Multiple sequence alignment - TraesCS7D01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G008700 chr7D 100.000 5326 0 0 1 5326 4203109 4197784 0.000000e+00 9836
1 TraesCS7D01G008700 chr7D 87.360 894 106 5 1713 2604 4269766 4268878 0.000000e+00 1018
2 TraesCS7D01G008700 chr7D 86.898 893 109 5 3594 4484 29551926 29552812 0.000000e+00 994
3 TraesCS7D01G008700 chr7D 86.456 886 111 6 3606 4484 4268732 4267849 0.000000e+00 963
4 TraesCS7D01G008700 chr7D 85.778 893 122 5 1713 2604 29550960 29551848 0.000000e+00 941
5 TraesCS7D01G008700 chr7D 79.264 897 148 19 1706 2599 4794063 4794924 4.590000e-165 592
6 TraesCS7D01G008700 chr7D 76.350 685 147 13 3616 4289 29600186 29600866 2.360000e-93 353
7 TraesCS7D01G008700 chr7D 75.683 695 96 37 898 1583 29549954 29550584 4.060000e-71 279
8 TraesCS7D01G008700 chr7D 82.927 287 27 12 1306 1582 4270417 4270143 6.890000e-59 239
9 TraesCS7D01G008700 chr7D 95.000 80 4 0 1331 1410 29405375 29405296 5.600000e-25 126
10 TraesCS7D01G008700 chr7A 93.205 2340 107 32 656 2966 3986906 3984590 0.000000e+00 3393
11 TraesCS7D01G008700 chr7A 93.442 2211 122 16 3127 5326 3984352 3982154 0.000000e+00 3258
12 TraesCS7D01G008700 chr7A 86.398 919 118 4 3568 4484 29785997 29786910 0.000000e+00 998
13 TraesCS7D01G008700 chr7A 86.020 887 121 2 1718 2604 4016254 4015371 0.000000e+00 948
14 TraesCS7D01G008700 chr7A 85.779 886 117 6 3606 4484 4015227 4014344 0.000000e+00 929
15 TraesCS7D01G008700 chr7A 85.202 892 129 3 1713 2604 29785044 29785932 0.000000e+00 913
16 TraesCS7D01G008700 chr7A 78.775 702 78 38 898 1582 4017270 4016623 6.420000e-109 405
17 TraesCS7D01G008700 chr7A 77.863 655 133 8 3626 4277 4252803 4252158 3.870000e-106 396
18 TraesCS7D01G008700 chr7A 78.541 233 36 7 297 516 4017774 4017543 2.000000e-29 141
19 TraesCS7D01G008700 chr7A 93.750 80 5 0 1331 1410 29665080 29665001 2.610000e-23 121
20 TraesCS7D01G008700 chr4A 91.616 1825 94 20 2965 4766 739417368 739419156 0.000000e+00 2468
21 TraesCS7D01G008700 chr4A 93.189 1292 49 17 1678 2958 739416063 739417326 0.000000e+00 1862
22 TraesCS7D01G008700 chr4A 87.925 1383 110 28 311 1655 739414711 739416074 0.000000e+00 1576
23 TraesCS7D01G008700 chr4A 87.767 891 104 4 1715 2604 739311314 739312200 0.000000e+00 1037
24 TraesCS7D01G008700 chr4A 85.403 918 127 5 3568 4484 739312903 739313814 0.000000e+00 946
25 TraesCS7D01G008700 chr4A 89.512 410 30 6 4751 5160 739419450 739419846 1.710000e-139 507
26 TraesCS7D01G008700 chr4A 77.438 882 168 18 1718 2597 739273626 739274478 1.030000e-136 497
27 TraesCS7D01G008700 chr4A 77.151 674 143 11 3616 4282 739275471 739276140 1.080000e-101 381
28 TraesCS7D01G008700 chr4A 77.620 706 86 35 898 1584 739310215 739310867 3.920000e-96 363
29 TraesCS7D01G008700 chr4A 82.943 299 30 11 3 280 739405146 739405444 3.180000e-62 250
30 TraesCS7D01G008700 chr4A 85.976 164 17 5 296 454 739309517 739309679 2.550000e-38 171
31 TraesCS7D01G008700 chr4A 75.329 304 54 16 1113 1410 739129405 739129693 5.600000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G008700 chr7D 4197784 4203109 5325 True 9836.00 9836 100.000000 1 5326 1 chr7D.!!$R1 5325
1 TraesCS7D01G008700 chr7D 4267849 4270417 2568 True 740.00 1018 85.581000 1306 4484 3 chr7D.!!$R3 3178
2 TraesCS7D01G008700 chr7D 29549954 29552812 2858 False 738.00 994 82.786333 898 4484 3 chr7D.!!$F3 3586
3 TraesCS7D01G008700 chr7D 4794063 4794924 861 False 592.00 592 79.264000 1706 2599 1 chr7D.!!$F1 893
4 TraesCS7D01G008700 chr7D 29600186 29600866 680 False 353.00 353 76.350000 3616 4289 1 chr7D.!!$F2 673
5 TraesCS7D01G008700 chr7A 3982154 3986906 4752 True 3325.50 3393 93.323500 656 5326 2 chr7A.!!$R3 4670
6 TraesCS7D01G008700 chr7A 29785044 29786910 1866 False 955.50 998 85.800000 1713 4484 2 chr7A.!!$F1 2771
7 TraesCS7D01G008700 chr7A 4014344 4017774 3430 True 605.75 948 82.278750 297 4484 4 chr7A.!!$R4 4187
8 TraesCS7D01G008700 chr7A 4252158 4252803 645 True 396.00 396 77.863000 3626 4277 1 chr7A.!!$R1 651
9 TraesCS7D01G008700 chr4A 739414711 739419846 5135 False 1603.25 2468 90.560500 311 5160 4 chr4A.!!$F5 4849
10 TraesCS7D01G008700 chr4A 739309517 739313814 4297 False 629.25 1037 84.191500 296 4484 4 chr4A.!!$F4 4188
11 TraesCS7D01G008700 chr4A 739273626 739276140 2514 False 439.00 497 77.294500 1718 4282 2 chr4A.!!$F3 2564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.041839 GTCTCTTGCAAGCACACGTG 60.042 55.0 21.99 15.48 0.0 4.49 F
1437 1827 0.179000 CCAGTTCATCCTCCCTTCGG 59.821 60.0 0.00 0.00 0.0 4.30 F
2736 3630 0.036732 GATCCTTGGTGTGACAGCCA 59.963 55.0 12.66 7.51 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1962 0.107508 ACCGTTGGGATCTGCATGAG 60.108 55.0 0.00 0.00 36.97 2.90 R
3120 4148 0.033503 TCATGCACCTACCTCGAGGA 60.034 55.0 37.69 19.49 39.15 3.71 R
4408 5786 2.350057 AGTGATAGGCAGAGTCGCTA 57.650 50.0 6.86 0.00 31.46 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.656559 CTGCATCATGTCGTCATATGGA 58.343 45.455 2.13 1.63 32.47 3.41
