Multiple sequence alignment - TraesCS7D01G011600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G011600 chr7D 100.000 7198 0 0 1 7198 5171179 5163982 0.000000e+00 13293.0
1 TraesCS7D01G011600 chr7D 81.707 246 23 11 6013 6241 5158668 5158428 1.230000e-42 185.0
2 TraesCS7D01G011600 chr7A 91.234 6240 331 102 78 6233 6501400 6495293 0.000000e+00 8294.0
3 TraesCS7D01G011600 chr7A 92.344 640 35 6 2812 3449 6493478 6492851 0.000000e+00 898.0
4 TraesCS7D01G011600 chr7A 92.308 364 26 2 2891 3253 6341162 6341524 3.850000e-142 516.0
5 TraesCS7D01G011600 chr7A 88.688 221 20 2 3237 3453 6342244 6342463 1.540000e-66 265.0
6 TraesCS7D01G011600 chr7A 77.303 304 45 13 2549 2839 692620988 692621280 2.690000e-34 158.0
7 TraesCS7D01G011600 chr4A 94.749 3352 126 29 2891 6220 737409622 737412945 0.000000e+00 5169.0
8 TraesCS7D01G011600 chr4A 88.180 2022 140 43 914 2898 737407628 737409587 0.000000e+00 2318.0
9 TraesCS7D01G011600 chr4A 85.786 401 32 10 1926 2316 737465130 737464745 1.120000e-107 401.0
10 TraesCS7D01G011600 chr4A 77.409 301 47 12 2549 2839 13218108 13218397 7.470000e-35 159.0
11 TraesCS7D01G011600 chr4A 84.298 121 12 3 6111 6228 737432086 737432202 2.120000e-20 111.0
12 TraesCS7D01G011600 chr4A 85.227 88 12 1 2017 2103 738072329 738072242 9.950000e-14 89.8
13 TraesCS7D01G011600 chr7B 95.730 890 23 3 6242 7119 354381721 354382607 0.000000e+00 1419.0
14 TraesCS7D01G011600 chr7B 97.738 221 3 1 6242 6460 354386564 354386784 5.270000e-101 379.0
15 TraesCS7D01G011600 chr1B 95.730 890 23 3 6242 7119 31273428 31272542 0.000000e+00 1419.0
16 TraesCS7D01G011600 chr1B 93.553 729 31 4 6403 7119 305007657 305006933 0.000000e+00 1072.0
17 TraesCS7D01G011600 chr1B 77.667 300 50 10 2549 2839 179864974 179865265 4.470000e-37 167.0
18 TraesCS7D01G011600 chr5D 95.511 891 24 4 6241 7119 448445414 448444528 0.000000e+00 1410.0
19 TraesCS7D01G011600 chr5D 98.174 219 2 1 6242 6458 448440578 448440360 1.470000e-101 381.0
20 TraesCS7D01G011600 chr4B 95.506 890 25 3 6242 7119 630093289 630094175 0.000000e+00 1408.0
21 TraesCS7D01G011600 chr4B 97.727 220 3 1 6242 6459 630097094 630097313 1.900000e-100 377.0
22 TraesCS7D01G011600 chr3D 95.281 890 26 4 6242 7119 177342126 177343011 0.000000e+00 1397.0
23 TraesCS7D01G011600 chr3D 78.723 282 44 9 2566 2839 593323908 593324181 2.670000e-39 174.0
24 TraesCS7D01G011600 chr3A 94.118 884 29 4 6238 7119 523310159 523311021 0.000000e+00 1323.0
25 TraesCS7D01G011600 chr5B 79.756 410 70 8 6708 7112 140954137 140954538 1.180000e-72 285.0
26 TraesCS7D01G011600 chr5A 79.707 409 72 7 6708 7112 375247368 375246967 1.180000e-72 285.0
27 TraesCS7D01G011600 chr3B 86.250 240 26 4 5085 5324 795253126 795252894 3.330000e-63 254.0
28 TraesCS7D01G011600 chr6B 78.667 300 47 10 2549 2839 93451386 93451677 4.440000e-42 183.0
29 TraesCS7D01G011600 chr6D 78.369 282 45 9 2566 2839 376855369 376855096 1.240000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G011600 chr7D 5163982 5171179 7197 True 13293.0 13293 100.0000 1 7198 1 chr7D.!!$R2 7197
1 TraesCS7D01G011600 chr7A 6492851 6501400 8549 True 4596.0 8294 91.7890 78 6233 2 chr7A.!!$R1 6155
2 TraesCS7D01G011600 chr7A 6341162 6342463 1301 False 390.5 516 90.4980 2891 3453 2 chr7A.!!$F2 562
3 TraesCS7D01G011600 chr4A 737407628 737412945 5317 False 3743.5 5169 91.4645 914 6220 2 chr4A.!!$F3 5306
4 TraesCS7D01G011600 chr7B 354381721 354386784 5063 False 899.0 1419 96.7340 6242 7119 2 chr7B.!!$F1 877
5 TraesCS7D01G011600 chr1B 31272542 31273428 886 True 1419.0 1419 95.7300 6242 7119 1 chr1B.!!$R1 877
6 TraesCS7D01G011600 chr1B 305006933 305007657 724 True 1072.0 1072 93.5530 6403 7119 1 chr1B.!!$R2 716
7 TraesCS7D01G011600 chr5D 448440360 448445414 5054 True 895.5 1410 96.8425 6241 7119 2 chr5D.!!$R1 878
8 TraesCS7D01G011600 chr4B 630093289 630097313 4024 False 892.5 1408 96.6165 6242 7119 2 chr4B.!!$F1 877
9 TraesCS7D01G011600 chr3D 177342126 177343011 885 False 1397.0 1397 95.2810 6242 7119 1 chr3D.!!$F1 877
10 TraesCS7D01G011600 chr3A 523310159 523311021 862 False 1323.0 1323 94.1180 6238 7119 1 chr3A.!!$F1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.027586 AAACGAGCACACAAGCGTTC 59.972 50.000 0.00 0.00 44.99 3.95 F
46 47 0.030638 GCACACAAGCGTTCAATGGT 59.969 50.000 0.00 0.00 0.00 3.55 F
241 242 0.101219 TCATCACAGATCGACGCAGG 59.899 55.000 0.00 0.00 0.00 4.85 F
1634 1690 0.167908 TTGGTTGATGCGAACGATGC 59.832 50.000 0.00 0.00 0.00 3.91 F
2086 2151 0.033405 ATCAGCCATGGCAAGCTCTT 60.033 50.000 37.18 13.31 44.88 2.85 F
2625 2693 0.539986 TATTCTGACTTCGGTGGGCC 59.460 55.000 0.00 0.00 0.00 5.80 F
2889 2960 1.063070 TTCAAGTGGGGCAGGTACCA 61.063 55.000 15.94 0.00 0.00 3.25 F
3646 4502 1.428912 TCAAAACCCCAATCTGAGCCT 59.571 47.619 0.00 0.00 0.00 4.58 F
4982 5843 2.035961 TCGCCAGTAAGATATGGACAGC 59.964 50.000 0.00 0.00 39.02 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 1094 0.030101 GAATCGAGAGTGGAGGCGAG 59.970 60.000 0.00 0.00 36.12 5.03 R
1411 1466 0.036483 CGGGGTGTGTGTGATCATCA 60.036 55.000 0.00 0.00 0.00 3.07 R
1816 1876 0.107410 AAGATGCCGCGGGAATACAA 60.107 50.000 27.18 0.00 0.00 2.41 R
3047 3161 2.832643 TTACCTCGGTCATGGTAGGA 57.167 50.000 9.58 0.00 39.61 2.94 R
3849 4705 1.420532 AAGCGGTACCTGTTTGGGGA 61.421 55.000 10.90 0.00 41.11 4.81 R
4380 5237 3.253432 GGTTTGCAGTAACCTGAGGAAAG 59.747 47.826 4.99 0.00 43.44 2.62 R
4877 5738 4.741676 GCCTGCATATTAAACAGCAATCAC 59.258 41.667 0.00 0.00 36.44 3.06 R
5564 6431 0.900182 TCTTCTCAGCTGCTCCGGAA 60.900 55.000 9.47 7.19 0.00 4.30 R
6222 7120 0.103208 AGCTACAGGCACATAGTCGC 59.897 55.000 0.00 0.00 44.79 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.476243 TTTCTTTACCAGATGTAAACGAGC 57.524 37.500 0.00 0.00 42.94 5.03
29 30 5.142061 TCTTTACCAGATGTAAACGAGCA 57.858 39.130 0.00 0.00 42.94 4.26
30 31 4.927425 TCTTTACCAGATGTAAACGAGCAC 59.073 41.667 0.00 0.00 42.94 4.40
31 32 2.831685 ACCAGATGTAAACGAGCACA 57.168 45.000 0.00 0.00 0.00 4.57
32 33 2.413837 ACCAGATGTAAACGAGCACAC 58.586 47.619 0.00 0.00 0.00 3.82
33 34 2.224185 ACCAGATGTAAACGAGCACACA 60.224 45.455 0.00 0.00 0.00 3.72
34 35 2.805671 CCAGATGTAAACGAGCACACAA 59.194 45.455 0.00 0.00 0.00 3.33
35 36 3.120546 CCAGATGTAAACGAGCACACAAG 60.121 47.826 0.00 0.00 0.00 3.16
36 37 2.480419 AGATGTAAACGAGCACACAAGC 59.520 45.455 0.00 0.00 0.00 4.01
37 38 0.579630 TGTAAACGAGCACACAAGCG 59.420 50.000 0.00 0.00 40.15 4.68
38 39 0.580104 GTAAACGAGCACACAAGCGT 59.420 50.000 0.00 0.00 40.15 5.07
