Multiple sequence alignment - TraesCS7D01G013000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G013000 chr7D 100.000 7238 0 0 1 7238 5465251 5458014 0.000000e+00 13367
1 TraesCS7D01G013000 chr7D 90.702 1710 137 17 441 2136 5649941 5648240 0.000000e+00 2257
2 TraesCS7D01G013000 chr7D 85.682 873 111 9 6223 7089 5447972 5447108 0.000000e+00 907
3 TraesCS7D01G013000 chr7D 98.990 396 4 0 5825 6220 609171537 609171142 0.000000e+00 710
4 TraesCS7D01G013000 chr7D 84.868 304 29 9 444 731 5778207 5777905 2.550000e-74 291
5 TraesCS7D01G013000 chr7D 90.594 202 7 5 102 292 5650127 5649927 2.590000e-64 257
6 TraesCS7D01G013000 chr7D 92.857 70 3 2 137 204 5779088 5779019 4.620000e-17 100
7 TraesCS7D01G013000 chr1D 99.598 2487 10 0 2139 4625 455999663 456002149 0.000000e+00 4538
8 TraesCS7D01G013000 chr1D 99.316 2487 11 1 2139 4625 444142674 444140194 0.000000e+00 4494
9 TraesCS7D01G013000 chr1D 98.694 1608 12 2 4625 6224 444139964 444138358 0.000000e+00 2844
10 TraesCS7D01G013000 chr1D 98.766 1540 9 2 4625 6154 456002379 456003918 0.000000e+00 2730
11 TraesCS7D01G013000 chr1D 95.205 146 5 2 296 440 9572764 9572620 5.650000e-56 230
12 TraesCS7D01G013000 chr6D 99.316 2487 11 1 2139 4625 21036432 21033952 0.000000e+00 4494
13 TraesCS7D01G013000 chr6D 98.754 1605 11 2 4625 6221 21033722 21032119 0.000000e+00 2844
14 TraesCS7D01G013000 chr6D 95.549 337 15 0 5887 6223 443270695 443271031 2.300000e-149 540
15 TraesCS7D01G013000 chr4D 98.695 1609 13 1 4625 6225 260436011 260434403 0.000000e+00 2848
16 TraesCS7D01G013000 chr4D 99.176 1577 12 1 3050 4625 260437817 260436241 0.000000e+00 2839
17 TraesCS7D01G013000 chr4D 99.010 909 8 1 2139 3047 260438849 260437942 0.000000e+00 1628
18 TraesCS7D01G013000 chr4D 84.242 165 11 8 289 440 497533392 497533230 5.850000e-31 147
19 TraesCS7D01G013000 chr6A 98.795 1577 17 2 3050 4625 42133251 42131676 0.000000e+00 2806
20 TraesCS7D01G013000 chr6A 97.136 1606 26 3 4625 6222 42131446 42129853 0.000000e+00 2693
21 TraesCS7D01G013000 chr6A 96.464 905 16 4 2138 3042 42134269 42133381 0.000000e+00 1480
22 TraesCS7D01G013000 chr5A 98.795 1577 18 1 3050 4625 525731921 525730345 0.000000e+00 2806
23 TraesCS7D01G013000 chr5A 96.462 1611 31 5 4625 6221 525730115 525728517 0.000000e+00 2636
24 TraesCS7D01G013000 chr5A 96.590 909 25 2 2139 3047 525732948 525732046 0.000000e+00 1502
25 TraesCS7D01G013000 chr3A 98.795 1577 18 1 3050 4625 750274842 750273266 0.000000e+00 2806
26 TraesCS7D01G013000 chr3A 96.887 1606 26 3 4625 6222 750273036 750271447 0.000000e+00 2667
27 TraesCS7D01G013000 chr3A 96.590 909 21 1 2139 3047 750275865 750274967 0.000000e+00 1498
28 TraesCS7D01G013000 chr4B 98.854 1571 18 0 3055 4625 21917974 21916404 0.000000e+00 2802
29 TraesCS7D01G013000 chr4B 96.389 1606 24 4 4625 6222 21916174 21914595 0.000000e+00 2614
30 TraesCS7D01G013000 chr4B 96.162 912 33 1 2138 3047 21919016 21918105 0.000000e+00 1489
31 TraesCS7D01G013000 chr4B 94.702 151 8 0 290 440 4675314 4675464 1.210000e-57 235
32 TraesCS7D01G013000 chr3B 95.955 1607 53 7 4625 6221 764125302 764126906 0.000000e+00 2597
33 TraesCS7D01G013000 chr3B 95.260 1540 66 6 3093 4625 764123533 764125072 0.000000e+00 2433
34 TraesCS7D01G013000 chr3B 94.967 1073 42 8 4925 5986 752884480 752883409 0.000000e+00 1672
35 TraesCS7D01G013000 chr3B 96.442 815 29 0 3096 3910 752885293 752884479 0.000000e+00 1345
36 TraesCS7D01G013000 chr4A 90.035 1736 124 32 441 2148 735488513 735486799 0.000000e+00 2202
37 TraesCS7D01G013000 chr4A 96.426 1287 40 2 868 2148 734582502 734583788 0.000000e+00 2117
38 TraesCS7D01G013000 chr4A 96.490 1282 39 2 873 2148 735003296 735004577 0.000000e+00 2113
39 TraesCS7D01G013000 chr4A 90.816 1274 106 5 873 2136 734585011 734586283 0.000000e+00 1694
40 TraesCS7D01G013000 chr4A 90.125 1276 120 2 873 2148 736147165 736148434 0.000000e+00 1653
41 TraesCS7D01G013000 chr4A 94.706 1020 46 6 6221 7238 735486817 735485804 0.000000e+00 1578
42 TraesCS7D01G013000 chr4A 94.412 1020 49 5 6221 7238 734583770 734584783 0.000000e+00 1561
43 TraesCS7D01G013000 chr4A 94.412 1020 49 5 6221 7238 735004559 735005572 0.000000e+00 1561
44 TraesCS7D01G013000 chr4A 89.853 1153 115 2 974 2125 735316290 735317441 0.000000e+00 1480
45 TraesCS7D01G013000 chr4A 82.522 1705 238 34 441 2129 736755796 736757456 0.000000e+00 1443
46 TraesCS7D01G013000 chr4A 89.718 1099 107 4 1041 2136 735747182 735748277 0.000000e+00 1399
47 TraesCS7D01G013000 chr4A 85.185 1026 135 10 6224 7238 734918586 734919605 0.000000e+00 1037
48 TraesCS7D01G013000 chr4A 84.578 1031 132 20 6227 7238 735819845 735820867 0.000000e+00 998
49 TraesCS7D01G013000 chr4A 83.554 1058 126 23 6221 7238 734386311 734387360 0.000000e+00 946
50 TraesCS7D01G013000 chr4A 83.491 1054 128 28 6224 7238 735317449 735318495 0.000000e+00 941
51 TraesCS7D01G013000 chr4A 85.763 885 104 13 6221 7090 734481275 734482152 0.000000e+00 917
52 TraesCS7D01G013000 chr4A 85.714 882 102 20 6227 7089 736412169 736411293 0.000000e+00 909
53 TraesCS7D01G013000 chr4A 83.043 1032 132 29 6221 7225 735021420 735022435 0.000000e+00 896
54 TraesCS7D01G013000 chr4A 85.338 873 115 8 6223 7089 736469552 736468687 0.000000e+00 891
55 TraesCS7D01G013000 chr4A 85.152 889 102 15 6221 7084 735768241 735769124 0.000000e+00 883
56 TraesCS7D01G013000 chr4A 84.910 888 108 14 6221 7091 735561567 735560689 0.000000e+00 874
57 TraesCS7D01G013000 chr4A 84.222 881 118 9 6223 7089 736897900 736898773 0.000000e+00 837
58 TraesCS7D01G013000 chr4A 90.576 382 24 5 441 819 734582117 734582489 5.040000e-136 496
59 TraesCS7D01G013000 chr4A 86.645 307 24 7 441 731 736146860 736147165 2.520000e-84 324
60 TraesCS7D01G013000 chr4A 85.993 307 26 8 441 731 735002991 735003296 5.450000e-81 313
61 TraesCS7D01G013000 chr4A 90.547 201 9 5 102 292 735002804 735003004 2.590000e-64 257
