Multiple sequence alignment - TraesCS7D01G012100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G012100 chr7D 100.000 3294 0 0 1 3294 5299815 5303108 0.000000e+00 6083.0
1 TraesCS7D01G012100 chr7D 97.333 75 2 0 75 149 5299818 5299892 9.590000e-26 128.0
2 TraesCS7D01G012100 chr7D 97.333 75 2 0 4 78 5299889 5299963 9.590000e-26 128.0
3 TraesCS7D01G012100 chr4B 95.979 970 33 6 1 967 100832957 100833923 0.000000e+00 1570.0
4 TraesCS7D01G012100 chr4B 95.635 779 22 2 2516 3294 100834769 100835535 0.000000e+00 1240.0
5 TraesCS7D01G012100 chr4B 96.442 534 18 1 2761 3294 100837764 100838296 0.000000e+00 880.0
6 TraesCS7D01G012100 chr4B 94.195 534 30 1 2761 3294 100840551 100841083 0.000000e+00 813.0
7 TraesCS7D01G012100 chr4B 83.683 619 87 8 1706 2310 190880159 190880777 3.690000e-159 571.0
8 TraesCS7D01G012100 chr4B 97.727 220 5 0 993 1212 100833919 100834138 2.400000e-101 379.0
9 TraesCS7D01G012100 chr4B 100.000 71 0 0 8 78 100833033 100833103 7.420000e-27 132.0
10 TraesCS7D01G012100 chr4B 98.592 71 1 0 79 149 100832963 100833033 3.450000e-25 126.0
11 TraesCS7D01G012100 chr4B 94.737 38 2 0 1856 1893 636618689 636618652 3.550000e-05 60.2
12 TraesCS7D01G012100 chr6D 96.705 789 26 0 424 1212 25932806 25932018 0.000000e+00 1314.0
13 TraesCS7D01G012100 chr6D 96.528 432 10 4 1 429 25944956 25944527 0.000000e+00 710.0
14 TraesCS7D01G012100 chr6D 94.712 416 22 0 1294 1709 438885079 438885494 0.000000e+00 647.0
15 TraesCS7D01G012100 chr6D 84.808 599 54 13 79 653 426497846 426497261 4.770000e-158 568.0
16 TraesCS7D01G012100 chr6D 97.037 135 3 1 1211 1344 25930605 25930471 3.310000e-55 226.0
17 TraesCS7D01G012100 chr6D 94.253 87 5 0 81 167 128468221 128468307 2.060000e-27 134.0
18 TraesCS7D01G012100 chr6D 98.592 71 1 0 8 78 25944879 25944809 3.450000e-25 126.0
19 TraesCS7D01G012100 chr6D 92.000 75 3 2 2 76 128468216 128468287 5.820000e-18 102.0
20 TraesCS7D01G012100 chr3D 93.693 872 34 11 2325 3176 549646331 549645461 0.000000e+00 1286.0
21 TraesCS7D01G012100 chr3D 94.737 38 2 0 1856 1893 22233442 22233405 3.550000e-05 60.2
22 TraesCS7D01G012100 chr1D 92.202 872 42 12 2325 3176 489784744 489785609 0.000000e+00 1210.0
23 TraesCS7D01G012100 chr1D 77.435 421 64 19 1917 2323 59021226 59021629 4.280000e-54 222.0
24 TraesCS7D01G012100 chr1D 87.179 78 7 2 1 78 376332003 376331929 5.860000e-13 86.1
25 TraesCS7D01G012100 chr6A 90.114 880 42 13 2325 3176 291333715 291332853 0.000000e+00 1101.0
26 TraesCS7D01G012100 chr6A 93.269 416 28 0 1294 1709 587774377 587774792 6.040000e-172 614.0
27 TraesCS7D01G012100 chr5A 92.661 763 36 6 2325 3068 551471949 551471188 0.000000e+00 1081.0
28 TraesCS7D01G012100 chr5A 90.000 150 12 2 1066 1215 32403435 32403289 1.210000e-44 191.0
29 TraesCS7D01G012100 chr5A 88.050 159 15 3 1054 1212 666949948 666950102 5.610000e-43 185.0
30 TraesCS7D01G012100 chr5A 84.706 85 9 2 1855 1935 531279902 531279986 7.580000e-12 82.4
31 TraesCS7D01G012100 chr3B 96.154 468 16 1 2670 3135 461739854 461740321 0.000000e+00 763.0
32 TraesCS7D01G012100 chr3B 87.248 298 26 8 2325 2610 461735805 461736102 2.450000e-86 329.0
33 TraesCS7D01G012100 chr3B 87.288 236 8 2 853 1066 302451323 302451088 1.960000e-62 250.0
34 TraesCS7D01G012100 chr3B 91.195 159 13 1 1054 1212 302451055 302450898 7.160000e-52 215.0
35 TraesCS7D01G012100 chr3B 98.000 50 1 0 853 902 809181810 809181859 1.630000e-13 87.9
36 TraesCS7D01G012100 chr7B 91.743 545 43 2 304 848 220331565 220332107 0.000000e+00 756.0
37 TraesCS7D01G012100 chr7B 87.241 290 26 5 75 360 220331297 220331579 1.470000e-83 320.0
38 TraesCS7D01G012100 chr2D 88.170 634 59 10 1705 2326 299082191 299081562 0.000000e+00 741.0
39 TraesCS7D01G012100 chr2D 84.706 595 58 12 79 653 633853769 633854350 6.170000e-157 564.0
40 TraesCS7D01G012100 chr2A 85.571 700 72 15 172 848 657088520 657087827 0.000000e+00 706.0
41 TraesCS7D01G012100 chr2A 88.225 586 61 7 268 848 293053360 293053942 0.000000e+00 693.0
42 TraesCS7D01G012100 chr2A 91.765 255 15 6 75 325 293053110 293053362 1.880000e-92 350.0
43 TraesCS7D01G012100 chrUn 86.645 614 69 6 1706 2307 112458869 112459481 0.000000e+00 667.0
44 TraesCS7D01G012100 chr1A 87.755 588 49 12 268 848 474572845 474573416 0.000000e+00 665.0
45 TraesCS7D01G012100 chr1A 89.243 251 14 4 75 325 474572610 474572847 5.340000e-78 302.0
46 TraesCS7D01G012100 chr4D 87.956 548 45 15 79 608 44832311 44831767 7.760000e-176 627.0
47 TraesCS7D01G012100 chr4D 91.703 229 5 1 853 1067 423910743 423910971 4.130000e-79 305.0
48 TraesCS7D01G012100 chr4D 96.226 159 5 1 1054 1212 423911003 423911160 3.260000e-65 259.0
49 TraesCS7D01G012100 chr4D 96.429 84 3 0 1211 1294 423912561 423912644 4.430000e-29 139.0
50 TraesCS7D01G012100 chr6B 85.386 609 69 9 1712 2307 78463313 78462712 6.040000e-172 614.0
51 TraesCS7D01G012100 chr6B 91.587 416 35 0 1294 1709 664197580 664197995 2.850000e-160 575.0
52 TraesCS7D01G012100 chr5D 84.641 599 55 12 79 653 64304490 64305075 2.220000e-156 562.0
53 TraesCS7D01G012100 chr5D 94.615 260 13 1 2915 3173 47626338 47626597 5.120000e-108 401.0
54 TraesCS7D01G012100 chr5D 83.372 433 36 12 75 484 4270587 4271006 5.190000e-98 368.0
55 TraesCS7D01G012100 chr5D 94.737 38 2 0 1856 1893 388392594 388392631 3.550000e-05 60.2
56 TraesCS7D01G012100 chr5D 94.737 38 2 0 1856 1893 462804878 462804841 3.550000e-05 60.2
57 TraesCS7D01G012100 chr3A 85.662 551 54 13 79 608 71058773 71058227 1.030000e-154 556.0
58 TraesCS7D01G012100 chr5B 79.721 789 90 29 79 848 98948534 98949271 1.050000e-139 507.0
59 TraesCS7D01G012100 chr5B 97.619 42 0 1 1 42 98948528 98948568 1.640000e-08 71.3
60 TraesCS7D01G012100 chr1B 86.698 421 47 8 2654 3072 674477254 674477667 3.000000e-125 459.0