39 40 3.808036 AACGAGCACACAAGCGTT 58.192 50.000 0.00 0.00 41.52 4.84
40 41 0.027586 AAACGAGCACACAAGCGTTC 59.972 50.000 0.00 0.00 44.99 3.95
41 42 1.087202 AACGAGCACACAAGCGTTCA 61.087 50.000 0.00 0.00 42.53 3.18
42 43 1.087202 ACGAGCACACAAGCGTTCAA 61.087 50.000 0.00 0.00 40.15 2.69
43 44 0.235665 CGAGCACACAAGCGTTCAAT 59.764 50.000 0.00 0.00 40.15 2.57
44 45 1.678360 GAGCACACAAGCGTTCAATG 58.322 50.000 0.00 0.00 40.15 2.82
45 46 0.311790 AGCACACAAGCGTTCAATGG 59.688 50.000 0.00 0.00 40.15 3.16
46 47 0.030638 GCACACAAGCGTTCAATGGT 59.969 50.000 0.00 0.00 0.00 3.55
47 48 1.265635 GCACACAAGCGTTCAATGGTA 59.734 47.619 0.00 0.00 0.00 3.25
48 49 2.095263 GCACACAAGCGTTCAATGGTAT 60.095 45.455 0.00 0.00 0.00 2.73
49 50 3.747193 CACACAAGCGTTCAATGGTATC 58.253 45.455 0.00 0.00 0.00 2.24
50 51 3.436704 CACACAAGCGTTCAATGGTATCT 59.563 43.478 0.00 0.00 0.00 1.98
51 52 4.629634 CACACAAGCGTTCAATGGTATCTA 59.370 41.667 0.00 0.00 0.00 1.98
52 53 4.870426 ACACAAGCGTTCAATGGTATCTAG 59.130 41.667 0.00 0.00 0.00 2.43
53 54 4.870426 CACAAGCGTTCAATGGTATCTAGT 59.130 41.667 0.00 0.00 0.00 2.57
54 55 6.040247 CACAAGCGTTCAATGGTATCTAGTA 58.960 40.000 0.00 0.00 0.00 1.82
55 56 6.533723 CACAAGCGTTCAATGGTATCTAGTAA 59.466 38.462 0.00 0.00 0.00 2.24
56 57 6.757010 ACAAGCGTTCAATGGTATCTAGTAAG 59.243 38.462 0.00 0.00 0.00 2.34
57 58 5.290386 AGCGTTCAATGGTATCTAGTAAGC 58.710 41.667 0.00 0.00 0.00 3.09
58 59 4.148348 GCGTTCAATGGTATCTAGTAAGCG 59.852 45.833 0.00 0.00 0.00 4.68
59 60 4.148348 CGTTCAATGGTATCTAGTAAGCGC 59.852 45.833 0.00 0.00 0.00 5.92
60 61 4.252971 TCAATGGTATCTAGTAAGCGCC 57.747 45.455 2.29 0.00 0.00 6.53
61 62 3.639561 TCAATGGTATCTAGTAAGCGCCA 59.360 43.478 2.29 0.00 0.00 5.69
62 63 4.100344 TCAATGGTATCTAGTAAGCGCCAA 59.900 41.667 2.29 0.00 0.00 4.52
63 64 3.728076 TGGTATCTAGTAAGCGCCAAG 57.272 47.619 2.29 0.00 0.00 3.61
73 74 3.815396 GCGCCAAGCCTGGTTAGC 61.815 66.667 2.65 3.17 45.53 3.09
74 75 2.045926 CGCCAAGCCTGGTTAGCT 60.046 61.111 2.65 0.00 45.53 3.32
75 76 1.220749 CGCCAAGCCTGGTTAGCTA 59.779 57.895 2.65 0.00 45.53 3.32
76 77 0.811616 CGCCAAGCCTGGTTAGCTAG 60.812 60.000 2.65 0.00 45.53 3.42
77 78 1.098129 GCCAAGCCTGGTTAGCTAGC 61.098 60.000 6.62 6.62 45.53 3.42
78 79 0.253044 CCAAGCCTGGTTAGCTAGCA 59.747 55.000 18.83 0.00 40.49 3.49
79 80 1.340017 CCAAGCCTGGTTAGCTAGCAA 60.340 52.381 18.83 6.50 40.49 3.91
80 81 2.648059 CAAGCCTGGTTAGCTAGCAAT 58.352 47.619 18.83 0.00 40.49 3.56
81 82 2.338577 AGCCTGGTTAGCTAGCAATG 57.661 50.000 18.83 0.00 39.29 2.82
82 83 0.665298 GCCTGGTTAGCTAGCAATGC 59.335 55.000 18.83 0.00 33.04 3.56
94 95 6.041423 AGCTAGCAATGCTTGGTTAAAAAT 57.959 33.333 14.85 0.00 38.75 1.82
103 104 8.829612 CAATGCTTGGTTAAAAATTCTCAAGTT 58.170 29.630 0.00 0.00 35.43 2.66
119 120 5.874810 TCTCAAGTTACAAAATCTCATCCCG 59.125 40.000 0.00 0.00 0.00 5.14
121 122 3.950397 AGTTACAAAATCTCATCCCGCA 58.050 40.909 0.00 0.00 0.00 5.69
133 134 0.740737 ATCCCGCATTTGCACTTAGC 59.259 50.000 3.13 0.00 45.96 3.09
158 159 6.389906 CAACCTCATCTTGTCCCAATTTAAC 58.610 40.000 0.00 0.00 0.00 2.01
171 172 4.926832 CCCAATTTAACCACGTCATTTTCC 59.073 41.667 0.00 0.00 0.00 3.13
191 192 3.655777 TCCTTTTACCATTCTCCACACCT 59.344 43.478 0.00 0.00 0.00 4.00
197 198 2.224621 ACCATTCTCCACACCTCAACAG 60.225 50.000 0.00 0.00 0.00 3.16
198 199 2.224621 CCATTCTCCACACCTCAACAGT 60.225 50.000 0.00 0.00 0.00 3.55
203 204 3.646162 TCTCCACACCTCAACAGTATTGT 59.354 43.478 0.00 0.00 39.87 2.71
205 206 2.736721 CCACACCTCAACAGTATTGTCG 59.263 50.000 0.00 0.00 36.23 4.35
213 214 3.926527 TCAACAGTATTGTCGCATGAGTC 59.073 43.478 0.00 0.00 36.23 3.36
214 215 3.592898 ACAGTATTGTCGCATGAGTCA 57.407 42.857 0.00 0.00 29.46 3.41
222 223 3.990092 TGTCGCATGAGTCAAGTTAACT 58.010 40.909 1.12 1.12 0.00 2.24
232 233 6.997655 TGAGTCAAGTTAACTCATCACAGAT 58.002 36.000 8.95 0.00 46.15 2.90
233 234 7.093354 TGAGTCAAGTTAACTCATCACAGATC 58.907 38.462 8.95 0.00 46.15 2.75
236 237 6.034044 GTCAAGTTAACTCATCACAGATCGAC 59.966 42.308 8.95 0.00 0.00 4.20
240 241 1.202234 ACTCATCACAGATCGACGCAG 60.202 52.381 0.00 0.00 0.00 5.18
241 242 0.101219 TCATCACAGATCGACGCAGG 59.899 55.000 0.00 0.00 0.00 4.85
242 243 0.179127 CATCACAGATCGACGCAGGT 60.179 55.000 0.00 0.00 0.00 4.00
276 281 9.820725 AACATTCACATATATTGAAATGGGTTG 57.179 29.630 11.70 8.48 36.57 3.77
283 288 2.990740 TTGAAATGGGTTGGGCTACT 57.009 45.000 0.00 0.00 0.00 2.57
294 299 4.953579 GGGTTGGGCTACTGATTTGATAAA 59.046 41.667 0.00 0.00 0.00 1.40
295 300 5.420739 GGGTTGGGCTACTGATTTGATAAAA 59.579 40.000 0.00 0.00 0.00 1.52
296 301 6.071051 GGGTTGGGCTACTGATTTGATAAAAA 60.071 38.462 0.00 0.00 0.00 1.94
337 342 6.319405 TGTGATTGTGATGTTGCTTATATGCT 59.681 34.615 11.48 0.00 0.00 3.79
340 345 4.136796 TGTGATGTTGCTTATATGCTCCC 58.863 43.478 11.48 1.27 0.00 4.30
344 349 4.502105 TGTTGCTTATATGCTCCCAGAA 57.498 40.909 11.48 0.00 0.00 3.02
358 363 6.186957 TGCTCCCAGAACATGTATTGTATTT 58.813 36.000 0.00 0.00 37.68 1.40
382 387 2.098117 GCTATCCAAAGCGCAAACTGAT 59.902 45.455 11.47 7.42 31.76 2.90
383 388 3.428045 GCTATCCAAAGCGCAAACTGATT 60.428 43.478 11.47 0.00 31.76 2.57
387 395 2.545532 CCAAAGCGCAAACTGATTGGAA 60.546 45.455 11.47 0.00 39.69 3.53
391 399 3.609853 AGCGCAAACTGATTGGAAGATA 58.390 40.909 11.47 0.00 39.54 1.98
393 401 4.641989 AGCGCAAACTGATTGGAAGATAAT 59.358 37.500 11.47 0.00 39.54 1.28
397 405 7.166473 GCGCAAACTGATTGGAAGATAATAAAG 59.834 37.037 0.30 0.00 39.54 1.85
398 406 8.397906 CGCAAACTGATTGGAAGATAATAAAGA 58.602 33.333 0.00 0.00 39.54 2.52
425 433 9.783256 AAAATACTTTTGTCTTCTTGTGTACAC 57.217 29.630 19.36 19.36 0.00 2.90
426 434 5.464965 ACTTTTGTCTTCTTGTGTACACG 57.535 39.130 20.61 7.97 0.00 4.49
433 441 2.760634 TCTTGTGTACACGGATGCAT 57.239 45.000 20.61 0.00 0.00 3.96
437 445 3.810310 TGTGTACACGGATGCATCATA 57.190 42.857 27.25 11.32 0.00 2.15
454 462 8.248904 TGCATCATAGGGCATAATTAAACTTT 57.751 30.769 0.00 0.00 34.58 2.66
455 463 8.359642 TGCATCATAGGGCATAATTAAACTTTC 58.640 33.333 0.00 0.00 34.58 2.62
465 473 9.098355 GGCATAATTAAACTTTCCATTTCCTTC 57.902 33.333 0.00 0.00 0.00 3.46
473 481 5.432645 ACTTTCCATTTCCTTCTAGCTAGC 58.567 41.667 16.35 6.62 0.00 3.42
487 495 0.387622 GCTAGCGTCCACGTGTTGTA 60.388 55.000 15.65 0.00 42.22 2.41
489 497 1.917955 CTAGCGTCCACGTGTTGTATG 59.082 52.381 15.65 3.76 42.22 2.39
500 508 1.877443 GTGTTGTATGGGTCAACGCTT 59.123 47.619 12.86 0.00 46.26 4.68
501 509 2.292292 GTGTTGTATGGGTCAACGCTTT 59.708 45.455 12.86 0.00 46.26 3.51
502 510 2.292016 TGTTGTATGGGTCAACGCTTTG 59.708 45.455 0.00 0.00 45.33 2.77