62 TraesCS7D01G013000 chr4A 90.050 201 10 5 102 292 736146673 736146873 1.210000e-62 252
63 TraesCS7D01G013000 chr4A 82.623 305 32 11 441 726 736823606 736823908 4.340000e-62 250
64 TraesCS7D01G013000 chr4A 88.125 160 14 4 137 292 736823461 736823619 1.240000e-42 185
65 TraesCS7D01G013000 chr4A 91.603 131 11 0 7108 7238 736057993 736058123 1.600000e-41 182
66 TraesCS7D01G013000 chr4A 90.909 132 12 0 7107 7238 735651766 735651635 2.070000e-40 178
67 TraesCS7D01G013000 chr4A 82.273 220 9 9 102 292 734581912 734582130 5.810000e-36 163
68 TraesCS7D01G013000 chr2D 95.511 1359 42 6 4843 6191 29639462 29638113 0.000000e+00 2154
69 TraesCS7D01G013000 chr1A 97.690 909 19 2 2139 3047 7851026 7851932 0.000000e+00 1561
70 TraesCS7D01G013000 chr1A 88.679 159 11 4 288 440 98711787 98711630 3.450000e-43 187
71 TraesCS7D01G013000 chr1A 86.928 153 14 5 293 440 314879423 314879574 4.490000e-37 167
72 TraesCS7D01G013000 chr5D 98.977 391 3 1 5804 6194 26539775 26539386 0.000000e+00 699
73 TraesCS7D01G013000 chr5D 89.441 161 7 4 289 440 538426829 538426988 2.060000e-45 195
74 TraesCS7D01G013000 chrUn 93.243 148 9 1 293 440 2383783 2383929 4.400000e-52 217
75 TraesCS7D01G013000 chr2A 91.333 150 9 3 293 440 578038894 578039041 1.230000e-47 202
76 TraesCS7D01G013000 chr7A 90.840 131 12 0 7108 7238 7320287 7320157 7.460000e-40 176
77 TraesCS7D01G013000 chr2B 84.663 163 11 9 291 440 763051756 763051595 4.520000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G013000 chr7D 5458014 5465251 7237 True 13367.000000 13367 100.000000 1 7238 1 chr7D.!!$R2 7237
1 TraesCS7D01G013000 chr7D 5648240 5650127 1887 True 1257.000000 2257 90.648000 102 2136 2 chr7D.!!$R4 2034
2 TraesCS7D01G013000 chr7D 5447108 5447972 864 True 907.000000 907 85.682000 6223 7089 1 chr7D.!!$R1 866
3 TraesCS7D01G013000 chr1D 444138358 444142674 4316 True 3669.000000 4494 99.005000 2139 6224 2 chr1D.!!$R2 4085
4 TraesCS7D01G013000 chr1D 455999663 456003918 4255 False 3634.000000 4538 99.182000 2139 6154 2 chr1D.!!$F1 4015
5 TraesCS7D01G013000 chr6D 21032119 21036432 4313 True 3669.000000 4494 99.035000 2139 6221 2 chr6D.!!$R1 4082
6 TraesCS7D01G013000 chr4D 260434403 260438849 4446 True 2438.333333 2848 98.960333 2139 6225 3 chr4D.!!$R2 4086
7 TraesCS7D01G013000 chr6A 42129853 42134269 4416 True 2326.333333 2806 97.465000 2138 6222 3 chr6A.!!$R1 4084
8 TraesCS7D01G013000 chr5A 525728517 525732948 4431 True 2314.666667 2806 97.282333 2139 6221 3 chr5A.!!$R1 4082
9 TraesCS7D01G013000 chr3A 750271447 750275865 4418 True 2323.666667 2806 97.424000 2139 6222 3 chr3A.!!$R1 4083
10 TraesCS7D01G013000 chr4B 21914595 21919016 4421 True 2301.666667 2802 97.135000 2138 6222 3 chr4B.!!$R1 4084
11 TraesCS7D01G013000 chr3B 764123533 764126906 3373 False 2515.000000 2597 95.607500 3093 6221 2 chr3B.!!$F1 3128
12 TraesCS7D01G013000 chr3B 752883409 752885293 1884 True 1508.500000 1672 95.704500 3096 5986 2 chr3B.!!$R1 2890
13 TraesCS7D01G013000 chr4A 735485804 735488513 2709 True 1890.000000 2202 92.370500 441 7238 2 chr4A.!!$R5 6797
14 TraesCS7D01G013000 chr4A 736755796 736757456 1660 False 1443.000000 1443 82.522000 441 2129 1 chr4A.!!$F9 1688
15 TraesCS7D01G013000 chr4A 735747182 735748277 1095 False 1399.000000 1399 89.718000 1041 2136 1 chr4A.!!$F5 1095
16 TraesCS7D01G013000 chr4A 735316290 735318495 2205 False 1210.500000 1480 86.672000 974 7238 2 chr4A.!!$F13 6264
17 TraesCS7D01G013000 chr4A 734581912 734586283 4371 False 1206.200000 2117 90.900600 102 7238 5 chr4A.!!$F11 7136
18 TraesCS7D01G013000 chr4A 735002804 735005572 2768 False 1061.000000 2113 91.860500 102 7238 4 chr4A.!!$F12 7136
19 TraesCS7D01G013000 chr4A 734918586 734919605 1019 False 1037.000000 1037 85.185000 6224 7238 1 chr4A.!!$F3 1014
20 TraesCS7D01G013000 chr4A 735819845 735820867 1022 False 998.000000 998 84.578000 6227 7238 1 chr4A.!!$F7 1011
21 TraesCS7D01G013000 chr4A 734386311 734387360 1049 False 946.000000 946 83.554000 6221 7238 1 chr4A.!!$F1 1017
22 TraesCS7D01G013000 chr4A 734481275 734482152 877 False 917.000000 917 85.763000 6221 7090 1 chr4A.!!$F2 869
23 TraesCS7D01G013000 chr4A 736411293 736412169 876 True 909.000000 909 85.714000 6227 7089 1 chr4A.!!$R3 862
24 TraesCS7D01G013000 chr4A 735021420 735022435 1015 False 896.000000 896 83.043000 6221 7225 1 chr4A.!!$F4 1004
25 TraesCS7D01G013000 chr4A 736468687 736469552 865 True 891.000000 891 85.338000 6223 7089 1 chr4A.!!$R4 866
26 TraesCS7D01G013000 chr4A 735768241 735769124 883 False 883.000000 883 85.152000 6221 7084 1 chr4A.!!$F6 863
27 TraesCS7D01G013000 chr4A 735560689 735561567 878 True 874.000000 874 84.910000 6221 7091 1 chr4A.!!$R1 870
28 TraesCS7D01G013000 chr4A 736897900 736898773 873 False 837.000000 837 84.222000 6223 7089 1 chr4A.!!$F10 866
29 TraesCS7D01G013000 chr4A 736146673 736148434 1761 False 743.000000 1653 88.940000 102 2148 3 chr4A.!!$F14 2046
30 TraesCS7D01G013000 chr2D 29638113 29639462 1349 True 2154.000000 2154 95.511000 4843 6191 1 chr2D.!!$R1 1348
31 TraesCS7D01G013000 chr1A 7851026 7851932 906 False 1561.000000 1561 97.690000 2139 3047 1 chr1A.!!$F1 908

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 460 0.034186 CTGGGGGAGCAGCACAATAA 60.034 55.000 0.0 0.0 0.00 1.40 F
1341 1426 0.325933 CCTCCTCCATCAGCAACACA 59.674 55.000 0.0 0.0 0.00 3.72 F
1461 1546 1.876664 GAAAGCCAAGGACTTCCGC 59.123 57.895 0.0 0.0 42.08 5.54 F
1467 1552 1.880646 GCCAAGGACTTCCGCAAACTA 60.881 52.381 0.0 0.0 42.08 2.24 F
2136 2225 2.254546 TCAGAAATCCACAGTTGCGT 57.745 45.000 0.0 0.0 0.00 5.24 F
3805 4032 3.476552 TCTTCAAGAACAAGGTTGCGAT 58.523 40.909 0.0 0.0 0.00 4.58 F
5301 5766 9.592720 TTTTATGTCGTATGATTTCAATATGCG 57.407 29.630 0.0 0.0 0.00 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2183 1.022735 CTGGTCCAGAGAATGCATGC 58.977 55.000 14.26 11.82 32.44 4.06 R