22 23 4.060205 CTGCATCATGTCGTCATATGGAA 58.940 43.478 2.13 0.00 32.47 3.53
23 24 3.809279 TGCATCATGTCGTCATATGGAAC 59.191 43.478 2.13 0.00 32.47 3.62
24 25 3.809279 GCATCATGTCGTCATATGGAACA 59.191 43.478 2.13 5.63 35.50 3.18
25 26 4.453478 GCATCATGTCGTCATATGGAACAT 59.547 41.667 2.13 7.63 35.89 2.71
26 27 5.049198 GCATCATGTCGTCATATGGAACATT 60.049 40.000 12.78 2.17 35.89 2.71
27 28 6.513884 GCATCATGTCGTCATATGGAACATTT 60.514 38.462 12.78 5.01 35.89 2.32
28 29 6.603237 TCATGTCGTCATATGGAACATTTC 57.397 37.500 12.78 0.00 35.89 2.17
29 30 6.348498 TCATGTCGTCATATGGAACATTTCT 58.652 36.000 12.78 0.00 35.89 2.52
30 31 6.823182 TCATGTCGTCATATGGAACATTTCTT 59.177 34.615 12.78 0.00 35.89 2.52
31 32 7.984617 TCATGTCGTCATATGGAACATTTCTTA 59.015 33.333 12.78 0.41 35.89 2.10
32 33 8.777413 CATGTCGTCATATGGAACATTTCTTAT 58.223 33.333 12.78 0.00 35.89 1.73
40 41 4.196193 TGGAACATTTCTTATAGGCCACG 58.804 43.478 5.01 0.00 0.00 4.94
41 42 3.003378 GGAACATTTCTTATAGGCCACGC 59.997 47.826 5.01 0.00 0.00 5.34
42 43 3.275617 ACATTTCTTATAGGCCACGCA 57.724 42.857 5.01 0.00 0.00 5.24
43 44 3.616219 ACATTTCTTATAGGCCACGCAA 58.384 40.909 5.01 0.00 0.00 4.85
44 45 4.207165 ACATTTCTTATAGGCCACGCAAT 58.793 39.130 5.01 0.00 0.00 3.56
45 46 5.373222 ACATTTCTTATAGGCCACGCAATA 58.627 37.500 5.01 0.00 0.00 1.90
46 47 5.470098 ACATTTCTTATAGGCCACGCAATAG 59.530 40.000 5.01 0.00 0.00 1.73
47 48 4.682778 TTCTTATAGGCCACGCAATAGT 57.317 40.909 5.01 0.00 0.00 2.12
48 49 4.252971 TCTTATAGGCCACGCAATAGTC 57.747 45.455 5.01 0.00 0.00 2.59
49 50 3.895656 TCTTATAGGCCACGCAATAGTCT 59.104 43.478 5.01 0.00 0.00 3.24
50 51 2.821991 ATAGGCCACGCAATAGTCTC 57.178 50.000 5.01 0.00 0.00 3.36
51 52 1.776662 TAGGCCACGCAATAGTCTCT 58.223 50.000 5.01 0.00 0.00 3.10
52 53 0.905357 AGGCCACGCAATAGTCTCTT 59.095 50.000 5.01 0.00 0.00 2.85
53 54 1.009829 GGCCACGCAATAGTCTCTTG 58.990 55.000 0.00 0.00 0.00 3.02
54 55 0.375106 GCCACGCAATAGTCTCTTGC 59.625 55.000 11.87 11.87 44.32 4.01
60 61 3.128465 GCAATAGTCTCTTGCAAGCAC 57.872 47.619 21.99 18.85 46.44 4.40
61 62 2.485426 GCAATAGTCTCTTGCAAGCACA 59.515 45.455 21.99 11.02 46.44 4.57
62 63 3.669023 GCAATAGTCTCTTGCAAGCACAC 60.669 47.826 21.99 16.14 46.44 3.82
63 64 1.783284 TAGTCTCTTGCAAGCACACG 58.217 50.000 21.99 7.29 0.00 4.49
64 65 0.179073 AGTCTCTTGCAAGCACACGT 60.179 50.000 21.99 2.63 0.00 4.49
65 66 0.041839 GTCTCTTGCAAGCACACGTG 60.042 55.000 21.99 15.48 0.00 4.49
66 67 0.461870 TCTCTTGCAAGCACACGTGT 60.462 50.000 21.99 17.22 0.00 4.49
78 79 3.479505 CACACGTGTGTTCCTTTTCAA 57.520 42.857 35.03 0.00 42.83 2.69
79 80 4.027572 CACACGTGTGTTCCTTTTCAAT 57.972 40.909 35.03 0.00 42.83 2.57
80 81 3.790820 CACACGTGTGTTCCTTTTCAATG 59.209 43.478 35.03 9.37 42.83 2.82
81 82 3.442273 ACACGTGTGTTCCTTTTCAATGT 59.558 39.130 22.71 0.00 41.83 2.71
82 83 4.636648 ACACGTGTGTTCCTTTTCAATGTA 59.363 37.500 22.71 0.00 41.83 2.29
83 84 5.204833 CACGTGTGTTCCTTTTCAATGTAG 58.795 41.667 7.58 0.00 0.00 2.74
84 85 4.879545 ACGTGTGTTCCTTTTCAATGTAGT 59.120 37.500 0.00 0.00 0.00 2.73
85 86 5.355910 ACGTGTGTTCCTTTTCAATGTAGTT 59.644 36.000 0.00 0.00 0.00 2.24
86 87 5.681105 CGTGTGTTCCTTTTCAATGTAGTTG 59.319 40.000 0.00 0.00 39.25 3.16
87 88 5.458779 GTGTGTTCCTTTTCAATGTAGTTGC 59.541 40.000 0.00 0.00 37.74 4.17
88 89 5.359576 TGTGTTCCTTTTCAATGTAGTTGCT 59.640 36.000 0.00 0.00 37.74 3.91
89 90 5.915196 GTGTTCCTTTTCAATGTAGTTGCTC 59.085 40.000 0.00 0.00 37.74 4.26
90 91 5.592282 TGTTCCTTTTCAATGTAGTTGCTCA 59.408 36.000 0.00 0.00 37.74 4.26
91 92 6.265196 TGTTCCTTTTCAATGTAGTTGCTCAT 59.735 34.615 0.00 0.00 37.74 2.90
92 93 7.446931 TGTTCCTTTTCAATGTAGTTGCTCATA 59.553 33.333 0.00 0.00 37.74 2.15
93 94 7.994425 TCCTTTTCAATGTAGTTGCTCATAA 57.006 32.000 0.00 0.00 37.74 1.90
94 95 7.816640 TCCTTTTCAATGTAGTTGCTCATAAC 58.183 34.615 0.00 0.00 37.74 1.89
95 96 7.029563 CCTTTTCAATGTAGTTGCTCATAACC 58.970 38.462 0.00 0.00 37.74 2.85
96 97 7.094205 CCTTTTCAATGTAGTTGCTCATAACCT 60.094 37.037 0.00 0.00 37.74 3.50
97 98 6.985188 TTCAATGTAGTTGCTCATAACCTC 57.015 37.500 0.00 0.00 37.74 3.85
98 99 6.299805 TCAATGTAGTTGCTCATAACCTCT 57.700 37.500 0.00 0.00 37.74 3.69
99 100 6.711277 TCAATGTAGTTGCTCATAACCTCTT 58.289 36.000 0.00 0.00 37.74 2.85
100 101 6.818644 TCAATGTAGTTGCTCATAACCTCTTC 59.181 38.462 0.00 0.00 37.74 2.87
101 102 5.738619 TGTAGTTGCTCATAACCTCTTCA 57.261 39.130 0.00 0.00 0.00 3.02
102 103 6.109156 TGTAGTTGCTCATAACCTCTTCAA 57.891 37.500 0.00 0.00 0.00 2.69
103 104 5.932303 TGTAGTTGCTCATAACCTCTTCAAC 59.068 40.000 0.00 0.00 34.31 3.18
104 105 4.973168 AGTTGCTCATAACCTCTTCAACA 58.027 39.130 0.00 0.00 35.95 3.33
105 106 5.376625 AGTTGCTCATAACCTCTTCAACAA 58.623 37.500 0.00 0.00 35.95 2.83
106 107 5.471456 AGTTGCTCATAACCTCTTCAACAAG 59.529 40.000 0.00 0.00 35.95 3.16
107 108 4.973168 TGCTCATAACCTCTTCAACAAGT 58.027 39.130 0.00 0.00 0.00 3.16
108 109 5.376625 TGCTCATAACCTCTTCAACAAGTT 58.623 37.500 0.00 0.00 0.00 2.66
109 110 5.827797 TGCTCATAACCTCTTCAACAAGTTT 59.172 36.000 0.00 0.00 0.00 2.66