61 TraesCS7D01G012100 chr1B 86.066 366 30 5 2320 2666 674476850 674477213 1.120000e-99 374.0
62 TraesCS7D01G012100 chr1B 90.000 50 2 1 1847 1893 629466589 629466638 9.870000e-06 62.1
63 TraesCS7D01G012100 chr2B 89.308 159 15 2 1054 1212 713548736 713548580 7.210000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G012100 chr7D 5299815 5303108 3293 False 2113.000000 6083 98.222000 1 3294 3 chr7D.!!$F1 3293
1 TraesCS7D01G012100 chr4B 100832957 100841083 8126 False 734.285714 1570 96.938571 1 3294 7 chr4B.!!$F2 3293
2 TraesCS7D01G012100 chr4B 190880159 190880777 618 False 571.000000 571 83.683000 1706 2310 1 chr4B.!!$F1 604
3 TraesCS7D01G012100 chr6D 25930471 25932806 2335 True 770.000000 1314 96.871000 424 1344 2 chr6D.!!$R2 920
4 TraesCS7D01G012100 chr6D 426497261 426497846 585 True 568.000000 568 84.808000 79 653 1 chr6D.!!$R1 574
5 TraesCS7D01G012100 chr3D 549645461 549646331 870 True 1286.000000 1286 93.693000 2325 3176 1 chr3D.!!$R2 851
6 TraesCS7D01G012100 chr1D 489784744 489785609 865 False 1210.000000 1210 92.202000 2325 3176 1 chr1D.!!$F2 851
7 TraesCS7D01G012100 chr6A 291332853 291333715 862 True 1101.000000 1101 90.114000 2325 3176 1 chr6A.!!$R1 851
8 TraesCS7D01G012100 chr5A 551471188 551471949 761 True 1081.000000 1081 92.661000 2325 3068 1 chr5A.!!$R2 743
9 TraesCS7D01G012100 chr3B 461735805 461740321 4516 False 546.000000 763 91.701000 2325 3135 2 chr3B.!!$F2 810
10 TraesCS7D01G012100 chr7B 220331297 220332107 810 False 538.000000 756 89.492000 75 848 2 chr7B.!!$F1 773
11 TraesCS7D01G012100 chr2D 299081562 299082191 629 True 741.000000 741 88.170000 1705 2326 1 chr2D.!!$R1 621
12 TraesCS7D01G012100 chr2D 633853769 633854350 581 False 564.000000 564 84.706000 79 653 1 chr2D.!!$F1 574
13 TraesCS7D01G012100 chr2A 657087827 657088520 693 True 706.000000 706 85.571000 172 848 1 chr2A.!!$R1 676
14 TraesCS7D01G012100 chr2A 293053110 293053942 832 False 521.500000 693 89.995000 75 848 2 chr2A.!!$F1 773
15 TraesCS7D01G012100 chrUn 112458869 112459481 612 False 667.000000 667 86.645000 1706 2307 1 chrUn.!!$F1 601
16 TraesCS7D01G012100 chr1A 474572610 474573416 806 False 483.500000 665 88.499000 75 848 2 chr1A.!!$F1 773
17 TraesCS7D01G012100 chr4D 44831767 44832311 544 True 627.000000 627 87.956000 79 608 1 chr4D.!!$R1 529
18 TraesCS7D01G012100 chr4D 423910743 423912644 1901 False 234.333333 305 94.786000 853 1294 3 chr4D.!!$F1 441
19 TraesCS7D01G012100 chr6B 78462712 78463313 601 True 614.000000 614 85.386000 1712 2307 1 chr6B.!!$R1 595
20 TraesCS7D01G012100 chr5D 64304490 64305075 585 False 562.000000 562 84.641000 79 653 1 chr5D.!!$F3 574
21 TraesCS7D01G012100 chr3A 71058227 71058773 546 True 556.000000 556 85.662000 79 608 1 chr3A.!!$R1 529
22 TraesCS7D01G012100 chr5B 98948528 98949271 743 False 289.150000 507 88.670000 1 848 2 chr5B.!!$F1 847
23 TraesCS7D01G012100 chr1B 674476850 674477667 817 False 416.500000 459 86.382000 2320 3072 2 chr1B.!!$F2 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 841 0.294887 GCAGCGACGTTAGAATCACG 59.705 55.0 0.0 0.0 43.52 4.35 F
1456 3094 0.108615 GACATCACAGACGGGAGGTG 60.109 60.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 3235 0.107643 TGTGCGGTTCTTGATGTCCA 59.892 50.0 0.0 0.0 0.0 4.02 R
3209 14204 0.537828 GACCTAGCCCCTCCTCTACG 60.538 65.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 2.086610 ACACCAGGAAGCAAACCATT 57.913 45.000 0.00 0.00 0.00 3.16
167 168 5.104735 ACACCAGGAAGCAAACCATTAAAAA 60.105 36.000 0.00 0.00 0.00 1.94
366 497 5.324784 AGAAAGGAACAAAACACTTCCAC 57.675 39.130 0.00 0.00 38.81 4.02
371 502 1.745232 ACAAAACACTTCCACGCAGA 58.255 45.000 0.00 0.00 0.00 4.26
435 566 6.097696 TGAGAAGATTGTTACCGACCATATGA 59.902 38.462 3.65 0.00 0.00 2.15
665 799 0.529337 CTTCCAGTCGATCAGCGCAT 60.529 55.000 11.47 0.00 40.61 4.73
707 841 0.294887 GCAGCGACGTTAGAATCACG 59.705 55.000 0.00 0.00 43.52 4.35
767 901 1.303074 TCGTGCCGACTCCTACACT 60.303 57.895 0.00 0.00 0.00 3.55
804 939 3.497942 GGAAAAACCAGAGAGTAAGGCCA 60.498 47.826 5.01 0.00 38.79 5.36
839 974 5.241403 ACCAAATTCACCATACAGAGTCA 57.759 39.130 0.00 0.00 0.00 3.41
962 1111 3.815856 AAATGCACACATCCAAACACA 57.184 38.095 0.00 0.00 34.62 3.72
963 1112 3.815856 AATGCACACATCCAAACACAA 57.184 38.095 0.00 0.00 34.62 3.33
964 1113 3.815856 ATGCACACATCCAAACACAAA 57.184 38.095 0.00 0.00 0.00 2.83
965 1114 3.162202 TGCACACATCCAAACACAAAG 57.838 42.857 0.00 0.00 0.00 2.77
966 1115 2.495270 TGCACACATCCAAACACAAAGT 59.505 40.909 0.00 0.00 0.00 2.66
967 1116 3.696548 TGCACACATCCAAACACAAAGTA 59.303 39.130 0.00 0.00 0.00 2.24
968 1117 4.340666 TGCACACATCCAAACACAAAGTAT 59.659 37.500 0.00 0.00 0.00 2.12
969 1118 5.532779 TGCACACATCCAAACACAAAGTATA 59.467 36.000 0.00 0.00 0.00 1.47
970 1119 6.208402 TGCACACATCCAAACACAAAGTATAT 59.792 34.615 0.00 0.00 0.00 0.86
971 1120 7.391833 TGCACACATCCAAACACAAAGTATATA 59.608 33.333 0.00 0.00 0.00 0.86
972 1121 8.405531 GCACACATCCAAACACAAAGTATATAT 58.594 33.333 0.00 0.00 0.00 0.86
1010 1189 8.840321 ACATATCTAAAGTGGCAATAATGTGAC 58.160 33.333 0.00 0.00 0.00 3.67
1348 2986 3.337889 GCGTGTGCAGTTCGAGCA 61.338 61.111 1.01 0.00 42.15 4.26
1349 2987 2.849007 CGTGTGCAGTTCGAGCAG 59.151 61.111 1.01 0.00 43.63 4.24
1350 2988 1.951130 CGTGTGCAGTTCGAGCAGT 60.951 57.895 1.01 0.00 43.63 4.40
1351 2989 1.566563 GTGTGCAGTTCGAGCAGTG 59.433 57.895 1.01 0.00 43.63 3.66
1352 2990 1.595109 TGTGCAGTTCGAGCAGTGG 60.595 57.895 1.01 0.00 43.63 4.00
1353 2991 2.031012 TGCAGTTCGAGCAGTGGG 59.969 61.111 1.01 0.00 37.02 4.61
1354 2992 3.426568 GCAGTTCGAGCAGTGGGC 61.427 66.667 1.01 0.00 45.30 5.36
1355 2993 2.743928 CAGTTCGAGCAGTGGGCC 60.744 66.667 1.01 0.00 46.50 5.80