503 511 0.878416 TGTATGGGTCAACGCTTTGC 59.122 50.000 0.00 0.00 32.17 3.68
504 512 1.165270 GTATGGGTCAACGCTTTGCT 58.835 50.000 0.00 0.00 32.17 3.91
505 513 1.539827 GTATGGGTCAACGCTTTGCTT 59.460 47.619 0.00 0.00 32.17 3.91
513 521 2.290641 TCAACGCTTTGCTTCCTTCTTC 59.709 45.455 0.00 0.00 32.17 2.87
517 525 5.086104 ACGCTTTGCTTCCTTCTTCTATA 57.914 39.130 0.00 0.00 0.00 1.31
528 536 8.563732 GCTTCCTTCTTCTATAGCATTTTAAGG 58.436 37.037 0.00 0.00 33.76 2.69
542 550 8.771920 AGCATTTTAAGGTGTTTTATTTAGCC 57.228 30.769 0.00 0.00 0.00 3.93
543 551 8.371699 AGCATTTTAAGGTGTTTTATTTAGCCA 58.628 29.630 0.00 0.00 0.00 4.75
552 560 7.655732 AGGTGTTTTATTTAGCCATTTGAACAC 59.344 33.333 0.00 0.00 41.95 3.32
556 564 4.806640 ATTTAGCCATTTGAACACCAGG 57.193 40.909 0.00 0.00 0.00 4.45
568 576 4.795469 TGAACACCAGGCATGAATGATAT 58.205 39.130 0.00 0.00 0.00 1.63
569 577 4.581409 TGAACACCAGGCATGAATGATATG 59.419 41.667 0.00 0.00 0.00 1.78
570 578 3.493334 ACACCAGGCATGAATGATATGG 58.507 45.455 0.00 1.52 34.41 2.74
571 579 3.117398 ACACCAGGCATGAATGATATGGT 60.117 43.478 0.00 8.06 38.84 3.55
572 580 3.893200 CACCAGGCATGAATGATATGGTT 59.107 43.478 0.00 0.00 37.32 3.67
573 581 5.072055 CACCAGGCATGAATGATATGGTTA 58.928 41.667 0.00 0.00 37.32 2.85
574 582 5.713389 CACCAGGCATGAATGATATGGTTAT 59.287 40.000 0.00 0.00 37.32 1.89
575 583 5.948162 ACCAGGCATGAATGATATGGTTATC 59.052 40.000 0.00 0.00 36.58 1.75
576 584 5.947566 CCAGGCATGAATGATATGGTTATCA 59.052 40.000 0.00 0.00 46.25 2.15
577 585 6.434965 CCAGGCATGAATGATATGGTTATCAA 59.565 38.462 0.00 0.00 45.54 2.57
580 588 8.114102 AGGCATGAATGATATGGTTATCAAGAT 58.886 33.333 0.00 0.00 45.54 2.40
611 619 5.011227 AGTCTACTTCAACTTCTCTTGGGTC 59.989 44.000 0.00 0.00 0.00 4.46
638 646 7.920151 ACGTCAACATCAATCATCAAAGAAAAA 59.080 29.630 0.00 0.00 0.00 1.94
639 647 8.209869 CGTCAACATCAATCATCAAAGAAAAAC 58.790 33.333 0.00 0.00 0.00 2.43
640 648 9.033481 GTCAACATCAATCATCAAAGAAAAACA 57.967 29.630 0.00 0.00 0.00 2.83
641 649 9.033481 TCAACATCAATCATCAAAGAAAAACAC 57.967 29.630 0.00 0.00 0.00 3.32
642 650 7.627585 ACATCAATCATCAAAGAAAAACACG 57.372 32.000 0.00 0.00 0.00 4.49
643 651 7.202526 ACATCAATCATCAAAGAAAAACACGT 58.797 30.769 0.00 0.00 0.00 4.49
644 652 8.349245 ACATCAATCATCAAAGAAAAACACGTA 58.651 29.630 0.00 0.00 0.00 3.57
645 653 8.629986 CATCAATCATCAAAGAAAAACACGTAC 58.370 33.333 0.00 0.00 0.00 3.67
646 654 7.136119 TCAATCATCAAAGAAAAACACGTACC 58.864 34.615 0.00 0.00 0.00 3.34
647 655 6.627395 ATCATCAAAGAAAAACACGTACCA 57.373 33.333 0.00 0.00 0.00 3.25
648 656 6.055231 TCATCAAAGAAAAACACGTACCAG 57.945 37.500 0.00 0.00 0.00 4.00
650 658 3.065648 TCAAAGAAAAACACGTACCAGCC 59.934 43.478 0.00 0.00 0.00 4.85
653 661 3.284617 AGAAAAACACGTACCAGCCTTT 58.715 40.909 0.00 0.00 0.00 3.11
654 662 3.066203 AGAAAAACACGTACCAGCCTTTG 59.934 43.478 0.00 0.00 0.00 2.77
673 681 5.069781 CCTTTGGAACCATTACCAGAAAACA 59.930 40.000 0.00 0.00 37.48 2.83
693 704 2.325082 CCTCAAGCGAACCCGTTGG 61.325 63.158 0.00 0.00 38.24 3.77
705 716 1.452145 CCCGTTGGTTGGTGGACTTG 61.452 60.000 0.00 0.00 0.00 3.16
722 733 8.749354 GGTGGACTTGTAAAATCAAATAATCCT 58.251 33.333 0.00 0.00 0.00 3.24
738 749 8.616076 CAAATAATCCTATGAGACCAGTCAAAC 58.384 37.037 0.00 0.00 0.00 2.93
743 754 4.878397 CCTATGAGACCAGTCAAACATTCC 59.122 45.833 0.00 0.00 0.00 3.01
744 755 2.766313 TGAGACCAGTCAAACATTCCG 58.234 47.619 0.00 0.00 0.00 4.30
746 757 3.181459 TGAGACCAGTCAAACATTCCGAA 60.181 43.478 0.00 0.00 0.00 4.30
752 763 5.301805 ACCAGTCAAACATTCCGAAAAGAAT 59.698 36.000 0.00 0.00 36.92 2.40
755 766 7.538678 CCAGTCAAACATTCCGAAAAGAATAAG 59.461 37.037 0.00 0.00 34.69 1.73
756 767 7.061094 CAGTCAAACATTCCGAAAAGAATAAGC 59.939 37.037 0.00 0.00 34.69 3.09
761 772 3.426787 TCCGAAAAGAATAAGCACCCA 57.573 42.857 0.00 0.00 0.00 4.51
763 774 2.159572 CCGAAAAGAATAAGCACCCACG 60.160 50.000 0.00 0.00 0.00 4.94
764 775 2.727916 CGAAAAGAATAAGCACCCACGC 60.728 50.000 0.00 0.00 0.00 5.34
765 776 1.173913 AAAGAATAAGCACCCACGCC 58.826 50.000 0.00 0.00 0.00 5.68
776 787 1.339610 CACCCACGCCTTTTCATTTCA 59.660 47.619 0.00 0.00 0.00 2.69
782 793 1.059942 GCCTTTTCATTTCAACGCCG 58.940 50.000 0.00 0.00 0.00 6.46
792 803 1.716826 TTCAACGCCGTTTGGACACC 61.717 55.000 0.00 0.00 37.49 4.16
793 804 2.124653 AACGCCGTTTGGACACCA 60.125 55.556 0.00 0.00 37.49 4.17
796 807 1.890041 CGCCGTTTGGACACCAAGA 60.890 57.895 3.49 0.00 44.84 3.02
799 810 0.951558 CCGTTTGGACACCAAGAAGG 59.048 55.000 3.49 5.32 44.84 3.46
800 811 0.310854 CGTTTGGACACCAAGAAGGC 59.689 55.000 3.49 0.00 44.84 4.35
804 815 0.478072 TGGACACCAAGAAGGCACAT 59.522 50.000 0.00 0.00 43.14 3.21
806 817 2.290260 TGGACACCAAGAAGGCACATAG 60.290 50.000 0.00 0.00 43.14 2.23
807 818 1.740025 GACACCAAGAAGGCACATAGC 59.260 52.381 0.00 0.00 43.14 2.97
826 837 3.360249 GCAGACACACAATGCTTTCTT 57.640 42.857 0.00 0.00 37.00 2.52
860 872 2.333926 CTGGCACTTCGACGATAAACA 58.666 47.619 0.00 0.00 0.00 2.83
861 873 2.930040 CTGGCACTTCGACGATAAACAT 59.070 45.455 0.00 0.00 0.00 2.71
862 874 4.109766 CTGGCACTTCGACGATAAACATA 58.890 43.478 0.00 0.00 0.00 2.29
863 875 3.861113 TGGCACTTCGACGATAAACATAC 59.139 43.478 0.00 0.00 0.00 2.39
864 876 3.861113 GGCACTTCGACGATAAACATACA 59.139 43.478 0.00 0.00 0.00 2.29
866 878 5.332355 GGCACTTCGACGATAAACATACATC 60.332 44.000 0.00 0.00 0.00 3.06
867 879 5.231357 GCACTTCGACGATAAACATACATCA 59.769 40.000 0.00 0.00 0.00 3.07
868 880 6.237728 GCACTTCGACGATAAACATACATCAA 60.238 38.462 0.00 0.00 0.00 2.57
869 881 7.330318 CACTTCGACGATAAACATACATCAAG 58.670 38.462 0.00 0.00 0.00 3.02
870 882 5.883328 TCGACGATAAACATACATCAAGC 57.117 39.130 0.00 0.00 0.00 4.01
871 883 4.439776 TCGACGATAAACATACATCAAGCG 59.560 41.667 0.00 0.00 0.00 4.68
876 896 8.360325 ACGATAAACATACATCAAGCGAAATA 57.640 30.769 0.00 0.00 0.00 1.40
886 906 6.503524 ACATCAAGCGAAATAAAACAGTGTT 58.496 32.000 1.64 1.64 0.00 3.32
903 923 5.183904 ACAGTGTTCCCATCTTGCTATTTTC 59.816 40.000 0.00 0.00 0.00 2.29
904 924 5.183713 CAGTGTTCCCATCTTGCTATTTTCA 59.816 40.000 0.00 0.00 0.00 2.69
906 926 6.438425 AGTGTTCCCATCTTGCTATTTTCAAT 59.562 34.615 0.00 0.00 0.00 2.57
908 928 7.276438 GTGTTCCCATCTTGCTATTTTCAATTC 59.724 37.037 0.00 0.00 0.00 2.17
961 985 4.025360 AGCATCATTTTATTCAGGTGGCA 58.975 39.130 0.00 0.00 0.00 4.92
1065 1094 4.410400 CACCAACCGCCTCCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
1066 1095 4.658786 ACCAACCGCCTCCTCCCT 62.659 66.667 0.00 0.00 0.00 4.20
1067 1096 3.787001 CCAACCGCCTCCTCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
1068 1097 4.148825 CAACCGCCTCCTCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