110 111 6.995686 TGCTCATAACCTCTTCAACAAGTTTA 59.004 34.615 0.00 0.00 0.00 2.01
111 112 7.173218 TGCTCATAACCTCTTCAACAAGTTTAG 59.827 37.037 0.00 0.00 0.00 1.85
112 113 7.173390 GCTCATAACCTCTTCAACAAGTTTAGT 59.827 37.037 0.00 0.00 0.00 2.24
113 114 8.974060 TCATAACCTCTTCAACAAGTTTAGTT 57.026 30.769 0.00 0.00 0.00 2.24
114 115 9.403583 TCATAACCTCTTCAACAAGTTTAGTTT 57.596 29.630 0.00 0.00 0.00 2.66
115 116 9.665264 CATAACCTCTTCAACAAGTTTAGTTTC 57.335 33.333 0.00 0.00 0.00 2.78
116 117 6.694877 ACCTCTTCAACAAGTTTAGTTTCC 57.305 37.500 0.00 0.00 0.00 3.13
117 118 6.184789 ACCTCTTCAACAAGTTTAGTTTCCA 58.815 36.000 0.00 0.00 0.00 3.53
118 119 6.318900 ACCTCTTCAACAAGTTTAGTTTCCAG 59.681 38.462 0.00 0.00 0.00 3.86
119 120 6.542370 CCTCTTCAACAAGTTTAGTTTCCAGA 59.458 38.462 0.00 0.00 0.00 3.86
120 121 7.316544 TCTTCAACAAGTTTAGTTTCCAGAC 57.683 36.000 0.00 0.00 0.00 3.51
121 122 6.317893 TCTTCAACAAGTTTAGTTTCCAGACC 59.682 38.462 0.00 0.00 0.00 3.85
122 123 5.502079 TCAACAAGTTTAGTTTCCAGACCA 58.498 37.500 0.00 0.00 0.00 4.02
123 124 5.946972 TCAACAAGTTTAGTTTCCAGACCAA 59.053 36.000 0.00 0.00 0.00 3.67
124 125 6.605594 TCAACAAGTTTAGTTTCCAGACCAAT 59.394 34.615 0.00 0.00 0.00 3.16
125 126 7.123547 TCAACAAGTTTAGTTTCCAGACCAATT 59.876 33.333 0.00 0.00 0.00 2.32
126 127 7.418337 ACAAGTTTAGTTTCCAGACCAATTT 57.582 32.000 0.00 0.00 0.00 1.82
127 128 8.528044 ACAAGTTTAGTTTCCAGACCAATTTA 57.472 30.769 0.00 0.00 0.00 1.40
128 129 9.143155 ACAAGTTTAGTTTCCAGACCAATTTAT 57.857 29.630 0.00 0.00 0.00 1.40
129 130 9.981114 CAAGTTTAGTTTCCAGACCAATTTATT 57.019 29.630 0.00 0.00 0.00 1.40
134 135 9.990360 TTAGTTTCCAGACCAATTTATTTTTCC 57.010 29.630 0.00 0.00 0.00 3.13
135 136 8.262601 AGTTTCCAGACCAATTTATTTTTCCT 57.737 30.769 0.00 0.00 0.00 3.36
136 137 8.713971 AGTTTCCAGACCAATTTATTTTTCCTT 58.286 29.630 0.00 0.00 0.00 3.36
137 138 8.988934 GTTTCCAGACCAATTTATTTTTCCTTC 58.011 33.333 0.00 0.00 0.00 3.46
138 139 7.847711 TCCAGACCAATTTATTTTTCCTTCA 57.152 32.000 0.00 0.00 0.00 3.02
139 140 8.256356 TCCAGACCAATTTATTTTTCCTTCAA 57.744 30.769 0.00 0.00 0.00 2.69
140 141 8.709308 TCCAGACCAATTTATTTTTCCTTCAAA 58.291 29.630 0.00 0.00 0.00 2.69
141 142 9.506018 CCAGACCAATTTATTTTTCCTTCAAAT 57.494 29.630 0.00 0.00 0.00 2.32
153 154 8.885494 TTTTTCCTTCAAATATTGGTGTTCAG 57.115 30.769 0.00 0.00 0.00 3.02
154 155 7.595819 TTTCCTTCAAATATTGGTGTTCAGT 57.404 32.000 0.00 0.00 0.00 3.41
155 156 8.698973 TTTCCTTCAAATATTGGTGTTCAGTA 57.301 30.769 0.00 0.00 0.00 2.74
156 157 8.877864 TTCCTTCAAATATTGGTGTTCAGTAT 57.122 30.769 0.00 0.00 30.79 2.12
157 158 8.279970 TCCTTCAAATATTGGTGTTCAGTATG 57.720 34.615 0.00 0.00 30.15 2.39
158 159 6.974622 CCTTCAAATATTGGTGTTCAGTATGC 59.025 38.462 0.00 0.00 34.76 3.14
159 160 7.362834 CCTTCAAATATTGGTGTTCAGTATGCA 60.363 37.037 0.00 0.00 34.76 3.96
160 161 7.459795 TCAAATATTGGTGTTCAGTATGCAA 57.540 32.000 0.00 0.00 34.76 4.08
161 162 7.312154 TCAAATATTGGTGTTCAGTATGCAAC 58.688 34.615 0.00 0.00 34.76 4.17
162 163 3.829886 ATTGGTGTTCAGTATGCAACG 57.170 42.857 0.00 0.00 34.76 4.10
163 164 2.248280 TGGTGTTCAGTATGCAACGT 57.752 45.000 0.00 0.00 34.76 3.99
164 165 2.139917 TGGTGTTCAGTATGCAACGTC 58.860 47.619 0.00 0.00 34.76 4.34
165 166 2.224185 TGGTGTTCAGTATGCAACGTCT 60.224 45.455 0.00 0.00 34.76 4.18
166 167 2.412089 GGTGTTCAGTATGCAACGTCTC 59.588 50.000 0.00 0.00 34.76 3.36
167 168 3.318017 GTGTTCAGTATGCAACGTCTCT 58.682 45.455 0.00 0.00 34.76 3.10
168 169 3.741344 GTGTTCAGTATGCAACGTCTCTT 59.259 43.478 0.00 0.00 34.76 2.85
169 170 4.921515 GTGTTCAGTATGCAACGTCTCTTA 59.078 41.667 0.00 0.00 34.76 2.10
170 171 4.921515 TGTTCAGTATGCAACGTCTCTTAC 59.078 41.667 0.00 0.00 34.76 2.34
171 172 4.106029 TCAGTATGCAACGTCTCTTACC 57.894 45.455 0.00 0.00 34.76 2.85
172 173 3.508402 TCAGTATGCAACGTCTCTTACCA 59.492 43.478 0.00 0.00 34.76 3.25
173 174 3.859961 CAGTATGCAACGTCTCTTACCAG 59.140 47.826 0.00 0.00 0.00 4.00
174 175 3.762288 AGTATGCAACGTCTCTTACCAGA 59.238 43.478 0.00 0.00 0.00 3.86
175 176 2.433868 TGCAACGTCTCTTACCAGAC 57.566 50.000 0.00 0.00 39.68 3.51
176 177 1.684450 TGCAACGTCTCTTACCAGACA 59.316 47.619 0.00 0.00 42.75 3.41
177 178 2.059541 GCAACGTCTCTTACCAGACAC 58.940 52.381 0.00 0.00 42.75 3.67
178 179 2.316792 CAACGTCTCTTACCAGACACG 58.683 52.381 0.00 0.00 44.52 4.49
179 180 1.602311 ACGTCTCTTACCAGACACGT 58.398 50.000 0.50 0.50 46.27 4.49
180 181 2.701073 CGTCTCTTACCAGACACGTT 57.299 50.000 1.78 0.00 42.75 3.99
181 182 3.009301 CGTCTCTTACCAGACACGTTT 57.991 47.619 1.78 0.00 42.75 3.60
182 183 4.151258 CGTCTCTTACCAGACACGTTTA 57.849 45.455 1.78 0.00 42.75 2.01
183 184 4.539870 CGTCTCTTACCAGACACGTTTAA 58.460 43.478 1.78 0.00 42.75 1.52
184 185 4.615961 CGTCTCTTACCAGACACGTTTAAG 59.384 45.833 1.78 0.00 42.75 1.85
185 186 5.527033 GTCTCTTACCAGACACGTTTAAGT 58.473 41.667 0.00 0.00 42.25 2.24
186 187 5.628606 GTCTCTTACCAGACACGTTTAAGTC 59.371 44.000 0.00 0.00 42.25 3.01
187 188 4.874970 TCTTACCAGACACGTTTAAGTCC 58.125 43.478 0.51 0.00 35.38 3.85
188 189 2.144482 ACCAGACACGTTTAAGTCCG 57.856 50.000 0.51 0.00 35.38 4.79
