCTCA 59.599 50.000 0.27 0.00 0.00 4.26
140 141 0.321919 TTGGACAGATGGCAGCTCAC 60.322 55.000 0.27 0.00 0.00 3.51
141 142 1.297689 GGACAGATGGCAGCTCACA 59.702 57.895 0.27 0.00 0.00 3.58
142 143 1.023513 GGACAGATGGCAGCTCACAC 61.024 60.000 0.27 0.00 0.00 3.82
143 144 0.036577 GACAGATGGCAGCTCACACT 60.037 55.000 0.27 0.00 0.00 3.55
144 145 0.321387 ACAGATGGCAGCTCACACTG 60.321 55.000 0.27 0.00 40.80 3.66
145 146 0.321387 CAGATGGCAGCTCACACTGT 60.321 55.000 0.27 0.00 39.96 3.55
146 147 0.036577 AGATGGCAGCTCACACTGTC 60.037 55.000 0.00 0.00 42.75 3.51
148 149 1.227645 TGGCAGCTCACACTGTCAC 60.228 57.895 0.00 0.00 46.89 3.67
149 150 1.227645 GGCAGCTCACACTGTCACA 60.228 57.895 0.00 0.00 42.00 3.58
150 151 1.226686 GGCAGCTCACACTGTCACAG 61.227 60.000 2.22 2.22 42.00 3.66
151 152 0.531532 GCAGCTCACACTGTCACAGT 60.532 55.000 3.98 3.98 46.51 3.55
152 153 1.945387 CAGCTCACACTGTCACAGTT 58.055 50.000 8.05 0.00 42.59 3.16
153 154 2.803133 GCAGCTCACACTGTCACAGTTA 60.803 50.000 8.05 0.00 42.59 2.24
154 155 3.457234 CAGCTCACACTGTCACAGTTAA 58.543 45.455 8.05 0.00 42.59 2.01
155 156 3.246226 CAGCTCACACTGTCACAGTTAAC 59.754 47.826 8.05 0.00 42.59 2.01
156 157 3.133003 AGCTCACACTGTCACAGTTAACT 59.867 43.478 8.05 1.12 42.59 2.24
157 158 3.491267 GCTCACACTGTCACAGTTAACTC 59.509 47.826 8.05 0.00 42.59 3.01
158 159 4.737946 GCTCACACTGTCACAGTTAACTCT 60.738 45.833 8.05 0.00 42.59 3.24
159 160 5.339008 TCACACTGTCACAGTTAACTCTT 57.661 39.130 8.05 0.00 42.59 2.85
160 161 5.109210 TCACACTGTCACAGTTAACTCTTG 58.891 41.667 8.05 6.29 42.59 3.02
161 162 3.871594 ACACTGTCACAGTTAACTCTTGC 59.128 43.478 8.05 3.76 42.59 4.01
162 163 3.248602 CACTGTCACAGTTAACTCTTGCC 59.751 47.826 8.05 0.00 42.59 4.52
163 164 2.808543 CTGTCACAGTTAACTCTTGCCC 59.191 50.000 4.77 1.63 0.00 5.36
164 165 1.798813 GTCACAGTTAACTCTTGCCCG 59.201 52.381 4.77 0.00 0.00 6.13
165 166 1.156736 CACAGTTAACTCTTGCCCGG 58.843 55.000 4.77 0.00 0.00 5.73
166 167 0.036306 ACAGTTAACTCTTGCCCGGG 59.964 55.000 19.09 19.09 0.00 5.73
167 168 1.002502 AGTTAACTCTTGCCCGGGC 60.003 57.895 39.40 39.40 42.35 6.13
168 169 1.002502 GTTAACTCTTGCCCGGGCT 60.003 57.895 43.34 26.37 42.51 5.19
169 170 1.002624 TTAACTCTTGCCCGGGCTG 60.003 57.895 43.34 33.91 42.51 4.85
170 171 3.622060 TAACTCTTGCCCGGGCTGC 62.622 63.158 43.34 20.70 42.51 5.25
172 173 4.809496 CTCTTGCCCGGGCTGCAT 62.809 66.667 43.34 0.00 42.51 3.96
173 174 4.365111 TCTTGCCCGGGCTGCATT 62.365 61.111 43.34 0.00 42.51 3.56
174 175 3.830192 CTTGCCCGGGCTGCATTC 61.830 66.667 43.34 16.20 42.51 2.67
175 176 4.675161 TTGCCCGGGCTGCATTCA 62.675 61.111 43.34 21.57 42.51 2.57
182 183 3.818787 GGCTGCATTCACGGGCTG 61.819 66.667 0.50 0.00 38.42 4.85
183 184 3.818787 GCTGCATTCACGGGCTGG 61.819 66.667 0.00 0.00 0.00 4.85
184 185 3.818787 CTGCATTCACGGGCTGGC 61.819 66.667 0.00 0.00 0.00 4.85
185 186 4.349503 TGCATTCACGGGCTGGCT 62.350 61.111 0.00 0.00 0.00 4.75
186 187 3.512516 GCATTCACGGGCTGGCTC 61.513 66.667 0.00 0.00 0.00 4.70
187 188 2.825836 CATTCACGGGCTGGCTCC 60.826 66.667 0.00 0.00 0.00 4.70
205 206 2.352422 GCCACTGGATCAGCACCA 59.648 61.111 0.00 0.00 34.37 4.17
237 238 1.821332 CCCCAGGCTCATTCGCTTC 60.821 63.158 0.00 0.00 0.00 3.86
239 240 1.821332 CCAGGCTCATTCGCTTCCC 60.821 63.158 0.00 0.00 0.00 3.97
251 252 1.369091 CGCTTCCCCAGTTCATTCCG 61.369 60.000 0.00 0.00 0.00 4.30
289 290 3.599704 GCATGGCGGCTGATTCCC 61.600 66.667 11.43 0.00 0.00 3.97
344 345 2.873133 CCGTTAAAGGCACAAACCAA 57.127 45.000 0.00 0.00 0.00 3.67
345 346 3.166489 CCGTTAAAGGCACAAACCAAA 57.834 42.857 0.00 0.00 0.00 3.28
346 347 2.861335 CCGTTAAAGGCACAAACCAAAC 59.139 45.455 0.00 0.00 0.00 2.93
347 348 2.861335 CGTTAAAGGCACAAACCAAACC 59.139 45.455 0.00 0.00 0.00 3.27
348 349 2.861335 GTTAAAGGCACAAACCAAACCG 59.139 45.455 0.00 0.00 0.00 4.44
349 350 0.461163 AAAGGCACAAACCAAACCGC 60.461 50.000 0.00 0.00 0.00 5.68
425 431 2.208132 TTTGAGAAATTAGCGGGCCA 57.792 45.000 4.39 0.00 0.00 5.36
505 527 9.036980 AGCTCTAGGAAAATAGAAAGTAACTCA 57.963 33.333 0.00 0.00 31.51 3.41
599 652 5.935206 TGATAAAGACGTTGCAATTGGACTA 59.065 36.000 0.59 0.00 0.00 2.59
600 653 6.428465 TGATAAAGACGTTGCAATTGGACTAA 59.572 34.615 0.59 0.00 0.00 2.24
607 660 4.662468 TTGCAATTGGACTAAAGCAACA 57.338 36.364 7.72 0.00 37.99 3.33
