Multiple sequence alignment - TraesCS7D01G009800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G009800 chr7D 100.000 2994 0 0 1 2994 4707975 4704982 0.000000e+00 5529.0
1 TraesCS7D01G009800 chr7D 98.960 769 8 0 1 769 614923716 614922948 0.000000e+00 1376.0
2 TraesCS7D01G009800 chr7D 100.000 615 0 0 3283 3897 4704693 4704079 0.000000e+00 1136.0
3 TraesCS7D01G009800 chr7D 88.852 897 83 12 1988 2878 4718278 4717393 0.000000e+00 1086.0
4 TraesCS7D01G009800 chr7D 80.401 648 57 26 1343 1967 4718952 4718352 2.780000e-116 429.0
5 TraesCS7D01G009800 chr7D 81.627 332 16 10 835 1164 4719366 4719078 2.340000e-57 233.0
6 TraesCS7D01G009800 chr7A 94.997 1579 67 5 1427 2994 4531044 4529467 0.000000e+00 2468.0
7 TraesCS7D01G009800 chr7A 84.951 2060 182 42 835 2878 4587554 4585607 0.000000e+00 1969.0
8 TraesCS7D01G009800 chr7A 81.126 657 50 16 3304 3897 4529413 4528768 3.550000e-125 459.0
9 TraesCS7D01G009800 chr7A 84.375 256 19 5 3305 3539 4585498 4585243 8.420000e-57 231.0
10 TraesCS7D01G009800 chr7A 88.398 181 10 5 975 1153 4531361 4531190 1.420000e-49 207.0
11 TraesCS7D01G009800 chr7A 95.327 107 5 0 835 941 4531467 4531361 1.860000e-38 171.0
12 TraesCS7D01G009800 chr4A 87.518 1386 99 29 1313 2658 738933055 738934406 0.000000e+00 1533.0
13 TraesCS7D01G009800 chr4A 92.048 415 30 2 835 1246 738932621 738933035 7.260000e-162 580.0
14 TraesCS7D01G009800 chr4A 89.254 335 22 6 1364 1686 738972136 738971804 1.300000e-109 407.0
15 TraesCS7D01G009800 chr4A 90.476 294 23 4 2702 2990 738934400 738934693 2.200000e-102 383.0
16 TraesCS7D01G009800 chr4A 89.503 181 8 4 3663 3842 738934986 738935156 6.560000e-53 219.0
17 TraesCS7D01G009800 chr4A 95.495 111 5 0 835 945 738972305 738972195 1.110000e-40 178.0
18 TraesCS7D01G009800 chr4A 96.491 57 2 0 1011 1067 738972195 738972139 1.150000e-15 95.3
19 TraesCS7D01G009800 chr6D 98.922 835 9 0 1 835 2039052 2038218 0.000000e+00 1493.0
20 TraesCS7D01G009800 chr2D 98.922 835 8 1 1 835 435914982 435915815 0.000000e+00 1491.0
21 TraesCS7D01G009800 chr2D 98.922 835 8 1 1 835 435918723 435919556 0.000000e+00 1491.0
22 TraesCS7D01G009800 chr7B 97.725 835 19 0 1 835 650258272 650259106 0.000000e+00 1437.0
23 TraesCS7D01G009800 chr7B 97.725 835 19 0 1 835 650263622 650264456 0.000000e+00 1437.0
24 TraesCS7D01G009800 chr3A 95.933 836 33 1 1 835 688028456 688029291 0.000000e+00 1354.0
25 TraesCS7D01G009800 chr2A 95.590 839 36 1 1 838 30875629 30874791 0.000000e+00 1343.0
26 TraesCS7D01G009800 chrUn 94.167 840 44 3 1 838 73940959 73941795 0.000000e+00 1275.0
27 TraesCS7D01G009800 chrUn 84.472 161 25 0 1751 1911 342509007 342509167 4.030000e-35 159.0