189 190 1.269936 ACCAGACACGTTTAAGTCCGG 60.270 52.381 0.00 0.00 38.11 5.14
190 191 1.269936 CCAGACACGTTTAAGTCCGGT 60.270 52.381 0.00 0.00 35.38 5.28
191 192 1.790623 CAGACACGTTTAAGTCCGGTG 59.209 52.381 0.00 0.00 35.38 4.94
192 193 0.509929 GACACGTTTAAGTCCGGTGC 59.490 55.000 0.00 0.00 0.00 5.01
193 194 0.179078 ACACGTTTAAGTCCGGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
194 195 0.938713 CACGTTTAAGTCCGGTGCAA 59.061 50.000 0.00 0.00 0.00 4.08
195 196 1.331138 CACGTTTAAGTCCGGTGCAAA 59.669 47.619 0.00 0.00 0.00 3.68
196 197 2.015587 ACGTTTAAGTCCGGTGCAAAA 58.984 42.857 0.00 0.00 0.00 2.44
197 198 2.422832 ACGTTTAAGTCCGGTGCAAAAA 59.577 40.909 0.00 0.00 0.00 1.94
198 199 2.784928 CGTTTAAGTCCGGTGCAAAAAC 59.215 45.455 0.00 6.72 0.00 2.43
199 200 3.731264 CGTTTAAGTCCGGTGCAAAAACA 60.731 43.478 0.00 0.00 0.00 2.83
200 201 4.364860 GTTTAAGTCCGGTGCAAAAACAT 58.635 39.130 0.00 0.00 0.00 2.71
201 202 2.507339 AAGTCCGGTGCAAAAACATG 57.493 45.000 0.00 0.00 0.00 3.21
202 203 1.398692 AGTCCGGTGCAAAAACATGT 58.601 45.000 0.00 0.00 0.00 3.21
203 204 1.066908 AGTCCGGTGCAAAAACATGTG 59.933 47.619 0.00 0.00 0.00 3.21
204 205 1.107114 TCCGGTGCAAAAACATGTGT 58.893 45.000 0.00 0.00 0.00 3.72
205 206 1.478510 TCCGGTGCAAAAACATGTGTT 59.521 42.857 0.00 0.00 40.50 3.32
206 207 1.857837 CCGGTGCAAAAACATGTGTTC 59.142 47.619 0.63 0.00 37.25 3.18
207 208 2.481104 CCGGTGCAAAAACATGTGTTCT 60.481 45.455 0.63 0.00 37.25 3.01
208 209 3.186119 CGGTGCAAAAACATGTGTTCTT 58.814 40.909 0.63 0.00 37.25 2.52
209 210 3.616379 CGGTGCAAAAACATGTGTTCTTT 59.384 39.130 0.63 0.00 37.25 2.52
210 211 4.092675 CGGTGCAAAAACATGTGTTCTTTT 59.907 37.500 0.63 0.87 37.25 2.27
211 212 5.390356 CGGTGCAAAAACATGTGTTCTTTTT 60.390 36.000 0.63 0.48 37.25 1.94
212 213 6.020984 GGTGCAAAAACATGTGTTCTTTTTC 58.979 36.000 0.63 0.00 37.25 2.29
213 214 6.348050 GGTGCAAAAACATGTGTTCTTTTTCA 60.348 34.615 0.63 2.01 37.25 2.69
214 215 7.074502 GTGCAAAAACATGTGTTCTTTTTCAA 58.925 30.769 0.63 0.00 37.25 2.69
215 216 7.059374 GTGCAAAAACATGTGTTCTTTTTCAAC 59.941 33.333 0.63 1.19 37.25 3.18
216 217 6.246125 GCAAAAACATGTGTTCTTTTTCAACG 59.754 34.615 0.63 0.00 37.25 4.10
217 218 7.287229 CAAAAACATGTGTTCTTTTTCAACGT 58.713 30.769 0.63 0.00 37.25 3.99
218 219 8.428536 CAAAAACATGTGTTCTTTTTCAACGTA 58.571 29.630 0.63 0.00 37.25 3.57
219 220 7.734538 AAACATGTGTTCTTTTTCAACGTAG 57.265 32.000 0.00 0.00 37.25 3.51
220 221 6.848451 AACATGTGTTCTTTTTCAACGTAGT 58.152 32.000 0.00 0.00 36.02 2.73
221 222 7.309920 AACATGTGTTCTTTTTCAACGTAGTT 58.690 30.769 0.00 0.00 43.53 2.24
222 223 7.810759 AACATGTGTTCTTTTTCAACGTAGTTT 59.189 29.630 0.00 0.00 40.68 2.66
236 237 5.479124 ACGTAGTTTGACCATAACCTCTT 57.521 39.130 0.00 0.00 37.78 2.85
237 238 5.861727 ACGTAGTTTGACCATAACCTCTTT 58.138 37.500 0.00 0.00 37.78 2.52
238 239 5.699458 ACGTAGTTTGACCATAACCTCTTTG 59.301 40.000 0.00 0.00 37.78 2.77
239 240 5.929992 CGTAGTTTGACCATAACCTCTTTGA 59.070 40.000 0.00 0.00 0.00 2.69
240 241 6.425721 CGTAGTTTGACCATAACCTCTTTGAA 59.574 38.462 0.00 0.00 0.00 2.69
241 242 6.884280 AGTTTGACCATAACCTCTTTGAAG 57.116 37.500 0.00 0.00 0.00 3.02
242 243 6.601332 AGTTTGACCATAACCTCTTTGAAGA 58.399 36.000 0.00 0.00 0.00 2.87
243 244 7.060421 AGTTTGACCATAACCTCTTTGAAGAA 58.940 34.615 0.00 0.00 34.03 2.52
244 245 6.877611 TTGACCATAACCTCTTTGAAGAAC 57.122 37.500 0.00 0.00 34.03 3.01
245 246 5.935945 TGACCATAACCTCTTTGAAGAACA 58.064 37.500 0.00 0.00 34.03 3.18
246 247 6.542821 TGACCATAACCTCTTTGAAGAACAT 58.457 36.000 0.00 0.00 34.03 2.71
247 248 6.655003 TGACCATAACCTCTTTGAAGAACATC 59.345 38.462 0.00 0.00 34.03 3.06
248 249 6.784031 ACCATAACCTCTTTGAAGAACATCT 58.216 36.000 0.00 0.00 34.03 2.90
249 250 7.234355 ACCATAACCTCTTTGAAGAACATCTT 58.766 34.615 0.00 0.00 39.87 2.40
250 251 8.383175 ACCATAACCTCTTTGAAGAACATCTTA 58.617 33.333 0.00 0.00 36.73 2.10
251 252 9.401058 CCATAACCTCTTTGAAGAACATCTTAT 57.599 33.333 0.00 0.00 36.73 1.73
253 254 6.749923 ACCTCTTTGAAGAACATCTTATGC 57.250 37.500 0.00 0.00 36.73 3.14
254 255 5.352569 ACCTCTTTGAAGAACATCTTATGCG 59.647 40.000 0.00 0.00 36.73 4.73
255 256 5.582269 CCTCTTTGAAGAACATCTTATGCGA 59.418 40.000 0.00 0.00 36.73 5.10
256 257 6.259608 CCTCTTTGAAGAACATCTTATGCGAT 59.740 38.462 0.00 0.00 36.73 4.58
257 258 7.008440 TCTTTGAAGAACATCTTATGCGATG 57.992 36.000 0.00 0.00 44.88 3.84
258 259 6.818142 TCTTTGAAGAACATCTTATGCGATGA 59.182 34.615 11.58 0.00 42.92 2.92
259 260 5.973651 TGAAGAACATCTTATGCGATGAC 57.026 39.130 11.58 6.52 42.63 3.06
260 261 5.418676 TGAAGAACATCTTATGCGATGACA 58.581 37.500 11.58 0.00 42.63 3.58
261 262 5.521372 TGAAGAACATCTTATGCGATGACAG 59.479 40.000 11.58 0.00 42.63 3.51
262 263 5.268118 AGAACATCTTATGCGATGACAGA 57.732 39.130 11.58 0.00 42.63 3.41
263 264 5.664457 AGAACATCTTATGCGATGACAGAA 58.336 37.500 11.58 0.00 42.63 3.02
264 265 5.521735 AGAACATCTTATGCGATGACAGAAC 59.478 40.000 11.58 0.00 42.63 3.01
265 266 4.122776 ACATCTTATGCGATGACAGAACC 58.877 43.478 11.58 0.00 42.63 3.62
266 267 3.885724 TCTTATGCGATGACAGAACCA 57.114 42.857 0.00 0.00 0.00 3.67