663 716 7.581011 ATCAATAATGTTTTTGAAAGCGTCC 57.419 32.000 3.40 0.00 35.63 4.79
696 749 3.690460 TCCAAAAAGATGAGAAGCCCTC 58.310 45.455 0.00 0.00 42.30 4.30
747 800 1.408266 CCCTTATTAGTGCAGGCCGTT 60.408 52.381 0.00 0.00 0.00 4.44
760 813 4.039852 TGCAGGCCGTTAGATCACAATATA 59.960 41.667 0.00 0.00 0.00 0.86
761 814 4.389077 GCAGGCCGTTAGATCACAATATAC 59.611 45.833 0.00 0.00 0.00 1.47
766 819 5.279306 GCCGTTAGATCACAATATACTCCCA 60.279 44.000 0.00 0.00 0.00 4.37
790 843 4.326826 TCGCTGAAAGATTTCAACTCCAT 58.673 39.130 9.16 0.00 45.61 3.41
921 3612 2.276201 TGTACCAATCGGATTTGCTCG 58.724 47.619 0.00 0.00 35.59 5.03
1277 4284 6.899393 TTCCTTTGCTATTTCACACAATCT 57.101 33.333 0.00 0.00 0.00 2.40
1296 4348 6.435277 ACAATCTCTGCACAAATAAATCCTGT 59.565 34.615 0.00 0.00 0.00 4.00
1343 4395 1.469251 CCGATCCGAATCAGTTGACGT 60.469 52.381 0.00 0.00 31.76 4.34
1359 4411 0.109412 ACGTAGCCTCTGTACAACGC 60.109 55.000 13.80 7.69 33.87 4.84
1376 4428 5.054477 ACAACGCTGTATTGTACTCACTTT 58.946 37.500 0.00 0.00 38.51 2.66
1395 4447 8.621532 TCACTTTGTCCCATAATATAATCTGC 57.378 34.615 0.00 0.00 0.00 4.26
1428 4573 6.032094 GCTATGTAGTTTTGCGTAGAGTGTA 58.968 40.000 0.00 0.00 32.17 2.90
1676 5163 7.179269 TGCTATAGTTTTGTAATCTTTGGGGT 58.821 34.615 0.84 0.00 0.00 4.95
1698 5186 3.376859 TGCTCCTGGTATGTAAAATTGCG 59.623 43.478 0.00 0.00 0.00 4.85
1815 5304 6.406370 TGTGGAATATTCTAGACCTGTTGTG 58.594 40.000 14.95 0.00 0.00 3.33
1925 5441 2.215942 ACTCCCTGCCCATTACAAAC 57.784 50.000 0.00 0.00 0.00 2.93
1966 5482 9.197306 TCTAGGTTGAACAAGCATAGATTAGTA 57.803 33.333 16.88 0.00 40.96 1.82
1998 5514 3.614092 CTTTCTGCTGCTTCCTTGGATA 58.386 45.455 0.00 0.00 0.00 2.59
2114 5642 6.870971 TGGCTCGTTCTTAAACAGTTTATT 57.129 33.333 6.58 0.00 34.93 1.40
2142 5670 5.907866 AACACTAAATTCCGGGGTAATTG 57.092 39.130 0.00 0.00 0.00 2.32
2154 5682 2.095415 GGGGTAATTGTTCGTTCACTGC 60.095 50.000 0.00 0.00 0.00 4.40
2174 5702 8.028354 TCACTGCTTATTGTTATTTGGAACATG 58.972 33.333 0.00 0.00 39.04 3.21
2186 5715 8.725148 GTTATTTGGAACATGGATCTAGCTATG 58.275 37.037 0.00 0.00 39.30 2.23
2239 5770 5.007724 GGATACAAGTACAAGCATGCCTTAC 59.992 44.000 15.66 12.96 31.00 2.34
2240 5771 3.750371 ACAAGTACAAGCATGCCTTACA 58.250 40.909 15.66 0.00 31.00 2.41
2241 5772 4.141287 ACAAGTACAAGCATGCCTTACAA 58.859 39.130 15.66 0.00 31.00 2.41
2253 5784 4.216411 TGCCTTACAATAAGGAGGTGAC 57.784 45.455 17.11 0.89 39.81 3.67
2261 5792 8.561738 TTACAATAAGGAGGTGACATTTCTTC 57.438 34.615 0.00 0.00 0.00 2.87
2519 6061 5.838521 GGAGAAGGAGAGGTCTGATCTAATT 59.161 44.000 0.00 0.00 0.00 1.40
2622 6167 6.716934 ATAAACTAGCGGAAGAAGATGAGA 57.283 37.500 0.00 0.00 0.00 3.27
2720 6287 1.556911 TGTGAGCTCTCCCAAGGAATC 59.443 52.381 16.19 0.00 0.00 2.52
2755 6325 9.155975 GTCTGTTGTTCACATATTGTAAGATCT 57.844 33.333 0.00 0.00 33.76 2.75
2842 6413 1.668919 GGAAAGCGAGTCACATCACGA 60.669 52.381 0.00 0.00 0.00 4.35
2867 6438 3.715638 ATGATGGGTGATGGATGCTAG 57.284 47.619 0.00 0.00 0.00 3.42
2909 6481 7.019656 AGGAAGGAAAATTAATGGCAAACAT 57.980 32.000 0.00 0.00 43.07 2.71
2910 6482 8.144862 AGGAAGGAAAATTAATGGCAAACATA 57.855 30.769 0.00 0.00 39.40 2.29
2977 6549 7.041440 TGTGTGTTGGTCTACATCTGTTAAATG 60.041 37.037 0.00 0.00 0.00 2.32
3188 6764 5.048083 ACAATTGATACGGTGACAAGCATTT 60.048 36.000 13.59 0.00 0.00 2.32
3203 6782 4.712051 AGCATTTAGTCTCATGCCCATA 57.288 40.909 11.62 0.00 45.99 2.74
3239 6818 8.956533 TTCTTTTCGTATGTGGATGATGATTA 57.043 30.769 0.00 0.00 0.00 1.75
3278 6857 7.238486 ACATTAAGCCTACCTAGAGATGATG 57.762 40.000 0.00 0.00 0.00 3.07
3342 6922 7.984391 TGCATGTAGTGTTTAGAATTGTATGG 58.016 34.615 0.00 0.00 0.00 2.74
3475 7073 4.024556 GTCATGAAGAAATCCCATGTAGCG 60.025 45.833 0.00 0.00 38.88 4.26
3481 7079 0.179045 AATCCCATGTAGCGGCAGAC 60.179 55.000 1.45 0.00 0.00 3.51
3500 7098 4.919168 CAGACATTGTCGTGCAAAATTCAT 59.081 37.500 11.01 0.00 40.91 2.57
3542 7144 1.001815 CACGCGGACATTCAAAAAGGT 60.002 47.619 12.47 0.00 30.73 3.50
3559 7161 6.402456 AAAAGGTACTACTCTTCGACAACT 57.598 37.500 0.00 0.00 38.49 3.16
3560 7162 5.373981 AAGGTACTACTCTTCGACAACTG 57.626 43.478 0.00 0.00 38.49 3.16
3561 7163 4.396522 AGGTACTACTCTTCGACAACTGT 58.603 43.478 0.00 0.00 36.02 3.55