28 TraesCS7D01G009800 chrUn 84.472 161 25 0 1751 1911 382684603 382684443 4.030000e-35 159.0
29 TraesCS7D01G009800 chrUn 84.472 161 25 0 1751 1911 399641170 399641010 4.030000e-35 159.0
30 TraesCS7D01G009800 chr1A 88.500 200 21 2 1751 1950 451726322 451726519 1.400000e-59 241.0
31 TraesCS7D01G009800 chr5B 87.000 200 26 0 1751 1950 430263892 430263693 3.920000e-55 226.0
32 TraesCS7D01G009800 chr5B 84.472 161 25 0 1751 1911 430165843 430165683 4.030000e-35 159.0
33 TraesCS7D01G009800 chr3B 86.500 200 27 0 1751 1950 202592363 202592562 1.820000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G009800 chr7D 4704079 4707975 3896 True 3332.500000 5529 100.000000 1 3897 2 chr7D.!!$R2 3896
1 TraesCS7D01G009800 chr7D 614922948 614923716 768 True 1376.000000 1376 98.960000 1 769 1 chr7D.!!$R1 768
2 TraesCS7D01G009800 chr7D 4717393 4719366 1973 True 582.666667 1086 83.626667 835 2878 3 chr7D.!!$R3 2043
3 TraesCS7D01G009800 chr7A 4585243 4587554 2311 True 1100.000000 1969 84.663000 835 3539 2 chr7A.!!$R2 2704
4 TraesCS7D01G009800 chr7A 4528768 4531467 2699 True 826.250000 2468 89.962000 835 3897 4 chr7A.!!$R1 3062
5 TraesCS7D01G009800 chr4A 738932621 738935156 2535 False 678.750000 1533 89.886250 835 3842 4 chr4A.!!$F1 3007
6 TraesCS7D01G009800 chr4A 738971804 738972305 501 True 226.766667 407 93.746667 835 1686 3 chr4A.!!$R1 851
7 TraesCS7D01G009800 chr6D 2038218 2039052 834 True 1493.000000 1493 98.922000 1 835 1 chr6D.!!$R1 834
8 TraesCS7D01G009800 chr2D 435914982 435919556 4574 False 1491.000000 1491 98.922000 1 835 2 chr2D.!!$F1 834
9 TraesCS7D01G009800 chr7B 650258272 650259106 834 False 1437.000000 1437 97.725000 1 835 1 chr7B.!!$F1 834
10 TraesCS7D01G009800 chr7B 650263622 650264456 834 False 1437.000000 1437 97.725000 1 835 1 chr7B.!!$F2 834
11 TraesCS7D01G009800 chr3A 688028456 688029291 835 False 1354.000000 1354 95.933000 1 835 1 chr3A.!!$F1 834
12 TraesCS7D01G009800 chr2A 30874791 30875629 838 True 1343.000000 1343 95.590000 1 838 1 chr2A.!!$R1 837
13 TraesCS7D01G009800 chrUn 73940959 73941795 836 False 1275.000000 1275 94.167000 1 838 1 chrUn.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 4635 3.071312 ACATGCCATTCTCTCATCTCTCC 59.929 47.826 0.0 0.0 0.0 3.71 F
1310 5077 0.034896 GACCGGCCTCTGTTTCTTCA 59.965 55.000 0.0 0.0 0.0 3.02 F
1312 5079 0.250295 CCGGCCTCTGTTTCTTCACA 60.250 55.000 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 6191 0.606604 TGGAGCGGAACTTGGACTAC 59.393 55.000 0.00 0.0 0.00 2.73 R
2460 6372 3.807553 CCACATGGCCAAGTTTTTCTTT 58.192 40.909 11.76 0.0 33.63 2.52 R