267 268 4.406648 TCTTATGCGATGACAGAACCAT 57.593 40.909 0.00 0.00 0.00 3.55
268 269 4.122046 TCTTATGCGATGACAGAACCATG 58.878 43.478 0.00 0.00 0.00 3.66
269 270 2.696989 ATGCGATGACAGAACCATGA 57.303 45.000 0.00 0.00 0.00 3.07
270 271 2.470983 TGCGATGACAGAACCATGAA 57.529 45.000 0.00 0.00 0.00 2.57
271 272 2.777094 TGCGATGACAGAACCATGAAA 58.223 42.857 0.00 0.00 0.00 2.69
272 273 3.346315 TGCGATGACAGAACCATGAAAT 58.654 40.909 0.00 0.00 0.00 2.17
273 274 4.512484 TGCGATGACAGAACCATGAAATA 58.488 39.130 0.00 0.00 0.00 1.40
274 275 4.571984 TGCGATGACAGAACCATGAAATAG 59.428 41.667 0.00 0.00 0.00 1.73
275 276 4.811024 GCGATGACAGAACCATGAAATAGA 59.189 41.667 0.00 0.00 0.00 1.98
276 277 5.277058 GCGATGACAGAACCATGAAATAGAC 60.277 44.000 0.00 0.00 0.00 2.59
277 278 5.235186 CGATGACAGAACCATGAAATAGACC 59.765 44.000 0.00 0.00 0.00 3.85
278 279 4.843728 TGACAGAACCATGAAATAGACCC 58.156 43.478 0.00 0.00 0.00 4.46
279 280 4.288366 TGACAGAACCATGAAATAGACCCA 59.712 41.667 0.00 0.00 0.00 4.51
280 281 5.044919 TGACAGAACCATGAAATAGACCCAT 60.045 40.000 0.00 0.00 0.00 4.00
281 282 5.195940 ACAGAACCATGAAATAGACCCATG 58.804 41.667 0.00 0.00 37.87 3.66
282 283 4.037208 CAGAACCATGAAATAGACCCATGC 59.963 45.833 0.00 0.00 37.07 4.06
283 284 3.668141 ACCATGAAATAGACCCATGCA 57.332 42.857 0.00 0.00 37.07 3.96
284 285 4.188937 ACCATGAAATAGACCCATGCAT 57.811 40.909 0.00 0.00 37.07 3.96
285 286 4.147321 ACCATGAAATAGACCCATGCATC 58.853 43.478 0.00 0.00 37.07 3.91
286 287 4.141088 ACCATGAAATAGACCCATGCATCT 60.141 41.667 0.00 0.00 37.07 2.90
287 288 5.073554 ACCATGAAATAGACCCATGCATCTA 59.926 40.000 0.00 0.00 37.07 1.98
288 289 5.413833 CCATGAAATAGACCCATGCATCTAC 59.586 44.000 0.00 0.00 37.07 2.59
289 290 5.628797 TGAAATAGACCCATGCATCTACA 57.371 39.130 0.00 0.00 30.34 2.74
290 291 5.368145 TGAAATAGACCCATGCATCTACAC 58.632 41.667 0.00 0.00 30.34 2.90
291 292 5.104569 TGAAATAGACCCATGCATCTACACA 60.105 40.000 0.00 0.00 30.34 3.72
292 293 2.698855 AGACCCATGCATCTACACAC 57.301 50.000 0.00 0.00 0.00 3.82
293 294 2.191400 AGACCCATGCATCTACACACT 58.809 47.619 0.00 0.00 0.00 3.55
294 295 2.169352 AGACCCATGCATCTACACACTC 59.831 50.000 0.00 0.00 0.00 3.51
301 302 4.901197 TGCATCTACACACTCCCTTTTA 57.099 40.909 0.00 0.00 0.00 1.52
366 371 4.913335 AACGAACTCGGCATAATCTCTA 57.087 40.909 3.88 0.00 44.95 2.43
372 377 4.215908 ACTCGGCATAATCTCTAGGACAA 58.784 43.478 0.00 0.00 0.00 3.18
382 387 6.998968 AATCTCTAGGACAAGCAATTTCTG 57.001 37.500 0.00 0.00 0.00 3.02
390 395 4.562143 GGACAAGCAATTTCTGAAAGGCAT 60.562 41.667 23.05 13.78 0.00 4.40
406 411 0.953727 GCATATGAGGCGGCAAATCA 59.046 50.000 13.08 6.83 0.00 2.57
408 413 2.670229 GCATATGAGGCGGCAAATCATG 60.670 50.000 18.68 12.41 35.39 3.07
420 429 6.033341 GCGGCAAATCATGTAAAACATAAGA 58.967 36.000 0.00 0.00 36.53 2.10
460 469 8.504812 AACAAAATAAAAACCAATGCTGAAGT 57.495 26.923 0.00 0.00 0.00 3.01
470 729 5.564550 ACCAATGCTGAAGTAAGTCATTCT 58.435 37.500 0.00 0.00 0.00 2.40
523 785 6.127479 TGACACATAGGTTGATTTTATTGGCC 60.127 38.462 0.00 0.00 0.00 5.36
526 788 6.096705 CACATAGGTTGATTTTATTGGCCTGA 59.903 38.462 3.32 0.00 0.00 3.86
528 790 5.405935 AGGTTGATTTTATTGGCCTGAAC 57.594 39.130 3.32 0.00 0.00 3.18
533 795 7.821846 GGTTGATTTTATTGGCCTGAACATTTA 59.178 33.333 3.32 0.00 0.00 1.40
558 820 2.094545 GGGCAATAGGAACACAAGCTTG 60.095 50.000 24.84 24.84 0.00 4.01
564 826 6.317088 CAATAGGAACACAAGCTTGTACATG 58.683 40.000 30.67 20.54 39.91 3.21
610 878 1.539388 TGTTGATGAATCGCAACCACC 59.461 47.619 13.57 0.00 42.72 4.61
622 890 3.000727 CGCAACCACCTACTAAAAGGAG 58.999 50.000 0.00 0.00 39.15 3.69
623 891 3.556423 CGCAACCACCTACTAAAAGGAGT 60.556 47.826 0.00 0.00 39.15 3.85
631 899 1.153901 CTAAAAGGAGTCGCGGCGA 60.154 57.895 22.69 22.69 0.00 5.54
639 907 4.632458 GTCGCGGCGAGAGGATCC 62.632 72.222 27.15 8.31 36.23 3.36
705 997 2.932194 AGCAGAGGCCCAAGAGCA 60.932 61.111 0.00 0.00 42.56 4.26
706 998 2.438075 GCAGAGGCCCAAGAGCAG 60.438 66.667 0.00 0.00 0.00 4.24
707 999 3.076092 CAGAGGCCCAAGAGCAGT 58.924 61.111 0.00 0.00 0.00 4.40
727 1019 4.823442 CAGTAATGCCTTCTCATTGCCATA 59.177 41.667 0.00 0.00 39.04 2.74
811 1103 2.222707 GCGTGAGGTGTTTTTGTTTTGC 60.223 45.455 0.00 0.00 0.00 3.68
860 1152 3.606204 AACCCCAGCTGGTTCCAT 58.394 55.556 30.63 9.78 45.51 3.41
903 1203 1.423921 CCCCGAACCCCAGCTATAAAT 59.576 52.381 0.00 0.00 0.00 1.40
1102 1471 2.507944 CCAAGGGCATCGAGGAGG 59.492 66.667 0.00 0.00 0.00 4.30
1432 1822 2.276309 CTGCCCCAGTTCATCCTCCC 62.276 65.000 0.00 0.00 0.00 4.30
1437 1827 0.179000 CCAGTTCATCCTCCCTTCGG 59.821 60.000 0.00 0.00 0.00 4.30
1455 1845 5.880332 CCTTCGGTTAAATCTTCAGATCCAA 59.120 40.000 0.00 0.00 32.75 3.53
1519 1923 4.087892 TCGCTGCCTCTGCTTCCC 62.088 66.667 0.00 0.00 38.71 3.97
1558 1962 2.280186 CGGCATTCTCCGGCTACC 60.280 66.667 0.00 0.00 45.38 3.18
1594 2015 1.666872 GTCAGTACACGCACCACCC 60.667 63.158 0.00 0.00 0.00 4.61
1598 2019 1.227734 GTACACGCACCACCCAACT 60.228 57.895 0.00 0.00 0.00 3.16
1658 2081 9.725019 GATTCATCACCTGTGGAATATATTGTA 57.275 33.333 1.78 0.00 30.60 2.41