2303 2394 1.429930 TTGGGCTGTAGAGTTGGACA 58.570 50.000 0.00 0.00 0.00 4.02 R
3769 3996 7.382488 TGTTCTTGAAGATCTTACACTTCTTCG 59.618 37.037 8.25 0.00 45.32 3.79 R
3805 4032 5.123186 CCAAGCCGTGATTGTATAAGTTTCA 59.877 40.000 2.13 0.00 0.00 2.69 R
4482 4715 0.896226 ACTGTCTCCCTTAGGTTCGC 59.104 55.000 0.00 0.00 0.00 4.70 R
5374 5839 0.749649 CCTTCTCCACATCCTCCTCG 59.250 60.000 0.00 0.00 0.00 4.63 R
6495 6991 0.698818 AGACCCTCACCCATCCAAAC 59.301 55.000 0.00 0.00 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.965888 AGACAGGGACAGGCAAATC 57.034 52.632 0.00 0.00 0.00 2.17
19 20 1.067295 AGACAGGGACAGGCAAATCA 58.933 50.000 0.00 0.00 0.00 2.57
20 21 1.168714 GACAGGGACAGGCAAATCAC 58.831 55.000 0.00 0.00 0.00 3.06
21 22 0.773644 ACAGGGACAGGCAAATCACT 59.226 50.000 0.00 0.00 0.00 3.41
22 23 1.985159 ACAGGGACAGGCAAATCACTA 59.015 47.619 0.00 0.00 0.00 2.74
23 24 2.578021 ACAGGGACAGGCAAATCACTAT 59.422 45.455 0.00 0.00 0.00 2.12
24 25 2.947652 CAGGGACAGGCAAATCACTATG 59.052 50.000 0.00 0.00 0.00 2.23
25 26 2.092212 AGGGACAGGCAAATCACTATGG 60.092 50.000 0.00 0.00 0.00 2.74
26 27 2.092429 GGGACAGGCAAATCACTATGGA 60.092 50.000 0.00 0.00 0.00 3.41
27 28 3.620488 GGACAGGCAAATCACTATGGAA 58.380 45.455 0.00 0.00 0.00 3.53
28 29 3.378427 GGACAGGCAAATCACTATGGAAC 59.622 47.826 0.00 0.00 0.00 3.62
29 30 3.356290 ACAGGCAAATCACTATGGAACC 58.644 45.455 0.00 0.00 0.00 3.62
30 31 2.355756 CAGGCAAATCACTATGGAACCG 59.644 50.000 0.00 0.00 0.00 4.44
31 32 2.238646 AGGCAAATCACTATGGAACCGA 59.761 45.455 0.00 0.00 0.00 4.69
32 33 2.614057 GGCAAATCACTATGGAACCGAG 59.386 50.000 0.00 0.00 0.00 4.63
33 34 2.614057 GCAAATCACTATGGAACCGAGG 59.386 50.000 0.00 0.00 0.00 4.63
34 35 3.681594 GCAAATCACTATGGAACCGAGGA 60.682 47.826 0.00 0.00 0.00 3.71
35 36 4.513442 CAAATCACTATGGAACCGAGGAA 58.487 43.478 0.00 0.00 0.00 3.36
36 37 5.126067 CAAATCACTATGGAACCGAGGAAT 58.874 41.667 0.00 0.00 0.00 3.01
37 38 5.373812 AATCACTATGGAACCGAGGAATT 57.626 39.130 0.00 0.00 0.00 2.17
38 39 4.402056 TCACTATGGAACCGAGGAATTC 57.598 45.455 0.00 0.00 0.00 2.17
39 40 3.134081 TCACTATGGAACCGAGGAATTCC 59.866 47.826 17.31 17.31 44.08 3.01
49 50 3.402628 CGAGGAATTCCACGGGATATT 57.597 47.619 29.84 6.61 44.52 1.28
50 51 3.740115 CGAGGAATTCCACGGGATATTT 58.260 45.455 29.84 5.89 44.52 1.40
51 52 3.498397 CGAGGAATTCCACGGGATATTTG 59.502 47.826 29.84 6.88 44.52 2.32
52 53 4.714632 GAGGAATTCCACGGGATATTTGA 58.285 43.478 26.22 0.00 38.89 2.69
53 54 5.316987 GAGGAATTCCACGGGATATTTGAT 58.683 41.667 26.22 0.00 38.89 2.57
54 55 6.448369 AGGAATTCCACGGGATATTTGATA 57.552 37.500 26.22 0.00 38.89 2.15
55 56 6.238648 AGGAATTCCACGGGATATTTGATAC 58.761 40.000 26.22 0.00 38.89 2.24
56 57 6.044404 AGGAATTCCACGGGATATTTGATACT 59.956 38.462 26.22 0.00 38.89 2.12
57 58 7.236847 AGGAATTCCACGGGATATTTGATACTA 59.763 37.037 26.22 0.00 38.89 1.82
58 59 7.333672 GGAATTCCACGGGATATTTGATACTAC 59.666 40.741 20.04 0.00 35.64 2.73
59 60 6.989155 TTCCACGGGATATTTGATACTACT 57.011 37.500 0.00 0.00 0.00 2.57
60 61 8.660295 ATTCCACGGGATATTTGATACTACTA 57.340 34.615 0.00 0.00 0.00 1.82
61 62 8.660295 TTCCACGGGATATTTGATACTACTAT 57.340 34.615 0.00 0.00 0.00 2.12
62 63 8.660295 TCCACGGGATATTTGATACTACTATT 57.340 34.615 0.00 0.00 0.00 1.73
63 64 9.758021 TCCACGGGATATTTGATACTACTATTA 57.242 33.333 0.00 0.00 0.00 0.98
64 65 9.798994 CCACGGGATATTTGATACTACTATTAC 57.201 37.037 0.00 0.00 0.00 1.89
65 66 9.798994 CACGGGATATTTGATACTACTATTACC 57.201 37.037 0.00 0.00 0.00 2.85
66 67 9.765295 ACGGGATATTTGATACTACTATTACCT 57.235 33.333 0.00 0.00 0.00 3.08
74 75 8.942338 TTGATACTACTATTACCTTGTTGCTG 57.058 34.615 0.00 0.00 0.00 4.41
75 76 8.074613 TGATACTACTATTACCTTGTTGCTGT 57.925 34.615 0.00 0.00 0.00 4.40
76 77 8.537016 TGATACTACTATTACCTTGTTGCTGTT 58.463 33.333 0.00 0.00 0.00 3.16
77 78 9.379791 GATACTACTATTACCTTGTTGCTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
78 79 7.435068 ACTACTATTACCTTGTTGCTGTTTG 57.565 36.000 0.00 0.00 0.00 2.93
79 80 5.121221 ACTATTACCTTGTTGCTGTTTGC 57.879 39.130 0.00 0.00 43.25 3.68
80 81 2.483583 TTACCTTGTTGCTGTTTGCG 57.516 45.000 0.00 0.00 46.63 4.85
81 82 1.669604 TACCTTGTTGCTGTTTGCGA 58.330 45.000 0.00 0.00 46.63 5.10
82 83 1.032014 ACCTTGTTGCTGTTTGCGAT 58.968 45.000 0.00 0.00 46.63 4.58
83 84 1.408702 ACCTTGTTGCTGTTTGCGATT 59.591 42.857 0.00 0.00 46.63 3.34
84 85 2.159114 ACCTTGTTGCTGTTTGCGATTT 60.159 40.909 0.00 0.00 46.63 2.17
85 86 2.865551 CCTTGTTGCTGTTTGCGATTTT 59.134 40.909 0.00 0.00 46.63 1.82
86 87 3.309410 CCTTGTTGCTGTTTGCGATTTTT 59.691 39.130 0.00 0.00 46.63 1.94
156 158 0.104855 ACGCTGCTTCTCACTTGTCA 59.895 50.000 0.00 0.00 0.00 3.58
172 174 1.616374 TGTCATCCGTGTAAGCTCACA 59.384 47.619 6.39 0.00 38.12 3.58
207 231 5.885912 TCTGTTTTCCTATACAAATCTGGCC 59.114 40.000 0.00 0.00 0.00 5.36
281 314 0.762418 TCCAACAGGTGTTCATCCGT 59.238 50.000 0.00 0.00 35.83 4.69
282 315 1.142060 TCCAACAGGTGTTCATCCGTT 59.858 47.619 0.00 0.00 35.83 4.44
283 316 1.266718 CCAACAGGTGTTCATCCGTTG 59.733 52.381 5.49 5.49 38.20 4.10
284 317 0.951558 AACAGGTGTTCATCCGTTGC 59.048 50.000 0.00 0.00 31.64 4.17
285 318 0.108585 ACAGGTGTTCATCCGTTGCT 59.891 50.000 0.00 0.00 0.00 3.91
286 319 1.346395 ACAGGTGTTCATCCGTTGCTA 59.654 47.619 0.00 0.00 0.00 3.49
287 320 2.027192 ACAGGTGTTCATCCGTTGCTAT 60.027 45.455 0.00 0.00 0.00 2.97
288 321 3.196901 ACAGGTGTTCATCCGTTGCTATA 59.803 43.478 0.00 0.00 0.00 1.31
289 322 4.141711 ACAGGTGTTCATCCGTTGCTATAT 60.142 41.667 0.00 0.00 0.00 0.86
290 323 4.816385 CAGGTGTTCATCCGTTGCTATATT 59.184 41.667 0.00 0.00 0.00 1.28
291 324 5.050091 CAGGTGTTCATCCGTTGCTATATTC 60.050 44.000 0.00 0.00 0.00 1.75
292 325 4.084537 GGTGTTCATCCGTTGCTATATTCG 60.085 45.833 0.00 0.00 0.00 3.34
293 326 4.743151 GTGTTCATCCGTTGCTATATTCGA 59.257 41.667 0.00 0.00 0.00 3.71
294 327 4.743151 TGTTCATCCGTTGCTATATTCGAC 59.257 41.667 0.00 0.00 0.00 4.20