1356 2994 4.379243 AGTTCGAGCAGTGGGCCG 62.379 66.667 1.01 0.00 46.50 6.13
1357 2995 4.681978 GTTCGAGCAGTGGGCCGT 62.682 66.667 0.00 0.00 46.50 5.68
1358 2996 4.373116 TTCGAGCAGTGGGCCGTC 62.373 66.667 0.00 0.00 46.50 4.79
1383 3021 4.573162 GGGTCGACCTCGTCTTTG 57.427 61.111 32.52 0.00 40.80 2.77
1384 3022 1.737008 GGGTCGACCTCGTCTTTGC 60.737 63.158 32.52 10.15 40.80 3.68
1385 3023 1.737008 GGTCGACCTCGTCTTTGCC 60.737 63.158 27.64 0.00 40.80 4.52
1386 3024 2.087009 GTCGACCTCGTCTTTGCCG 61.087 63.158 3.51 0.00 40.80 5.69
1387 3025 2.809601 CGACCTCGTCTTTGCCGG 60.810 66.667 0.00 0.00 34.11 6.13
1388 3026 2.434359 GACCTCGTCTTTGCCGGG 60.434 66.667 2.18 0.00 0.00 5.73
1389 3027 4.699522 ACCTCGTCTTTGCCGGGC 62.700 66.667 13.32 13.32 0.00 6.13
1390 3028 4.697756 CCTCGTCTTTGCCGGGCA 62.698 66.667 19.77 19.77 36.47 5.36
1391 3029 3.423154 CTCGTCTTTGCCGGGCAC 61.423 66.667 23.78 9.41 38.71 5.01
1394 3032 4.025401 GTCTTTGCCGGGCACGTG 62.025 66.667 23.78 12.28 38.71 4.49
1404 3042 4.499023 GGCACGTGCACGCGTATG 62.499 66.667 38.60 27.77 43.83 2.39
1405 3043 3.474904 GCACGTGCACGCGTATGA 61.475 61.111 37.35 0.00 43.83 2.15
1406 3044 2.689183 CACGTGCACGCGTATGAG 59.311 61.111 37.35 15.33 43.83 2.90
1407 3045 2.086426 CACGTGCACGCGTATGAGT 61.086 57.895 37.35 14.16 43.83 3.41
1413 3051 1.419922 CACGCGTATGAGTGCAACC 59.580 57.895 13.44 0.00 39.06 3.77
1414 3052 1.005512 ACGCGTATGAGTGCAACCA 60.006 52.632 11.67 0.00 37.80 3.67
1415 3053 1.289109 ACGCGTATGAGTGCAACCAC 61.289 55.000 11.67 0.00 42.39 4.16
1416 3054 1.794222 GCGTATGAGTGCAACCACC 59.206 57.895 0.00 0.00 43.09 4.61
1417 3055 1.966493 GCGTATGAGTGCAACCACCG 61.966 60.000 0.00 0.00 43.09 4.94
1418 3056 1.358725 CGTATGAGTGCAACCACCGG 61.359 60.000 0.00 0.00 43.09 5.28
1419 3057 1.024579 GTATGAGTGCAACCACCGGG 61.025 60.000 6.32 0.00 43.09 5.73
1429 3067 2.434331 CCACCGGGTGTCCAACAT 59.566 61.111 24.70 0.00 0.00 2.71
1430 3068 1.674322 CCACCGGGTGTCCAACATC 60.674 63.158 24.70 0.00 0.00 3.06
1431 3069 1.072332 CACCGGGTGTCCAACATCA 59.928 57.895 19.15 0.00 28.66 3.07
1432 3070 0.536233 CACCGGGTGTCCAACATCAA 60.536 55.000 19.15 0.00 28.66 2.57
1433 3071 0.250727 ACCGGGTGTCCAACATCAAG 60.251 55.000 6.32 0.00 28.66 3.02
1434 3072 0.250727 CCGGGTGTCCAACATCAAGT 60.251 55.000 0.00 0.00 28.66 3.16
1435 3073 1.002659 CCGGGTGTCCAACATCAAGTA 59.997 52.381 0.00 0.00 28.66 2.24
1436 3074 2.073816 CGGGTGTCCAACATCAAGTAC 58.926 52.381 0.00 0.00 28.66 2.73
1437 3075 2.073816 GGGTGTCCAACATCAAGTACG 58.926 52.381 0.00 0.00 28.66 3.67
1438 3076 2.289195 GGGTGTCCAACATCAAGTACGA 60.289 50.000 0.00 0.00 28.66 3.43
1439 3077 2.735134 GGTGTCCAACATCAAGTACGAC 59.265 50.000 0.00 0.00 0.00 4.34
1440 3078 3.386486 GTGTCCAACATCAAGTACGACA 58.614 45.455 0.00 0.00 36.55 4.35
1441 3079 3.994392 GTGTCCAACATCAAGTACGACAT 59.006 43.478 0.00 0.00 39.29 3.06
1442 3080 4.091509 GTGTCCAACATCAAGTACGACATC 59.908 45.833 0.00 0.00 39.29 3.06
1443 3081 4.242475 GTCCAACATCAAGTACGACATCA 58.758 43.478 0.00 0.00 31.82 3.07
1444 3082 4.091509 GTCCAACATCAAGTACGACATCAC 59.908 45.833 0.00 0.00 31.82 3.06
1445 3083 3.993736 CCAACATCAAGTACGACATCACA 59.006 43.478 0.00 0.00 0.00 3.58
1446 3084 4.091945 CCAACATCAAGTACGACATCACAG 59.908 45.833 0.00 0.00 0.00 3.66
1447 3085 4.783764 ACATCAAGTACGACATCACAGA 57.216 40.909 0.00 0.00 0.00 3.41
1448 3086 4.486090 ACATCAAGTACGACATCACAGAC 58.514 43.478 0.00 0.00 0.00 3.51
1449 3087 3.197434 TCAAGTACGACATCACAGACG 57.803 47.619 0.00 0.00 0.00 4.18
1450 3088 2.095415 TCAAGTACGACATCACAGACGG 60.095 50.000 0.00 0.00 0.00 4.79
1451 3089 0.809385 AGTACGACATCACAGACGGG 59.191 55.000 0.00 0.00 0.00 5.28
1452 3090 0.806868 GTACGACATCACAGACGGGA 59.193 55.000 0.00 0.00 0.00 5.14
1453 3091 1.092348 TACGACATCACAGACGGGAG 58.908 55.000 0.00 0.00 0.00 4.30
1454 3092 1.139734 CGACATCACAGACGGGAGG 59.860 63.158 0.00 0.00 0.00 4.30
1455 3093 1.595993 CGACATCACAGACGGGAGGT 61.596 60.000 0.00 0.00 0.00 3.85
1456 3094 0.108615 GACATCACAGACGGGAGGTG 60.109 60.000 0.00 0.00 0.00 4.00
1457 3095 1.448540 CATCACAGACGGGAGGTGC 60.449 63.158 0.00 0.00 32.69 5.01
1458 3096 1.913262 ATCACAGACGGGAGGTGCA 60.913 57.895 0.00 0.00 32.69 4.57
1459 3097 1.480212 ATCACAGACGGGAGGTGCAA 61.480 55.000 0.00 0.00 32.69 4.08
1460 3098 1.669115 CACAGACGGGAGGTGCAAG 60.669 63.158 0.00 0.00 0.00 4.01
1461 3099 2.743928 CAGACGGGAGGTGCAAGC 60.744 66.667 0.00 0.00 0.00 4.01
1462 3100 4.021925 AGACGGGAGGTGCAAGCC 62.022 66.667 0.00 0.00 32.25 4.35
1495 3133 3.550992 CGCGCCCGTGTACATGAC 61.551 66.667 16.87 7.26 0.00 3.06
1496 3134 3.192922 GCGCCCGTGTACATGACC 61.193 66.667 16.87 5.84 0.00 4.02
1497 3135 2.263227 CGCCCGTGTACATGACCA 59.737 61.111 16.87 0.00 0.00 4.02
1498 3136 1.153449 CGCCCGTGTACATGACCAT 60.153 57.895 16.87 0.00 0.00 3.55
1499 3137 1.151777 CGCCCGTGTACATGACCATC 61.152 60.000 16.87 0.26 0.00 3.51
1500 3138 1.151777 GCCCGTGTACATGACCATCG 61.152 60.000 16.87 4.76 0.00 3.84
1501 3139 0.529773 CCCGTGTACATGACCATCGG 60.530 60.000 16.87 13.53 36.34 4.18
1502 3140 0.174845 CCGTGTACATGACCATCGGT 59.825 55.000 16.87 0.00 39.44 4.69
1503 3141 1.277326 CGTGTACATGACCATCGGTG 58.723 55.000 9.62 0.00 35.25 4.94
1504 3142 1.135228 CGTGTACATGACCATCGGTGA 60.135 52.381 9.62 0.00 35.25 4.02
1505 3143 2.268298 GTGTACATGACCATCGGTGAC 58.732 52.381 0.00 0.00 35.25 3.67
1517 3155 3.890674 GGTGACGGAGGCAACATC 58.109 61.111 0.00 0.00 41.41 3.06
1518 3156 2.100631 GGTGACGGAGGCAACATCG 61.101 63.158 0.00 0.00 39.57 3.84
1519 3157 1.080093 GTGACGGAGGCAACATCGA 60.080 57.895 0.00 0.00 37.81 3.59
1520 3158 1.078759 GTGACGGAGGCAACATCGAG 61.079 60.000 0.00 0.00 37.81 4.04
1521 3159 1.519455 GACGGAGGCAACATCGAGG 60.519 63.158 0.00 0.00 37.81 4.63