1659 2082 8.902540 TTCATCACCTGTGGAATATATTGTAC 57.097 34.615 1.78 2.55 0.00 2.90
1660 2083 8.262601 TCATCACCTGTGGAATATATTGTACT 57.737 34.615 1.78 0.00 0.00 2.73
1661 2084 9.374711 TCATCACCTGTGGAATATATTGTACTA 57.625 33.333 1.78 0.00 0.00 1.82
1662 2085 9.996554 CATCACCTGTGGAATATATTGTACTAA 57.003 33.333 1.78 0.00 0.00 2.24
1663 2086 9.998106 ATCACCTGTGGAATATATTGTACTAAC 57.002 33.333 1.78 0.00 0.00 2.34
1664 2087 9.209048 TCACCTGTGGAATATATTGTACTAACT 57.791 33.333 1.78 0.00 0.00 2.24
1729 2546 0.680921 CATCCATTGCAGGTCCGGTT 60.681 55.000 0.00 0.00 0.00 4.44
1831 2648 0.324943 CCGTGTCCAAGGACCTCATT 59.675 55.000 16.18 0.00 43.97 2.57
2201 3018 2.904434 TCCTACAAGACCAAGGACTTCC 59.096 50.000 0.83 0.00 34.46 3.46
2432 3249 3.678717 AAGTGGACGCCGATCGACG 62.679 63.158 22.35 22.35 41.67 5.12
2433 3250 4.170062 GTGGACGCCGATCGACGA 62.170 66.667 30.16 5.10 45.77 4.20
2621 3441 2.980548 TCACCCTACCCACACTAAAGT 58.019 47.619 0.00 0.00 0.00 2.66
2655 3475 9.749490 CACGATTGTCTTAATTTTACATTACGT 57.251 29.630 0.00 0.00 31.85 3.57
2704 3598 0.858583 GCACCGTTGGTTTTGCAATC 59.141 50.000 0.00 0.00 31.02 2.67
2727 3621 0.546598 GGTGGGGTAGATCCTTGGTG 59.453 60.000 0.00 0.00 36.25 4.17
2729 3623 1.065418 GTGGGGTAGATCCTTGGTGTG 60.065 57.143 0.00 0.00 36.25 3.82
2730 3624 1.203376 TGGGGTAGATCCTTGGTGTGA 60.203 52.381 0.00 0.00 36.25 3.58
2731 3625 1.209747 GGGGTAGATCCTTGGTGTGAC 59.790 57.143 0.00 0.00 36.25 3.67
2732 3626 1.906574 GGGTAGATCCTTGGTGTGACA 59.093 52.381 0.00 0.00 36.25 3.58
2733 3627 2.093447 GGGTAGATCCTTGGTGTGACAG 60.093 54.545 0.00 0.00 36.25 3.51
2734 3628 2.622436 GTAGATCCTTGGTGTGACAGC 58.378 52.381 8.00 8.00 0.00 4.40
2736 3630 0.036732 GATCCTTGGTGTGACAGCCA 59.963 55.000 12.66 7.51 0.00 4.75
2858 3776 0.392193 CTCTAGGCTGTGGGTTGCTG 60.392 60.000 0.00 0.00 0.00 4.41
3043 4001 6.791303 TGCATCGTATCAAAAAGTTTATCCC 58.209 36.000 0.00 0.00 0.00 3.85
3044 4002 6.375736 TGCATCGTATCAAAAAGTTTATCCCA 59.624 34.615 0.00 0.00 0.00 4.37
3045 4003 7.094162 TGCATCGTATCAAAAAGTTTATCCCAA 60.094 33.333 0.00 0.00 0.00 4.12
3271 4400 0.246635 ACTGTCGATGTAGTGCCCAC 59.753 55.000 0.00 0.00 0.00 4.61
3349 4484 1.729838 GTCAGTCGCACGTGGAGTC 60.730 63.158 18.88 0.00 0.00 3.36
3350 4485 2.430921 CAGTCGCACGTGGAGTCC 60.431 66.667 18.88 0.73 0.00 3.85
3351 4486 4.039357 AGTCGCACGTGGAGTCCG 62.039 66.667 18.88 11.89 34.81 4.79
3384 4745 2.346099 AACCGCACCAAATCAAATCG 57.654 45.000 0.00 0.00 0.00 3.34
3400 4761 2.674796 ATCGGGACTTTCTTCCTTCG 57.325 50.000 0.00 0.00 35.76 3.79
3414 4775 8.615878 TTTCTTCCTTCGAATCTTTGATGTTA 57.384 30.769 0.00 0.00 0.00 2.41
3415 4776 8.615878 TTCTTCCTTCGAATCTTTGATGTTAA 57.384 30.769 0.00 0.00 0.00 2.01
3442 4803 1.852280 GAAGCCTTTTTGTTCGTGTGC 59.148 47.619 0.00 0.00 0.00 4.57
3497 4858 6.311723 CGCGGCACCCTTTATATTAATTAAG 58.688 40.000 0.00 0.00 0.00 1.85
3557 4918 4.095782 TCATGATGTGAATGTGCACTCATG 59.904 41.667 25.55 25.55 44.52 3.07
3566 4927 0.585357 GTGCACTCATGATCGATGGC 59.415 55.000 10.32 0.00 32.26 4.40
3683 5045 1.299976 GAACCTCGTCCAATGGCCT 59.700 57.895 3.32 0.00 0.00 5.19
3699 5061 1.440893 CCTGTGGAGGAGCTCGATG 59.559 63.158 7.83 0.00 42.93 3.84
3773 5135 2.368878 GCCTTCCTCCCCCTCCAT 60.369 66.667 0.00 0.00 0.00 3.41
4157 5523 2.933287 ATGGGCGGGAGGTTGACA 60.933 61.111 0.00 0.00 0.00 3.58
4408 5786 3.100671 GGACAGTTGGAGATGGAGTACT 58.899 50.000 0.00 0.00 0.00 2.73
4518 5898 8.338986 GCTATGATGTTGATGATGATGATGATC 58.661 37.037 0.00 0.00 0.00 2.92
4709 6090 8.610248 TCGAAGATAGTTACATTGTTTTGGAA 57.390 30.769 0.00 0.00 0.00 3.53
4710 6091 9.226606 TCGAAGATAGTTACATTGTTTTGGAAT 57.773 29.630 0.00 0.00 0.00 3.01
4736 6117 6.591750 TTTTCACTTAAAATAATGCCGGGA 57.408 33.333 2.18 0.00 32.05 5.14
4762 6449 5.644977 TCCATATAATCTACTGCGTCTGG 57.355 43.478 0.00 0.00 0.00 3.86
4793 6480 1.073025 AGGACTGCACGGCATTTGA 59.927 52.632 0.00 0.00 38.13 2.69
4794 6481 0.957395 AGGACTGCACGGCATTTGAG 60.957 55.000 0.00 0.00 38.13 3.02
4795 6482 0.955428 GGACTGCACGGCATTTGAGA 60.955 55.000 0.00 0.00 38.13 3.27
4796 6483 0.874390 GACTGCACGGCATTTGAGAA 59.126 50.000 0.00 0.00 38.13 2.87
4797 6484 1.266718 GACTGCACGGCATTTGAGAAA 59.733 47.619 0.00 0.00 38.13 2.52
4887 6576 1.138464 GGTAGCAGGGCCTACTTACAC 59.862 57.143 12.49 4.03 38.18 2.90
4898 6587 4.139038 GCCTACTTACACCCAAACTTTGA 58.861 43.478 2.87 0.00 0.00 2.69
4899 6588 4.023450 GCCTACTTACACCCAAACTTTGAC 60.023 45.833 2.87 0.00 0.00 3.18
4937 6626 6.847567 TGGCTCCTGGACCTAATTATAAAGTA 59.152 38.462 13.91 0.00 0.00 2.24
5160 6851 5.457140 GGACATTTCAAAATCACGCTAACA 58.543 37.500 0.00 0.00 0.00 2.41
5162 6853 5.826586 ACATTTCAAAATCACGCTAACACA 58.173 33.333 0.00 0.00 0.00 3.72
5175 6866 3.990469 CGCTAACACAATGAGAGACAGTT 59.010 43.478 0.00 0.00 0.00 3.16
5185 6876 0.533755 AGAGACAGTTGCACCACAGC 60.534 55.000 0.00 0.00 0.00 4.40
5250 6941 7.419403 GGAATTTGATCATTGGCCCTAATCTTT 60.419 37.037 0.00 0.00 0.00 2.52
5251 6942 6.872585 TTTGATCATTGGCCCTAATCTTTT 57.127 33.333 0.00 0.00 0.00 2.27