1076 1105 3.670629 CTCCTCCCTCGCCTCCACT 62.671 68.421 0.00 0.00 0.00 4.00
1107 1142 0.758685 CTGCGAATCTCTCCCCCTCT 60.759 60.000 0.00 0.00 0.00 3.69
1279 1330 1.679898 GTCTGTCCCTGACCCCAAG 59.320 63.158 0.00 0.00 0.00 3.61
1424 1479 3.011818 TGGCAGATTGATGATCACACAC 58.988 45.455 0.00 0.00 37.22 3.82
1444 1500 2.908940 CCCGCTCATGCATTCCCC 60.909 66.667 0.00 0.00 39.64 4.81
1467 1523 0.742281 CAGCGACCTGGATTGTGGAG 60.742 60.000 0.00 0.00 35.38 3.86
1590 1646 4.847444 GCGCTGGGGAGAGAAGCC 62.847 72.222 0.00 0.00 33.24 4.35
1634 1690 0.167908 TTGGTTGATGCGAACGATGC 59.832 50.000 0.00 0.00 0.00 3.91
1656 1716 4.618489 GCAATCGTGTGATTTTTCTTGGAG 59.382 41.667 0.00 0.00 42.14 3.86
1659 1719 2.351738 CGTGTGATTTTTCTTGGAGCCC 60.352 50.000 0.00 0.00 0.00 5.19
1661 1721 3.321968 GTGTGATTTTTCTTGGAGCCCTT 59.678 43.478 0.00 0.00 0.00 3.95
1669 1729 3.431411 TCTTGGAGCCCTTAATCCCTA 57.569 47.619 0.00 0.00 34.47 3.53
1682 1742 5.467063 CCTTAATCCCTAGCTCGTTTTCATC 59.533 44.000 0.00 0.00 0.00 2.92
1683 1743 4.487714 AATCCCTAGCTCGTTTTCATCA 57.512 40.909 0.00 0.00 0.00 3.07
1684 1744 4.696479 ATCCCTAGCTCGTTTTCATCAT 57.304 40.909 0.00 0.00 0.00 2.45
1690 1750 3.599343 AGCTCGTTTTCATCATGTGCTA 58.401 40.909 0.00 0.00 30.11 3.49
1692 1752 4.091424 GCTCGTTTTCATCATGTGCTAAC 58.909 43.478 0.00 0.00 0.00 2.34
1708 1768 1.426816 TAACGGTTGCACGCGTTTCA 61.427 50.000 10.22 8.13 36.73 2.69
1709 1769 2.023461 CGGTTGCACGCGTTTCAA 59.977 55.556 10.22 14.54 0.00 2.69
1734 1794 3.038417 GCTGCGAAGAGTGCACGT 61.038 61.111 12.01 0.00 37.44 4.49
1803 1863 1.732259 CGCTGCAAAAGAAGACGGTAT 59.268 47.619 0.00 0.00 0.00 2.73
1816 1876 1.204941 GACGGTATGTGCTCCTCTGTT 59.795 52.381 0.00 0.00 0.00 3.16
1857 1918 6.372659 TCTTGATAAGCTAGCTGTTTTTGAGG 59.627 38.462 20.16 3.95 0.00 3.86
1881 1946 0.602638 TGAAACTAGTGTGCTGCCCG 60.603 55.000 0.00 0.00 0.00 6.13
1883 1948 0.107831 AAACTAGTGTGCTGCCCGAA 59.892 50.000 0.00 0.00 0.00 4.30
1968 2033 2.281070 CCTCGGTGCTGCACAAGT 60.281 61.111 31.35 0.00 35.86 3.16
1979 2044 3.984292 GCACAAGTATGCAGCTGAC 57.016 52.632 20.43 6.95 45.39 3.51
1988 2053 3.875727 AGTATGCAGCTGACTTATGCTTG 59.124 43.478 20.43 0.00 40.62 4.01
2077 2142 5.045651 TCCTTGTATGGTATATCAGCCATGG 60.046 44.000 7.63 7.63 44.43 3.66
2086 2151 0.033405 ATCAGCCATGGCAAGCTCTT 60.033 50.000 37.18 13.31 44.88 2.85
2118 2183 1.567649 AGTGGGGTGCAATCTGATGAT 59.432 47.619 0.00 0.00 33.70 2.45
2146 2214 3.064545 CCTAAGATTTGAAAGAGGCAGCG 59.935 47.826 0.00 0.00 0.00 5.18
2161 2229 1.927895 CAGCGCCTACACCTCTAAAG 58.072 55.000 2.29 0.00 0.00 1.85
2192 2260 4.202472 ACTGCTTAACAAACCTTCTAGCCT 60.202 41.667 0.00 0.00 0.00 4.58
2241 2309 7.389330 TGCTCATTTCGTCCTCTTATGTTTAAA 59.611 33.333 0.00 0.00 0.00 1.52
2268 2336 6.871044 CTGAGATGTCAGCAATGAAAAATG 57.129 37.500 6.97 0.00 43.89 2.32
2276 2344 8.325421 TGTCAGCAATGAAAAATGCAATTAAT 57.675 26.923 0.00 0.00 44.95 1.40
2420 2488 1.267806 CCACACTAACTGGCTTGCTTG 59.732 52.381 0.00 0.00 0.00 4.01
2625 2693 0.539986 TATTCTGACTTCGGTGGGCC 59.460 55.000 0.00 0.00 0.00 5.80
2674 2742 3.379240 CAGGTATCATCACGAGAAGCAG 58.621 50.000 0.00 0.00 0.00 4.24
2776 2846 6.537453 TTGTCTTTTTCCTGAATTTCCACA 57.463 33.333 0.00 0.00 0.00 4.17
2889 2960 1.063070 TTCAAGTGGGGCAGGTACCA 61.063 55.000 15.94 0.00 0.00 3.25
3047 3161 1.573108 TCGGGATGCCTTCTCTTTCT 58.427 50.000 0.28 0.00 0.00 2.52
3053 3167 3.181459 GGATGCCTTCTCTTTCTCCTACC 60.181 52.174 0.00 0.00 0.00 3.18
3156 3271 5.107104 TGTGTTTCTTCGATTGTCTATGTGC 60.107 40.000 0.00 0.00 0.00 4.57
3163 3278 6.531594 TCTTCGATTGTCTATGTGCTGTAAAG 59.468 38.462 0.00 0.00 0.00 1.85
3166 3281 6.310467 TCGATTGTCTATGTGCTGTAAAGAAC 59.690 38.462 0.00 0.00 0.00 3.01
3309 4161 2.906897 CACAACCTGTGCCCGCTT 60.907 61.111 0.00 0.00 41.89 4.68
3519 4375 5.197451 AGTTGTTGGACTAATGACCACAAA 58.803 37.500 0.00 0.00 37.71 2.83
3646 4502 1.428912 TCAAAACCCCAATCTGAGCCT 59.571 47.619 0.00 0.00 0.00 4.58
3751 4607 2.630580 GGATCGCTTATTCTCCAGTCCT 59.369 50.000 0.00 0.00 0.00 3.85
3832 4688 6.072508 TGACTGTCCATAAGAAATGCAGTTTC 60.073 38.462 0.00 7.13 45.31 2.78
3984 4840 2.918131 GCCAGTGCGAACAAAAGTCATC 60.918 50.000 0.00 0.00 0.00 2.92
3994 4850 5.334105 CGAACAAAAGTCATCGAGTCCAAAT 60.334 40.000 0.00 0.00 37.48 2.32
4313 5170 8.402472 CAAATACGGAAGGTAAAATCAATGCTA 58.598 33.333 0.00 0.00 34.09 3.49
4333 5190 6.472016 TGCTATGGAGTTCTTCAAATGTACA 58.528 36.000 0.00 0.00 0.00 2.90
4345 5202 6.593770 TCTTCAAATGTACATGTCGCTTATGT 59.406 34.615 9.63 0.00 41.36 2.29
4380 5237 4.259930 GCAATTGACGGCATCTAATTTTGC 60.260 41.667 10.34 0.00 38.14 3.68
4565 5422 8.481974 TGGATAATTTGCTCAATCATTGTTTG 57.518 30.769 0.00 1.72 0.00 2.93
4793 5654 4.091424 GCAATGTGTTTACTTGAGCGATC 58.909 43.478 0.00 0.00 0.00 3.69
4877 5738 8.182881 GTGTACCTCTACACTACAGTATTGAAG 58.817 40.741 4.98 0.50 46.53 3.02
4982 5843 2.035961 TCGCCAGTAAGATATGGACAGC 59.964 50.000 0.00 0.00 39.02 4.40
5160 6021 4.530710 ACTAAGTTCACCGTGCTATTCA 57.469 40.909 0.00 0.00 0.00 2.57
5170 6031 6.466812 TCACCGTGCTATTCATCATATCATT 58.533 36.000 0.00 0.00 0.00 2.57
5326 6187 9.373450 AGACCGGAATATATATCTAGAATGCAT 57.627 33.333 9.46 0.00 0.00 3.96
5327 6188 9.988815 GACCGGAATATATATCTAGAATGCATT 57.011 33.333 12.83 12.83 0.00 3.56
5589 6456 1.408702 GAGCAGCTGAGAAGAGGGTAG 59.591 57.143 20.43 0.00 0.00 3.18
5713 6580 0.608130 TCTGAACCAGTGGACGATGG 59.392 55.000 18.40 0.84 42.60 3.51
5741 6609 6.758254 TCATTCCTATGCATCTATGACGAAA 58.242 36.000 0.19 0.00 0.00 3.46
5802 6670 1.152984 CATGGGTGCGGAATGGCTA 60.153 57.895 0.00 0.00 0.00 3.93
5884 6752 7.492352 TTCTCTGCTGTAAATGATGATGATG 57.508 36.000 0.00 0.00 0.00 3.07
5995 6865 4.142609 ACAAACAGATCATAGTCGGCAT 57.857 40.909 0.00 0.00 0.00 4.40
6002 6872 3.195182 AGATCATAGTCGGCATGAGATGG 59.805 47.826 0.00 0.00 35.93 3.51
6011 6881 3.646162 TCGGCATGAGATGGTTAACCTAT 59.354 43.478 24.78 16.07 36.82 2.57
6059 6929 1.611519 TTTTCCCCTGCGTTACTTGG 58.388 50.000 0.00 0.00 0.00 3.61
6091 6961 6.405278 AAATTGTTGCCTAGCTACTTTTGT 57.595 33.333 0.00 0.00 35.51 2.83
6092 6962 7.519032 AAATTGTTGCCTAGCTACTTTTGTA 57.481 32.000 0.00 0.00 35.51 2.41
6093 6963 7.703058 AATTGTTGCCTAGCTACTTTTGTAT 57.297 32.000 0.00 0.00 35.51 2.29
6139 7024 0.390124 ATTGTTGCAAGGTGCCAGTG 59.610 50.000 0.00 0.00 44.23 3.66
6178 7074 7.355332 AGTTATGTGTCGTTTATGTTGTACC 57.645 36.000 0.00 0.00 0.00 3.34
6183 7079 7.086230 TGTGTCGTTTATGTTGTACCTTTTT 57.914 32.000 0.00 0.00 0.00 1.94
6206 7104 2.214376 TTCCTAACTGGGCAATGTGG 57.786 50.000 0.00 0.00 36.20 4.17