1522 3160 2.202932 CGGAGGCAACATCGAGGG 60.203 66.667 0.69 0.00 41.41 4.30
1523 3161 2.514824 GGAGGCAACATCGAGGGC 60.515 66.667 0.69 0.00 41.41 5.19
1524 3162 2.514824 GAGGCAACATCGAGGGCC 60.515 66.667 9.03 9.03 46.77 5.80
1526 3164 2.044946 GGCAACATCGAGGGCCTT 60.045 61.111 7.89 0.00 43.09 4.35
1527 3165 2.409870 GGCAACATCGAGGGCCTTG 61.410 63.158 15.18 15.18 43.09 3.61
1528 3166 3.056313 GCAACATCGAGGGCCTTGC 62.056 63.158 16.55 12.89 0.00 4.01
1544 3182 2.807045 GCCGACAGCGTGACAGAG 60.807 66.667 0.00 0.00 35.23 3.35
1545 3183 2.807045 CCGACAGCGTGACAGAGC 60.807 66.667 0.00 0.00 35.23 4.09
1546 3184 2.807045 CGACAGCGTGACAGAGCC 60.807 66.667 0.00 0.00 0.00 4.70
1547 3185 2.340078 GACAGCGTGACAGAGCCA 59.660 61.111 0.00 0.00 0.00 4.75
1548 3186 2.024319 GACAGCGTGACAGAGCCAC 61.024 63.158 0.00 0.00 0.00 5.01
1549 3187 2.029518 CAGCGTGACAGAGCCACA 59.970 61.111 0.00 0.00 34.36 4.17
1550 3188 1.595109 CAGCGTGACAGAGCCACAA 60.595 57.895 0.00 0.00 34.36 3.33
1551 3189 1.595382 AGCGTGACAGAGCCACAAC 60.595 57.895 0.00 0.00 34.36 3.32
1552 3190 2.607892 GCGTGACAGAGCCACAACC 61.608 63.158 0.00 0.00 34.36 3.77
1553 3191 2.310233 CGTGACAGAGCCACAACCG 61.310 63.158 0.00 0.00 34.36 4.44
1554 3192 1.069090 GTGACAGAGCCACAACCGA 59.931 57.895 0.00 0.00 34.81 4.69
1555 3193 0.946221 GTGACAGAGCCACAACCGAG 60.946 60.000 0.00 0.00 34.81 4.63
1556 3194 2.029844 GACAGAGCCACAACCGAGC 61.030 63.158 0.00 0.00 0.00 5.03
1557 3195 2.345244 CAGAGCCACAACCGAGCT 59.655 61.111 0.00 0.00 40.24 4.09
1558 3196 1.185618 ACAGAGCCACAACCGAGCTA 61.186 55.000 0.00 0.00 36.87 3.32
1559 3197 0.737715 CAGAGCCACAACCGAGCTAC 60.738 60.000 0.00 0.00 36.87 3.58
1560 3198 0.900647 AGAGCCACAACCGAGCTACT 60.901 55.000 0.00 0.00 36.87 2.57
1561 3199 0.458716 GAGCCACAACCGAGCTACTC 60.459 60.000 0.00 0.00 36.87 2.59
1579 3217 2.124942 GGCCTTCCGAGAAGCCAG 60.125 66.667 0.00 4.40 45.07 4.85
1580 3218 2.821810 GCCTTCCGAGAAGCCAGC 60.822 66.667 7.82 3.85 0.00 4.85
1581 3219 2.985456 CCTTCCGAGAAGCCAGCT 59.015 61.111 7.82 0.00 0.00 4.24
1582 3220 1.298014 CCTTCCGAGAAGCCAGCTT 59.702 57.895 4.17 4.17 39.23 3.74
1583 3221 0.322008 CCTTCCGAGAAGCCAGCTTT 60.322 55.000 6.31 0.00 36.26 3.51
1584 3222 0.801251 CTTCCGAGAAGCCAGCTTTG 59.199 55.000 6.31 0.27 36.26 2.77
1585 3223 0.606401 TTCCGAGAAGCCAGCTTTGG 60.606 55.000 6.31 9.22 36.26 3.28
1586 3224 2.042831 CCGAGAAGCCAGCTTTGGG 61.043 63.158 6.31 4.83 36.26 4.12
1593 3231 2.682494 CCAGCTTTGGGCATGCCT 60.682 61.111 34.70 12.67 44.79 4.75
1594 3232 2.288025 CCAGCTTTGGGCATGCCTT 61.288 57.895 34.70 11.92 44.79 4.35
1595 3233 1.079405 CAGCTTTGGGCATGCCTTG 60.079 57.895 34.70 21.87 44.79 3.61
1605 3243 2.876581 CATGCCTTGCTGGACATCA 58.123 52.632 0.49 0.00 38.35 3.07
1606 3244 1.179152 CATGCCTTGCTGGACATCAA 58.821 50.000 0.49 0.00 38.35 2.57
1607 3245 1.134367 CATGCCTTGCTGGACATCAAG 59.866 52.381 8.51 8.51 39.38 3.02
1608 3246 0.401356 TGCCTTGCTGGACATCAAGA 59.599 50.000 15.29 0.00 41.50 3.02
1609 3247 1.202915 TGCCTTGCTGGACATCAAGAA 60.203 47.619 15.29 3.27 41.50 2.52
1610 3248 1.200948 GCCTTGCTGGACATCAAGAAC 59.799 52.381 15.29 5.62 41.50 3.01
1611 3249 1.815003 CCTTGCTGGACATCAAGAACC 59.185 52.381 15.29 0.00 41.50 3.62
1612 3250 1.466167 CTTGCTGGACATCAAGAACCG 59.534 52.381 9.62 0.00 41.50 4.44
1613 3251 0.955428 TGCTGGACATCAAGAACCGC 60.955 55.000 0.00 0.00 0.00 5.68
1614 3252 0.955428 GCTGGACATCAAGAACCGCA 60.955 55.000 0.00 0.00 0.00 5.69
1615 3253 0.798776 CTGGACATCAAGAACCGCAC 59.201 55.000 0.00 0.00 0.00 5.34
1616 3254 0.107643 TGGACATCAAGAACCGCACA 59.892 50.000 0.00 0.00 0.00 4.57
1617 3255 0.517316 GGACATCAAGAACCGCACAC 59.483 55.000 0.00 0.00 0.00 3.82
1618 3256 1.225855 GACATCAAGAACCGCACACA 58.774 50.000 0.00 0.00 0.00 3.72
1619 3257 0.944386 ACATCAAGAACCGCACACAC 59.056 50.000 0.00 0.00 0.00 3.82
1620 3258 0.110688 CATCAAGAACCGCACACACG 60.111 55.000 0.00 0.00 0.00 4.49
1621 3259 1.841663 ATCAAGAACCGCACACACGC 61.842 55.000 0.00 0.00 0.00 5.34
1622 3260 3.276846 AAGAACCGCACACACGCC 61.277 61.111 0.00 0.00 0.00 5.68
1623 3261 3.750373 AAGAACCGCACACACGCCT 62.750 57.895 0.00 0.00 0.00 5.52
1624 3262 2.356553 GAACCGCACACACGCCTA 60.357 61.111 0.00 0.00 0.00 3.93
1625 3263 2.663852 AACCGCACACACGCCTAC 60.664 61.111 0.00 0.00 0.00 3.18
1626 3264 3.159858 AACCGCACACACGCCTACT 62.160 57.895 0.00 0.00 0.00 2.57
1627 3265 1.808531 AACCGCACACACGCCTACTA 61.809 55.000 0.00 0.00 0.00 1.82
1628 3266 1.804326 CCGCACACACGCCTACTAC 60.804 63.158 0.00 0.00 0.00 2.73
1629 3267 2.150218 CGCACACACGCCTACTACG 61.150 63.158 0.00 0.00 0.00 3.51
1630 3268 2.442188 GCACACACGCCTACTACGC 61.442 63.158 0.00 0.00 0.00 4.42
1631 3269 1.804326 CACACACGCCTACTACGCC 60.804 63.158 0.00 0.00 0.00 5.68
1632 3270 1.975407 ACACACGCCTACTACGCCT 60.975 57.895 0.00 0.00 0.00 5.52
1633 3271 1.516386 CACACGCCTACTACGCCTG 60.516 63.158 0.00 0.00 0.00 4.85
1634 3272 2.104331 CACGCCTACTACGCCTGG 59.896 66.667 0.00 0.00 0.00 4.45
1635 3273 2.362120 ACGCCTACTACGCCTGGT 60.362 61.111 0.00 0.00 0.00 4.00
1636 3274 1.077501 ACGCCTACTACGCCTGGTA 60.078 57.895 0.00 0.00 0.00 3.25
1637 3275 1.358046 CGCCTACTACGCCTGGTAC 59.642 63.158 0.00 0.00 0.00 3.34
1638 3276 1.738432 GCCTACTACGCCTGGTACC 59.262 63.158 4.43 4.43 0.00 3.34
1639 3277 2.028130 CCTACTACGCCTGGTACCG 58.972 63.158 7.57 1.95 0.00 4.02
1640 3278 1.358046 CTACTACGCCTGGTACCGC 59.642 63.158 7.57 4.44 0.00 5.68
1641 3279 1.378382 TACTACGCCTGGTACCGCA 60.378 57.895 7.57 0.00 0.00 5.69
1642 3280 0.964860 TACTACGCCTGGTACCGCAA 60.965 55.000 7.57 0.00 0.00 4.85
1643 3281 1.808390 CTACGCCTGGTACCGCAAC 60.808 63.158 7.57 0.00 0.00 4.17
1644 3282 3.629883 TACGCCTGGTACCGCAACG 62.630 63.158 7.57 10.85 0.00 4.10
1648 3286 4.728102 CTGGTACCGCAACGCCGA 62.728 66.667 7.57 0.00 0.00 5.54