3562 7164 4.826183 AGGTACTACTCTTCGACAACTGTT 59.174 41.667 0.00 0.00 36.02 3.16
3563 7165 5.048852 AGGTACTACTCTTCGACAACTGTTC 60.049 44.000 0.00 0.00 36.02 3.18
3564 7166 4.913335 ACTACTCTTCGACAACTGTTCA 57.087 40.909 0.00 0.00 0.00 3.18
3565 7167 5.258456 ACTACTCTTCGACAACTGTTCAA 57.742 39.130 0.00 0.00 0.00 2.69
3566 7168 5.041940 ACTACTCTTCGACAACTGTTCAAC 58.958 41.667 0.00 0.00 0.00 3.18
3567 7169 3.857052 ACTCTTCGACAACTGTTCAACA 58.143 40.909 0.00 0.00 0.00 3.33
3568 7170 4.250464 ACTCTTCGACAACTGTTCAACAA 58.750 39.130 0.00 0.00 0.00 2.83
3569 7171 4.092968 ACTCTTCGACAACTGTTCAACAAC 59.907 41.667 0.00 0.00 0.00 3.32
3570 7172 4.250464 TCTTCGACAACTGTTCAACAACT 58.750 39.130 0.00 0.00 33.17 3.16
3571 7173 4.328983 TCTTCGACAACTGTTCAACAACTC 59.671 41.667 0.00 0.00 33.17 3.01
3572 7174 2.933906 TCGACAACTGTTCAACAACTCC 59.066 45.455 0.00 0.00 33.17 3.85
3573 7175 2.936498 CGACAACTGTTCAACAACTCCT 59.064 45.455 0.00 0.00 33.17 3.69
3574 7176 4.116961 CGACAACTGTTCAACAACTCCTA 58.883 43.478 0.00 0.00 33.17 2.94
3575 7177 4.209288 CGACAACTGTTCAACAACTCCTAG 59.791 45.833 0.00 0.00 33.17 3.02
3576 7178 4.451900 ACAACTGTTCAACAACTCCTAGG 58.548 43.478 0.82 0.82 33.17 3.02
3577 7179 3.127425 ACTGTTCAACAACTCCTAGGC 57.873 47.619 2.96 0.00 33.17 3.93
3578 7180 2.438021 ACTGTTCAACAACTCCTAGGCA 59.562 45.455 2.96 0.00 33.17 4.75
3579 7181 3.073062 ACTGTTCAACAACTCCTAGGCAT 59.927 43.478 2.96 0.00 33.17 4.40
3580 7182 3.674997 TGTTCAACAACTCCTAGGCATC 58.325 45.455 2.96 0.00 33.17 3.91
3581 7183 2.672961 TCAACAACTCCTAGGCATCG 57.327 50.000 2.96 0.00 0.00 3.84
3582 7184 2.176045 TCAACAACTCCTAGGCATCGA 58.824 47.619 2.96 0.00 0.00 3.59
3583 7185 2.766263 TCAACAACTCCTAGGCATCGAT 59.234 45.455 2.96 0.00 0.00 3.59
3584 7186 2.868583 CAACAACTCCTAGGCATCGATG 59.131 50.000 21.27 21.27 0.00 3.84
3585 7187 2.388735 ACAACTCCTAGGCATCGATGA 58.611 47.619 29.20 7.36 0.00 2.92
3586 7188 2.766263 ACAACTCCTAGGCATCGATGAA 59.234 45.455 29.20 11.94 0.00 2.57
3587 7189 3.389329 ACAACTCCTAGGCATCGATGAAT 59.611 43.478 29.20 17.49 0.00 2.57
3588 7190 4.141620 ACAACTCCTAGGCATCGATGAATT 60.142 41.667 29.20 14.64 0.00 2.17
3589 7191 4.264460 ACTCCTAGGCATCGATGAATTC 57.736 45.455 29.20 13.78 0.00 2.17
3590 7192 3.007398 ACTCCTAGGCATCGATGAATTCC 59.993 47.826 29.20 19.16 0.00 3.01
3591 7193 2.972021 TCCTAGGCATCGATGAATTCCA 59.028 45.455 29.20 9.84 0.00 3.53
3592 7194 3.390967 TCCTAGGCATCGATGAATTCCAA 59.609 43.478 29.20 5.20 0.00 3.53
3593 7195 4.136796 CCTAGGCATCGATGAATTCCAAA 58.863 43.478 29.20 11.12 0.00 3.28
3594 7196 4.023707 CCTAGGCATCGATGAATTCCAAAC 60.024 45.833 29.20 7.42 0.00 2.93
3595 7197 2.355756 AGGCATCGATGAATTCCAAACG 59.644 45.455 29.20 3.95 0.00 3.60
3596 7198 2.097466 GGCATCGATGAATTCCAAACGT 59.903 45.455 29.20 0.00 33.07 3.99
3597 7199 3.427503 GGCATCGATGAATTCCAAACGTT 60.428 43.478 29.20 0.00 33.07 3.99
3598 7200 4.165779 GCATCGATGAATTCCAAACGTTT 58.834 39.130 29.20 7.96 33.07 3.60
3599 7201 5.328691 GCATCGATGAATTCCAAACGTTTA 58.671 37.500 29.20 0.00 33.07 2.01
3600 7202 5.227184 GCATCGATGAATTCCAAACGTTTAC 59.773 40.000 29.20 0.84 33.07 2.01
3601 7203 5.926214 TCGATGAATTCCAAACGTTTACA 57.074 34.783 14.20 7.73 33.07 2.41
3602 7204 5.922546 TCGATGAATTCCAAACGTTTACAG 58.077 37.500 14.20 5.90 33.07 2.74
3603 7205 4.553429 CGATGAATTCCAAACGTTTACAGC 59.447 41.667 14.20 8.89 0.00 4.40
3604 7206 3.879427 TGAATTCCAAACGTTTACAGCG 58.121 40.909 14.20 0.44 0.00 5.18
3605 7207 2.981400 ATTCCAAACGTTTACAGCGG 57.019 45.000 14.20 10.51 0.00 5.52
3606 7208 1.950828 TTCCAAACGTTTACAGCGGA 58.049 45.000 14.20 12.79 0.00 5.54
3607 7209 1.504359 TCCAAACGTTTACAGCGGAG 58.496 50.000 14.20 0.00 0.00 4.63
3608 7210 0.515564 CCAAACGTTTACAGCGGAGG 59.484 55.000 14.20 4.27 0.00 4.30
3609 7211 1.504359 CAAACGTTTACAGCGGAGGA 58.496 50.000 14.20 0.00 0.00 3.71
3610 7212 1.868498 CAAACGTTTACAGCGGAGGAA 59.132 47.619 14.20 0.00 0.00 3.36
3611 7213 2.467566 AACGTTTACAGCGGAGGAAT 57.532 45.000 0.00 0.00 0.00 3.01
3612 7214 2.467566 ACGTTTACAGCGGAGGAATT 57.532 45.000 0.00 0.00 0.00 2.17
3613 7215 3.598019 ACGTTTACAGCGGAGGAATTA 57.402 42.857 0.00 0.00 0.00 1.40
3614 7216 3.929094 ACGTTTACAGCGGAGGAATTAA 58.071 40.909 0.00 0.00 0.00 1.40