5275 6966 5.446143 TTTTACACTCGGCAATTGAATGT 57.554 34.783 10.34 7.55 0.00 2.71
5278 6969 2.095768 ACACTCGGCAATTGAATGTTCG 60.096 45.455 10.34 2.88 0.00 3.95
5299 6990 0.038067 GCATGTTGCTGGCACATCAA 60.038 50.000 0.00 0.00 42.46 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.656559 TCCATATGACGACATGATGCAG 58.343 45.455 10.69 0.00 37.87 4.41
3 4 6.549912 AATGTTCCATATGACGACATGATG 57.450 37.500 10.69 9.58 37.87 3.07
5 6 6.348498 AGAAATGTTCCATATGACGACATGA 58.652 36.000 10.69 0.00 37.87 3.07
6 7 6.609237 AGAAATGTTCCATATGACGACATG 57.391 37.500 10.69 0.00 37.87 3.21
7 8 8.908786 ATAAGAAATGTTCCATATGACGACAT 57.091 30.769 3.65 5.56 40.16 3.06
8 9 9.476202 CTATAAGAAATGTTCCATATGACGACA 57.524 33.333 3.65 6.28 0.00 4.35
9 10 8.926710 CCTATAAGAAATGTTCCATATGACGAC 58.073 37.037 3.65 0.42 0.00 4.34
10 11 7.602644 GCCTATAAGAAATGTTCCATATGACGA 59.397 37.037 3.65 0.00 0.00 4.20
11 12 7.148407 GGCCTATAAGAAATGTTCCATATGACG 60.148 40.741 3.65 0.00 0.00 4.35
12 13 7.665559 TGGCCTATAAGAAATGTTCCATATGAC 59.334 37.037 3.32 0.00 0.00 3.06
13 14 7.665559 GTGGCCTATAAGAAATGTTCCATATGA 59.334 37.037 3.32 0.00 0.00 2.15
14 15 7.361201 CGTGGCCTATAAGAAATGTTCCATATG 60.361 40.741 3.32 0.00 0.00 1.78
15 16 6.655003 CGTGGCCTATAAGAAATGTTCCATAT 59.345 38.462 3.32 0.00 0.00 1.78
16 17 5.995282 CGTGGCCTATAAGAAATGTTCCATA 59.005 40.000 3.32 0.00 0.00 2.74
17 18 4.821805 CGTGGCCTATAAGAAATGTTCCAT 59.178 41.667 3.32 0.00 0.00 3.41
18 19 4.196193 CGTGGCCTATAAGAAATGTTCCA 58.804 43.478 3.32 0.00 0.00 3.53
19 20 3.003378 GCGTGGCCTATAAGAAATGTTCC 59.997 47.826 3.32 0.00 0.00 3.62
20 21 3.625764 TGCGTGGCCTATAAGAAATGTTC 59.374 43.478 3.32 0.00 0.00 3.18
21 22 3.616219 TGCGTGGCCTATAAGAAATGTT 58.384 40.909 3.32 0.00 0.00 2.71
22 23 3.275617 TGCGTGGCCTATAAGAAATGT 57.724 42.857 3.32 0.00 0.00 2.71
23 24 4.836125 ATTGCGTGGCCTATAAGAAATG 57.164 40.909 3.32 0.00 0.00 2.32
24 25 5.621193 ACTATTGCGTGGCCTATAAGAAAT 58.379 37.500 3.32 0.00 0.00 2.17
25 26 5.031066 ACTATTGCGTGGCCTATAAGAAA 57.969 39.130 3.32 0.00 0.00 2.52
26 27 4.344102 AGACTATTGCGTGGCCTATAAGAA 59.656 41.667 3.32 0.00 0.00 2.52
27 28 3.895656 AGACTATTGCGTGGCCTATAAGA 59.104 43.478 3.32 0.00 0.00 2.10
28 29 4.021894 AGAGACTATTGCGTGGCCTATAAG 60.022 45.833 3.32 0.00 0.00 1.73
29 30 3.895656 AGAGACTATTGCGTGGCCTATAA 59.104 43.478 3.32 0.00 0.00 0.98
30 31 3.497332 AGAGACTATTGCGTGGCCTATA 58.503 45.455 3.32 0.00 0.00 1.31
31 32 2.320781 AGAGACTATTGCGTGGCCTAT 58.679 47.619 3.32 0.00 0.00 2.57
32 33 1.776662 AGAGACTATTGCGTGGCCTA 58.223 50.000 3.32 0.00 0.00 3.93
33 34 0.905357 AAGAGACTATTGCGTGGCCT 59.095 50.000 3.32 0.00 0.00 5.19
34 35 1.009829 CAAGAGACTATTGCGTGGCC 58.990 55.000 0.00 0.00 0.00 5.36
35 36 0.375106 GCAAGAGACTATTGCGTGGC 59.625 55.000 18.24 0.00 43.15 5.01
41 42 3.424039 CGTGTGCTTGCAAGAGACTATTG 60.424 47.826 30.39 5.43 0.00 1.90
42 43 2.738846 CGTGTGCTTGCAAGAGACTATT 59.261 45.455 30.39 0.00 0.00 1.73
43 44 2.289072 ACGTGTGCTTGCAAGAGACTAT 60.289 45.455 30.39 7.69 0.00 2.12
44 45 1.068588 ACGTGTGCTTGCAAGAGACTA 59.931 47.619 30.39 12.34 0.00 2.59
45 46 0.179073 ACGTGTGCTTGCAAGAGACT 60.179 50.000 30.39 7.00 0.00 3.24
46 47 0.041839 CACGTGTGCTTGCAAGAGAC 60.042 55.000 30.39 23.08 0.00 3.36
47 48 0.461870 ACACGTGTGCTTGCAAGAGA 60.462 50.000 30.39 12.49 0.00 3.10
48 49 0.316442 CACACGTGTGCTTGCAAGAG 60.316 55.000 33.52 15.86 39.39 2.85
49 50 1.720894 CACACGTGTGCTTGCAAGA 59.279 52.632 33.52 12.25 39.39 3.02
50 51 4.290326 CACACGTGTGCTTGCAAG 57.710 55.556 33.52 22.44 39.39 4.01
60 61 4.027572 ACATTGAAAAGGAACACACGTG 57.972 40.909 15.48 15.48 0.00 4.49
61 62 4.879545 ACTACATTGAAAAGGAACACACGT 59.120 37.500 0.00 0.00 0.00 4.49
62 63 5.418310 ACTACATTGAAAAGGAACACACG 57.582 39.130 0.00 0.00 0.00 4.49
63 64 5.458779 GCAACTACATTGAAAAGGAACACAC 59.541 40.000 0.00 0.00 41.23 3.82
64 65 5.359576 AGCAACTACATTGAAAAGGAACACA 59.640 36.000 0.00 0.00 41.23 3.72
65 66 5.831997 AGCAACTACATTGAAAAGGAACAC 58.168 37.500 0.00 0.00 41.23 3.32
66 67 5.592282 TGAGCAACTACATTGAAAAGGAACA 59.408 36.000 0.00 0.00 41.23 3.18
67 68 6.072112 TGAGCAACTACATTGAAAAGGAAC 57.928 37.500 0.00 0.00 41.23 3.62
68 69 6.899393 ATGAGCAACTACATTGAAAAGGAA 57.101 33.333 0.00 0.00 41.23 3.36
69 70 7.094377 GGTTATGAGCAACTACATTGAAAAGGA 60.094 37.037 0.00 0.00 41.23 3.36
70 71 7.029563 GGTTATGAGCAACTACATTGAAAAGG 58.970 38.462 0.00 0.00 41.23 3.11
71 72 7.820648 AGGTTATGAGCAACTACATTGAAAAG 58.179 34.615 0.00 0.00 41.23 2.27
72 73 7.665559 AGAGGTTATGAGCAACTACATTGAAAA 59.334 33.333 0.00 0.00 41.23 2.29
73 74 7.168219 AGAGGTTATGAGCAACTACATTGAAA 58.832 34.615 0.00 0.00 41.23 2.69
74 75 6.711277 AGAGGTTATGAGCAACTACATTGAA 58.289 36.000 0.00 0.00 41.23 2.69
75 76 6.299805 AGAGGTTATGAGCAACTACATTGA 57.700 37.500 0.00 0.00 41.23 2.57
76 77 6.595326 TGAAGAGGTTATGAGCAACTACATTG 59.405 38.462 0.00 0.00 41.69 2.82
77 78 6.711277 TGAAGAGGTTATGAGCAACTACATT 58.289 36.000 0.00 0.00 0.00 2.71
78 79 6.299805 TGAAGAGGTTATGAGCAACTACAT 57.700 37.500 0.00 0.00 0.00 2.29
79 80 5.738619 TGAAGAGGTTATGAGCAACTACA 57.261 39.130 0.00 0.00 0.00 2.74