1664 3302 4.754667 GACGGCGTCAAGGTCCCC 62.755 72.222 33.07 4.36 32.09 4.81
1669 3307 4.323477 CGTCAAGGTCCCCGCCAA 62.323 66.667 0.00 0.00 0.00 4.52
1670 3308 2.671963 GTCAAGGTCCCCGCCAAC 60.672 66.667 0.00 0.00 0.00 3.77
1671 3309 3.172106 TCAAGGTCCCCGCCAACA 61.172 61.111 0.00 0.00 0.00 3.33
1672 3310 2.983592 CAAGGTCCCCGCCAACAC 60.984 66.667 0.00 0.00 0.00 3.32
1673 3311 4.280019 AAGGTCCCCGCCAACACC 62.280 66.667 0.00 0.00 0.00 4.16
1698 3336 3.110447 GGTTCACCAACCGTTACTACA 57.890 47.619 0.00 0.00 43.00 2.74
1699 3337 3.667360 GGTTCACCAACCGTTACTACAT 58.333 45.455 0.00 0.00 43.00 2.29
1700 3338 3.434299 GGTTCACCAACCGTTACTACATG 59.566 47.826 0.00 0.00 43.00 3.21
1701 3339 2.690786 TCACCAACCGTTACTACATGC 58.309 47.619 0.00 0.00 0.00 4.06
1702 3340 1.735571 CACCAACCGTTACTACATGCC 59.264 52.381 0.00 0.00 0.00 4.40
1703 3341 1.339342 ACCAACCGTTACTACATGCCC 60.339 52.381 0.00 0.00 0.00 5.36
1707 3345 1.339342 ACCGTTACTACATGCCCAACC 60.339 52.381 0.00 0.00 0.00 3.77
1710 3348 2.614481 CGTTACTACATGCCCAACCAGT 60.614 50.000 0.00 0.00 0.00 4.00
1771 3409 3.669824 CGAGTACGGTCATATCCAATCCG 60.670 52.174 0.00 0.00 45.53 4.18
1855 3497 3.878778 AGACATCACCTAATTCAGCACC 58.121 45.455 0.00 0.00 0.00 5.01
1915 3563 4.326548 GTGCCTACGACAATAAGTTCAGTC 59.673 45.833 0.00 0.00 0.00 3.51
1922 3570 5.147162 CGACAATAAGTTCAGTCCAAAAGC 58.853 41.667 0.00 0.00 0.00 3.51
1932 3580 0.521291 GTCCAAAAGCAGCACGCATA 59.479 50.000 0.00 0.00 46.13 3.14
1937 3585 3.065233 CCAAAAGCAGCACGCATAGAATA 59.935 43.478 0.00 0.00 46.13 1.75
1946 3594 3.554960 GCACGCATAGAATATGTCCCAGA 60.555 47.826 0.00 0.00 0.00 3.86
1977 3627 6.417635 CCATGCATTTGGTATTTCACGTAATC 59.582 38.462 0.00 0.00 31.74 1.75
1978 3628 5.885881 TGCATTTGGTATTTCACGTAATCC 58.114 37.500 0.00 0.00 0.00 3.01
2057 3707 1.344114 GGCCATGCAACTTGAAAGGAA 59.656 47.619 0.00 0.00 0.00 3.36
2120 3772 8.328758 AGATTCAAATTAATGGTGGTCTCACTA 58.671 33.333 0.00 0.00 43.17 2.74
2140 3792 8.023021 TCACTAGTTCATAAGATAACTGGCAT 57.977 34.615 0.00 0.00 37.62 4.40
2148 3800 3.179443 AGATAACTGGCATACACACCG 57.821 47.619 0.00 0.00 0.00 4.94
2200 3859 8.777578 ACCTTAAATTCAACTCTAAACCCTTT 57.222 30.769 0.00 0.00 0.00 3.11
2313 3976 8.593492 AATAAACATCTTTTCAGTTTTCCTGC 57.407 30.769 0.00 0.00 41.25 4.85
2314 3977 4.590850 ACATCTTTTCAGTTTTCCTGCC 57.409 40.909 0.00 0.00 41.25 4.85
2323 3986 2.551459 CAGTTTTCCTGCCTCACTCTTG 59.449 50.000 0.00 0.00 33.59 3.02
2328 3991 4.431416 TTCCTGCCTCACTCTTGTTTTA 57.569 40.909 0.00 0.00 0.00 1.52
2351 4015 8.621532 TTATTGCTGTCTCACTCTTGTTTTAT 57.378 30.769 0.00 0.00 0.00 1.40
2393 4057 6.974622 GTCCAAATAGTTTACATGATTGCTGG 59.025 38.462 0.00 0.00 0.00 4.85
2445 4110 7.266905 AGAAAAGGGCTAGAATGTACCTAAA 57.733 36.000 0.00 0.00 0.00 1.85
2802 10990 3.414549 TTTCAGAACTGCGTGGAAAAC 57.585 42.857 0.00 0.00 0.00 2.43
3038 14031 7.716998 CCAGTACCTTTGATCTATTGTAGCATT 59.283 37.037 0.00 0.00 0.00 3.56
3264 14259 2.754012 ATGTGAGGAGAGGAGGAGAG 57.246 55.000 0.00 0.00 0.00 3.20
3270 14265 0.560688 GGAGAGGAGGAGAGGTGGAT 59.439 60.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 5.843019 ACCTCCATCAAAACTAGGAAGAA 57.157 39.130 0.00 0.00 0.00 2.52
167 168 2.368439 TCTTGTGTCTGCTGCACTTTT 58.632 42.857 0.00 0.00 37.70 2.27
366 497 5.712217 TCCATTTTAAGTATCGTTCTGCG 57.288 39.130 0.00 0.00 43.01 5.18
371 502 4.941263 TGCTGCTCCATTTTAAGTATCGTT 59.059 37.500 0.00 0.00 0.00 3.85
378 509 3.256558 GCCTTTGCTGCTCCATTTTAAG 58.743 45.455 0.00 0.00 33.53 1.85
435 566 2.738743 CATTCACCTTAATGCAGGGGT 58.261 47.619 0.00 0.00 38.67 4.95
665 799 2.171659 TCCCTTCGCAAGCATACCAATA 59.828 45.455 0.00 0.00 37.18 1.90
767 901 4.276431 GGTTTTTCCTTCCACGACAACATA 59.724 41.667 0.00 0.00 0.00 2.29
804 939 5.336451 GGTGAATTTGGTAGCTTTCGGAATT 60.336 40.000 0.00 0.00 0.00 2.17
839 974 9.139734 AGATGCTTCATGTTGGTGAATATAATT 57.860 29.630 2.07 0.00 37.47 1.40
916 1065 2.097466 GCCATGGTCCAACATTCTTACG 59.903 50.000 14.67 0.00 0.00 3.18
973 1122 9.338622 GCCACTTTAGATATGTTAATTGGTAGT 57.661 33.333 8.95 0.00 0.00 2.73
974 1123 9.337396 TGCCACTTTAGATATGTTAATTGGTAG 57.663 33.333 8.95 0.00 0.00 3.18
975 1124 9.688091 TTGCCACTTTAGATATGTTAATTGGTA 57.312 29.630 8.95 3.28 0.00 3.25
976 1125 8.588290 TTGCCACTTTAGATATGTTAATTGGT 57.412 30.769 8.95 0.00 0.00 3.67
983 1132 9.407380 TCACATTATTGCCACTTTAGATATGTT 57.593 29.630 0.00 0.00 0.00 2.71
984 1133 8.840321 GTCACATTATTGCCACTTTAGATATGT 58.160 33.333 0.00 0.00 0.00 2.29
985 1134 8.839343 TGTCACATTATTGCCACTTTAGATATG 58.161 33.333 0.00 0.00 0.00 1.78
986 1135 8.978874 TGTCACATTATTGCCACTTTAGATAT 57.021 30.769 0.00 0.00 0.00 1.63
987 1136 8.839343 CATGTCACATTATTGCCACTTTAGATA 58.161 33.333 0.00 0.00 0.00 1.98
988 1137 7.557358 TCATGTCACATTATTGCCACTTTAGAT 59.443 33.333 0.00 0.00 0.00 1.98
989 1138 6.883756 TCATGTCACATTATTGCCACTTTAGA 59.116 34.615 0.00 0.00 0.00 2.10
990 1139 7.087409 TCATGTCACATTATTGCCACTTTAG 57.913 36.000 0.00 0.00 0.00 1.85
991 1140 7.459795 TTCATGTCACATTATTGCCACTTTA 57.540 32.000 0.00 0.00 0.00 1.85
1132 1355 6.035327 GCAAATTCTGATGCACCAAATACTTC 59.965 38.462 0.00 0.00 42.12 3.01
1202 1425 8.888579 AGTGCACGTTTTAGCTATCTTAATAT 57.111 30.769 12.01 0.00 0.00 1.28
1212 1435 2.287915 CACAAGAGTGCACGTTTTAGCT 59.712 45.455 12.01 0.00 39.21 3.32
1213 1436 2.639751 CACAAGAGTGCACGTTTTAGC 58.360 47.619 12.01 0.00 39.21 3.09
1322 2959 4.377708 TGCACACGCATCGGCTCT 62.378 61.111 0.00 0.00 45.36 4.09
1340 2978 4.681978 ACGGCCCACTGCTCGAAC 62.682 66.667 0.00 0.00 40.92 3.95
1359 2997 4.131088 GAGGTCGACCCTGGCGTC 62.131 72.222 30.82 16.73 46.51 5.19
1362 3000 4.131088 GACGAGGTCGACCCTGGC 62.131 72.222 30.82 21.74 46.51 4.85
1363 3001 1.533469 AAAGACGAGGTCGACCCTGG 61.533 60.000 30.82 21.34 46.51 4.45