6222 7120 1.318576 GTGGGGATGAAATAAGGGCG 58.681 55.000 0.00 0.00 0.00 6.13
6232 7130 1.865865 AATAAGGGCGCGACTATGTG 58.134 50.000 13.91 0.00 0.00 3.21
6233 7131 0.600255 ATAAGGGCGCGACTATGTGC 60.600 55.000 13.91 0.00 44.48 4.57
6237 7135 2.509336 GCGCGACTATGTGCCTGT 60.509 61.111 12.10 0.00 39.42 4.00
6238 7136 1.226859 GCGCGACTATGTGCCTGTA 60.227 57.895 12.10 0.00 39.42 2.74
6239 7137 1.209275 GCGCGACTATGTGCCTGTAG 61.209 60.000 12.10 0.00 39.42 2.74
6432 7332 2.221055 CGCTTGTTGTACCTGACTGAAC 59.779 50.000 0.00 0.00 0.00 3.18
6496 7396 2.573869 CTCTCGCTTCCGCCTTCA 59.426 61.111 0.00 0.00 0.00 3.02
6501 7401 1.153449 CGCTTCCGCCTTCACCATA 60.153 57.895 0.00 0.00 0.00 2.74
6550 7450 4.323477 CCTTTGGGGACGCCGACA 62.323 66.667 3.81 0.00 37.23 4.35
6567 7467 2.600769 ACCGTCTTCGACCTGCCT 60.601 61.111 0.00 0.00 39.71 4.75
6759 7669 6.101650 TGCATCACATTAATATCTCGTCCT 57.898 37.500 0.00 0.00 0.00 3.85
6760 7670 7.227049 TGCATCACATTAATATCTCGTCCTA 57.773 36.000 0.00 0.00 0.00 2.94
6761 7671 7.666623 TGCATCACATTAATATCTCGTCCTAA 58.333 34.615 0.00 0.00 0.00 2.69
6813 7723 2.356135 ACAATTACTCGAAATGGCGCT 58.644 42.857 7.64 0.00 0.00 5.92
6946 7856 1.338337 CTGGATCTACGCCACGATCTT 59.662 52.381 0.00 0.00 36.97 2.40
7114 8024 4.063967 CGCCCAGTACTGCCGTCA 62.064 66.667 17.86 0.00 0.00 4.35
7119 8029 1.666011 CAGTACTGCCGTCACCTGT 59.334 57.895 10.54 0.00 0.00 4.00
7121 8031 0.886563 AGTACTGCCGTCACCTGTAC 59.113 55.000 0.00 0.00 37.68 2.90
7122 8032 0.599558 GTACTGCCGTCACCTGTACA 59.400 55.000 0.00 0.00 37.48 2.90
7124 8034 0.249741 ACTGCCGTCACCTGTACAAC 60.250 55.000 0.00 0.00 0.00 3.32
7125 8035 0.033504 CTGCCGTCACCTGTACAACT 59.966 55.000 0.00 0.00 0.00 3.16
7126 8036 0.249699 TGCCGTCACCTGTACAACTG 60.250 55.000 0.00 0.00 0.00 3.16
7127 8037 0.249741 GCCGTCACCTGTACAACTGT 60.250 55.000 0.00 0.00 0.00 3.55
7128 8038 1.000060 GCCGTCACCTGTACAACTGTA 60.000 52.381 0.00 0.00 0.00 2.74
7129 8039 2.925306 GCCGTCACCTGTACAACTGTAG 60.925 54.545 0.00 0.00 0.00 2.74
7131 8041 2.030185 CGTCACCTGTACAACTGTAGCT 60.030 50.000 0.00 0.00 0.00 3.32
7134 8044 3.508793 TCACCTGTACAACTGTAGCTACC 59.491 47.826 21.01 4.37 0.00 3.18
7136 8046 3.097614 CCTGTACAACTGTAGCTACCCT 58.902 50.000 21.01 2.99 0.00 4.34
7138 8048 4.338682 CCTGTACAACTGTAGCTACCCTAG 59.661 50.000 21.01 13.92 0.00 3.02
7177 8469 4.202727 TGAGAGATACCCTAGCATAGCCTT 60.203 45.833 0.00 0.00 37.37 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.449743 GTGTGCTCGTTTACATCTGGTAAA 59.550 41.667 0.00 0.00 46.85 2.01
10 11 3.991773 GTGTGCTCGTTTACATCTGGTAA 59.008 43.478 0.00 0.00 40.15 2.85
11 12 3.006003 TGTGTGCTCGTTTACATCTGGTA 59.994 43.478 0.00 0.00 0.00 3.25
12 13 2.224185 TGTGTGCTCGTTTACATCTGGT 60.224 45.455 0.00 0.00 0.00 4.00
13 14 2.412870 TGTGTGCTCGTTTACATCTGG 58.587 47.619 0.00 0.00 0.00 3.86
14 15 3.665323 GCTTGTGTGCTCGTTTACATCTG 60.665 47.826 0.00 0.00 0.00 2.90
15 16 2.480419 GCTTGTGTGCTCGTTTACATCT 59.520 45.455 0.00 0.00 0.00 2.90
16 17 2.721797 CGCTTGTGTGCTCGTTTACATC 60.722 50.000 0.00 0.00 0.00 3.06
17 18 1.194547 CGCTTGTGTGCTCGTTTACAT 59.805 47.619 0.00 0.00 0.00 2.29
18 19 0.579630 CGCTTGTGTGCTCGTTTACA 59.420 50.000 0.00 0.00 0.00 2.41
19 20 0.580104 ACGCTTGTGTGCTCGTTTAC 59.420 50.000 0.00 0.00 0.00 2.01
20 21 1.259507 GAACGCTTGTGTGCTCGTTTA 59.740 47.619 0.00 0.00 43.91 2.01
21 22 0.027586 GAACGCTTGTGTGCTCGTTT 59.972 50.000 0.00 0.00 43.91 3.60
22 23 1.087202 TGAACGCTTGTGTGCTCGTT 61.087 50.000 0.00 0.00 46.11 3.85
23 24 1.087202 TTGAACGCTTGTGTGCTCGT 61.087 50.000 0.00 0.00 36.67 4.18
24 25 0.235665 ATTGAACGCTTGTGTGCTCG 59.764 50.000 0.00 0.00 0.00 5.03
25 26 1.664016 CCATTGAACGCTTGTGTGCTC 60.664 52.381 0.00 0.00 0.00 4.26
26 27 0.311790 CCATTGAACGCTTGTGTGCT 59.688 50.000 0.00 0.00 0.00 4.40
27 28 0.030638 ACCATTGAACGCTTGTGTGC 59.969 50.000 0.00 0.00 0.00 4.57
28 29 3.436704 AGATACCATTGAACGCTTGTGTG 59.563 43.478 0.00 0.00 0.00 3.82
29 30 3.674997 AGATACCATTGAACGCTTGTGT 58.325 40.909 0.00 0.00 0.00 3.72
30 31 4.870426 ACTAGATACCATTGAACGCTTGTG 59.130 41.667 0.00 0.00 0.00 3.33
31 32 5.086104 ACTAGATACCATTGAACGCTTGT 57.914 39.130 0.00 0.00 0.00 3.16
32 33 6.292381 GCTTACTAGATACCATTGAACGCTTG 60.292 42.308 0.00 0.00 0.00 4.01
33 34 5.753921 GCTTACTAGATACCATTGAACGCTT 59.246 40.000 0.00 0.00 0.00 4.68
34 35 5.290386 GCTTACTAGATACCATTGAACGCT 58.710 41.667 0.00 0.00 0.00 5.07
35 36 4.148348 CGCTTACTAGATACCATTGAACGC 59.852 45.833 0.00 0.00 0.00 4.84
36 37 4.148348 GCGCTTACTAGATACCATTGAACG 59.852 45.833 0.00 0.00 0.00 3.95
37 38 4.448060 GGCGCTTACTAGATACCATTGAAC 59.552 45.833 7.64 0.00 0.00 3.18
38 39 4.100344 TGGCGCTTACTAGATACCATTGAA 59.900 41.667 7.64 0.00 0.00 2.69
39 40 3.639561 TGGCGCTTACTAGATACCATTGA 59.360 43.478 7.64 0.00 0.00 2.57
40 41 3.990092 TGGCGCTTACTAGATACCATTG 58.010 45.455 7.64 0.00 0.00 2.82
41 42 4.632153 CTTGGCGCTTACTAGATACCATT 58.368 43.478 7.64 0.00 0.00 3.16
42 43 3.555168 GCTTGGCGCTTACTAGATACCAT 60.555 47.826 7.64 0.00 35.14 3.55
43 44 2.223971 GCTTGGCGCTTACTAGATACCA 60.224 50.000 7.64 0.00 35.14 3.25
44 45 2.405172 GCTTGGCGCTTACTAGATACC 58.595 52.381 7.64 0.00 35.14 2.73
45 46 2.036089 AGGCTTGGCGCTTACTAGATAC 59.964 50.000 7.64 0.00 39.13 2.24
46 47 2.035961 CAGGCTTGGCGCTTACTAGATA 59.964 50.000 7.64 0.00 39.13 1.98
47 48 1.123928 AGGCTTGGCGCTTACTAGAT 58.876 50.000 7.64 0.00 39.13 1.98
48 49 0.175760 CAGGCTTGGCGCTTACTAGA 59.824 55.000 7.64 0.00 39.13 2.43
49 50 0.811616 CCAGGCTTGGCGCTTACTAG 60.812 60.000 7.64 0.00 37.73 2.57
50 51 1.220749 CCAGGCTTGGCGCTTACTA 59.779 57.895 7.64 0.00 37.73 1.82
51 52 2.045926 CCAGGCTTGGCGCTTACT 60.046 61.111 7.64 0.00 37.73 2.24
60 61 2.113860 TTGCTAGCTAACCAGGCTTG 57.886 50.000 17.23 0.00 40.74 4.01
61 62 2.648059 CATTGCTAGCTAACCAGGCTT 58.352 47.619 17.23 0.00 40.74 4.35
62 63 1.748591 GCATTGCTAGCTAACCAGGCT 60.749 52.381 17.23 0.00 43.02 4.58
63 64 0.665298 GCATTGCTAGCTAACCAGGC 59.335 55.000 17.23 6.33 0.00 4.85
64 65 2.338577 AGCATTGCTAGCTAACCAGG 57.661 50.000 17.23 0.00 41.32 4.45
65 66 3.687572 CAAGCATTGCTAGCTAACCAG 57.312 47.619 17.23 1.93 42.53 4.00
78 79 8.962884 AACTTGAGAATTTTTAACCAAGCATT 57.037 26.923 0.00 0.00 35.67 3.56
79 80 9.476202 GTAACTTGAGAATTTTTAACCAAGCAT 57.524 29.630 0.00 0.00 35.67 3.79
80 81 8.470805 TGTAACTTGAGAATTTTTAACCAAGCA 58.529 29.630 0.00 0.00 35.67 3.91
81 82 8.865590 TGTAACTTGAGAATTTTTAACCAAGC 57.134 30.769 0.00 0.00 35.67 4.01
94 95 6.371548 CGGGATGAGATTTTGTAACTTGAGAA 59.628 38.462 0.00 0.00 0.00 2.87