295 328 3.561503 TCATCCGTTGCTATATTCGACG 58.438 45.455 9.31 9.31 40.13 5.12
296 329 3.251487 TCATCCGTTGCTATATTCGACGA 59.749 43.478 15.10 0.00 42.31 4.20
297 330 3.696281 TCCGTTGCTATATTCGACGAA 57.304 42.857 13.48 13.48 42.31 3.85
298 331 4.031418 TCCGTTGCTATATTCGACGAAA 57.969 40.909 15.22 4.74 42.31 3.46
299 332 4.613944 TCCGTTGCTATATTCGACGAAAT 58.386 39.130 15.22 11.50 42.31 2.17
300 333 5.045215 TCCGTTGCTATATTCGACGAAATT 58.955 37.500 15.22 7.57 42.31 1.82
301 334 5.051307 TCCGTTGCTATATTCGACGAAATTG 60.051 40.000 15.22 10.94 42.31 2.32
302 335 5.130519 CGTTGCTATATTCGACGAAATTGG 58.869 41.667 15.22 8.09 42.31 3.16
303 336 5.440685 GTTGCTATATTCGACGAAATTGGG 58.559 41.667 15.22 5.61 0.00 4.12
304 337 4.699637 TGCTATATTCGACGAAATTGGGT 58.300 39.130 15.22 0.00 0.00 4.51
305 338 5.120399 TGCTATATTCGACGAAATTGGGTT 58.880 37.500 15.22 0.00 0.00 4.11
306 339 5.235616 TGCTATATTCGACGAAATTGGGTTC 59.764 40.000 15.22 0.70 0.00 3.62
307 340 5.333875 GCTATATTCGACGAAATTGGGTTCC 60.334 44.000 15.22 0.00 0.00 3.62
308 341 1.525941 TTCGACGAAATTGGGTTCCC 58.474 50.000 8.05 0.12 0.00 3.97
309 342 0.321830 TCGACGAAATTGGGTTCCCC 60.322 55.000 5.34 0.00 45.71 4.81
320 353 2.670019 GGGTTCCCCCGCTTTATATT 57.330 50.000 0.00 0.00 42.41 1.28
321 354 3.793819 GGGTTCCCCCGCTTTATATTA 57.206 47.619 0.00 0.00 42.41 0.98
322 355 4.311520 GGGTTCCCCCGCTTTATATTAT 57.688 45.455 0.00 0.00 42.41 1.28
323 356 5.440207 GGGTTCCCCCGCTTTATATTATA 57.560 43.478 0.00 0.00 42.41 0.98
324 357 5.818887 GGGTTCCCCCGCTTTATATTATAA 58.181 41.667 0.00 0.00 42.41 0.98
325 358 6.247676 GGGTTCCCCCGCTTTATATTATAAA 58.752 40.000 8.26 8.26 42.41 1.40
326 359 6.376299 GGGTTCCCCCGCTTTATATTATAAAG 59.624 42.308 23.28 23.28 42.41 1.85
327 360 6.944290 GGTTCCCCCGCTTTATATTATAAAGT 59.056 38.462 25.98 0.00 37.00 2.66
328 361 7.120285 GGTTCCCCCGCTTTATATTATAAAGTC 59.880 40.741 25.98 19.80 37.00 3.01
329 362 7.563724 TCCCCCGCTTTATATTATAAAGTCT 57.436 36.000 25.98 0.00 37.00 3.24
330 363 7.391620 TCCCCCGCTTTATATTATAAAGTCTG 58.608 38.462 25.98 19.07 37.00 3.51
331 364 6.598064 CCCCCGCTTTATATTATAAAGTCTGG 59.402 42.308 25.98 23.71 37.00 3.86
332 365 7.391620 CCCCGCTTTATATTATAAAGTCTGGA 58.608 38.462 25.98 1.53 37.00 3.86
333 366 7.333672 CCCCGCTTTATATTATAAAGTCTGGAC 59.666 40.741 25.98 14.06 37.00 4.02
334 367 7.333672 CCCGCTTTATATTATAAAGTCTGGACC 59.666 40.741 25.98 13.58 37.00 4.46
335 368 7.876068 CCGCTTTATATTATAAAGTCTGGACCA 59.124 37.037 25.98 0.00 37.00 4.02
336 369 9.268268 CGCTTTATATTATAAAGTCTGGACCAA 57.732 33.333 25.98 0.00 37.00 3.67
341 374 6.759497 ATTATAAAGTCTGGACCAAAGCAC 57.241 37.500 0.00 0.00 0.00 4.40
342 375 2.435372 AAAGTCTGGACCAAAGCACA 57.565 45.000 0.00 0.00 0.00 4.57
343 376 1.680338 AAGTCTGGACCAAAGCACAC 58.320 50.000 0.00 0.00 0.00 3.82
344 377 0.546122 AGTCTGGACCAAAGCACACA 59.454 50.000 0.00 0.00 0.00 3.72
345 378 0.947244 GTCTGGACCAAAGCACACAG 59.053 55.000 0.00 0.00 0.00 3.66
346 379 0.179020 TCTGGACCAAAGCACACAGG 60.179 55.000 0.00 0.00 0.00 4.00
347 380 0.466189 CTGGACCAAAGCACACAGGT 60.466 55.000 0.00 0.00 37.00 4.00
348 381 0.840617 TGGACCAAAGCACACAGGTA 59.159 50.000 0.00 0.00 33.77 3.08
349 382 1.202758 TGGACCAAAGCACACAGGTAG 60.203 52.381 0.00 0.00 33.77 3.18
350 383 0.875059 GACCAAAGCACACAGGTAGC 59.125 55.000 0.00 0.00 33.77 3.58
351 384 0.182537 ACCAAAGCACACAGGTAGCA 59.817 50.000 0.00 0.00 31.32 3.49
352 385 1.317613 CCAAAGCACACAGGTAGCAA 58.682 50.000 0.00 0.00 0.00 3.91
353 386 1.001378 CCAAAGCACACAGGTAGCAAC 60.001 52.381 0.00 0.00 0.00 4.17
354 387 1.675483 CAAAGCACACAGGTAGCAACA 59.325 47.619 0.00 0.00 0.00 3.33
355 388 2.051334 AAGCACACAGGTAGCAACAA 57.949 45.000 0.00 0.00 0.00 2.83
356 389 1.597742 AGCACACAGGTAGCAACAAG 58.402 50.000 0.00 0.00 0.00 3.16
357 390 0.593128 GCACACAGGTAGCAACAAGG 59.407 55.000 0.00 0.00 0.00 3.61
358 391 1.967319 CACACAGGTAGCAACAAGGT 58.033 50.000 0.00 0.00 0.00 3.50
359 392 2.297701 CACACAGGTAGCAACAAGGTT 58.702 47.619 0.00 0.00 0.00 3.50
360 393 2.290641 CACACAGGTAGCAACAAGGTTC 59.709 50.000 0.00 0.00 0.00 3.62
361 394 2.092646 ACACAGGTAGCAACAAGGTTCA 60.093 45.455 0.00 0.00 0.00 3.18
362 395 2.948979 CACAGGTAGCAACAAGGTTCAA 59.051 45.455 0.00 0.00 0.00 2.69
363 396 2.949644 ACAGGTAGCAACAAGGTTCAAC 59.050 45.455 0.00 0.00 0.00 3.18
364 397 2.032030 CAGGTAGCAACAAGGTTCAACG 60.032 50.000 0.00 0.00 0.00 4.10
365 398 1.334689 GGTAGCAACAAGGTTCAACGC 60.335 52.381 0.00 0.00 0.00 4.84
366 399 0.584396 TAGCAACAAGGTTCAACGCG 59.416 50.000 3.53 3.53 0.00 6.01
367 400 2.292916 GCAACAAGGTTCAACGCGC 61.293 57.895 5.73 0.00 0.00 6.86
368 401 2.003443 CAACAAGGTTCAACGCGCG 61.003 57.895 30.96 30.96 0.00 6.86
369 402 3.800323 AACAAGGTTCAACGCGCGC 62.800 57.895 32.58 23.91 0.00 6.86
370 403 4.306471 CAAGGTTCAACGCGCGCA 62.306 61.111 32.58 11.75 0.00 6.09
371 404 4.307908 AAGGTTCAACGCGCGCAC 62.308 61.111 32.58 20.72 0.00 5.34
374 407 4.583254 GTTCAACGCGCGCACACA 62.583 61.111 32.58 8.99 0.00 3.72
375 408 4.583254 TTCAACGCGCGCACACAC 62.583 61.111 32.58 0.00 0.00 3.82
382 415 3.705638 CGCGCACACACACCAGAG 61.706 66.667 8.75 0.00 0.00 3.35
383 416 2.588877 GCGCACACACACCAGAGT 60.589 61.111 0.30 0.00 0.00 3.24
384 417 1.300620 GCGCACACACACCAGAGTA 60.301 57.895 0.30 0.00 0.00 2.59
385 418 1.557443 GCGCACACACACCAGAGTAC 61.557 60.000 0.30 0.00 0.00 2.73
386 419 0.249280 CGCACACACACCAGAGTACA 60.249 55.000 0.00 0.00 0.00 2.90
387 420 1.804746 CGCACACACACCAGAGTACAA 60.805 52.381 0.00 0.00 0.00 2.41
388 421 2.494059 GCACACACACCAGAGTACAAT 58.506 47.619 0.00 0.00 0.00 2.71
389 422 3.659786 GCACACACACCAGAGTACAATA 58.340 45.455 0.00 0.00 0.00 1.90
390 423 4.062293 GCACACACACCAGAGTACAATAA 58.938 43.478 0.00 0.00 0.00 1.40
391 424 4.513692 GCACACACACCAGAGTACAATAAA 59.486 41.667 0.00 0.00 0.00 1.40
392 425 5.560183 GCACACACACCAGAGTACAATAAAC 60.560 44.000 0.00 0.00 0.00 2.01