2950 6868 4.391155 AGCGTATTCAGTCTCTAGGTAGG 58.609 47.826 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 291 5.098663 AGGACTTCCTTGGTGAGGTTATTA 58.901 41.667 0.00 0.00 46.09 0.98
889 4635 3.071312 ACATGCCATTCTCTCATCTCTCC 59.929 47.826 0.00 0.00 0.00 3.71
958 4704 4.557690 CACCTTTGATACGTTGAGTACTCG 59.442 45.833 17.85 9.49 38.29 4.18
1125 4886 4.815269 AGTTTTCCTCTCTCTCGTGAATG 58.185 43.478 0.00 0.00 0.00 2.67
1154 4915 4.699637 TCGTGAAAGGTTAGCTTTCTCAA 58.300 39.130 29.01 14.73 40.39 3.02
1161 4922 3.755378 AGGTTAGCTTTCTCAATGTGCTG 59.245 43.478 0.00 0.00 35.47 4.41
1216 4977 1.210234 TGATTGGGTGATGATCGCACT 59.790 47.619 9.89 0.00 36.53 4.40
1219 4980 3.558931 TTGGGTGATGATCGCACTATT 57.441 42.857 9.89 0.00 36.53 1.73
1232 4993 2.765122 GCACTATTCCAGCCTCTGATC 58.235 52.381 0.00 0.00 32.44 2.92
1287 5054 3.515901 CCAGTTAGCTGTTCCTAGAGGTT 59.484 47.826 5.81 0.00 41.02 3.50
1288 5055 4.710375 CCAGTTAGCTGTTCCTAGAGGTTA 59.290 45.833 5.81 0.00 41.02 2.85
1290 5057 6.295688 CCAGTTAGCTGTTCCTAGAGGTTAAA 60.296 42.308 5.81 0.00 41.02 1.52
1292 5059 6.724905 AGTTAGCTGTTCCTAGAGGTTAAAGA 59.275 38.462 0.00 0.00 36.34 2.52
1293 5060 5.408880 AGCTGTTCCTAGAGGTTAAAGAC 57.591 43.478 0.00 0.00 36.34 3.01
1302 5069 3.154589 GGTTAAAGACCGGCCTCTG 57.845 57.895 0.00 0.00 39.00 3.35
1303 5070 0.323957 GGTTAAAGACCGGCCTCTGT 59.676 55.000 0.00 0.00 39.00 3.41
1304 5071 1.271217 GGTTAAAGACCGGCCTCTGTT 60.271 52.381 0.00 0.00 39.00 3.16
1305 5072 2.501261 GTTAAAGACCGGCCTCTGTTT 58.499 47.619 0.00 0.00 0.00 2.83
1306 5073 2.467566 TAAAGACCGGCCTCTGTTTC 57.532 50.000 0.00 0.00 0.00 2.78
1307 5074 0.765510 AAAGACCGGCCTCTGTTTCT 59.234 50.000 0.00 0.00 0.00 2.52
1308 5075 0.765510 AAGACCGGCCTCTGTTTCTT 59.234 50.000 0.00 0.00 0.00 2.52
1309 5076 0.321996 AGACCGGCCTCTGTTTCTTC 59.678 55.000 0.00 0.00 0.00 2.87
1310 5077 0.034896 GACCGGCCTCTGTTTCTTCA 59.965 55.000 0.00 0.00 0.00 3.02
1311 5078 0.250338 ACCGGCCTCTGTTTCTTCAC 60.250 55.000 0.00 0.00 0.00 3.18
1312 5079 0.250295 CCGGCCTCTGTTTCTTCACA 60.250 55.000 0.00 0.00 0.00 3.58
1313 5080 1.151668 CGGCCTCTGTTTCTTCACAG 58.848 55.000 0.00 0.00 44.96 3.66
1314 5081 1.528129 GGCCTCTGTTTCTTCACAGG 58.472 55.000 0.00 0.00 43.92 4.00
1447 5261 9.362539 TGTCGTTAGATTTCTGGTATTTCTTAC 57.637 33.333 0.00 0.00 0.00 2.34
1479 5294 6.089417 GCTAAATTTCAGTGTGTATTTGTGCC 59.911 38.462 0.00 0.00 0.00 5.01
1513 5328 5.365021 TGATTTGGATTGTTGTTGGGTTT 57.635 34.783 0.00 0.00 0.00 3.27
1516 5331 1.202463 TGGATTGTTGTTGGGTTTGCG 60.202 47.619 0.00 0.00 0.00 4.85
1624 5456 7.715265 TGGCTACTTTTCTGAATATCGATTC 57.285 36.000 1.71 0.00 41.72 2.52