3615 7217 3.930848 ACGTTTACAGCGGAGGAATTAAG 59.069 43.478 0.00 0.00 0.00 1.85
3616 7218 4.178540 CGTTTACAGCGGAGGAATTAAGA 58.821 43.478 0.00 0.00 0.00 2.10
3617 7219 4.809426 CGTTTACAGCGGAGGAATTAAGAT 59.191 41.667 0.00 0.00 0.00 2.40
3618 7220 5.981315 CGTTTACAGCGGAGGAATTAAGATA 59.019 40.000 0.00 0.00 0.00 1.98
3619 7221 6.144080 CGTTTACAGCGGAGGAATTAAGATAG 59.856 42.308 0.00 0.00 0.00 2.08
3620 7222 6.971726 TTACAGCGGAGGAATTAAGATAGA 57.028 37.500 0.00 0.00 0.00 1.98
3621 7223 7.540474 TTACAGCGGAGGAATTAAGATAGAT 57.460 36.000 0.00 0.00 0.00 1.98
3622 7224 6.031751 ACAGCGGAGGAATTAAGATAGATC 57.968 41.667 0.00 0.00 0.00 2.75
3623 7225 5.046950 ACAGCGGAGGAATTAAGATAGATCC 60.047 44.000 0.00 0.00 0.00 3.36
3624 7226 4.468153 AGCGGAGGAATTAAGATAGATCCC 59.532 45.833 0.00 0.00 0.00 3.85
3625 7227 4.678309 GCGGAGGAATTAAGATAGATCCCG 60.678 50.000 0.00 0.00 0.00 5.14
3626 7228 4.678309 CGGAGGAATTAAGATAGATCCCGC 60.678 50.000 0.00 0.00 0.00 6.13
3627 7229 4.468153 GGAGGAATTAAGATAGATCCCGCT 59.532 45.833 0.00 0.00 0.00 5.52
3628 7230 5.046231 GGAGGAATTAAGATAGATCCCGCTT 60.046 44.000 0.00 0.00 0.00 4.68
3629 7231 6.043854 AGGAATTAAGATAGATCCCGCTTC 57.956 41.667 0.00 0.00 0.00 3.86
3630 7232 5.046231 AGGAATTAAGATAGATCCCGCTTCC 60.046 44.000 0.00 0.00 0.00 3.46
3631 7233 5.046231 GGAATTAAGATAGATCCCGCTTCCT 60.046 44.000 0.00 0.00 0.00 3.36
3632 7234 5.669164 ATTAAGATAGATCCCGCTTCCTC 57.331 43.478 0.00 0.00 0.00 3.71
3633 7235 2.990740 AGATAGATCCCGCTTCCTCT 57.009 50.000 0.00 0.00 0.00 3.69
3634 7236 2.524306 AGATAGATCCCGCTTCCTCTG 58.476 52.381 0.00 0.00 0.00 3.35
3635 7237 1.548269 GATAGATCCCGCTTCCTCTGG 59.452 57.143 0.00 0.00 0.00 3.86
3636 7238 0.261991 TAGATCCCGCTTCCTCTGGT 59.738 55.000 0.00 0.00 0.00 4.00
3637 7239 1.045911 AGATCCCGCTTCCTCTGGTC 61.046 60.000 0.00 0.00 0.00 4.02
3638 7240 1.306141 ATCCCGCTTCCTCTGGTCA 60.306 57.895 0.00 0.00 0.00 4.02
3639 7241 0.909610 ATCCCGCTTCCTCTGGTCAA 60.910 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.332919 CACTGTGCTGATCCATATAGGC 58.667 50.000 0.00 0.00 37.29 3.93
3 4 2.289010 CGCCACTGTGCTGATCCATATA 60.289 50.000 1.29 0.00 0.00 0.86
5 6 0.179076 CGCCACTGTGCTGATCCATA 60.179 55.000 1.29 0.00 0.00 2.74
6 7 1.450848 CGCCACTGTGCTGATCCAT 60.451 57.895 1.29 0.00 0.00 3.41
7 8 2.046988 CGCCACTGTGCTGATCCA 60.047 61.111 1.29 0.00 0.00 3.41
8 9 2.821366 CCGCCACTGTGCTGATCC 60.821 66.667 1.29 0.00 0.00 3.36
9 10 1.812922 CTCCGCCACTGTGCTGATC 60.813 63.158 1.29 0.00 0.00 2.92
10 11 2.267006 CTCCGCCACTGTGCTGAT 59.733 61.111 1.29 0.00 0.00 2.90
11 12 4.687215 GCTCCGCCACTGTGCTGA 62.687 66.667 1.29 0.00 0.00 4.26
49 50 4.537433 GACTAGCCCGGGCAGCTG 62.537 72.222 45.13 31.23 44.88 4.24
52 53 3.854669 CTGGACTAGCCCGGGCAG 61.855 72.222 45.13 37.08 44.88 4.85
53 54 3.916438 TTCTGGACTAGCCCGGGCA 62.916 63.158 45.13 29.46 44.88 5.36
54 55 1.984288 ATTTCTGGACTAGCCCGGGC 61.984 60.000 39.29 39.29 42.33 6.13
55 56 0.546598 AATTTCTGGACTAGCCCGGG 59.453 55.000 19.09 19.09 34.97 5.73
56 57 2.017049 CAAATTTCTGGACTAGCCCGG 58.983 52.381 0.00 0.00 34.97 5.73
57 58 1.401905 GCAAATTTCTGGACTAGCCCG 59.598 52.381 0.00 0.00 34.97 6.13
58 59 2.685388 GAGCAAATTTCTGGACTAGCCC 59.315 50.000 0.00 0.00 34.97 5.19
59 60 2.685388 GGAGCAAATTTCTGGACTAGCC 59.315 50.000 0.00 0.00 37.10 3.93
60 61 3.615155 AGGAGCAAATTTCTGGACTAGC 58.385 45.455 0.00 0.00 0.00 3.42
61 62 6.314896 CACTTAGGAGCAAATTTCTGGACTAG 59.685 42.308 0.00 0.00 0.00 2.57
62 63 6.173339 CACTTAGGAGCAAATTTCTGGACTA 58.827 40.000 0.00 0.00 0.00 2.59
63 64 5.006386 CACTTAGGAGCAAATTTCTGGACT 58.994 41.667 0.00 0.00 0.00 3.85
64 65 4.379918 GCACTTAGGAGCAAATTTCTGGAC 60.380 45.833 0.00 0.00 0.00 4.02
65 66 3.758554 GCACTTAGGAGCAAATTTCTGGA 59.241 43.478 0.00 0.00 0.00 3.86
66 67 3.760684 AGCACTTAGGAGCAAATTTCTGG 59.239 43.478 0.00 0.00 0.00 3.86
67 68 5.645497 ACTAGCACTTAGGAGCAAATTTCTG 59.355 40.000 0.00 0.00 33.42 3.02
68 69 5.645497 CACTAGCACTTAGGAGCAAATTTCT 59.355 40.000 0.00 0.00 33.42 2.52
69 70 5.412904 ACACTAGCACTTAGGAGCAAATTTC 59.587 40.000 0.00 0.00 33.42 2.17
70 71 5.316987 ACACTAGCACTTAGGAGCAAATTT 58.683 37.500 0.00 0.00 33.42 1.82
71 72 4.911390 ACACTAGCACTTAGGAGCAAATT 58.089 39.130 0.00 0.00 33.42 1.82