1364 3002 0.388649 CAAAGACGAGGTCGACCCTG 60.389 60.000 30.82 24.41 46.51 4.45
1366 3004 1.737008 GCAAAGACGAGGTCGACCC 60.737 63.158 30.82 20.28 43.02 4.46
1367 3005 1.737008 GGCAAAGACGAGGTCGACC 60.737 63.158 27.67 27.67 43.02 4.79
1368 3006 2.087009 CGGCAAAGACGAGGTCGAC 61.087 63.158 7.13 7.13 43.02 4.20
1369 3007 2.257371 CGGCAAAGACGAGGTCGA 59.743 61.111 6.35 0.00 43.02 4.20
1370 3008 2.809601 CCGGCAAAGACGAGGTCG 60.810 66.667 0.00 0.00 46.33 4.79
1371 3009 2.434359 CCCGGCAAAGACGAGGTC 60.434 66.667 0.00 0.00 35.20 3.85
1372 3010 4.699522 GCCCGGCAAAGACGAGGT 62.700 66.667 3.91 0.00 35.20 3.85
1373 3011 4.697756 TGCCCGGCAAAGACGAGG 62.698 66.667 10.50 0.00 35.20 4.63
1374 3012 3.423154 GTGCCCGGCAAAGACGAG 61.423 66.667 15.39 0.00 41.47 4.18
1377 3015 4.025401 CACGTGCCCGGCAAAGAC 62.025 66.667 15.39 0.00 41.47 3.01
1391 3029 2.689183 CACTCATACGCGTGCACG 59.311 61.111 34.01 34.01 43.27 5.34
1395 3033 1.288419 TGGTTGCACTCATACGCGTG 61.288 55.000 24.59 7.50 0.00 5.34
1396 3034 1.005512 TGGTTGCACTCATACGCGT 60.006 52.632 19.17 19.17 0.00 6.01
1397 3035 1.419922 GTGGTTGCACTCATACGCG 59.580 57.895 3.53 3.53 0.00 6.01
1398 3036 1.794222 GGTGGTTGCACTCATACGC 59.206 57.895 0.00 0.00 0.00 4.42
1399 3037 1.358725 CCGGTGGTTGCACTCATACG 61.359 60.000 0.00 0.00 0.00 3.06
1400 3038 1.024579 CCCGGTGGTTGCACTCATAC 61.025 60.000 0.00 0.00 0.00 2.39
1401 3039 1.298340 CCCGGTGGTTGCACTCATA 59.702 57.895 0.00 0.00 0.00 2.15
1402 3040 2.034066 CCCGGTGGTTGCACTCAT 59.966 61.111 0.00 0.00 0.00 2.90
1403 3041 3.484806 ACCCGGTGGTTGCACTCA 61.485 61.111 0.00 0.00 44.75 3.41
1404 3042 2.978010 CACCCGGTGGTTGCACTC 60.978 66.667 9.99 0.00 44.75 3.51
1405 3043 3.767630 GACACCCGGTGGTTGCACT 62.768 63.158 21.77 0.00 44.75 4.40
1406 3044 3.284449 GACACCCGGTGGTTGCAC 61.284 66.667 21.77 2.58 44.75 4.57
1407 3045 4.572571 GGACACCCGGTGGTTGCA 62.573 66.667 21.77 0.00 44.75 4.08
1408 3046 4.572571 TGGACACCCGGTGGTTGC 62.573 66.667 21.77 7.57 44.75 4.17
1409 3047 2.190841 GTTGGACACCCGGTGGTTG 61.191 63.158 21.77 0.00 44.75 3.77
1410 3048 2.002018 ATGTTGGACACCCGGTGGTT 62.002 55.000 21.77 1.00 44.75 3.67
1412 3050 1.674322 GATGTTGGACACCCGGTGG 60.674 63.158 21.77 4.12 37.94 4.61
1413 3051 0.536233 TTGATGTTGGACACCCGGTG 60.536 55.000 16.47 16.47 39.75 4.94
1414 3052 0.250727 CTTGATGTTGGACACCCGGT 60.251 55.000 0.00 0.00 34.29 5.28
1415 3053 0.250727 ACTTGATGTTGGACACCCGG 60.251 55.000 0.00 0.00 34.29 5.73
1416 3054 2.073816 GTACTTGATGTTGGACACCCG 58.926 52.381 0.00 0.00 34.29 5.28
1417 3055 2.073816 CGTACTTGATGTTGGACACCC 58.926 52.381 0.00 0.00 0.00 4.61
1418 3056 2.735134 GTCGTACTTGATGTTGGACACC 59.265 50.000 0.00 0.00 33.04 4.16
1419 3057 3.386486 TGTCGTACTTGATGTTGGACAC 58.614 45.455 0.00 0.00 35.90 3.67
1420 3058 3.737032 TGTCGTACTTGATGTTGGACA 57.263 42.857 0.00 0.00 37.33 4.02
1421 3059 4.091509 GTGATGTCGTACTTGATGTTGGAC 59.908 45.833 0.00 0.00 33.26 4.02
1422 3060 4.242475 GTGATGTCGTACTTGATGTTGGA 58.758 43.478 0.00 0.00 0.00 3.53
1423 3061 3.993736 TGTGATGTCGTACTTGATGTTGG 59.006 43.478 0.00 0.00 0.00 3.77
1424 3062 4.923281 TCTGTGATGTCGTACTTGATGTTG 59.077 41.667 0.00 0.00 0.00 3.33
1425 3063 4.923871 GTCTGTGATGTCGTACTTGATGTT 59.076 41.667 0.00 0.00 0.00 2.71
1426 3064 4.486090 GTCTGTGATGTCGTACTTGATGT 58.514 43.478 0.00 0.00 0.00 3.06
1427 3065 3.543889 CGTCTGTGATGTCGTACTTGATG 59.456 47.826 0.00 0.00 0.00 3.07
1428 3066 3.427638 CCGTCTGTGATGTCGTACTTGAT 60.428 47.826 0.00 0.00 0.00 2.57
1429 3067 2.095415 CCGTCTGTGATGTCGTACTTGA 60.095 50.000 0.00 0.00 0.00 3.02
1430 3068 2.251040 CCGTCTGTGATGTCGTACTTG 58.749 52.381 0.00 0.00 0.00 3.16
1431 3069 1.201647 CCCGTCTGTGATGTCGTACTT 59.798 52.381 0.00 0.00 0.00 2.24
1432 3070 0.809385 CCCGTCTGTGATGTCGTACT 59.191 55.000 0.00 0.00 0.00 2.73
1433 3071 0.806868 TCCCGTCTGTGATGTCGTAC 59.193 55.000 0.00 0.00 0.00 3.67
1434 3072 1.092348 CTCCCGTCTGTGATGTCGTA 58.908 55.000 0.00 0.00 0.00 3.43
1435 3073 1.595993 CCTCCCGTCTGTGATGTCGT 61.596 60.000 0.00 0.00 0.00 4.34
1436 3074 1.139734 CCTCCCGTCTGTGATGTCG 59.860 63.158 0.00 0.00 0.00 4.35
1437 3075 0.108615 CACCTCCCGTCTGTGATGTC 60.109 60.000 0.00 0.00 31.66 3.06
1438 3076 1.975327 CACCTCCCGTCTGTGATGT 59.025 57.895 0.00 0.00 31.66 3.06
1439 3077 1.448540 GCACCTCCCGTCTGTGATG 60.449 63.158 0.00 0.00 31.66 3.07
1440 3078 1.480212 TTGCACCTCCCGTCTGTGAT 61.480 55.000 0.00 0.00 31.66 3.06
1441 3079 2.099652 CTTGCACCTCCCGTCTGTGA 62.100 60.000 0.00 0.00 31.66 3.58
1442 3080 1.669115 CTTGCACCTCCCGTCTGTG 60.669 63.158 0.00 0.00 0.00 3.66
1443 3081 2.743718 CTTGCACCTCCCGTCTGT 59.256 61.111 0.00 0.00 0.00 3.41
1444 3082 2.743928 GCTTGCACCTCCCGTCTG 60.744 66.667 0.00 0.00 0.00 3.51
1445 3083 4.021925 GGCTTGCACCTCCCGTCT 62.022 66.667 0.00 0.00 0.00 4.18
1478 3116 3.550992 GTCATGTACACGGGCGCG 61.551 66.667 22.69 22.69 0.00 6.86
1479 3117 3.192922 GGTCATGTACACGGGCGC 61.193 66.667 0.00 0.00 0.00 6.53
1480 3118 1.151777 GATGGTCATGTACACGGGCG 61.152 60.000 0.00 0.00 0.00 6.13
1481 3119 1.151777 CGATGGTCATGTACACGGGC 61.152 60.000 0.00 0.00 0.00 6.13
1482 3120 0.529773 CCGATGGTCATGTACACGGG 60.530 60.000 10.15 0.00 37.26 5.28
1483 3121 0.174845 ACCGATGGTCATGTACACGG 59.825 55.000 15.02 15.02 42.39 4.94
1484 3122 1.135228 TCACCGATGGTCATGTACACG 60.135 52.381 0.00 0.00 31.02 4.49
1485 3123 2.268298 GTCACCGATGGTCATGTACAC 58.732 52.381 0.00 0.00 31.02 2.90
1486 3124 1.135228 CGTCACCGATGGTCATGTACA 60.135 52.381 0.00 0.00 31.02 2.90
1487 3125 1.556564 CGTCACCGATGGTCATGTAC 58.443 55.000 0.00 0.00 31.02 2.90
1488 3126 0.458260 CCGTCACCGATGGTCATGTA 59.542 55.000 0.00 0.00 34.27 2.29
1489 3127 1.218047 CCGTCACCGATGGTCATGT 59.782 57.895 0.00 0.00 34.27 3.21
1490 3128 0.528466 CTCCGTCACCGATGGTCATG 60.528 60.000 2.29 0.00 39.55 3.07