393 426 5.525745 CACACACACCAGAGTACAATAAACA 59.474 40.000 0.00 0.00 0.00 2.83
394 427 5.526111 ACACACACCAGAGTACAATAAACAC 59.474 40.000 0.00 0.00 0.00 3.32
395 428 5.525745 CACACACCAGAGTACAATAAACACA 59.474 40.000 0.00 0.00 0.00 3.72
396 429 5.526111 ACACACCAGAGTACAATAAACACAC 59.474 40.000 0.00 0.00 0.00 3.82
397 430 5.049680 CACACCAGAGTACAATAAACACACC 60.050 44.000 0.00 0.00 0.00 4.16
398 431 5.060506 CACCAGAGTACAATAAACACACCA 58.939 41.667 0.00 0.00 0.00 4.17
399 432 5.179368 CACCAGAGTACAATAAACACACCAG 59.821 44.000 0.00 0.00 0.00 4.00
400 433 5.071250 ACCAGAGTACAATAAACACACCAGA 59.929 40.000 0.00 0.00 0.00 3.86
401 434 5.995282 CCAGAGTACAATAAACACACCAGAA 59.005 40.000 0.00 0.00 0.00 3.02
402 435 6.147821 CCAGAGTACAATAAACACACCAGAAG 59.852 42.308 0.00 0.00 0.00 2.85
403 436 6.706270 CAGAGTACAATAAACACACCAGAAGT 59.294 38.462 0.00 0.00 0.00 3.01
404 437 6.929606 AGAGTACAATAAACACACCAGAAGTC 59.070 38.462 0.00 0.00 0.00 3.01
405 438 6.827727 AGTACAATAAACACACCAGAAGTCT 58.172 36.000 0.00 0.00 0.00 3.24
406 439 7.959175 AGTACAATAAACACACCAGAAGTCTA 58.041 34.615 0.00 0.00 0.00 2.59
407 440 8.088981 AGTACAATAAACACACCAGAAGTCTAG 58.911 37.037 0.00 0.00 0.00 2.43
408 441 5.701290 ACAATAAACACACCAGAAGTCTAGC 59.299 40.000 0.00 0.00 0.00 3.42
409 442 5.746990 ATAAACACACCAGAAGTCTAGCT 57.253 39.130 0.00 0.00 0.00 3.32
410 443 3.393089 AACACACCAGAAGTCTAGCTG 57.607 47.619 0.00 0.00 0.00 4.24
414 447 2.216148 CCAGAAGTCTAGCTGGGGG 58.784 63.158 11.98 0.00 46.24 5.40
415 448 0.325671 CCAGAAGTCTAGCTGGGGGA 60.326 60.000 11.98 0.00 46.24 4.81
416 449 1.118838 CAGAAGTCTAGCTGGGGGAG 58.881 60.000 0.00 0.00 0.00 4.30
425 458 2.357836 CTGGGGGAGCAGCACAAT 59.642 61.111 0.00 0.00 0.00 2.71
426 459 1.609239 CTGGGGGAGCAGCACAATA 59.391 57.895 0.00 0.00 0.00 1.90
427 460 0.034186 CTGGGGGAGCAGCACAATAA 60.034 55.000 0.00 0.00 0.00 1.40
428 461 0.630673 TGGGGGAGCAGCACAATAAT 59.369 50.000 0.00 0.00 0.00 1.28
429 462 1.322442 GGGGGAGCAGCACAATAATC 58.678 55.000 0.00 0.00 0.00 1.75
430 463 1.322442 GGGGAGCAGCACAATAATCC 58.678 55.000 0.00 0.00 0.00 3.01
431 464 1.322442 GGGAGCAGCACAATAATCCC 58.678 55.000 0.00 0.00 39.67 3.85
432 465 1.322442 GGAGCAGCACAATAATCCCC 58.678 55.000 0.00 0.00 0.00 4.81
433 466 1.410083 GGAGCAGCACAATAATCCCCA 60.410 52.381 0.00 0.00 0.00 4.96
434 467 2.378038 GAGCAGCACAATAATCCCCAA 58.622 47.619 0.00 0.00 0.00 4.12
435 468 2.760092 GAGCAGCACAATAATCCCCAAA 59.240 45.455 0.00 0.00 0.00 3.28
436 469 3.377573 AGCAGCACAATAATCCCCAAAT 58.622 40.909 0.00 0.00 0.00 2.32
437 470 4.545678 AGCAGCACAATAATCCCCAAATA 58.454 39.130 0.00 0.00 0.00 1.40
438 471 4.961730 AGCAGCACAATAATCCCCAAATAA 59.038 37.500 0.00 0.00 0.00 1.40
439 472 5.069516 AGCAGCACAATAATCCCCAAATAAG 59.930 40.000 0.00 0.00 0.00 1.73
440 473 5.291971 CAGCACAATAATCCCCAAATAAGC 58.708 41.667 0.00 0.00 0.00 3.09
441 474 4.344968 AGCACAATAATCCCCAAATAAGCC 59.655 41.667 0.00 0.00 0.00 4.35
442 475 4.795962 GCACAATAATCCCCAAATAAGCCG 60.796 45.833 0.00 0.00 0.00 5.52
479 512 3.259902 GTTGTTTCTACCTCCGATCCAC 58.740 50.000 0.00 0.00 0.00 4.02
655 709 5.127682 GGTTTTTATCCATCAGTGCTTCCAT 59.872 40.000 0.00 0.00 0.00 3.41
731 787 4.867086 ACCCTGAAAAAGAGAGTGGAAAA 58.133 39.130 0.00 0.00 0.00 2.29
883 961 5.822204 AGAAGTCTGCTTAGGAGAAGTCTA 58.178 41.667 4.72 0.00 34.61 2.59
894 972 8.258708 GCTTAGGAGAAGTCTATTCTTTTACCA 58.741 37.037 0.00 0.00 0.00 3.25
901 979 8.661345 AGAAGTCTATTCTTTTACCAGTTTCCT 58.339 33.333 0.00 0.00 0.00 3.36
1246 1331 2.552093 AGAAGGCTTCTACCTGGCTA 57.448 50.000 27.62 0.00 39.93 3.93
1341 1426 0.325933 CCTCCTCCATCAGCAACACA 59.674 55.000 0.00 0.00 0.00 3.72
1461 1546 1.876664 GAAAGCCAAGGACTTCCGC 59.123 57.895 0.00 0.00 42.08 5.54
1467 1552 1.880646 GCCAAGGACTTCCGCAAACTA 60.881 52.381 0.00 0.00 42.08 2.24
1569 1654 3.653344 TCTGAAAGTGATTGGTCGTGAG 58.347 45.455 0.00 0.00 33.76 3.51
2068 2157 5.122519 GTCCTCTGGAAAAGATGGAAGATC 58.877 45.833 0.00 0.00 35.37 2.75
2094 2183 3.629398 AGTTCTTGGCACTCTTCAAACAG 59.371 43.478 0.00 0.00 0.00 3.16
2115 2204 2.286872 CATGCATTCTCTGGACCAGAC 58.713 52.381 20.74 10.84 35.39 3.51
2136 2225 2.254546 TCAGAAATCCACAGTTGCGT 57.745 45.000 0.00 0.00 0.00 5.24
2303 2394 4.400961 GAGCCAGCCCGTGAGCTT 62.401 66.667 0.00 0.00 42.61 3.74
3769 3996 5.448632 GCACCACAACACTTAATAGGCATAC 60.449 44.000 0.00 0.00 0.00 2.39
3805 4032 3.476552 TCTTCAAGAACAAGGTTGCGAT 58.523 40.909 0.00 0.00 0.00 4.58
5301 5766 9.592720 TTTTATGTCGTATGATTTCAATATGCG 57.407 29.630 0.00 0.00 0.00 4.73
5374 5839 5.033589 AGGATGTGGAAGAAGATGATGAC 57.966 43.478 0.00 0.00 0.00 3.06
5785 6261 5.574443 GGTTTATCAATTTCTTCAGTGCTGC 59.426 40.000 0.00 0.00 0.00 5.25
6495 6991 9.467258 GGTATGTCATTGATGATTTGGTTTATG 57.533 33.333 0.00 0.00 39.30 1.90
6572 7068 1.923356 TTGGGAGGGATTGCTTCAAC 58.077 50.000 0.00 0.00 0.00 3.18
6576 7072 1.339151 GGAGGGATTGCTTCAACGAGT 60.339 52.381 0.00 0.00 0.00 4.18
6578 7074 2.814336 GAGGGATTGCTTCAACGAGTTT 59.186 45.455 0.00 0.00 0.00 2.66
6580 7076 2.351738 GGGATTGCTTCAACGAGTTTGG 60.352 50.000 0.00 0.00 35.69 3.28
6581 7077 2.552315 GGATTGCTTCAACGAGTTTGGA 59.448 45.455 0.00 0.00 35.69 3.53
6582 7078 3.004315 GGATTGCTTCAACGAGTTTGGAA 59.996 43.478 0.00 0.00 35.69 3.53
6583 7079 3.691049 TTGCTTCAACGAGTTTGGAAG 57.309 42.857 10.07 10.07 35.69 3.46
6584 7080 2.912771 TGCTTCAACGAGTTTGGAAGA 58.087 42.857 15.70 3.74 35.69 2.87
6585 7081 3.476552 TGCTTCAACGAGTTTGGAAGAT 58.523 40.909 15.70 0.00 35.69 2.40
6587 7083 4.024048 TGCTTCAACGAGTTTGGAAGATTC 60.024 41.667 15.70 4.06 35.69 2.52
6588 7084 4.024048 GCTTCAACGAGTTTGGAAGATTCA 60.024 41.667 15.70 0.00 35.69 2.57
6589 7085 5.335191 GCTTCAACGAGTTTGGAAGATTCAT 60.335 40.000 15.70 0.00 35.69 2.57
6590 7086 5.862924 TCAACGAGTTTGGAAGATTCATC 57.137 39.130 0.00 0.00 35.69 2.92
6592 7088 5.639506 TCAACGAGTTTGGAAGATTCATCTC 59.360 40.000 0.00 0.00 34.21 2.75