103 104 4.439974 GCAAATGCGGGATGAGATTTTGTA 60.440 41.667 0.00 0.00 0.00 2.41
109 110 1.027357 GTGCAAATGCGGGATGAGAT 58.973 50.000 0.35 0.00 45.83 2.75
119 120 1.273327 AGGTTGGCTAAGTGCAAATGC 59.727 47.619 0.00 0.00 45.15 3.56
121 122 2.875296 TGAGGTTGGCTAAGTGCAAAT 58.125 42.857 0.00 0.00 45.15 2.32
158 159 4.839668 TGGTAAAAGGAAAATGACGTGG 57.160 40.909 0.00 0.00 0.00 4.94
171 172 4.651778 TGAGGTGTGGAGAATGGTAAAAG 58.348 43.478 0.00 0.00 0.00 2.27
191 192 3.925379 ACTCATGCGACAATACTGTTGA 58.075 40.909 0.00 0.00 39.06 3.18
197 198 4.928661 AACTTGACTCATGCGACAATAC 57.071 40.909 1.23 0.00 0.00 1.89
198 199 6.163476 AGTTAACTTGACTCATGCGACAATA 58.837 36.000 1.12 0.00 0.00 1.90
203 204 4.251543 TGAGTTAACTTGACTCATGCGA 57.748 40.909 10.02 0.00 46.21 5.10
213 214 5.003872 CGTCGATCTGTGATGAGTTAACTTG 59.996 44.000 10.02 0.00 0.00 3.16
214 215 5.096169 CGTCGATCTGTGATGAGTTAACTT 58.904 41.667 10.02 0.00 0.00 2.66
222 223 0.101219 CCTGCGTCGATCTGTGATGA 59.899 55.000 0.00 0.00 0.00 2.92
232 233 3.292426 TTTTTGCTACCTGCGTCGA 57.708 47.368 0.00 0.00 46.63 4.20
254 256 6.183360 GCCCAACCCATTTCAATATATGTGAA 60.183 38.462 6.35 6.35 33.21 3.18
257 262 5.466819 AGCCCAACCCATTTCAATATATGT 58.533 37.500 0.00 0.00 0.00 2.29
270 275 1.707989 TCAAATCAGTAGCCCAACCCA 59.292 47.619 0.00 0.00 0.00 4.51
272 277 6.524101 TTTTATCAAATCAGTAGCCCAACC 57.476 37.500 0.00 0.00 0.00 3.77
319 324 4.136796 TGGGAGCATATAAGCAACATCAC 58.863 43.478 2.37 0.00 36.85 3.06
337 342 8.052748 AGCTTAAATACAATACATGTTCTGGGA 58.947 33.333 2.30 0.00 43.63 4.37
358 363 3.126858 CAGTTTGCGCTTTGGATAGCTTA 59.873 43.478 9.73 0.00 39.03 3.09
365 370 1.000385 CCAATCAGTTTGCGCTTTGGA 60.000 47.619 9.73 0.00 36.55 3.53
368 373 2.622942 TCTTCCAATCAGTTTGCGCTTT 59.377 40.909 9.73 0.00 33.73 3.51
402 410 6.202188 CCGTGTACACAAGAAGACAAAAGTAT 59.798 38.462 24.98 0.00 0.00 2.12
403 411 5.521010 CCGTGTACACAAGAAGACAAAAGTA 59.479 40.000 24.98 0.00 0.00 2.24
404 412 4.331717 CCGTGTACACAAGAAGACAAAAGT 59.668 41.667 24.98 0.00 0.00 2.66
422 430 0.250467 GCCCTATGATGCATCCGTGT 60.250 55.000 23.67 9.78 0.00 4.49
425 433 2.696989 TATGCCCTATGATGCATCCG 57.303 50.000 23.67 11.79 44.58 4.18
426 434 7.123247 AGTTTAATTATGCCCTATGATGCATCC 59.877 37.037 23.67 7.77 44.58 3.51
433 441 9.432982 AATGGAAAGTTTAATTATGCCCTATGA 57.567 29.630 0.00 0.00 0.00 2.15
437 445 7.402941 AGGAAATGGAAAGTTTAATTATGCCCT 59.597 33.333 0.00 0.00 0.00 5.19
454 462 3.031736 ACGCTAGCTAGAAGGAAATGGA 58.968 45.455 25.15 0.00 0.00 3.41
455 463 3.385577 GACGCTAGCTAGAAGGAAATGG 58.614 50.000 25.15 3.79 0.00 3.16
465 473 0.170561 AACACGTGGACGCTAGCTAG 59.829 55.000 21.57 16.84 44.43 3.42
473 481 0.320073 ACCCATACAACACGTGGACG 60.320 55.000 21.57 9.99 46.33 4.79
487 495 0.598065 GAAGCAAAGCGTTGACCCAT 59.402 50.000 16.93 0.00 36.83 4.00
489 497 1.172812 AGGAAGCAAAGCGTTGACCC 61.173 55.000 16.93 12.25 36.83 4.46
500 508 7.944729 AAAATGCTATAGAAGAAGGAAGCAA 57.055 32.000 3.21 0.00 42.64 3.91
501 509 9.113838 CTTAAAATGCTATAGAAGAAGGAAGCA 57.886 33.333 3.21 0.00 43.43 3.91
502 510 8.563732 CCTTAAAATGCTATAGAAGAAGGAAGC 58.436 37.037 3.21 0.00 34.14 3.86
503 511 9.620259 ACCTTAAAATGCTATAGAAGAAGGAAG 57.380 33.333 15.59 6.25 35.83 3.46
504 512 9.396022 CACCTTAAAATGCTATAGAAGAAGGAA 57.604 33.333 15.59 0.00 35.83 3.36
505 513 8.548877 ACACCTTAAAATGCTATAGAAGAAGGA 58.451 33.333 15.59 0.00 35.83 3.36
517 525 8.371699 TGGCTAAATAAAACACCTTAAAATGCT 58.628 29.630 0.00 0.00 0.00 3.79
528 536 7.439655 TGGTGTTCAAATGGCTAAATAAAACAC 59.560 33.333 0.00 0.00 41.81 3.32
539 547 0.469705 TGCCTGGTGTTCAAATGGCT 60.470 50.000 0.00 0.00 40.82 4.75
540 548 0.609662 ATGCCTGGTGTTCAAATGGC 59.390 50.000 0.00 0.00 40.62 4.40
541 549 1.894466 TCATGCCTGGTGTTCAAATGG 59.106 47.619 0.00 0.00 0.00 3.16
542 550 3.663995 TTCATGCCTGGTGTTCAAATG 57.336 42.857 0.00 0.00 0.00 2.32
543 551 3.833650 TCATTCATGCCTGGTGTTCAAAT 59.166 39.130 0.00 0.00 0.00 2.32
552 560 5.947566 TGATAACCATATCATTCATGCCTGG 59.052 40.000 0.00 0.00 42.30 4.45
568 576 9.702253 AGTAGACTTCTCTTATCTTGATAACCA 57.298 33.333 0.00 0.00 0.00 3.67
595 603 1.760613 ACGTGACCCAAGAGAAGTTGA 59.239 47.619 0.00 0.00 0.00 3.18
599 607 2.135933 GTTGACGTGACCCAAGAGAAG 58.864 52.381 0.00 0.00 0.00 2.85
607 615 2.422597 TGATTGATGTTGACGTGACCC 58.577 47.619 0.00 0.00 0.00 4.46
611 619 5.930405 TCTTTGATGATTGATGTTGACGTG 58.070 37.500 0.00 0.00 0.00 4.49
638 646 0.470766 TTCCAAAGGCTGGTACGTGT 59.529 50.000 0.00 0.00 46.51 4.49
639 647 0.872388 GTTCCAAAGGCTGGTACGTG 59.128 55.000 0.00 0.00 46.51 4.49
640 648 0.250597 GGTTCCAAAGGCTGGTACGT 60.251 55.000 0.00 0.00 44.44 3.57
641 649 0.250553 TGGTTCCAAAGGCTGGTACG 60.251 55.000 0.00 0.00 44.44 3.67
642 650 2.215942 ATGGTTCCAAAGGCTGGTAC 57.784 50.000 0.00 0.00 46.51 3.34
643 651 2.990740 AATGGTTCCAAAGGCTGGTA 57.009 45.000 0.00 0.00 46.51 3.25
644 652 2.525368 GTAATGGTTCCAAAGGCTGGT 58.475 47.619 0.00 0.00 46.51 4.00
646 654 2.493278 CTGGTAATGGTTCCAAAGGCTG 59.507 50.000 0.00 0.00 33.06 4.85
647 655 2.378547 TCTGGTAATGGTTCCAAAGGCT 59.621 45.455 0.00 0.00 33.06 4.58
648 656 2.802719 TCTGGTAATGGTTCCAAAGGC 58.197 47.619 0.00 0.00 33.06 4.35
650 658 6.155475 TGTTTTCTGGTAATGGTTCCAAAG 57.845 37.500 0.00 0.00 33.06 2.77
653 661 4.342665 GGTTGTTTTCTGGTAATGGTTCCA 59.657 41.667 0.00 0.00 0.00 3.53
654 662 4.587262 AGGTTGTTTTCTGGTAATGGTTCC 59.413 41.667 0.00 0.00 0.00 3.62
655 663 5.300792 TGAGGTTGTTTTCTGGTAATGGTTC 59.699 40.000 0.00 0.00 0.00 3.62
659 667 5.222631 GCTTGAGGTTGTTTTCTGGTAATG 58.777 41.667 0.00 0.00 0.00 1.90
665 673 3.363178 GTTCGCTTGAGGTTGTTTTCTG 58.637 45.455 0.00 0.00 0.00 3.02
673 681 1.147600 AACGGGTTCGCTTGAGGTT 59.852 52.632 0.00 0.00 40.63 3.50
693 704 9.705290 ATTATTTGATTTTACAAGTCCACCAAC 57.295 29.630 0.00 0.00 0.00 3.77
722 733 4.221924 TCGGAATGTTTGACTGGTCTCATA 59.778 41.667 2.38 0.00 0.00 2.15
724 735 2.367241 TCGGAATGTTTGACTGGTCTCA 59.633 45.455 2.38 0.63 0.00 3.27
725 736 3.040147 TCGGAATGTTTGACTGGTCTC 57.960 47.619 2.38 0.00 0.00 3.36
729 740 4.829064 TCTTTTCGGAATGTTTGACTGG 57.171 40.909 0.00 0.00 0.00 4.00
731 742 7.084486 GCTTATTCTTTTCGGAATGTTTGACT 58.916 34.615 0.00 0.00 36.69 3.41
738 749 4.157656 TGGGTGCTTATTCTTTTCGGAATG 59.842 41.667 0.00 0.00 36.69 2.67
743 754 2.727916 GCGTGGGTGCTTATTCTTTTCG 60.728 50.000 0.00 0.00 0.00 3.46
744 755 2.415491 GGCGTGGGTGCTTATTCTTTTC 60.415 50.000 0.00 0.00 34.52 2.29
746 757 1.173913 GGCGTGGGTGCTTATTCTTT 58.826 50.000 0.00 0.00 34.52 2.52
752 763 0.179015 TGAAAAGGCGTGGGTGCTTA 60.179 50.000 0.00 0.00 34.52 3.09