1491 3129 1.676678 CCTCCGTCACCGATGGTCAT 61.677 60.000 2.29 0.00 39.55 3.06
1492 3130 2.348104 CCTCCGTCACCGATGGTCA 61.348 63.158 2.29 0.00 39.55 4.02
1493 3131 2.494918 CCTCCGTCACCGATGGTC 59.505 66.667 2.29 0.00 39.55 4.02
1494 3132 3.771160 GCCTCCGTCACCGATGGT 61.771 66.667 2.29 0.00 39.55 3.55
1495 3133 3.309436 TTGCCTCCGTCACCGATGG 62.309 63.158 0.00 0.00 39.89 3.51
1496 3134 2.100631 GTTGCCTCCGTCACCGATG 61.101 63.158 0.00 0.00 35.63 3.84
1497 3135 1.899437 ATGTTGCCTCCGTCACCGAT 61.899 55.000 0.00 0.00 35.63 4.18
1498 3136 2.501223 GATGTTGCCTCCGTCACCGA 62.501 60.000 0.00 0.00 35.63 4.69
1499 3137 2.047274 ATGTTGCCTCCGTCACCG 60.047 61.111 0.00 0.00 0.00 4.94
1500 3138 2.100631 CGATGTTGCCTCCGTCACC 61.101 63.158 0.00 0.00 0.00 4.02
1501 3139 1.078759 CTCGATGTTGCCTCCGTCAC 61.079 60.000 0.00 0.00 0.00 3.67
1502 3140 1.215382 CTCGATGTTGCCTCCGTCA 59.785 57.895 0.00 0.00 0.00 4.35
1503 3141 1.519455 CCTCGATGTTGCCTCCGTC 60.519 63.158 0.00 0.00 0.00 4.79
1504 3142 2.579201 CCTCGATGTTGCCTCCGT 59.421 61.111 0.00 0.00 0.00 4.69
1505 3143 2.202932 CCCTCGATGTTGCCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1506 3144 2.514824 GCCCTCGATGTTGCCTCC 60.515 66.667 0.00 0.00 0.00 4.30
1507 3145 2.514824 GGCCCTCGATGTTGCCTC 60.515 66.667 0.00 0.00 40.77 4.70
1509 3147 2.044946 AAGGCCCTCGATGTTGCC 60.045 61.111 0.00 6.55 44.35 4.52
1510 3148 3.056313 GCAAGGCCCTCGATGTTGC 62.056 63.158 7.74 7.74 37.00 4.17
1511 3149 2.409870 GGCAAGGCCCTCGATGTTG 61.410 63.158 0.00 0.00 44.06 3.33
1512 3150 2.044946 GGCAAGGCCCTCGATGTT 60.045 61.111 0.00 0.00 44.06 2.71
1523 3161 3.414700 GTCACGCTGTCGGCAAGG 61.415 66.667 4.16 0.00 41.91 3.61
1524 3162 2.661537 TGTCACGCTGTCGGCAAG 60.662 61.111 4.16 0.00 41.91 4.01
1525 3163 2.661537 CTGTCACGCTGTCGGCAA 60.662 61.111 4.16 0.00 41.91 4.52
1526 3164 3.558099 CTCTGTCACGCTGTCGGCA 62.558 63.158 4.16 0.00 41.91 5.69
1527 3165 2.807045 CTCTGTCACGCTGTCGGC 60.807 66.667 0.00 0.00 40.69 5.54
1528 3166 2.807045 GCTCTGTCACGCTGTCGG 60.807 66.667 0.00 0.00 40.69 4.79
1529 3167 2.807045 GGCTCTGTCACGCTGTCG 60.807 66.667 0.00 0.00 42.43 4.35
1530 3168 2.024319 GTGGCTCTGTCACGCTGTC 61.024 63.158 0.00 0.00 0.00 3.51
1531 3169 2.029666 GTGGCTCTGTCACGCTGT 59.970 61.111 0.00 0.00 0.00 4.40
1532 3170 1.595109 TTGTGGCTCTGTCACGCTG 60.595 57.895 0.00 0.00 41.53 5.18
1533 3171 1.595382 GTTGTGGCTCTGTCACGCT 60.595 57.895 0.00 0.00 41.53 5.07
1534 3172 2.607892 GGTTGTGGCTCTGTCACGC 61.608 63.158 0.00 0.00 41.53 5.34
1535 3173 2.310233 CGGTTGTGGCTCTGTCACG 61.310 63.158 0.00 0.00 41.53 4.35
1536 3174 0.946221 CTCGGTTGTGGCTCTGTCAC 60.946 60.000 0.00 0.00 38.79 3.67
1537 3175 1.367471 CTCGGTTGTGGCTCTGTCA 59.633 57.895 0.00 0.00 0.00 3.58
1538 3176 2.029844 GCTCGGTTGTGGCTCTGTC 61.030 63.158 0.00 0.00 0.00 3.51
1539 3177 1.185618 TAGCTCGGTTGTGGCTCTGT 61.186 55.000 0.00 0.00 37.50 3.41
1540 3178 0.737715 GTAGCTCGGTTGTGGCTCTG 60.738 60.000 0.00 0.00 37.50 3.35
1541 3179 0.900647 AGTAGCTCGGTTGTGGCTCT 60.901 55.000 0.00 0.00 37.50 4.09
1542 3180 0.458716 GAGTAGCTCGGTTGTGGCTC 60.459 60.000 0.00 0.00 37.50 4.70
1543 3181 1.592223 GAGTAGCTCGGTTGTGGCT 59.408 57.895 0.00 0.00 39.74 4.75
1544 3182 4.187056 GAGTAGCTCGGTTGTGGC 57.813 61.111 0.00 0.00 0.00 5.01
1562 3200 2.124942 CTGGCTTCTCGGAAGGCC 60.125 66.667 26.03 19.89 44.31 5.19
1563 3201 2.811542 AAGCTGGCTTCTCGGAAGGC 62.812 60.000 23.91 23.91 42.45 4.35
1564 3202 0.322008 AAAGCTGGCTTCTCGGAAGG 60.322 55.000 8.33 1.68 34.84 3.46
1565 3203 0.801251 CAAAGCTGGCTTCTCGGAAG 59.199 55.000 8.33 8.72 34.84 3.46
1566 3204 0.606401 CCAAAGCTGGCTTCTCGGAA 60.606 55.000 8.33 0.00 35.39 4.30
1567 3205 1.003355 CCAAAGCTGGCTTCTCGGA 60.003 57.895 8.33 0.00 35.39 4.55
1568 3206 2.042831 CCCAAAGCTGGCTTCTCGG 61.043 63.158 8.33 9.24 41.99 4.63
1569 3207 2.694760 GCCCAAAGCTGGCTTCTCG 61.695 63.158 8.33 1.13 45.70 4.04
1570 3208 3.282271 GCCCAAAGCTGGCTTCTC 58.718 61.111 8.33 0.00 45.70 2.87
1576 3214 2.288025 AAGGCATGCCCAAAGCTGG 61.288 57.895 33.14 0.00 44.23 4.85
1577 3215 1.079405 CAAGGCATGCCCAAAGCTG 60.079 57.895 33.14 16.17 44.23 4.24
1578 3216 3.384348 CAAGGCATGCCCAAAGCT 58.616 55.556 33.14 10.96 44.23 3.74
1587 3225 1.179152 TTGATGTCCAGCAAGGCATG 58.821 50.000 0.00 0.00 35.27 4.06
1588 3226 3.675995 TTGATGTCCAGCAAGGCAT 57.324 47.368 0.00 0.00 37.01 4.40
1593 3231 1.522668 CGGTTCTTGATGTCCAGCAA 58.477 50.000 0.00 0.00 35.24 3.91
1594 3232 0.955428 GCGGTTCTTGATGTCCAGCA 60.955 55.000 0.00 0.00 0.00 4.41
1595 3233 0.955428 TGCGGTTCTTGATGTCCAGC 60.955 55.000 0.00 0.00 0.00 4.85
1596 3234 0.798776 GTGCGGTTCTTGATGTCCAG 59.201 55.000 0.00 0.00 0.00 3.86
1597 3235 0.107643 TGTGCGGTTCTTGATGTCCA 59.892 50.000 0.00 0.00 0.00 4.02
1598 3236 0.517316 GTGTGCGGTTCTTGATGTCC 59.483 55.000 0.00 0.00 0.00 4.02
1599 3237 1.069906 GTGTGTGCGGTTCTTGATGTC 60.070 52.381 0.00 0.00 0.00 3.06
1600 3238 0.944386 GTGTGTGCGGTTCTTGATGT 59.056 50.000 0.00 0.00 0.00 3.06
1601 3239 0.110688 CGTGTGTGCGGTTCTTGATG 60.111 55.000 0.00 0.00 0.00 3.07
1602 3240 1.841663 GCGTGTGTGCGGTTCTTGAT 61.842 55.000 0.00 0.00 0.00 2.57
1603 3241 2.530497 GCGTGTGTGCGGTTCTTGA 61.530 57.895 0.00 0.00 0.00 3.02
1604 3242 2.052237 GCGTGTGTGCGGTTCTTG 60.052 61.111 0.00 0.00 0.00 3.02
1605 3243 2.372040 TAGGCGTGTGTGCGGTTCTT 62.372 55.000 0.00 0.00 35.06 2.52
1606 3244 2.863346 TAGGCGTGTGTGCGGTTCT 61.863 57.895 0.00 0.00 35.06 3.01
1607 3245 2.356553 TAGGCGTGTGTGCGGTTC 60.357 61.111 0.00 0.00 35.06 3.62
1608 3246 1.808531 TAGTAGGCGTGTGTGCGGTT 61.809 55.000 0.00 0.00 35.06 4.44
1609 3247 2.270257 TAGTAGGCGTGTGTGCGGT 61.270 57.895 0.00 0.00 35.06 5.68
1610 3248 1.804326 GTAGTAGGCGTGTGTGCGG 60.804 63.158 0.00 0.00 35.06 5.69