1625 5457 7.500992 TGGCTACTTTTCTGAATATCGATTCT 58.499 34.615 1.71 0.00 41.87 2.40
1821 5673 3.815401 CACGAAATATTCTGGATGGTCCC 59.185 47.826 0.00 0.00 35.03 4.46
2000 5905 7.173218 GCTACTGCTTATGCTAATTGTCCATTA 59.827 37.037 1.96 0.00 40.48 1.90
2275 6183 4.697352 AGCATGACTATCAAGGTTTGTGAC 59.303 41.667 0.00 0.00 0.00 3.67
2296 6204 4.652822 ACCTTTCATGTAGTCCAAGTTCC 58.347 43.478 0.00 0.00 0.00 3.62
2370 6282 1.399791 GCACAGTAATCAAGGAGCAGC 59.600 52.381 0.00 0.00 0.00 5.25
2460 6372 2.775890 CAGCAAAGAAGGAGCTTGAGA 58.224 47.619 0.00 0.00 36.26 3.27
2671 6583 3.120477 TCAACCTTTTTATACTGCACGCG 60.120 43.478 3.53 3.53 0.00 6.01
2704 6617 5.981088 TTTCTGCAGAATCAAGGCATAAA 57.019 34.783 28.89 7.45 36.87 1.40
2950 6868 7.396540 AAATCCCTGAATTTGTACTGATCAC 57.603 36.000 0.00 0.00 0.00 3.06
2970 6888 5.366460 TCACCTACCTAGAGACTGAATACG 58.634 45.833 0.00 0.00 0.00 3.06
2990 6908 4.945246 ACGCTATAAATCCATGAGTTCGT 58.055 39.130 0.00 0.00 0.00 3.85
3310 7236 5.410924 TGTACAGACATACAAGCAGTGATC 58.589 41.667 0.00 0.00 32.07 2.92
3332 7258 6.681729 TCCTGAACTTAGTACAACCATCTT 57.318 37.500 0.00 0.00 0.00 2.40
3389 7318 5.157781 TGAGCACGCCAACATTTAATTAAC 58.842 37.500 0.00 0.00 0.00 2.01
3406 7335 5.763876 ATTAACTTAGTCCTTGCTCCTGT 57.236 39.130 0.00 0.00 0.00 4.00
3513 7469 7.928307 ATGTTTGTGCATAGTCTGTTTAGAT 57.072 32.000 0.00 0.00 34.94 1.98
3553 7528 9.983804 GCTCAGTATAAACACCATAGTAAAAAC 57.016 33.333 0.00 0.00 0.00 2.43
3561 7536 8.927675 AAACACCATAGTAAAAACATAGACCA 57.072 30.769 0.00 0.00 0.00 4.02
3586 7563 8.721478 CATAGATACAAAATATGTGTAGGTGGC 58.279 37.037 5.90 0.00 43.77 5.01
3609 7586 0.818040 AGCAACAACACGAGAACCCC 60.818 55.000 0.00 0.00 0.00 4.95
3616 7593 1.553706 ACACGAGAACCCCGTTAGAT 58.446 50.000 0.00 0.00 38.29 1.98
3626 7603 2.758423 ACCCCGTTAGATTTGAATTGCC 59.242 45.455 0.00 0.00 0.00 4.52
3633 7610 3.899052 AGATTTGAATTGCCCATGTGG 57.101 42.857 0.00 0.00 37.09 4.17
3647 7624 5.133221 GCCCATGTGGAATTTGTAGATACT 58.867 41.667 0.00 0.00 37.39 2.12
3655 7632 8.919145 TGTGGAATTTGTAGATACTTTTTGGTT 58.081 29.630 0.00 0.00 0.00 3.67
3727 7705 5.293569 CGTGGAATTGATAGGTTTCAGGTAC 59.706 44.000 0.00 0.00 0.00 3.34
3728 7706 6.177610 GTGGAATTGATAGGTTTCAGGTACA 58.822 40.000 0.00 0.00 0.00 2.90
3729 7707 6.316390 GTGGAATTGATAGGTTTCAGGTACAG 59.684 42.308 0.00 0.00 0.00 2.74
3750 7730 4.512944 CAGCGCCTATCATAATGTGACTTT 59.487 41.667 2.29 0.00 40.28 2.66
3751 7731 5.008019 CAGCGCCTATCATAATGTGACTTTT 59.992 40.000 2.29 0.00 40.28 2.27
3803 7783 3.335513 CACGCGCTGTGGGTTTAA 58.664 55.556 19.93 0.00 45.21 1.52
3805 7785 1.227734 ACGCGCTGTGGGTTTAAGT 60.228 52.632 5.73 0.00 41.69 2.24