72 73 4.559862 ACACTAGCACTTAGGAGCAAAT 57.440 40.909 0.00 0.00 33.42 2.32
73 74 4.351874 AACACTAGCACTTAGGAGCAAA 57.648 40.909 0.00 0.00 33.42 3.68
74 75 5.477607 TTAACACTAGCACTTAGGAGCAA 57.522 39.130 0.00 0.00 33.42 3.91
75 76 5.186992 TGATTAACACTAGCACTTAGGAGCA 59.813 40.000 0.00 0.00 33.42 4.26
76 77 5.661458 TGATTAACACTAGCACTTAGGAGC 58.339 41.667 0.00 0.00 33.42 4.70
77 78 7.225538 CCATTGATTAACACTAGCACTTAGGAG 59.774 40.741 0.00 0.00 33.42 3.69
78 79 7.047891 CCATTGATTAACACTAGCACTTAGGA 58.952 38.462 0.00 0.00 33.42 2.94
79 80 6.823689 ACCATTGATTAACACTAGCACTTAGG 59.176 38.462 0.00 0.00 33.42 2.69
80 81 7.849804 ACCATTGATTAACACTAGCACTTAG 57.150 36.000 0.00 0.00 35.39 2.18
81 82 9.378551 CTAACCATTGATTAACACTAGCACTTA 57.621 33.333 0.00 0.00 0.00 2.24
82 83 8.100791 TCTAACCATTGATTAACACTAGCACTT 58.899 33.333 0.00 0.00 0.00 3.16
83 84 7.620880 TCTAACCATTGATTAACACTAGCACT 58.379 34.615 0.00 0.00 0.00 4.40
84 85 7.843490 TCTAACCATTGATTAACACTAGCAC 57.157 36.000 0.00 0.00 0.00 4.40
85 86 7.065803 GCTTCTAACCATTGATTAACACTAGCA 59.934 37.037 0.00 0.00 0.00 3.49
86 87 7.065803 TGCTTCTAACCATTGATTAACACTAGC 59.934 37.037 0.00 0.00 0.00 3.42
87 88 8.492673 TGCTTCTAACCATTGATTAACACTAG 57.507 34.615 0.00 0.00 0.00 2.57
88 89 8.856153 TTGCTTCTAACCATTGATTAACACTA 57.144 30.769 0.00 0.00 0.00 2.74
89 90 7.759489 TTGCTTCTAACCATTGATTAACACT 57.241 32.000 0.00 0.00 0.00 3.55
90 91 8.810652 TTTTGCTTCTAACCATTGATTAACAC 57.189 30.769 0.00 0.00 0.00 3.32
113 114 4.696455 CTGCCATCTGTCCAAAACTTTTT 58.304 39.130 0.00 0.00 0.00 1.94
114 115 3.493176 GCTGCCATCTGTCCAAAACTTTT 60.493 43.478 0.00 0.00 0.00 2.27
115 116 2.036346 GCTGCCATCTGTCCAAAACTTT 59.964 45.455 0.00 0.00 0.00 2.66
116 117 1.615392 GCTGCCATCTGTCCAAAACTT 59.385 47.619 0.00 0.00 0.00 2.66
117 118 1.202976 AGCTGCCATCTGTCCAAAACT 60.203 47.619 0.00 0.00 0.00 2.66
118 119 1.200948 GAGCTGCCATCTGTCCAAAAC 59.799 52.381 0.00 0.00 0.00 2.43
119 120 1.202915 TGAGCTGCCATCTGTCCAAAA 60.203 47.619 0.00 0.00 0.00 2.44
120 121 0.401356 TGAGCTGCCATCTGTCCAAA 59.599 50.000 0.00 0.00 0.00 3.28
121 122 0.321919 GTGAGCTGCCATCTGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
122 123 1.297689 GTGAGCTGCCATCTGTCCA 59.702 57.895 0.00 0.00 0.00 4.02
123 124 1.023513 GTGTGAGCTGCCATCTGTCC 61.024 60.000 0.00 0.00 0.00 4.02
124 125 0.036577 AGTGTGAGCTGCCATCTGTC 60.037 55.000 0.00 0.00 0.00 3.51
125 126 0.321387 CAGTGTGAGCTGCCATCTGT 60.321 55.000 0.00 0.00 0.00 3.41
126 127 0.321387 ACAGTGTGAGCTGCCATCTG 60.321 55.000 0.00 16.17 39.96 2.90
127 128 0.036577 GACAGTGTGAGCTGCCATCT 60.037 55.000 0.00 0.00 39.96 2.90
128 129 0.321034 TGACAGTGTGAGCTGCCATC 60.321 55.000 0.00 0.00 39.96 3.51
129 130 0.604780 GTGACAGTGTGAGCTGCCAT 60.605 55.000 0.00 0.00 39.96 4.40
130 131 1.227645 GTGACAGTGTGAGCTGCCA 60.228 57.895 0.00 0.00 39.96 4.92
131 132 1.226686 CTGTGACAGTGTGAGCTGCC 61.227 60.000 0.00 0.00 39.96 4.85
132 133 0.531532 ACTGTGACAGTGTGAGCTGC 60.532 55.000 18.72 0.00 43.63 5.25
133 134 1.945387 AACTGTGACAGTGTGAGCTG 58.055 50.000 20.19 0.00 44.62 4.24
134 135 3.133003 AGTTAACTGTGACAGTGTGAGCT 59.867 43.478 20.19 11.83 44.62 4.09
135 136 3.458189 AGTTAACTGTGACAGTGTGAGC 58.542 45.455 20.19 9.78 44.62 4.26
136 137 4.938080 AGAGTTAACTGTGACAGTGTGAG 58.062 43.478 20.19 0.00 44.62 3.51
137 138 5.109210 CAAGAGTTAACTGTGACAGTGTGA 58.891 41.667 20.19 5.06 44.62 3.58
138 139 4.260375 GCAAGAGTTAACTGTGACAGTGTG 60.260 45.833 20.19 9.66 44.62 3.82
139 140 3.871594 GCAAGAGTTAACTGTGACAGTGT 59.128 43.478 20.19 11.69 44.62 3.55
140 141 3.248602 GGCAAGAGTTAACTGTGACAGTG 59.751 47.826 20.19 5.11 44.62 3.66
142 143 2.808543 GGGCAAGAGTTAACTGTGACAG 59.191 50.000 14.14 11.70 37.52 3.51
143 144 2.805295 CGGGCAAGAGTTAACTGTGACA 60.805 50.000 14.14 0.00 0.00 3.58
144 145 1.798813 CGGGCAAGAGTTAACTGTGAC 59.201 52.381 14.14 12.68 0.00 3.67
145 146 1.270625 CCGGGCAAGAGTTAACTGTGA 60.271 52.381 14.14 0.00 0.00 3.58
146 147 1.156736 CCGGGCAAGAGTTAACTGTG 58.843 55.000 14.14 11.80 0.00 3.66
147 148 0.036306 CCCGGGCAAGAGTTAACTGT 59.964 55.000 14.14 6.06 0.00 3.55
148 149 1.305930 GCCCGGGCAAGAGTTAACTG 61.306 60.000 40.73 0.40 41.49 3.16
149 150 1.002502 GCCCGGGCAAGAGTTAACT 60.003 57.895 40.73 8.13 41.49 2.24