1611 3249 2.150218 CGTAGTAGGCGTGTGTGCG 61.150 63.158 0.00 0.00 35.06 5.34
1612 3250 2.442188 GCGTAGTAGGCGTGTGTGC 61.442 63.158 0.00 0.00 0.00 4.57
1613 3251 1.804326 GGCGTAGTAGGCGTGTGTG 60.804 63.158 8.64 0.00 0.00 3.82
1614 3252 1.975407 AGGCGTAGTAGGCGTGTGT 60.975 57.895 9.09 0.00 41.99 3.72
1615 3253 1.516386 CAGGCGTAGTAGGCGTGTG 60.516 63.158 22.87 11.15 39.24 3.82
1616 3254 2.707849 CCAGGCGTAGTAGGCGTGT 61.708 63.158 26.64 6.89 41.53 4.49
1617 3255 1.378882 TACCAGGCGTAGTAGGCGTG 61.379 60.000 23.77 23.77 42.38 5.34
1618 3256 1.077501 TACCAGGCGTAGTAGGCGT 60.078 57.895 8.64 6.49 41.99 5.68
1619 3257 1.358046 GTACCAGGCGTAGTAGGCG 59.642 63.158 8.64 0.00 41.99 5.52
1620 3258 1.738432 GGTACCAGGCGTAGTAGGC 59.262 63.158 7.15 6.28 0.00 3.93
1621 3259 2.028130 CGGTACCAGGCGTAGTAGG 58.972 63.158 13.54 0.00 0.00 3.18
1622 3260 1.358046 GCGGTACCAGGCGTAGTAG 59.642 63.158 13.54 0.00 0.00 2.57
1623 3261 0.964860 TTGCGGTACCAGGCGTAGTA 60.965 55.000 13.54 0.00 0.00 1.82
1624 3262 2.277591 TTGCGGTACCAGGCGTAGT 61.278 57.895 13.54 0.00 0.00 2.73
1625 3263 1.808390 GTTGCGGTACCAGGCGTAG 60.808 63.158 13.54 0.00 0.00 3.51
1626 3264 2.262292 GTTGCGGTACCAGGCGTA 59.738 61.111 13.54 0.00 0.00 4.42
1631 3269 4.728102 TCGGCGTTGCGGTACCAG 62.728 66.667 13.54 6.04 0.00 4.00
1679 3317 3.120442 GCATGTAGTAACGGTTGGTGAAC 60.120 47.826 3.07 0.00 0.00 3.18
1680 3318 3.068560 GCATGTAGTAACGGTTGGTGAA 58.931 45.455 3.07 0.00 0.00 3.18
1681 3319 2.613474 GGCATGTAGTAACGGTTGGTGA 60.613 50.000 3.07 0.00 0.00 4.02
1682 3320 1.735571 GGCATGTAGTAACGGTTGGTG 59.264 52.381 3.07 0.00 0.00 4.17
1683 3321 1.339342 GGGCATGTAGTAACGGTTGGT 60.339 52.381 3.07 0.00 0.00 3.67
1684 3322 1.339247 TGGGCATGTAGTAACGGTTGG 60.339 52.381 3.07 0.00 0.00 3.77
1685 3323 2.102070 TGGGCATGTAGTAACGGTTG 57.898 50.000 3.07 0.00 0.00 3.77
1686 3324 2.429478 GTTGGGCATGTAGTAACGGTT 58.571 47.619 0.00 0.00 0.00 4.44
1687 3325 1.339342 GGTTGGGCATGTAGTAACGGT 60.339 52.381 0.00 0.00 0.00 4.83
1688 3326 1.339247 TGGTTGGGCATGTAGTAACGG 60.339 52.381 0.00 0.00 0.00 4.44
1689 3327 2.006888 CTGGTTGGGCATGTAGTAACG 58.993 52.381 0.00 0.00 0.00 3.18
1690 3328 3.067684 ACTGGTTGGGCATGTAGTAAC 57.932 47.619 0.00 0.00 0.00 2.50
1691 3329 3.799432 AACTGGTTGGGCATGTAGTAA 57.201 42.857 0.00 0.00 0.00 2.24
1692 3330 3.199071 CCTAACTGGTTGGGCATGTAGTA 59.801 47.826 3.07 0.00 34.44 1.82
1693 3331 2.026262 CCTAACTGGTTGGGCATGTAGT 60.026 50.000 3.07 0.00 34.44 2.73
1694 3332 2.238646 TCCTAACTGGTTGGGCATGTAG 59.761 50.000 10.41 0.00 40.55 2.74
1695 3333 2.270858 TCCTAACTGGTTGGGCATGTA 58.729 47.619 10.41 0.00 40.55 2.29
1696 3334 1.072266 TCCTAACTGGTTGGGCATGT 58.928 50.000 10.41 0.00 40.55 3.21
1697 3335 2.214376 TTCCTAACTGGTTGGGCATG 57.786 50.000 10.41 0.00 40.55 4.06
1698 3336 3.099141 CAATTCCTAACTGGTTGGGCAT 58.901 45.455 10.41 3.50 40.55 4.40
1699 3337 2.524306 CAATTCCTAACTGGTTGGGCA 58.476 47.619 10.41 1.24 40.55 5.36
1700 3338 1.204704 GCAATTCCTAACTGGTTGGGC 59.795 52.381 10.41 0.00 40.55 5.36
1701 3339 2.493278 CTGCAATTCCTAACTGGTTGGG 59.507 50.000 9.19 9.19 41.91 4.12
1702 3340 2.094545 GCTGCAATTCCTAACTGGTTGG 60.095 50.000 0.00 0.00 37.07 3.77
1703 3341 2.821969 AGCTGCAATTCCTAACTGGTTG 59.178 45.455 1.02 0.00 37.07 3.77
1707 3345 2.872370 GCAAGCTGCAATTCCTAACTG 58.128 47.619 1.02 0.00 44.26 3.16
1756 3394 6.045072 TGTATTACCGGATTGGATATGACC 57.955 41.667 9.46 0.00 42.00 4.02
1771 3409 3.598019 TGTCCCGTTGACTGTATTACC 57.402 47.619 4.27 0.00 44.75 2.85
1915 3563 0.804364 TCTATGCGTGCTGCTTTTGG 59.196 50.000 0.00 0.00 46.63 3.28
1922 3570 2.738846 GGGACATATTCTATGCGTGCTG 59.261 50.000 0.00 0.00 0.00 4.41
1932 3580 6.595682 CATGGTTAGTTCTGGGACATATTCT 58.404 40.000 0.00 0.00 38.20 2.40
1937 3585 2.308570 TGCATGGTTAGTTCTGGGACAT 59.691 45.455 0.00 0.00 38.20 3.06
1972 3622 6.480320 AGTGCTTTTGATCTATGTCGGATTAC 59.520 38.462 0.00 0.00 0.00 1.89
1977 3627 6.851222 ATTAGTGCTTTTGATCTATGTCGG 57.149 37.500 0.00 0.00 0.00 4.79
1978 3628 8.491152 CCTAATTAGTGCTTTTGATCTATGTCG 58.509 37.037 11.50 0.00 0.00 4.35
2023 3673 6.987992 AGTTGCATGGCCATTTCAATAATTAG 59.012 34.615 24.83 9.48 0.00 1.73
2032 3682 2.747396 TCAAGTTGCATGGCCATTTC 57.253 45.000 17.92 11.74 0.00 2.17
2099 3751 7.390440 TGAACTAGTGAGACCACCATTAATTTG 59.610 37.037 0.00 0.00 44.22 2.32
2120 3772 7.495934 GTGTGTATGCCAGTTATCTTATGAACT 59.504 37.037 0.00 0.00 36.31 3.01
2140 3792 2.158871 AGGAAGAAAGTTGCGGTGTGTA 60.159 45.455 0.00 0.00 0.00 2.90
2148 3800 9.262358 CTACCAGTAATATAGGAAGAAAGTTGC 57.738 37.037 0.00 0.00 0.00 4.17
2200 3859 3.840078 TGGAGTCTCATTGAGGAATGTCA 59.160 43.478 13.59 3.28 40.09 3.58
2310 3973 4.217118 AGCAATAAAACAAGAGTGAGGCAG 59.783 41.667 0.00 0.00 0.00 4.85
2311 3974 4.022935 CAGCAATAAAACAAGAGTGAGGCA 60.023 41.667 0.00 0.00 0.00 4.75
2313 3976 5.471456 AGACAGCAATAAAACAAGAGTGAGG 59.529 40.000 0.00 0.00 0.00 3.86
2314 3977 6.203530 TGAGACAGCAATAAAACAAGAGTGAG 59.796 38.462 0.00 0.00 0.00 3.51
2323 3986 6.305693 ACAAGAGTGAGACAGCAATAAAAC 57.694 37.500 0.00 0.00 0.00 2.43
2328 3991 7.229306 TGAATAAAACAAGAGTGAGACAGCAAT 59.771 33.333 0.00 0.00 0.00 3.56
2351 4015 1.270839 GGACCAAGTAGCAGCAGTGAA 60.271 52.381 0.00 0.00 0.00 3.18
2445 4110 5.405935 TCATACATATTATGCAGTCCGCT 57.594 39.130 3.52 0.00 43.06 5.52
2802 10990 7.703298 TGCTGAACATCTTTCATTTTCTTTG 57.297 32.000 0.00 0.00 0.00 2.77
3038 14031 3.356639 CTCCGAGCAAGCGCCACTA 62.357 63.158 2.29 0.00 39.83 2.74
3209 14204 0.537828 GACCTAGCCCCTCCTCTACG 60.538 65.000 0.00 0.00 0.00 3.51
3264 14259 3.120321 TGTACACACACTTCATCCACC 57.880 47.619 0.00 0.00 0.00 4.61
3270 14265 5.364778 ACTAAGCATTGTACACACACTTCA 58.635 37.500 0.00 0.00 33.30 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.