6695 7221 9.255304 GACTACTTCAGATTGGAAGATGATAAC 57.745 37.037 9.67 0.00 45.66 1.89
6710 7236 9.469807 GAAGATGATAACGTGACAGAAATATCT 57.530 33.333 0.00 0.00 35.88 1.98
6757 7283 3.857665 CGTGTTGATAGTATGACGCAACT 59.142 43.478 11.56 0.00 39.50 3.16
6758 7284 5.032220 CGTGTTGATAGTATGACGCAACTA 58.968 41.667 11.56 0.00 39.50 2.24
6759 7285 5.685954 CGTGTTGATAGTATGACGCAACTAT 59.314 40.000 11.56 0.00 40.71 2.12
6760 7286 6.198403 CGTGTTGATAGTATGACGCAACTATT 59.802 38.462 11.56 0.00 38.67 1.73
6761 7287 7.377662 CGTGTTGATAGTATGACGCAACTATTA 59.622 37.037 11.56 0.00 38.67 0.98
6762 7288 9.193133 GTGTTGATAGTATGACGCAACTATTAT 57.807 33.333 11.56 0.00 38.67 1.28
6763 7289 9.406828 TGTTGATAGTATGACGCAACTATTATC 57.593 33.333 11.56 0.00 38.67 1.75
6764 7290 9.627395 GTTGATAGTATGACGCAACTATTATCT 57.373 33.333 0.00 0.00 38.67 1.98
6787 7313 5.427378 TGCAAAGTATCTGCAAGCTACATA 58.573 37.500 0.00 0.00 46.47 2.29
6812 7338 7.834068 ATTTACGCACTATTATCTGCATAGG 57.166 36.000 0.00 0.00 32.57 2.57
6817 7343 2.501723 ACTATTATCTGCATAGGCCCCG 59.498 50.000 0.00 0.00 40.13 5.73
7095 7650 6.929049 TGAAGTTACAACATCTTGAATCGAGT 59.071 34.615 0.00 0.00 0.00 4.18
7207 7771 1.059098 ACAGCTCAGGGACATGAACA 58.941 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067295 TGATTTGCCTGTCCCTGTCT 58.933 50.000 0.00 0.00 0.00 3.41
1 2 1.168714 GTGATTTGCCTGTCCCTGTC 58.831 55.000 0.00 0.00 0.00 3.51
3 4 2.787473 TAGTGATTTGCCTGTCCCTG 57.213 50.000 0.00 0.00 0.00 4.45
4 5 2.092212 CCATAGTGATTTGCCTGTCCCT 60.092 50.000 0.00 0.00 0.00 4.20
6 7 3.281727 TCCATAGTGATTTGCCTGTCC 57.718 47.619 0.00 0.00 0.00 4.02
7 8 3.378427 GGTTCCATAGTGATTTGCCTGTC 59.622 47.826 0.00 0.00 0.00 3.51
8 9 3.356290 GGTTCCATAGTGATTTGCCTGT 58.644 45.455 0.00 0.00 0.00 4.00
9 10 2.355756 CGGTTCCATAGTGATTTGCCTG 59.644 50.000 0.00 0.00 0.00 4.85
10 11 2.238646 TCGGTTCCATAGTGATTTGCCT 59.761 45.455 0.00 0.00 0.00 4.75
11 12 2.614057 CTCGGTTCCATAGTGATTTGCC 59.386 50.000 0.00 0.00 0.00 4.52
12 13 2.614057 CCTCGGTTCCATAGTGATTTGC 59.386 50.000 0.00 0.00 0.00 3.68
13 14 4.137116 TCCTCGGTTCCATAGTGATTTG 57.863 45.455 0.00 0.00 0.00 2.32
14 15 4.837093 TTCCTCGGTTCCATAGTGATTT 57.163 40.909 0.00 0.00 0.00 2.17
15 16 5.368989 GAATTCCTCGGTTCCATAGTGATT 58.631 41.667 0.00 0.00 0.00 2.57
16 17 4.202367 GGAATTCCTCGGTTCCATAGTGAT 60.202 45.833 17.73 0.00 42.72 3.06
17 18 3.134081 GGAATTCCTCGGTTCCATAGTGA 59.866 47.826 17.73 0.00 42.72 3.41
18 19 3.118408 TGGAATTCCTCGGTTCCATAGTG 60.118 47.826 24.73 0.00 46.59 2.74
19 20 3.112263 TGGAATTCCTCGGTTCCATAGT 58.888 45.455 24.73 0.00 46.59 2.12
20 21 3.838244 TGGAATTCCTCGGTTCCATAG 57.162 47.619 24.73 0.00 46.59 2.23
24 25 2.763651 CGTGGAATTCCTCGGTTCC 58.236 57.895 31.75 5.84 45.95 3.62
30 31 4.714632 TCAAATATCCCGTGGAATTCCTC 58.285 43.478 24.73 19.86 34.34 3.71
31 32 4.788925 TCAAATATCCCGTGGAATTCCT 57.211 40.909 24.73 6.48 34.34 3.36
32 33 6.238648 AGTATCAAATATCCCGTGGAATTCC 58.761 40.000 18.17 18.17 34.34 3.01
33 34 8.095169 AGTAGTATCAAATATCCCGTGGAATTC 58.905 37.037 0.00 0.00 34.34 2.17
34 35 7.974504 AGTAGTATCAAATATCCCGTGGAATT 58.025 34.615 0.00 0.00 34.34 2.17
35 36 7.554959 AGTAGTATCAAATATCCCGTGGAAT 57.445 36.000 0.00 0.00 34.34 3.01
36 37 6.989155 AGTAGTATCAAATATCCCGTGGAA 57.011 37.500 0.00 0.00 34.34 3.53
37 38 8.660295 AATAGTAGTATCAAATATCCCGTGGA 57.340 34.615 0.00 0.00 35.55 4.02
38 39 9.798994 GTAATAGTAGTATCAAATATCCCGTGG 57.201 37.037 0.00 0.00 0.00 4.94
39 40 9.798994 GGTAATAGTAGTATCAAATATCCCGTG 57.201 37.037 0.00 0.00 0.00 4.94
40 41 9.765295 AGGTAATAGTAGTATCAAATATCCCGT 57.235 33.333 0.00 0.00 0.00 5.28
48 49 9.378551 CAGCAACAAGGTAATAGTAGTATCAAA 57.621 33.333 0.00 0.00 0.00 2.69
49 50 8.537016 ACAGCAACAAGGTAATAGTAGTATCAA 58.463 33.333 0.00 0.00 0.00 2.57
50 51 8.074613 ACAGCAACAAGGTAATAGTAGTATCA 57.925 34.615 0.00 0.00 0.00 2.15
51 52 8.943909 AACAGCAACAAGGTAATAGTAGTATC 57.056 34.615 0.00 0.00 0.00 2.24
52 53 9.162764 CAAACAGCAACAAGGTAATAGTAGTAT 57.837 33.333 0.00 0.00 0.00 2.12
53 54 7.118680 GCAAACAGCAACAAGGTAATAGTAGTA 59.881 37.037 0.00 0.00 44.79 1.82
54 55 6.072673 GCAAACAGCAACAAGGTAATAGTAGT 60.073 38.462 0.00 0.00 44.79 2.73
55 56 6.314784 GCAAACAGCAACAAGGTAATAGTAG 58.685 40.000 0.00 0.00 44.79 2.57
56 57 5.106869 CGCAAACAGCAACAAGGTAATAGTA 60.107 40.000 0.00 0.00 46.13 1.82
57 58 4.320202 CGCAAACAGCAACAAGGTAATAGT 60.320 41.667 0.00 0.00 46.13 2.12
58 59 4.083537 TCGCAAACAGCAACAAGGTAATAG 60.084 41.667 0.00 0.00 46.13 1.73
59 60 3.815962 TCGCAAACAGCAACAAGGTAATA 59.184 39.130 0.00 0.00 46.13 0.98
60 61 2.621055 TCGCAAACAGCAACAAGGTAAT 59.379 40.909 0.00 0.00 46.13 1.89
61 62 2.017782 TCGCAAACAGCAACAAGGTAA 58.982 42.857 0.00 0.00 46.13 2.85
62 63 1.669604 TCGCAAACAGCAACAAGGTA 58.330 45.000 0.00 0.00 46.13 3.08
63 64 1.032014 ATCGCAAACAGCAACAAGGT 58.968 45.000 0.00 0.00 46.13 3.50
64 65 2.138596 AATCGCAAACAGCAACAAGG 57.861 45.000 0.00 0.00 46.13 3.61
65 66 4.519191 AAAAATCGCAAACAGCAACAAG 57.481 36.364 0.00 0.00 46.13 3.16
83 84 2.821969 GCAGAATGAGAGGAGGCAAAAA 59.178 45.455 0.00 0.00 39.69 1.94
84 85 2.224843 TGCAGAATGAGAGGAGGCAAAA 60.225 45.455 0.00 0.00 39.69 2.44
85 86 1.352017 TGCAGAATGAGAGGAGGCAAA 59.648 47.619 0.00 0.00 39.69 3.68
86 87 0.986527 TGCAGAATGAGAGGAGGCAA 59.013 50.000 0.00 0.00 39.69 4.52
87 88 0.540454 CTGCAGAATGAGAGGAGGCA 59.460 55.000 8.42 0.00 39.69 4.75
88 89 0.814812 GCTGCAGAATGAGAGGAGGC 60.815 60.000 20.43 0.00 39.69 4.70
89 90 0.179051 GGCTGCAGAATGAGAGGAGG 60.179 60.000 20.43 0.00 39.69 4.30
90 91 0.831966 AGGCTGCAGAATGAGAGGAG 59.168 55.000 20.43 0.00 39.69 3.69
91 92 1.065636 CAAGGCTGCAGAATGAGAGGA 60.066 52.381 20.43 0.00 39.69 3.71
92 93 1.380524 CAAGGCTGCAGAATGAGAGG 58.619 55.000 20.43 0.00 39.69 3.69
156 158 4.530710 TTAGTTGTGAGCTTACACGGAT 57.469 40.909 11.39 0.45 42.86 4.18
172 174 9.268282 TGTATAGGAAAACAGAGGAGATTAGTT 57.732 33.333 0.00 0.00 0.00 2.24