150 151 1.002502 AGCCCGGGCAAGAGTTAAC 60.003 57.895 45.13 14.03 44.88 2.01
151 152 1.002624 CAGCCCGGGCAAGAGTTAA 60.003 57.895 45.13 0.00 44.88 2.01
152 153 2.668632 CAGCCCGGGCAAGAGTTA 59.331 61.111 45.13 0.00 44.88 2.24
155 156 4.809496 ATGCAGCCCGGGCAAGAG 62.809 66.667 45.13 30.97 45.60 2.85
156 157 4.365111 AATGCAGCCCGGGCAAGA 62.365 61.111 45.13 28.52 45.60 3.02
157 158 3.830192 GAATGCAGCCCGGGCAAG 61.830 66.667 45.13 35.95 45.60 4.01
158 159 4.675161 TGAATGCAGCCCGGGCAA 62.675 61.111 45.13 30.67 45.60 4.52
165 166 3.818787 CAGCCCGTGAATGCAGCC 61.819 66.667 0.00 0.00 0.00 4.85
166 167 3.818787 CCAGCCCGTGAATGCAGC 61.819 66.667 0.00 0.00 0.00 5.25
167 168 3.818787 GCCAGCCCGTGAATGCAG 61.819 66.667 0.00 0.00 0.00 4.41
168 169 4.349503 AGCCAGCCCGTGAATGCA 62.350 61.111 0.00 0.00 0.00 3.96
169 170 3.512516 GAGCCAGCCCGTGAATGC 61.513 66.667 0.00 0.00 0.00 3.56
170 171 2.825836 GGAGCCAGCCCGTGAATG 60.826 66.667 0.00 0.00 0.00 2.67
171 172 4.473520 CGGAGCCAGCCCGTGAAT 62.474 66.667 10.29 0.00 41.91 2.57
184 185 2.202987 GCTGATCCAGTGGCGGAG 60.203 66.667 3.51 0.37 38.83 4.63
185 186 3.002583 TGCTGATCCAGTGGCGGA 61.003 61.111 3.51 0.00 40.07 5.54
186 187 2.821366 GTGCTGATCCAGTGGCGG 60.821 66.667 3.51 0.00 33.43 6.13
187 188 2.821366 GGTGCTGATCCAGTGGCG 60.821 66.667 3.51 0.00 33.43 5.69
188 189 0.682209 ATTGGTGCTGATCCAGTGGC 60.682 55.000 3.51 0.00 36.28 5.01
189 190 1.843368 AATTGGTGCTGATCCAGTGG 58.157 50.000 1.40 1.40 36.28 4.00
190 191 5.345702 CAATAAATTGGTGCTGATCCAGTG 58.654 41.667 0.00 0.00 36.28 3.66
191 192 5.587388 CAATAAATTGGTGCTGATCCAGT 57.413 39.130 0.00 0.00 36.28 4.00
205 206 2.962859 CCTGGGGCTAGCCAATAAATT 58.037 47.619 34.09 0.00 37.98 1.82
223 224 2.262774 CTGGGGAAGCGAATGAGCCT 62.263 60.000 0.00 0.00 38.01 4.58
237 238 2.046314 ACGCGGAATGAACTGGGG 60.046 61.111 12.47 0.00 34.16 4.96
239 240 0.953471 TTGGACGCGGAATGAACTGG 60.953 55.000 12.47 0.00 0.00 4.00
336 337 0.106116 TTAGGGGCGGTTTGGTTTGT 60.106 50.000 0.00 0.00 0.00 2.83
337 338 0.315886 GTTAGGGGCGGTTTGGTTTG 59.684 55.000 0.00 0.00 0.00 2.93
338 339 0.186630 AGTTAGGGGCGGTTTGGTTT 59.813 50.000 0.00 0.00 0.00 3.27
339 340 0.538746 CAGTTAGGGGCGGTTTGGTT 60.539 55.000 0.00 0.00 0.00 3.67
340 341 1.074248 CAGTTAGGGGCGGTTTGGT 59.926 57.895 0.00 0.00 0.00 3.67
341 342 2.340328 GCAGTTAGGGGCGGTTTGG 61.340 63.158 0.00 0.00 0.00 3.28
342 343 0.893727 AAGCAGTTAGGGGCGGTTTG 60.894 55.000 0.00 0.00 34.54 2.93
343 344 0.893727 CAAGCAGTTAGGGGCGGTTT 60.894 55.000 0.00 0.00 34.54 3.27
344 345 1.303317 CAAGCAGTTAGGGGCGGTT 60.303 57.895 0.00 0.00 34.54 4.44
345 346 1.774894 TTCAAGCAGTTAGGGGCGGT 61.775 55.000 0.00 0.00 34.54 5.68
346 347 1.002624 TTCAAGCAGTTAGGGGCGG 60.003 57.895 0.00 0.00 34.54 6.13
347 348 1.026718 CCTTCAAGCAGTTAGGGGCG 61.027 60.000 0.00 0.00 34.54 6.13
348 349 0.328258 TCCTTCAAGCAGTTAGGGGC 59.672 55.000 0.00 0.00 0.00 5.80
349 350 1.630878 ACTCCTTCAAGCAGTTAGGGG 59.369 52.381 0.00 0.00 34.31 4.79
461 475 8.301002 CCTAGAGCTTAGGATGTAGTAATTGTC 58.699 40.741 13.67 0.00 36.85 3.18
468 482 7.922699 ATTTTCCTAGAGCTTAGGATGTAGT 57.077 36.000 19.17 7.75 42.74 2.73
470 484 9.656323 TTCTATTTTCCTAGAGCTTAGGATGTA 57.344 33.333 19.17 13.33 42.74 2.29
532 554 5.197451 TCTAGCAAAGAAGGTGTTTCCAAA 58.803 37.500 0.00 0.00 39.02 3.28
577 630 6.811253 TTAGTCCAATTGCAACGTCTTTAT 57.189 33.333 0.00 0.00 0.00 1.40
661 714 3.874383 TTTTGGATGGACAACTCAGGA 57.126 42.857 0.00 0.00 0.00 3.86
663 716 5.474532 TCATCTTTTTGGATGGACAACTCAG 59.525 40.000 4.91 0.00 42.22 3.35
696 749 2.414559 GGTCCAAGCACGTTCATTGATG 60.415 50.000 5.87 0.00 0.00 3.07
700 753 1.234615 CCGGTCCAAGCACGTTCATT 61.235 55.000 0.00 0.00 0.00 2.57
747 800 6.437477 AGCGATTGGGAGTATATTGTGATCTA 59.563 38.462 0.00 0.00 0.00 1.98
760 813 3.356529 AATCTTTCAGCGATTGGGAGT 57.643 42.857 0.00 0.00 30.37 3.85
761 814 3.691118 TGAAATCTTTCAGCGATTGGGAG 59.309 43.478 1.28 0.00 41.88 4.30
1277 4284 4.826733 ACACACAGGATTTATTTGTGCAGA 59.173 37.500 3.94 0.00 44.54 4.26
1296 4348 8.768397 AGGGAGTAGTTTCAATATCAATACACA 58.232 33.333 0.00 0.00 0.00 3.72
1343 4395 1.254026 ACAGCGTTGTACAGAGGCTA 58.746 50.000 18.27 0.00 36.57 3.93
1359 4411 5.547465 TGGGACAAAGTGAGTACAATACAG 58.453 41.667 0.00 0.00 31.92 2.74