3838 7818 6.620877 TCAGGTTCTGGTGAAGTTACATAT 57.379 37.500 0.00 0.00 32.15 1.78
3858 7852 1.275291 TGCTTCTAAACCTCGACCTGG 59.725 52.381 0.00 0.00 0.00 4.45
3866 7860 2.286523 CCTCGACCTGGCCTCTTGT 61.287 63.158 3.32 0.00 0.00 3.16
3868 7862 0.895530 CTCGACCTGGCCTCTTGTAA 59.104 55.000 3.32 0.00 0.00 2.41
3876 7870 2.622942 CTGGCCTCTTGTAACTTTTGCA 59.377 45.455 3.32 0.00 0.00 4.08
3878 7872 2.288213 GGCCTCTTGTAACTTTTGCACC 60.288 50.000 0.00 0.00 0.00 5.01
3894 7888 1.740585 GCACCGTGTATGCCACAATTA 59.259 47.619 0.00 0.00 44.78 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 204 0.251297 CCCTTGCCCACATGTTCTCA 60.251 55.000 0.00 0.00 0.00 3.27
850 4594 3.740764 GCATGTTGGTTGGCTCTTCAAAA 60.741 43.478 0.00 0.00 0.00 2.44
889 4635 6.764085 TGAATAATAATGGTGTGAAGTACGGG 59.236 38.462 0.00 0.00 0.00 5.28
958 4704 2.164624 ACCTCATCTCGTAGCAACTGAC 59.835 50.000 0.00 0.00 0.00 3.51
1125 4886 4.243270 AGCTAACCTTTCACGATGTACAC 58.757 43.478 0.00 0.00 0.00 2.90
1154 4915 2.414559 GCGCAGAATAACAACAGCACAT 60.415 45.455 0.30 0.00 0.00 3.21
1161 4922 6.772078 ACATAAACTAGCGCAGAATAACAAC 58.228 36.000 11.47 0.00 0.00 3.32
1216 4977 2.158460 TCGAGGATCAGAGGCTGGAATA 60.158 50.000 0.00 0.00 33.17 1.75
1219 4980 0.033109 TTCGAGGATCAGAGGCTGGA 60.033 55.000 0.00 0.00 33.17 3.86
1287 5054 1.975680 AGAAACAGAGGCCGGTCTTTA 59.024 47.619 11.49 0.00 0.00 1.85
1288 5055 0.765510 AGAAACAGAGGCCGGTCTTT 59.234 50.000 11.49 0.00 0.00 2.52
1290 5057 0.321996 GAAGAAACAGAGGCCGGTCT 59.678 55.000 9.26 9.26 0.00 3.85
1292 5059 0.250338 GTGAAGAAACAGAGGCCGGT 60.250 55.000 1.90 0.00 0.00 5.28
1293 5060 0.250295 TGTGAAGAAACAGAGGCCGG 60.250 55.000 0.00 0.00 0.00 6.13
1294 5061 3.305709 TGTGAAGAAACAGAGGCCG 57.694 52.632 0.00 0.00 0.00 6.13
1307 5074 2.241176 ACAGTTCCTTCAACCCTGTGAA 59.759 45.455 0.00 0.00 35.28 3.18
1308 5075 1.843851 ACAGTTCCTTCAACCCTGTGA 59.156 47.619 0.00 0.00 35.28 3.58
1309 5076 2.348411 ACAGTTCCTTCAACCCTGTG 57.652 50.000 0.00 0.00 35.28 3.66
1310 5077 2.422945 GGAACAGTTCCTTCAACCCTGT 60.423 50.000 23.40 0.00 46.57 4.00
1311 5078 2.230660 GGAACAGTTCCTTCAACCCTG 58.769 52.381 23.40 0.00 46.57 4.45
1312 5079 2.658807 GGAACAGTTCCTTCAACCCT 57.341 50.000 23.40 0.00 46.57 4.34
1331 5127 3.131046 AGGAAAGGCTCAAACACAAACAG 59.869 43.478 0.00 0.00 0.00 3.16
1447 5261 5.510671 ACACACTGAAATTTAGCTGAAACG 58.489 37.500 0.00 0.00 0.00 3.60
1479 5294 5.463061 ACAATCCAAATCAAGAAAAACAGCG 59.537 36.000 0.00 0.00 0.00 5.18
1634 5466 7.518161 TGTCATCTTGTGTTCACGAAATTATC 58.482 34.615 0.00 0.00 0.00 1.75
1821 5673 7.222417 TGAAGCATAACAACACAGTTTTCATTG 59.778 33.333 0.00 0.00 33.07 2.82