281 314 5.120399 ACCCAATTTCGTCGAATATAGCAA 58.880 37.500 8.78 0.00 0.00 3.91
282 315 4.699637 ACCCAATTTCGTCGAATATAGCA 58.300 39.130 8.78 0.00 0.00 3.49
283 316 5.333875 GGAACCCAATTTCGTCGAATATAGC 60.334 44.000 8.78 0.00 0.00 2.97
284 317 6.224420 GGAACCCAATTTCGTCGAATATAG 57.776 41.667 8.78 0.21 0.00 1.31
302 335 6.944290 ACTTTATAATATAAAGCGGGGGAACC 59.056 38.462 24.80 0.00 42.74 3.62
303 336 7.881751 AGACTTTATAATATAAAGCGGGGGAAC 59.118 37.037 24.80 11.27 37.89 3.62
304 337 7.881232 CAGACTTTATAATATAAAGCGGGGGAA 59.119 37.037 24.80 0.00 37.89 3.97
305 338 7.391620 CAGACTTTATAATATAAAGCGGGGGA 58.608 38.462 24.80 0.00 37.89 4.81
306 339 6.598064 CCAGACTTTATAATATAAAGCGGGGG 59.402 42.308 24.80 18.70 37.89 5.40
307 340 7.333672 GTCCAGACTTTATAATATAAAGCGGGG 59.666 40.741 24.80 22.06 37.89 5.73
308 341 7.333672 GGTCCAGACTTTATAATATAAAGCGGG 59.666 40.741 24.80 23.87 37.89 6.13
309 342 7.876068 TGGTCCAGACTTTATAATATAAAGCGG 59.124 37.037 24.80 22.02 37.89 5.52
310 343 8.827177 TGGTCCAGACTTTATAATATAAAGCG 57.173 34.615 24.80 16.39 37.89 4.68
315 348 9.555727 GTGCTTTGGTCCAGACTTTATAATATA 57.444 33.333 0.00 0.00 0.00 0.86
316 349 8.052748 TGTGCTTTGGTCCAGACTTTATAATAT 58.947 33.333 0.00 0.00 0.00 1.28
317 350 7.335924 GTGTGCTTTGGTCCAGACTTTATAATA 59.664 37.037 0.00 0.00 0.00 0.98
318 351 6.151144 GTGTGCTTTGGTCCAGACTTTATAAT 59.849 38.462 0.00 0.00 0.00 1.28
319 352 5.472137 GTGTGCTTTGGTCCAGACTTTATAA 59.528 40.000 0.00 0.00 0.00 0.98
320 353 5.001232 GTGTGCTTTGGTCCAGACTTTATA 58.999 41.667 0.00 0.00 0.00 0.98
321 354 3.821033 GTGTGCTTTGGTCCAGACTTTAT 59.179 43.478 0.00 0.00 0.00 1.40
322 355 3.211045 GTGTGCTTTGGTCCAGACTTTA 58.789 45.455 0.00 0.00 0.00 1.85
323 356 2.024414 GTGTGCTTTGGTCCAGACTTT 58.976 47.619 0.00 0.00 0.00 2.66
324 357 1.064758 TGTGTGCTTTGGTCCAGACTT 60.065 47.619 0.00 0.00 0.00 3.01
325 358 0.546122 TGTGTGCTTTGGTCCAGACT 59.454 50.000 0.00 0.00 0.00 3.24
326 359 0.947244 CTGTGTGCTTTGGTCCAGAC 59.053 55.000 0.00 0.00 0.00 3.51
327 360 0.179020 CCTGTGTGCTTTGGTCCAGA 60.179 55.000 0.00 0.00 0.00 3.86
328 361 0.466189 ACCTGTGTGCTTTGGTCCAG 60.466 55.000 0.00 0.00 0.00 3.86
329 362 0.840617 TACCTGTGTGCTTTGGTCCA 59.159 50.000 0.00 0.00 34.33 4.02
330 363 1.523758 CTACCTGTGTGCTTTGGTCC 58.476 55.000 0.00 0.00 34.33 4.46
331 364 0.875059 GCTACCTGTGTGCTTTGGTC 59.125 55.000 0.00 0.00 34.33 4.02
332 365 0.182537 TGCTACCTGTGTGCTTTGGT 59.817 50.000 0.00 0.00 36.66 3.67
333 366 1.001378 GTTGCTACCTGTGTGCTTTGG 60.001 52.381 0.00 0.00 0.00 3.28
334 367 1.675483 TGTTGCTACCTGTGTGCTTTG 59.325 47.619 0.00 0.00 0.00 2.77
335 368 2.051334 TGTTGCTACCTGTGTGCTTT 57.949 45.000 0.00 0.00 0.00 3.51
336 369 1.949525 CTTGTTGCTACCTGTGTGCTT 59.050 47.619 0.00 0.00 0.00 3.91
337 370 1.597742 CTTGTTGCTACCTGTGTGCT 58.402 50.000 0.00 0.00 0.00 4.40
338 371 0.593128 CCTTGTTGCTACCTGTGTGC 59.407 55.000 0.00 0.00 0.00 4.57
339 372 1.967319 ACCTTGTTGCTACCTGTGTG 58.033 50.000 0.00 0.00 0.00 3.82
340 373 2.092646 TGAACCTTGTTGCTACCTGTGT 60.093 45.455 0.00 0.00 0.00 3.72
341 374 2.571212 TGAACCTTGTTGCTACCTGTG 58.429 47.619 0.00 0.00 0.00 3.66
342 375 2.949644 GTTGAACCTTGTTGCTACCTGT 59.050 45.455 0.00 0.00 0.00 4.00
343 376 2.032030 CGTTGAACCTTGTTGCTACCTG 60.032 50.000 0.00 0.00 0.00 4.00
344 377 2.218603 CGTTGAACCTTGTTGCTACCT 58.781 47.619 0.00 0.00 0.00 3.08
345 378 1.334689 GCGTTGAACCTTGTTGCTACC 60.335 52.381 0.00 0.00 0.00 3.18
346 379 1.659211 CGCGTTGAACCTTGTTGCTAC 60.659 52.381 0.00 0.00 0.00 3.58
347 380 0.584396 CGCGTTGAACCTTGTTGCTA 59.416 50.000 0.00 0.00 0.00 3.49
348 381 1.355210 CGCGTTGAACCTTGTTGCT 59.645 52.632 0.00 0.00 0.00 3.91
349 382 2.292916 GCGCGTTGAACCTTGTTGC 61.293 57.895 8.43 0.00 0.00 4.17
350 383 2.003443 CGCGCGTTGAACCTTGTTG 61.003 57.895 24.19 0.00 0.00 3.33
351 384 2.326550 CGCGCGTTGAACCTTGTT 59.673 55.556 24.19 0.00 0.00 2.83
352 385 4.307908 GCGCGCGTTGAACCTTGT 62.308 61.111 32.35 0.00 0.00 3.16
353 386 4.306471 TGCGCGCGTTGAACCTTG 62.306 61.111 32.35 0.00 0.00 3.61
354 387 4.307908 GTGCGCGCGTTGAACCTT 62.308 61.111 32.35 0.00 0.00 3.50
357 390 4.583254 TGTGTGCGCGCGTTGAAC 62.583 61.111 32.35 22.99 0.00 3.18
358 391 4.583254 GTGTGTGCGCGCGTTGAA 62.583 61.111 32.35 12.14 0.00 2.69
365 398 3.705638 CTCTGGTGTGTGTGCGCG 61.706 66.667 0.00 0.00 0.00 6.86
366 399 1.300620 TACTCTGGTGTGTGTGCGC 60.301 57.895 0.00 0.00 0.00 6.09
367 400 0.249280 TGTACTCTGGTGTGTGTGCG 60.249 55.000 0.00 0.00 0.00 5.34
368 401 1.948104 TTGTACTCTGGTGTGTGTGC 58.052 50.000 0.00 0.00 0.00 4.57
369 402 5.525745 TGTTTATTGTACTCTGGTGTGTGTG 59.474 40.000 0.00 0.00 0.00 3.82
370 403 5.526111 GTGTTTATTGTACTCTGGTGTGTGT 59.474 40.000 0.00 0.00 0.00 3.72
371 404 5.525745 TGTGTTTATTGTACTCTGGTGTGTG 59.474 40.000 0.00 0.00 0.00 3.82
372 405 5.526111 GTGTGTTTATTGTACTCTGGTGTGT 59.474 40.000 0.00 0.00 0.00 3.72
373 406 5.049680 GGTGTGTTTATTGTACTCTGGTGTG 60.050 44.000 0.00 0.00 0.00 3.82
374 407 5.061179 GGTGTGTTTATTGTACTCTGGTGT 58.939 41.667 0.00 0.00 0.00 4.16
375 408 5.060506 TGGTGTGTTTATTGTACTCTGGTG 58.939 41.667 0.00 0.00 0.00 4.17
376 409 5.071250 TCTGGTGTGTTTATTGTACTCTGGT 59.929 40.000 0.00 0.00 0.00 4.00
377 410 5.547465 TCTGGTGTGTTTATTGTACTCTGG 58.453 41.667 0.00 0.00 0.00 3.86
378 411 6.706270 ACTTCTGGTGTGTTTATTGTACTCTG 59.294 38.462 0.00 0.00 0.00 3.35
379 412 6.827727 ACTTCTGGTGTGTTTATTGTACTCT 58.172 36.000 0.00 0.00 0.00 3.24
380 413 6.929606 AGACTTCTGGTGTGTTTATTGTACTC 59.070 38.462 0.00 0.00 0.00 2.59
381 414 6.827727 AGACTTCTGGTGTGTTTATTGTACT 58.172 36.000 0.00 0.00 0.00 2.73
382 415 7.148623 GCTAGACTTCTGGTGTGTTTATTGTAC 60.149 40.741 0.00 0.00 0.00 2.90
383 416 6.872020 GCTAGACTTCTGGTGTGTTTATTGTA 59.128 38.462 0.00 0.00 0.00 2.41
384 417 5.701290 GCTAGACTTCTGGTGTGTTTATTGT 59.299 40.000 0.00 0.00 0.00 2.71
385 418 5.934625 AGCTAGACTTCTGGTGTGTTTATTG 59.065 40.000 0.00 0.00 0.00 1.90