755 766 0.033366 AAATGAAAAGGCGTGGGTGC 59.967 50.000 0.00 0.00 0.00 5.01
756 767 1.339610 TGAAATGAAAAGGCGTGGGTG 59.660 47.619 0.00 0.00 0.00 4.61
761 772 1.601914 GGCGTTGAAATGAAAAGGCGT 60.602 47.619 0.00 0.00 37.90 5.68
763 774 1.059942 CGGCGTTGAAATGAAAAGGC 58.940 50.000 0.00 0.00 36.65 4.35
764 775 2.415697 ACGGCGTTGAAATGAAAAGG 57.584 45.000 6.77 0.00 0.00 3.11
765 776 3.060607 CCAAACGGCGTTGAAATGAAAAG 60.061 43.478 27.50 4.08 0.00 2.27
776 787 1.720694 CTTGGTGTCCAAACGGCGTT 61.721 55.000 21.19 21.19 43.44 4.84
782 793 1.067060 GTGCCTTCTTGGTGTCCAAAC 59.933 52.381 2.85 0.00 43.44 2.93
792 803 2.417933 GTGTCTGCTATGTGCCTTCTTG 59.582 50.000 0.00 0.00 42.00 3.02
793 804 2.038952 TGTGTCTGCTATGTGCCTTCTT 59.961 45.455 0.00 0.00 42.00 2.52
796 807 1.072173 TGTGTGTCTGCTATGTGCCTT 59.928 47.619 0.00 0.00 42.00 4.35
799 810 2.730090 GCATTGTGTGTCTGCTATGTGC 60.730 50.000 0.00 0.00 43.25 4.57
800 811 2.745821 AGCATTGTGTGTCTGCTATGTG 59.254 45.455 0.00 0.00 44.08 3.21
804 815 3.743521 AGAAAGCATTGTGTGTCTGCTA 58.256 40.909 0.00 0.00 45.10 3.49
806 817 3.360249 AAGAAAGCATTGTGTGTCTGC 57.640 42.857 0.00 0.00 36.15 4.26
807 818 3.488310 GCAAAGAAAGCATTGTGTGTCTG 59.512 43.478 0.00 0.00 0.00 3.51
808 819 3.130869 TGCAAAGAAAGCATTGTGTGTCT 59.869 39.130 0.00 0.00 37.02 3.41
809 820 3.446799 TGCAAAGAAAGCATTGTGTGTC 58.553 40.909 0.00 0.00 37.02 3.67
810 821 3.523606 TGCAAAGAAAGCATTGTGTGT 57.476 38.095 0.00 0.00 37.02 3.72
835 846 0.531974 TCGTCGAAGTGCCAGCTTTT 60.532 50.000 0.00 0.00 0.00 2.27
838 849 0.530744 TTATCGTCGAAGTGCCAGCT 59.469 50.000 0.00 0.00 0.00 4.24
849 861 4.439776 TCGCTTGATGTATGTTTATCGTCG 59.560 41.667 0.00 0.00 0.00 5.12
852 864 9.644993 TTTATTTCGCTTGATGTATGTTTATCG 57.355 29.630 0.00 0.00 0.00 2.92
860 872 7.816640 ACACTGTTTTATTTCGCTTGATGTAT 58.183 30.769 0.00 0.00 0.00 2.29
861 873 7.197071 ACACTGTTTTATTTCGCTTGATGTA 57.803 32.000 0.00 0.00 0.00 2.29
862 874 6.072112 ACACTGTTTTATTTCGCTTGATGT 57.928 33.333 0.00 0.00 0.00 3.06
863 875 6.088085 GGAACACTGTTTTATTTCGCTTGATG 59.912 38.462 0.00 0.00 0.00 3.07
864 876 6.149633 GGAACACTGTTTTATTTCGCTTGAT 58.850 36.000 0.00 0.00 0.00 2.57
866 878 4.679654 GGGAACACTGTTTTATTTCGCTTG 59.320 41.667 0.00 0.00 0.00 4.01
867 879 4.339814 TGGGAACACTGTTTTATTTCGCTT 59.660 37.500 0.00 0.00 33.40 4.68
868 880 3.886505 TGGGAACACTGTTTTATTTCGCT 59.113 39.130 0.00 0.00 33.40 4.93
869 881 4.231718 TGGGAACACTGTTTTATTTCGC 57.768 40.909 0.00 0.00 33.40 4.70
886 906 5.885352 TCGAATTGAAAATAGCAAGATGGGA 59.115 36.000 0.00 0.00 0.00 4.37
903 923 2.797087 GCATTGCCACCTCATCGAATTG 60.797 50.000 0.00 0.00 0.00 2.32
904 924 1.406539 GCATTGCCACCTCATCGAATT 59.593 47.619 0.00 0.00 0.00 2.17
906 926 2.481212 GCATTGCCACCTCATCGAA 58.519 52.632 0.00 0.00 0.00 3.71
944 965 8.545229 TGTTATTTTGCCACCTGAATAAAATG 57.455 30.769 0.00 0.00 34.12 2.32
945 966 9.566432 TTTGTTATTTTGCCACCTGAATAAAAT 57.434 25.926 0.00 0.00 35.72 1.82
946 967 8.964476 TTTGTTATTTTGCCACCTGAATAAAA 57.036 26.923 0.00 0.00 0.00 1.52
947 968 8.964476 TTTTGTTATTTTGCCACCTGAATAAA 57.036 26.923 0.00 0.00 0.00 1.40
950 971 6.072563 GCATTTTGTTATTTTGCCACCTGAAT 60.073 34.615 0.00 0.00 0.00 2.57
952 973 4.754114 GCATTTTGTTATTTTGCCACCTGA 59.246 37.500 0.00 0.00 0.00 3.86
1065 1094 0.030101 GAATCGAGAGTGGAGGCGAG 59.970 60.000 0.00 0.00 36.12 5.03
1066 1095 1.384989 GGAATCGAGAGTGGAGGCGA 61.385 60.000 0.00 0.00 37.17 5.54
1067 1096 1.066587 GGAATCGAGAGTGGAGGCG 59.933 63.158 0.00 0.00 0.00 5.52
1068 1097 0.755686 ATGGAATCGAGAGTGGAGGC 59.244 55.000 0.00 0.00 0.00 4.70
1069 1098 2.810439 GATGGAATCGAGAGTGGAGG 57.190 55.000 0.00 0.00 31.13 4.30
1151 1190 4.925861 GAGGAGGAGCGCCATGGC 62.926 72.222 27.67 27.67 36.29 4.40
1192 1231 3.364964 ACGGGGATGGAGGGGAGA 61.365 66.667 0.00 0.00 0.00 3.71
1193 1232 3.164269 CACGGGGATGGAGGGGAG 61.164 72.222 0.00 0.00 0.00 4.30
1335 1387 1.442526 ACGTCGCCGTCCGATTCTAT 61.443 55.000 6.00 0.00 46.28 1.98
1397 1452 3.867216 TGATCATCAATCTGCCATAGGCG 60.867 47.826 3.29 0.00 41.05 5.52
1411 1466 0.036483 CGGGGTGTGTGTGATCATCA 60.036 55.000 0.00 0.00 0.00 3.07
1412 1467 1.369091 GCGGGGTGTGTGTGATCATC 61.369 60.000 0.00 0.00 0.00 2.92
1413 1468 1.377202 GCGGGGTGTGTGTGATCAT 60.377 57.895 0.00 0.00 0.00 2.45
1424 1479 2.484062 GGAATGCATGAGCGGGGTG 61.484 63.158 0.00 0.00 46.23 4.61
1444 1500 1.153289 CAATCCAGGTCGCTGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
1448 1504 0.742281 CTCCACAATCCAGGTCGCTG 60.742 60.000 0.00 0.00 0.00 5.18
1575 1631 1.970352 CTGAGGCTTCTCTCCCCAGC 61.970 65.000 0.00 0.00 38.32 4.85
1577 1633 0.341258 ATCTGAGGCTTCTCTCCCCA 59.659 55.000 0.00 0.00 38.32 4.96
1590 1646 7.531857 AACCTATGTATGGTCTACATCTGAG 57.468 40.000 1.38 0.00 41.03 3.35
1634 1690 4.618489 GCTCCAAGAAAAATCACACGATTG 59.382 41.667 0.00 0.00 41.12 2.67
1656 1716 1.049402 ACGAGCTAGGGATTAAGGGC 58.951 55.000 0.00 0.00 0.00 5.19
1659 1719 6.049149 TGATGAAAACGAGCTAGGGATTAAG 58.951 40.000 0.00 0.00 0.00 1.85
1661 1721 5.607939 TGATGAAAACGAGCTAGGGATTA 57.392 39.130 0.00 0.00 0.00 1.75
1669 1729 2.430465 AGCACATGATGAAAACGAGCT 58.570 42.857 0.00 0.00 0.00 4.09
1692 1752 0.932585 AATTGAAACGCGTGCAACCG 60.933 50.000 24.22 5.79 36.73 4.44
1701 1761 0.780002 CAGCTGCACAATTGAAACGC 59.220 50.000 13.59 9.42 0.00 4.84
1708 1768 0.520404 CTCTTCGCAGCTGCACAATT 59.480 50.000 36.03 0.00 42.21 2.32
1709 1769 0.604780 ACTCTTCGCAGCTGCACAAT 60.605 50.000 36.03 14.72 42.21 2.71
1734 1794 3.749064 GCTCGCAGTCCAGGACGA 61.749 66.667 14.32 7.20 37.67 4.20
1768 1828 2.049063 GCGGCGACAGAGAAGTGT 60.049 61.111 12.98 0.00 0.00 3.55
1803 1863 3.559171 GGGAATACAAACAGAGGAGCACA 60.559 47.826 0.00 0.00 0.00 4.57
1816 1876 0.107410 AAGATGCCGCGGGAATACAA 60.107 50.000 27.18 0.00 0.00 2.41
1857 1918 3.304057 GGCAGCACACTAGTTTCAGTTTC 60.304 47.826 0.00 0.00 0.00 2.78
1881 1946 8.776376 AAACATTGAAACATACATTGGGATTC 57.224 30.769 0.00 0.00 0.00 2.52
1883 1948 8.156165 ACAAAACATTGAAACATACATTGGGAT 58.844 29.630 0.00 0.00 0.00 3.85
1968 2033 3.624410 CACAAGCATAAGTCAGCTGCATA 59.376 43.478 9.47 2.16 41.70 3.14
2077 2142 1.001860 ACTGTCAGAGGAAGAGCTTGC 59.998 52.381 6.91 0.00 0.00 4.01
2086 2151 0.784495 ACCCCACTACTGTCAGAGGA 59.216 55.000 6.91 0.00 0.00 3.71
2241 2309 4.011966 TCATTGCTGACATCTCAGTTGT 57.988 40.909 0.00 0.00 45.30 3.32
2407 2475 4.935352 TTTAATGACAAGCAAGCCAGTT 57.065 36.364 0.00 0.00 0.00 3.16
2420 2488 6.695713 GGGCAAGACCGATTATTTTTAATGAC 59.304 38.462 0.00 0.00 40.62 3.06
2625 2693 6.546428 AATAATAGATGGGAGTATGGGACG 57.454 41.667 0.00 0.00 0.00 4.79