1395 4447 7.075741 ACGCAAAACTACATAGCTTGTAAAAG 58.924 34.615 0.00 0.00 40.27 2.27
1428 4573 6.270000 TCCCTCTGATCCATATTAATTGACGT 59.730 38.462 0.00 0.00 0.00 4.34
1485 4631 2.750657 GCCCAGCCATCTACTGCCT 61.751 63.158 0.00 0.00 33.65 4.75
1676 5163 3.376859 CGCAATTTTACATACCAGGAGCA 59.623 43.478 0.00 0.00 0.00 4.26
1815 5304 4.306600 CTGGCCTTTAAATGTGGTTTGAC 58.693 43.478 3.32 0.00 0.00 3.18
1891 5407 5.763698 GGCAGGGAGTAAAGATATTTGTACC 59.236 44.000 0.00 0.00 0.00 3.34
1925 5441 6.283694 TCAACCTAGATGCTTTATGCTACAG 58.716 40.000 0.00 0.00 43.37 2.74
1966 5482 2.564504 GCAGCAGAAAGGGGAAGATTTT 59.435 45.455 0.00 0.00 0.00 1.82
1998 5514 9.586435 GATCTAAAATTCGAAATCCCAACAATT 57.414 29.630 0.00 0.00 0.00 2.32
2114 5642 5.139001 ACCCCGGAATTTAGTGTTTACAAA 58.861 37.500 0.73 0.00 0.00 2.83
2130 5658 1.347050 TGAACGAACAATTACCCCGGA 59.653 47.619 0.73 0.00 0.00 5.14
2131 5659 1.465777 GTGAACGAACAATTACCCCGG 59.534 52.381 0.00 0.00 0.00 5.73
2142 5670 7.060633 CCAAATAACAATAAGCAGTGAACGAAC 59.939 37.037 0.00 0.00 0.00 3.95
2174 5702 7.279758 GCTGAAAATGATACCATAGCTAGATCC 59.720 40.741 0.00 0.00 31.32 3.36
2186 5715 8.810652 TTACAAAAGTTGCTGAAAATGATACC 57.189 30.769 0.00 0.00 0.00 2.73
2239 5770 7.693969 AAGAAGAAATGTCACCTCCTTATTG 57.306 36.000 0.00 0.00 0.00 1.90
2240 5771 9.807921 TTAAAGAAGAAATGTCACCTCCTTATT 57.192 29.630 0.00 0.00 0.00 1.40
2241 5772 9.232473 GTTAAAGAAGAAATGTCACCTCCTTAT 57.768 33.333 0.00 0.00 0.00 1.73
2261 5792 9.454859 AAAATCCTGTAAGAGATCTGGTTAAAG 57.545 33.333 0.00 2.40 34.07 1.85
2519 6061 4.785376 AGAGAAGCCCAAAGATCCTTCTTA 59.215 41.667 9.97 0.00 42.81 2.10
2622 6167 7.071069 TGTTCTGCTAGTTCATATCCATCAT 57.929 36.000 0.00 0.00 0.00 2.45
2755 6325 3.387374 AGTTCCATTCAATGCCAACACAA 59.613 39.130 11.23 0.00 0.00 3.33
2842 6413 0.928505 TCCATCACCCATCATTGCCT 59.071 50.000 0.00 0.00 0.00 4.75
2867 6438 8.154649 TCCTTCCTATTGATTTATTTTCTCGC 57.845 34.615 0.00 0.00 0.00 5.03
2930 6502 9.825972 CACACAAGTTCGAATTATATTTCACTT 57.174 29.630 0.00 7.39 0.00 3.16
2937 6509 7.606456 AGACCAACACACAAGTTCGAATTATAT 59.394 33.333 0.00 0.00 0.00 0.86
2938 6510 6.932400 AGACCAACACACAAGTTCGAATTATA 59.068 34.615 0.00 0.00 0.00 0.98
2977 6549 7.277760 AGTTTAGTTTTGTTGCTGTTCAATTCC 59.722 33.333 0.00 0.00 36.99 3.01
3021 6593 5.744171 TCAGCTGCATGTATTCTTAGGAAA 58.256 37.500 9.47 0.00 34.90 3.13
3097 6671 8.148351 GCTTGGAATATAGGAAGTGTGTATACA 58.852 37.037 0.08 0.08 0.00 2.29
3188 6764 6.553953 TTAGTTTGTATGGGCATGAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
3239 6818 8.757982 AGGCTTAATGTAATTTCACATGAGAT 57.242 30.769 0.00 0.00 39.10 2.75
3263 6842 9.072375 TCACAAGTTATCATCATCTCTAGGTAG 57.928 37.037 0.00 0.00 0.00 3.18
3278 6857 8.946085 TGGATCATTTACTGTTCACAAGTTATC 58.054 33.333 0.00 0.00 0.00 1.75
3342 6922 3.159353 TGTGTGTGTCAGTGTGTCTAC 57.841 47.619 0.00 0.00 0.00 2.59
3383 6965 6.825213 ACACTCAGAACAATATGTATGCATGT 59.175 34.615 10.16 0.00 36.58 3.21
3475 7073 0.310543 TTTGCACGACAATGTCTGCC 59.689 50.000 24.19 13.38 38.31 4.85
3481 7079 6.183360 CCCTTTATGAATTTTGCACGACAATG 60.183 38.462 0.00 0.00 38.31 2.82
3488 7086 4.758688 CTCCCCCTTTATGAATTTTGCAC 58.241 43.478 0.00 0.00 0.00 4.57
3500 7098 0.620700 GGTGAGGAGCTCCCCCTTTA 60.621 60.000 29.54 4.47 36.42 1.85
3542 7144 6.183360 TGTTGAACAGTTGTCGAAGAGTAGTA 60.183 38.462 0.00 0.00 36.95 1.82
3559 7161 3.674997 GATGCCTAGGAGTTGTTGAACA 58.325 45.455 14.75 0.00 34.17 3.18
3560 7162 2.673368 CGATGCCTAGGAGTTGTTGAAC 59.327 50.000 14.75 0.00 0.00 3.18
3561 7163 2.565391 TCGATGCCTAGGAGTTGTTGAA 59.435 45.455 14.75 0.00 0.00 2.69
3562 7164 2.176045 TCGATGCCTAGGAGTTGTTGA 58.824 47.619 14.75 0.00 0.00 3.18
3563 7165 2.672961 TCGATGCCTAGGAGTTGTTG 57.327 50.000 14.75 0.00 0.00 3.33
3564 7166 2.766263 TCATCGATGCCTAGGAGTTGTT 59.234 45.455 20.81 0.00 0.00 2.83
3565 7167 2.388735 TCATCGATGCCTAGGAGTTGT 58.611 47.619 20.81 0.00 0.00 3.32
3566 7168 3.459232 TTCATCGATGCCTAGGAGTTG 57.541 47.619 20.81 3.75 0.00 3.16
3567 7169 4.503991 GGAATTCATCGATGCCTAGGAGTT 60.504 45.833 20.81 5.32 0.00 3.01
3568 7170 3.007398 GGAATTCATCGATGCCTAGGAGT 59.993 47.826 20.81 0.00 0.00 3.85
3569 7171 3.007290 TGGAATTCATCGATGCCTAGGAG 59.993 47.826 20.81 0.00 0.00 3.69