386 419 5.934625 CAGCTAGACTTCTGGTGTGTTTATT 59.065 40.000 0.00 0.00 0.00 1.40
387 420 5.482908 CAGCTAGACTTCTGGTGTGTTTAT 58.517 41.667 0.00 0.00 0.00 1.40
388 421 4.262463 CCAGCTAGACTTCTGGTGTGTTTA 60.262 45.833 12.79 0.00 43.66 2.01
389 422 3.495100 CCAGCTAGACTTCTGGTGTGTTT 60.495 47.826 12.79 0.00 43.66 2.83
390 423 2.037772 CCAGCTAGACTTCTGGTGTGTT 59.962 50.000 12.79 0.00 43.66 3.32
391 424 1.620819 CCAGCTAGACTTCTGGTGTGT 59.379 52.381 12.79 0.00 43.66 3.72
392 425 1.066573 CCCAGCTAGACTTCTGGTGTG 60.067 57.143 17.26 4.29 46.43 3.82
393 426 1.270907 CCCAGCTAGACTTCTGGTGT 58.729 55.000 17.26 0.00 46.43 4.16
394 427 0.539051 CCCCAGCTAGACTTCTGGTG 59.461 60.000 17.26 6.98 46.43 4.17
395 428 0.618968 CCCCCAGCTAGACTTCTGGT 60.619 60.000 17.26 0.00 46.43 4.00
397 430 1.118838 CTCCCCCAGCTAGACTTCTG 58.881 60.000 0.00 0.00 0.00 3.02
398 431 0.689412 GCTCCCCCAGCTAGACTTCT 60.689 60.000 0.00 0.00 45.83 2.85
399 432 1.826709 GCTCCCCCAGCTAGACTTC 59.173 63.158 0.00 0.00 45.83 3.01
400 433 4.058434 GCTCCCCCAGCTAGACTT 57.942 61.111 0.00 0.00 45.83 3.01
408 441 0.034186 TTATTGTGCTGCTCCCCCAG 60.034 55.000 0.00 0.00 35.93 4.45
409 442 0.630673 ATTATTGTGCTGCTCCCCCA 59.369 50.000 0.00 0.00 0.00 4.96
410 443 1.322442 GATTATTGTGCTGCTCCCCC 58.678 55.000 0.00 0.00 0.00 5.40
411 444 1.322442 GGATTATTGTGCTGCTCCCC 58.678 55.000 0.00 0.00 0.00 4.81
412 445 1.322442 GGGATTATTGTGCTGCTCCC 58.678 55.000 5.28 5.28 35.88 4.30
413 446 1.322442 GGGGATTATTGTGCTGCTCC 58.678 55.000 0.00 0.00 0.00 4.70
414 447 2.057137 TGGGGATTATTGTGCTGCTC 57.943 50.000 0.00 0.00 0.00 4.26
415 448 2.530460 TTGGGGATTATTGTGCTGCT 57.470 45.000 0.00 0.00 0.00 4.24
416 449 3.825143 ATTTGGGGATTATTGTGCTGC 57.175 42.857 0.00 0.00 0.00 5.25
417 450 5.291971 GCTTATTTGGGGATTATTGTGCTG 58.708 41.667 0.00 0.00 0.00 4.41
418 451 4.344968 GGCTTATTTGGGGATTATTGTGCT 59.655 41.667 0.00 0.00 0.00 4.40
419 452 4.631131 GGCTTATTTGGGGATTATTGTGC 58.369 43.478 0.00 0.00 0.00 4.57
420 453 4.340950 ACGGCTTATTTGGGGATTATTGTG 59.659 41.667 0.00 0.00 0.00 3.33
421 454 4.542697 ACGGCTTATTTGGGGATTATTGT 58.457 39.130 0.00 0.00 0.00 2.71
422 455 5.288804 CAACGGCTTATTTGGGGATTATTG 58.711 41.667 0.00 0.00 0.00 1.90
423 456 4.202212 GCAACGGCTTATTTGGGGATTATT 60.202 41.667 0.00 0.00 36.96 1.40
424 457 3.320826 GCAACGGCTTATTTGGGGATTAT 59.679 43.478 0.00 0.00 36.96 1.28
425 458 2.691011 GCAACGGCTTATTTGGGGATTA 59.309 45.455 0.00 0.00 36.96 1.75
426 459 1.480545 GCAACGGCTTATTTGGGGATT 59.519 47.619 0.00 0.00 36.96 3.01
427 460 1.111277 GCAACGGCTTATTTGGGGAT 58.889 50.000 0.00 0.00 36.96 3.85
428 461 2.573920 GCAACGGCTTATTTGGGGA 58.426 52.632 0.00 0.00 36.96 4.81
439 472 2.561569 ACCAGTGAATATAGCAACGGC 58.438 47.619 0.00 0.00 41.61 5.68
440 473 3.938963 ACAACCAGTGAATATAGCAACGG 59.061 43.478 0.00 0.00 0.00 4.44
441 474 5.545658 AACAACCAGTGAATATAGCAACG 57.454 39.130 0.00 0.00 0.00 4.10
442 475 7.145932 AGAAACAACCAGTGAATATAGCAAC 57.854 36.000 0.00 0.00 0.00 4.17
713 769 9.889128 AATTGAATTTTTCCACTCTCTTTTTCA 57.111 25.926 0.00 0.00 0.00 2.69
731 787 6.518493 AGATGAACAAGCACACAATTGAATT 58.482 32.000 13.59 0.00 0.00 2.17
894 972 8.837389 GTGTAGAAAGACAAATTACAGGAAACT 58.163 33.333 0.00 0.00 46.44 2.66
901 979 7.284074 TCTTGGGTGTAGAAAGACAAATTACA 58.716 34.615 0.00 0.00 0.00 2.41
1273 1358 1.743252 CTTGGCGCTTGAGGAGGTC 60.743 63.158 7.64 0.00 0.00 3.85
1341 1426 1.672881 GCACGCAGAGGCTTCATTAAT 59.327 47.619 0.00 0.00 38.10 1.40
1569 1654 8.535592 CGCTTTATTATATGATCACGATCCTTC 58.464 37.037 0.00 0.00 37.02 3.46
2068 2157 2.224378 TGAAGAGTGCCAAGAACTGAGG 60.224 50.000 0.00 0.00 0.00 3.86
2094 2183 1.022735 CTGGTCCAGAGAATGCATGC 58.977 55.000 14.26 11.82 32.44 4.06
2115 2204 2.485426 ACGCAACTGTGGATTTCTGATG 59.515 45.455 0.00 0.00 0.00 3.07
2136 2225 3.668757 CGAGTTCGACGTCCAGATTTACA 60.669 47.826 10.58 0.00 43.02 2.41
2303 2394 1.429930 TTGGGCTGTAGAGTTGGACA 58.570 50.000 0.00 0.00 0.00 4.02
3769 3996 7.382488 TGTTCTTGAAGATCTTACACTTCTTCG 59.618 37.037 8.25 0.00 45.32 3.79
3805 4032 5.123186 CCAAGCCGTGATTGTATAAGTTTCA 59.877 40.000 2.13 0.00 0.00 2.69
4482 4715 0.896226 ACTGTCTCCCTTAGGTTCGC 59.104 55.000 0.00 0.00 0.00 4.70
5374 5839 0.749649 CCTTCTCCACATCCTCCTCG 59.250 60.000 0.00 0.00 0.00 4.63
5706 6174 7.765695 ATGTCACATCCATAGTTCAAAGTTT 57.234 32.000 0.00 0.00 0.00 2.66
5909 6385 4.646492 ACACTGAAAGCCTGAAACTTTGAT 59.354 37.500 0.00 0.00 37.47 2.57
6236 6732 4.022503 GCAATCTTCTCTGCAAAACCTTCT 60.023 41.667 0.00 0.00 38.48 2.85
6495 6991 0.698818 AGACCCTCACCCATCCAAAC 59.301 55.000 0.00 0.00 0.00 2.93
6572 7068 4.764172 AGGAGATGAATCTTCCAAACTCG 58.236 43.478 9.83 0.00 37.25 4.18
6576 7072 6.209391 GGTTGAAAGGAGATGAATCTTCCAAA 59.791 38.462 9.83 0.00 37.25 3.28
6578 7074 5.222109 TGGTTGAAAGGAGATGAATCTTCCA 60.222 40.000 9.83 0.00 37.25 3.53
6580 7076 7.554118 TGTATGGTTGAAAGGAGATGAATCTTC 59.446 37.037 0.00 0.00 37.25 2.87
6581 7077 7.405292 TGTATGGTTGAAAGGAGATGAATCTT 58.595 34.615 0.00 0.00 37.25 2.40
6582 7078 6.962182 TGTATGGTTGAAAGGAGATGAATCT 58.038 36.000 0.00 0.00 40.50 2.40
6583 7079 7.814264 ATGTATGGTTGAAAGGAGATGAATC 57.186 36.000 0.00 0.00 0.00 2.52
6584 7080 7.069085 CCAATGTATGGTTGAAAGGAGATGAAT 59.931 37.037 0.00 0.00 44.85 2.57
6585 7081 6.377996 CCAATGTATGGTTGAAAGGAGATGAA 59.622 38.462 0.00 0.00 44.85 2.57
6587 7083 6.140303 CCAATGTATGGTTGAAAGGAGATG 57.860 41.667 0.00 0.00 44.85 2.90
6695 7221 9.995379 CGAACAATATAAGATATTTCTGTCACG 57.005 33.333 0.00 0.00 30.72 4.35
6787 7313 7.148407 GCCTATGCAGATAATAGTGCGTAAATT 60.148 37.037 0.00 0.00 42.96 1.82
6812 7338 1.045407 TACATCATCCACTACGGGGC 58.955 55.000 0.00 0.00 34.36 5.80
6817 7343 5.599999 AGGTCACTTACATCATCCACTAC 57.400 43.478 0.00 0.00 0.00 2.73
7068 7602 6.147164 TCGATTCAAGATGTTGTAACTTCACC 59.853 38.462 2.11 0.00 36.02 4.02
7207 7771 3.081804 CCCTTAAACTGCCACGAATCTT 58.918 45.455 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.