2000 5905 9.866655 TTCACAAAGATAGAATAGGCCATTTAT 57.133 29.630 5.01 0.00 0.00 1.40
2007 5915 8.897752 ACAGAATTTCACAAAGATAGAATAGGC 58.102 33.333 0.00 0.00 0.00 3.93
2275 6183 3.684788 CGGAACTTGGACTACATGAAAGG 59.315 47.826 0.00 0.00 0.00 3.11
2283 6191 0.606604 TGGAGCGGAACTTGGACTAC 59.393 55.000 0.00 0.00 0.00 2.73
2296 6204 8.290325 GGATCCTAGTAAATTAATTTTGGAGCG 58.710 37.037 18.14 7.76 0.00 5.03
2460 6372 3.807553 CCACATGGCCAAGTTTTTCTTT 58.192 40.909 11.76 0.00 33.63 2.52
2950 6868 4.391155 AGCGTATTCAGTCTCTAGGTAGG 58.609 47.826 0.00 0.00 0.00 3.18
2970 6888 6.604735 ACAACGAACTCATGGATTTATAGC 57.395 37.500 0.00 0.00 0.00 2.97
3286 7204 4.809673 TCACTGCTTGTATGTCTGTACAG 58.190 43.478 17.17 17.17 39.49 2.74
3310 7236 5.122396 GCAAGATGGTTGTACTAAGTTCAGG 59.878 44.000 0.00 0.00 0.00 3.86
3350 7279 6.325596 GCGTGCTCATATCATCTTATACTCA 58.674 40.000 0.00 0.00 0.00 3.41
3389 7318 5.292101 CGATAAAACAGGAGCAAGGACTAAG 59.708 44.000 0.00 0.00 0.00 2.18
3406 7335 3.410098 GCCAAAAGCGGCGATAAAA 57.590 47.368 12.98 0.00 43.52 1.52
3489 7436 7.928307 ATCTAAACAGACTATGCACAAACAT 57.072 32.000 0.00 0.00 0.00 2.71
3561 7536 8.660435 AGCCACCTACACATATTTTGTATCTAT 58.340 33.333 0.00 0.00 36.57 1.98
3568 7543 5.677091 GCTTCAGCCACCTACACATATTTTG 60.677 44.000 0.00 0.00 34.31 2.44
3573 7548 1.905894 TGCTTCAGCCACCTACACATA 59.094 47.619 0.00 0.00 41.18 2.29
3576 7551 0.875059 GTTGCTTCAGCCACCTACAC 59.125 55.000 0.00 0.00 41.18 2.90
3586 7563 2.286418 GGTTCTCGTGTTGTTGCTTCAG 60.286 50.000 0.00 0.00 0.00 3.02
3609 7586 4.799949 CACATGGGCAATTCAAATCTAACG 59.200 41.667 0.00 0.00 0.00 3.18
3616 7593 4.637387 AATTCCACATGGGCAATTCAAA 57.363 36.364 0.00 0.00 36.21 2.69
3626 7603 9.357652 CAAAAAGTATCTACAAATTCCACATGG 57.642 33.333 0.00 0.00 0.00 3.66
3657 7634 9.997172 ATCCTTTTTCCTTTGTAAGATAGGATT 57.003 29.630 0.00 0.00 37.87 3.01
3727 7705 3.657634 AGTCACATTATGATAGGCGCTG 58.342 45.455 7.64 0.00 40.28 5.18
3728 7706 4.342862 AAGTCACATTATGATAGGCGCT 57.657 40.909 7.64 0.00 40.28 5.92
3729 7707 5.424121 AAAAGTCACATTATGATAGGCGC 57.576 39.130 0.00 0.00 40.28 6.53
3803 7783 5.187967 CACCAGAACCTGAAACTAGGATACT 59.812 44.000 0.00 0.00 42.17 2.12
3805 7785 5.338632 TCACCAGAACCTGAAACTAGGATA 58.661 41.667 0.00 0.00 40.42 2.59
3838 7818 1.275291 CCAGGTCGAGGTTTAGAAGCA 59.725 52.381 0.00 0.00 0.00 3.91
3858 7852 2.604614 CGGTGCAAAAGTTACAAGAGGC 60.605 50.000 0.00 0.00 0.00 4.70
3866 7860 2.226912 GGCATACACGGTGCAAAAGTTA 59.773 45.455 8.30 0.00 44.25 2.24
3868 7862 0.596082 GGCATACACGGTGCAAAAGT 59.404 50.000 8.30 0.00 44.25 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.