3570 7172 2.972021 TGGAATTCATCGATGCCTAGGA 59.028 45.455 20.81 0.00 0.00 2.94
3571 7173 3.407424 TGGAATTCATCGATGCCTAGG 57.593 47.619 20.81 3.67 0.00 3.02
3572 7174 4.319046 CGTTTGGAATTCATCGATGCCTAG 60.319 45.833 20.81 0.00 0.00 3.02
3573 7175 3.559655 CGTTTGGAATTCATCGATGCCTA 59.440 43.478 20.81 9.84 0.00 3.93
3574 7176 2.355756 CGTTTGGAATTCATCGATGCCT 59.644 45.455 20.81 7.11 0.00 4.75
3575 7177 2.097466 ACGTTTGGAATTCATCGATGCC 59.903 45.455 20.81 15.64 0.00 4.40
3576 7178 3.405170 ACGTTTGGAATTCATCGATGC 57.595 42.857 20.81 6.37 0.00 3.91
3577 7179 6.310960 TGTAAACGTTTGGAATTCATCGATG 58.689 36.000 23.46 19.61 0.00 3.84
3578 7180 6.489127 TGTAAACGTTTGGAATTCATCGAT 57.511 33.333 23.46 0.00 0.00 3.59
3579 7181 5.615984 GCTGTAAACGTTTGGAATTCATCGA 60.616 40.000 23.46 0.00 0.00 3.59
3580 7182 4.553429 GCTGTAAACGTTTGGAATTCATCG 59.447 41.667 23.46 8.26 0.00 3.84
3581 7183 4.553429 CGCTGTAAACGTTTGGAATTCATC 59.447 41.667 23.46 7.55 0.00 2.92
3582 7184 4.472286 CGCTGTAAACGTTTGGAATTCAT 58.528 39.130 23.46 0.00 0.00 2.57
3583 7185 3.304123 CCGCTGTAAACGTTTGGAATTCA 60.304 43.478 23.46 10.96 0.00 2.57
3584 7186 3.058777 TCCGCTGTAAACGTTTGGAATTC 60.059 43.478 23.46 0.00 0.00 2.17
3585 7187 2.879646 TCCGCTGTAAACGTTTGGAATT 59.120 40.909 23.46 0.00 0.00 2.17
3586 7188 2.482721 CTCCGCTGTAAACGTTTGGAAT 59.517 45.455 23.46 0.00 0.00 3.01
3587 7189 1.868498 CTCCGCTGTAAACGTTTGGAA 59.132 47.619 23.46 7.75 0.00 3.53
3588 7190 1.504359 CTCCGCTGTAAACGTTTGGA 58.496 50.000 23.46 18.26 0.00 3.53
3589 7191 0.515564 CCTCCGCTGTAAACGTTTGG 59.484 55.000 23.46 15.05 0.00 3.28
3590 7192 1.504359 TCCTCCGCTGTAAACGTTTG 58.496 50.000 23.46 8.10 0.00 2.93
3591 7193 2.243602 TTCCTCCGCTGTAAACGTTT 57.756 45.000 18.90 18.90 0.00 3.60
3592 7194 2.467566 ATTCCTCCGCTGTAAACGTT 57.532 45.000 0.00 0.00 0.00 3.99
3593 7195 2.467566 AATTCCTCCGCTGTAAACGT 57.532 45.000 0.00 0.00 0.00 3.99
3594 7196 4.178540 TCTTAATTCCTCCGCTGTAAACG 58.821 43.478 0.00 0.00 0.00 3.60
3595 7197 7.208080 TCTATCTTAATTCCTCCGCTGTAAAC 58.792 38.462 0.00 0.00 0.00 2.01
3596 7198 7.356089 TCTATCTTAATTCCTCCGCTGTAAA 57.644 36.000 0.00 0.00 0.00 2.01
3597 7199 6.971726 TCTATCTTAATTCCTCCGCTGTAA 57.028 37.500 0.00 0.00 0.00 2.41
3598 7200 6.153000 GGATCTATCTTAATTCCTCCGCTGTA 59.847 42.308 0.00 0.00 0.00 2.74
3599 7201 5.046950 GGATCTATCTTAATTCCTCCGCTGT 60.047 44.000 0.00 0.00 0.00 4.40
3600 7202 5.415221 GGATCTATCTTAATTCCTCCGCTG 58.585 45.833 0.00 0.00 0.00 5.18
3601 7203 4.468153 GGGATCTATCTTAATTCCTCCGCT 59.532 45.833 0.00 0.00 0.00 5.52
3602 7204 4.678309 CGGGATCTATCTTAATTCCTCCGC 60.678 50.000 0.00 0.00 0.00 5.54
3603 7205 4.678309 GCGGGATCTATCTTAATTCCTCCG 60.678 50.000 0.00 0.00 36.18 4.63
3604 7206 4.468153 AGCGGGATCTATCTTAATTCCTCC 59.532 45.833 0.00 0.00 0.00 4.30
3605 7207 5.669164 AGCGGGATCTATCTTAATTCCTC 57.331 43.478 0.00 0.00 0.00 3.71
3606 7208 5.046231 GGAAGCGGGATCTATCTTAATTCCT 60.046 44.000 0.00 0.00 31.81 3.36
3607 7209 5.046231 AGGAAGCGGGATCTATCTTAATTCC 60.046 44.000 0.00 0.00 34.12 3.01
3608 7210 6.043854 AGGAAGCGGGATCTATCTTAATTC 57.956 41.667 0.00 0.00 0.00 2.17
3609 7211 5.782845 AGAGGAAGCGGGATCTATCTTAATT 59.217 40.000 0.00 0.00 0.00 1.40
3610 7212 5.186797 CAGAGGAAGCGGGATCTATCTTAAT 59.813 44.000 0.00 0.00 0.00 1.40
3611 7213 4.524714 CAGAGGAAGCGGGATCTATCTTAA 59.475 45.833 0.00 0.00 0.00 1.85
3612 7214 4.082845 CAGAGGAAGCGGGATCTATCTTA 58.917 47.826 0.00 0.00 0.00 2.10
3613 7215 2.896685 CAGAGGAAGCGGGATCTATCTT 59.103 50.000 0.00 0.00 0.00 2.40
3614 7216 2.524306 CAGAGGAAGCGGGATCTATCT 58.476 52.381 0.00 0.00 0.00 1.98
3615 7217 1.548269 CCAGAGGAAGCGGGATCTATC 59.452 57.143 0.00 0.00 0.00 2.08
3616 7218 1.133009 ACCAGAGGAAGCGGGATCTAT 60.133 52.381 0.00 0.00 0.00 1.98
3617 7219 0.261991 ACCAGAGGAAGCGGGATCTA 59.738 55.000 0.00 0.00 0.00 1.98
3618 7220 1.002274 ACCAGAGGAAGCGGGATCT 59.998 57.895 0.00 0.00 0.00 2.75
3619 7221 1.330655 TGACCAGAGGAAGCGGGATC 61.331 60.000 0.00 0.00 0.00 3.36
3620 7222 0.909610 TTGACCAGAGGAAGCGGGAT 60.910 55.000 0.00 0.00 0.00 3.85
3621 7223 1.535444 TTGACCAGAGGAAGCGGGA 60.535 57.895 0.00 0.00 0.00 5.14
3622 7224 3.068881 TTGACCAGAGGAAGCGGG 58.931 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.