2627 2695 7.620880 CGAAAATAATAGATGGGAGTATGGGA 58.379 38.462 0.00 0.00 0.00 4.37
2628 2696 6.316390 GCGAAAATAATAGATGGGAGTATGGG 59.684 42.308 0.00 0.00 0.00 4.00
2629 2697 6.878923 TGCGAAAATAATAGATGGGAGTATGG 59.121 38.462 0.00 0.00 0.00 2.74
2630 2698 7.065085 CCTGCGAAAATAATAGATGGGAGTATG 59.935 40.741 0.00 0.00 0.00 2.39
2631 2699 7.106239 CCTGCGAAAATAATAGATGGGAGTAT 58.894 38.462 0.00 0.00 0.00 2.12
2632 2700 6.042781 ACCTGCGAAAATAATAGATGGGAGTA 59.957 38.462 0.00 0.00 0.00 2.59
2633 2701 5.163195 ACCTGCGAAAATAATAGATGGGAGT 60.163 40.000 0.00 0.00 0.00 3.85
2634 2702 5.308825 ACCTGCGAAAATAATAGATGGGAG 58.691 41.667 0.00 0.00 0.00 4.30
2889 2960 5.016173 ACAGATAGCTTGACAAGAGAGAGT 58.984 41.667 19.51 6.59 0.00 3.24
3047 3161 2.832643 TTACCTCGGTCATGGTAGGA 57.167 50.000 9.58 0.00 39.61 2.94
3053 3167 9.716507 CAATTTTAGTAAATTACCTCGGTCATG 57.283 33.333 0.00 0.00 40.97 3.07
3099 3214 8.121305 TGGTCATGCTTTATGTTTTATCTGTT 57.879 30.769 0.00 0.00 38.01 3.16
3156 3271 7.433680 ACAGGCCATTAAAAAGTTCTTTACAG 58.566 34.615 5.01 0.00 0.00 2.74
3163 3278 5.014202 TCCCTACAGGCCATTAAAAAGTTC 58.986 41.667 5.01 0.00 34.51 3.01
3166 3281 5.993748 TTTCCCTACAGGCCATTAAAAAG 57.006 39.130 5.01 0.00 34.51 2.27
3309 4161 4.216042 CACACATGTCCTTGACAATTAGCA 59.784 41.667 0.00 0.00 45.96 3.49
3646 4502 5.110814 TCTTCTCTTCTTTTGGTTCCACA 57.889 39.130 0.00 0.00 0.00 4.17
3769 4625 3.421844 AGGGCTTACATTGTTGTCTTCC 58.578 45.455 0.00 0.00 37.28 3.46
3832 4688 3.084786 GGGGAACAATTCTGAAGGTCAG 58.915 50.000 0.00 0.00 45.59 3.51
3849 4705 1.420532 AAGCGGTACCTGTTTGGGGA 61.421 55.000 10.90 0.00 41.11 4.81
3984 4840 3.785486 TCATGCTCAGTATTTGGACTCG 58.215 45.455 0.00 0.00 0.00 4.18
4313 5170 6.092670 CGACATGTACATTTGAAGAACTCCAT 59.907 38.462 5.37 0.00 0.00 3.41
4333 5190 5.923114 CAGTAGAGCATAACATAAGCGACAT 59.077 40.000 0.00 0.00 0.00 3.06
4345 5202 3.871006 CCGTCAATTGCAGTAGAGCATAA 59.129 43.478 0.00 0.00 45.19 1.90
4380 5237 3.253432 GGTTTGCAGTAACCTGAGGAAAG 59.747 47.826 4.99 0.00 43.44 2.62
4877 5738 4.741676 GCCTGCATATTAAACAGCAATCAC 59.258 41.667 0.00 0.00 36.44 3.06
4982 5843 5.649395 TGAAGCTCCAATCTTAATTGACCTG 59.351 40.000 0.00 0.00 44.25 4.00
5160 6021 6.264744 CAGGTCAAAGGAGCAAATGATATGAT 59.735 38.462 0.00 0.00 43.97 2.45
5170 6031 4.098914 ACAATACAGGTCAAAGGAGCAA 57.901 40.909 0.00 0.00 43.97 3.91
5254 6115 9.436957 TTTTAGACTGTTATCCTTTGCTCTTAG 57.563 33.333 0.00 0.00 0.00 2.18
5255 6116 9.216117 GTTTTAGACTGTTATCCTTTGCTCTTA 57.784 33.333 0.00 0.00 0.00 2.10
5333 6194 9.149225 GCATCAGAATTATCAAGGTACAGATAG 57.851 37.037 0.00 0.00 31.34 2.08
5334 6195 8.874156 AGCATCAGAATTATCAAGGTACAGATA 58.126 33.333 0.00 0.00 0.00 1.98
5336 6197 7.129457 AGCATCAGAATTATCAAGGTACAGA 57.871 36.000 0.00 0.00 0.00 3.41
5337 6198 7.115520 CGTAGCATCAGAATTATCAAGGTACAG 59.884 40.741 0.00 0.00 0.00 2.74
5338 6199 6.923508 CGTAGCATCAGAATTATCAAGGTACA 59.076 38.462 0.00 0.00 0.00 2.90
5564 6431 0.900182 TCTTCTCAGCTGCTCCGGAA 60.900 55.000 9.47 7.19 0.00 4.30
5713 6580 6.309980 CGTCATAGATGCATAGGAATGAGAAC 59.690 42.308 0.00 0.00 34.84 3.01
5802 6670 1.359130 AGGTAGCCCTTGAATGCCTTT 59.641 47.619 0.00 0.00 38.13 3.11
5995 6865 6.708949 GCCGATAAAATAGGTTAACCATCTCA 59.291 38.462 26.26 7.30 38.89 3.27
6002 6872 6.419710 GCCATTTGCCGATAAAATAGGTTAAC 59.580 38.462 0.00 0.00 0.00 2.01
6046 6916 1.302511 ACCAGCCAAGTAACGCAGG 60.303 57.895 0.00 0.00 37.65 4.85
6059 6929 1.070601 AGGCAACAATTTTCCACCAGC 59.929 47.619 0.00 0.00 41.41 4.85
6091 6961 9.731819 GATACACAGTCTTCTTTGAATACGATA 57.268 33.333 0.00 0.00 0.00 2.92
6092 6962 7.432545 CGATACACAGTCTTCTTTGAATACGAT 59.567 37.037 0.00 0.00 0.00 3.73
6093 6963 6.745907 CGATACACAGTCTTCTTTGAATACGA 59.254 38.462 0.00 0.00 0.00 3.43
6109 6994 4.391830 ACCTTGCAACAATACGATACACAG 59.608 41.667 0.00 0.00 0.00 3.66
6158 7054 6.870971 AAAGGTACAACATAAACGACACAT 57.129 33.333 0.00 0.00 0.00 3.21
6184 7080 3.323403 CCACATTGCCCAGTTAGGAAAAA 59.677 43.478 0.00 0.00 41.22 1.94
6185 7081 2.896685 CCACATTGCCCAGTTAGGAAAA 59.103 45.455 0.00 0.00 41.22 2.29
6186 7082 2.524306 CCACATTGCCCAGTTAGGAAA 58.476 47.619 0.00 0.00 41.22 3.13
6187 7083 1.272425 CCCACATTGCCCAGTTAGGAA 60.272 52.381 0.00 0.00 41.22 3.36
6206 7104 0.534203 TCGCGCCCTTATTTCATCCC 60.534 55.000 0.00 0.00 0.00 3.85
6222 7120 0.103208 AGCTACAGGCACATAGTCGC 59.897 55.000 0.00 0.00 44.79 5.19
6232 7130 0.881796 GGTTTCCAACAGCTACAGGC 59.118 55.000 0.00 0.00 42.19 4.85
6233 7131 2.154462 CAGGTTTCCAACAGCTACAGG 58.846 52.381 0.00 0.00 0.00 4.00
6234 7132 1.537202 GCAGGTTTCCAACAGCTACAG 59.463 52.381 0.00 0.00 33.09 2.74
6235 7133 1.142870 AGCAGGTTTCCAACAGCTACA 59.857 47.619 4.55 0.00 40.81 2.74
6236 7134 1.537202 CAGCAGGTTTCCAACAGCTAC 59.463 52.381 5.75 0.00 40.70 3.58
6237 7135 1.419762 TCAGCAGGTTTCCAACAGCTA 59.580 47.619 5.75 0.00 40.70 3.32
6238 7136 0.183492 TCAGCAGGTTTCCAACAGCT 59.817 50.000 0.00 1.32 42.51 4.24
6239 7137 0.312102 GTCAGCAGGTTTCCAACAGC 59.688 55.000 0.00 0.00 35.15 4.40
6432 7332 5.604758 TGGACAGGAGAATTCTCACTATG 57.395 43.478 31.29 24.57 44.60 2.23
6759 7669 4.785301 CTGAGCTTGAAGGGGATGAATTA 58.215 43.478 0.00 0.00 0.00 1.40
6760 7670 3.629087 CTGAGCTTGAAGGGGATGAATT 58.371 45.455 0.00 0.00 0.00 2.17
6761 7671 2.686118 GCTGAGCTTGAAGGGGATGAAT 60.686 50.000 0.00 0.00 0.00 2.57
6946 7856 1.395954 CCACGTCGTAGAGTTCATCGA 59.604 52.381 0.00 0.00 36.95 3.59
7090 8000 1.589993 CAGTACTGGGCGATGCTCG 60.590 63.158 15.49 1.80 43.89 5.03
7114 8024 2.830321 GGGTAGCTACAGTTGTACAGGT 59.170 50.000 24.75 0.00 0.00 4.00
7150 8060 6.464465 GGCTATGCTAGGGTATCTCTCAAAAA 60.464 42.308 0.00 0.00 0.00 1.94
7151 8061 5.012148 GGCTATGCTAGGGTATCTCTCAAAA 59.988 44.000 0.00 0.00 0.00 2.44
7152 8062 4.528596 GGCTATGCTAGGGTATCTCTCAAA 59.471 45.833 0.00 0.00 0.00 2.69
7154 8064 3.335183 AGGCTATGCTAGGGTATCTCTCA 59.665 47.826 0.00 0.00 0.00 3.27
7155 8065 3.976015 AGGCTATGCTAGGGTATCTCTC 58.024 50.000 0.00 0.00 0.00 3.20
7156 8066 4.093011 CAAGGCTATGCTAGGGTATCTCT 58.907 47.826 0.00 0.00 0.00 3.10
7157 8067 3.368948 GCAAGGCTATGCTAGGGTATCTC 60.369 52.174 12.44 0.00 43.06 2.75
7158 8068 2.569404 GCAAGGCTATGCTAGGGTATCT 59.431 50.000 12.44 0.00 43.06 1.98
7159 8069 2.675317 CGCAAGGCTATGCTAGGGTATC 60.675 54.545 15.99 0.00 44.21 2.24
7160 8070 1.276421 CGCAAGGCTATGCTAGGGTAT 59.724 52.381 15.99 0.00 44.21 2.73
7161 8071 0.679505 CGCAAGGCTATGCTAGGGTA 59.320 55.000 15.99 0.00 44.21 3.69
7162 8072 1.338136 ACGCAAGGCTATGCTAGGGT 61.338 55.000 15.99 6.95 44.21 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.