80 81 5.932303 TGTTGAAGAGGTTATGAGCAACTAC 59.068 40.000 0.00 0.00 36.17 2.73
81 82 6.109156 TGTTGAAGAGGTTATGAGCAACTA 57.891 37.500 0.00 0.00 36.17 2.24
82 83 4.973168 TGTTGAAGAGGTTATGAGCAACT 58.027 39.130 0.00 0.00 36.17 3.16
83 84 5.239525 ACTTGTTGAAGAGGTTATGAGCAAC 59.760 40.000 0.00 0.00 35.85 4.17
84 85 5.376625 ACTTGTTGAAGAGGTTATGAGCAA 58.623 37.500 0.00 0.00 32.98 3.91
85 86 4.973168 ACTTGTTGAAGAGGTTATGAGCA 58.027 39.130 0.00 0.00 32.98 4.26
86 87 5.948992 AACTTGTTGAAGAGGTTATGAGC 57.051 39.130 0.00 0.00 32.98 4.26
87 88 8.608844 ACTAAACTTGTTGAAGAGGTTATGAG 57.391 34.615 0.00 0.00 32.98 2.90
88 89 8.974060 AACTAAACTTGTTGAAGAGGTTATGA 57.026 30.769 0.00 0.00 32.98 2.15
89 90 9.665264 GAAACTAAACTTGTTGAAGAGGTTATG 57.335 33.333 0.00 0.00 32.98 1.90
90 91 8.847196 GGAAACTAAACTTGTTGAAGAGGTTAT 58.153 33.333 0.00 0.00 32.98 1.89
91 92 7.830201 TGGAAACTAAACTTGTTGAAGAGGTTA 59.170 33.333 0.00 0.00 32.98 2.85
92 93 6.661805 TGGAAACTAAACTTGTTGAAGAGGTT 59.338 34.615 0.00 0.00 32.98 3.50
93 94 6.184789 TGGAAACTAAACTTGTTGAAGAGGT 58.815 36.000 0.00 0.00 32.98 3.85
94 95 6.542370 TCTGGAAACTAAACTTGTTGAAGAGG 59.458 38.462 0.00 0.00 32.98 3.69
95 96 7.410485 GTCTGGAAACTAAACTTGTTGAAGAG 58.590 38.462 0.00 0.00 32.98 2.85
96 97 6.317893 GGTCTGGAAACTAAACTTGTTGAAGA 59.682 38.462 0.00 0.00 32.98 2.87
97 98 6.094881 TGGTCTGGAAACTAAACTTGTTGAAG 59.905 38.462 0.00 0.00 35.07 3.02
98 99 5.946972 TGGTCTGGAAACTAAACTTGTTGAA 59.053 36.000 0.00 0.00 0.00 2.69
99 100 5.502079 TGGTCTGGAAACTAAACTTGTTGA 58.498 37.500 0.00 0.00 0.00 3.18
100 101 5.828299 TGGTCTGGAAACTAAACTTGTTG 57.172 39.130 0.00 0.00 0.00 3.33
101 102 7.418337 AATTGGTCTGGAAACTAAACTTGTT 57.582 32.000 0.00 0.00 0.00 2.83
102 103 7.418337 AAATTGGTCTGGAAACTAAACTTGT 57.582 32.000 0.00 0.00 0.00 3.16
103 104 9.981114 AATAAATTGGTCTGGAAACTAAACTTG 57.019 29.630 0.00 0.00 0.00 3.16
108 109 9.990360 GGAAAAATAAATTGGTCTGGAAACTAA 57.010 29.630 0.00 0.00 0.00 2.24
109 110 9.374711 AGGAAAAATAAATTGGTCTGGAAACTA 57.625 29.630 0.00 0.00 0.00 2.24
110 111 8.262601 AGGAAAAATAAATTGGTCTGGAAACT 57.737 30.769 0.00 0.00 0.00 2.66
111 112 8.902540 AAGGAAAAATAAATTGGTCTGGAAAC 57.097 30.769 0.00 0.00 0.00 2.78
112 113 8.709308 TGAAGGAAAAATAAATTGGTCTGGAAA 58.291 29.630 0.00 0.00 0.00 3.13
113 114 8.256356 TGAAGGAAAAATAAATTGGTCTGGAA 57.744 30.769 0.00 0.00 0.00 3.53
114 115 7.847711 TGAAGGAAAAATAAATTGGTCTGGA 57.152 32.000 0.00 0.00 0.00 3.86
115 116 8.900983 TTTGAAGGAAAAATAAATTGGTCTGG 57.099 30.769 0.00 0.00 0.00 3.86
127 128 9.492973 CTGAACACCAATATTTGAAGGAAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
128 129 8.482128 ACTGAACACCAATATTTGAAGGAAAAA 58.518 29.630 0.00 0.00 0.00 1.94
129 130 8.017418 ACTGAACACCAATATTTGAAGGAAAA 57.983 30.769 0.00 0.00 0.00 2.29
130 131 7.595819 ACTGAACACCAATATTTGAAGGAAA 57.404 32.000 0.00 0.00 0.00 3.13
131 132 8.739039 CATACTGAACACCAATATTTGAAGGAA 58.261 33.333 0.00 0.00 0.00 3.36
132 133 7.148086 GCATACTGAACACCAATATTTGAAGGA 60.148 37.037 0.00 0.00 0.00 3.36
133 134 6.974622 GCATACTGAACACCAATATTTGAAGG 59.025 38.462 0.00 0.00 0.00 3.46
134 135 7.537715 TGCATACTGAACACCAATATTTGAAG 58.462 34.615 0.00 0.00 0.00 3.02
135 136 7.459795 TGCATACTGAACACCAATATTTGAA 57.540 32.000 0.00 0.00 0.00 2.69
136 137 7.312154 GTTGCATACTGAACACCAATATTTGA 58.688 34.615 0.00 0.00 0.00 2.69
137 138 6.251163 CGTTGCATACTGAACACCAATATTTG 59.749 38.462 0.00 0.00 0.00 2.32
138 139 6.072175 ACGTTGCATACTGAACACCAATATTT 60.072 34.615 0.00 0.00 0.00 1.40
139 140 5.414454 ACGTTGCATACTGAACACCAATATT 59.586 36.000 0.00 0.00 0.00 1.28
140 141 4.941263 ACGTTGCATACTGAACACCAATAT 59.059 37.500 0.00 0.00 0.00 1.28
141 142 4.320023 ACGTTGCATACTGAACACCAATA 58.680 39.130 0.00 0.00 0.00 1.90
142 143 3.146066 ACGTTGCATACTGAACACCAAT 58.854 40.909 0.00 0.00 0.00 3.16
143 144 2.546368 GACGTTGCATACTGAACACCAA 59.454 45.455 0.00 0.00 0.00 3.67
144 145 2.139917 GACGTTGCATACTGAACACCA 58.860 47.619 0.00 0.00 0.00 4.17
145 146 2.412089 GAGACGTTGCATACTGAACACC 59.588 50.000 0.00 0.00 0.00 4.16
146 147 3.318017 AGAGACGTTGCATACTGAACAC 58.682 45.455 0.00 0.00 0.00 3.32
147 148 3.660501 AGAGACGTTGCATACTGAACA 57.339 42.857 0.00 0.00 0.00 3.18
148 149 4.326548 GGTAAGAGACGTTGCATACTGAAC 59.673 45.833 0.00 0.00 0.00 3.18
149 150 4.021807 TGGTAAGAGACGTTGCATACTGAA 60.022 41.667 0.00 0.00 0.00 3.02
150 151 3.508402 TGGTAAGAGACGTTGCATACTGA 59.492 43.478 0.00 0.00 0.00 3.41
151 152 3.845178 TGGTAAGAGACGTTGCATACTG 58.155 45.455 0.00 0.00 0.00 2.74
152 153 3.762288 TCTGGTAAGAGACGTTGCATACT 59.238 43.478 0.00 0.00 0.00 2.12
153 154 3.858238 GTCTGGTAAGAGACGTTGCATAC 59.142 47.826 0.00 0.00 33.39 2.39
154 155 3.508402 TGTCTGGTAAGAGACGTTGCATA 59.492 43.478 0.00 0.00 44.68 3.14
155 156 2.299013 TGTCTGGTAAGAGACGTTGCAT 59.701 45.455 0.00 0.00 44.68 3.96
156 157 1.684450 TGTCTGGTAAGAGACGTTGCA 59.316 47.619 0.00 0.00 44.68 4.08
157 158 2.059541 GTGTCTGGTAAGAGACGTTGC 58.940 52.381 0.00 0.00 44.68 4.17
162 163 5.527033 ACTTAAACGTGTCTGGTAAGAGAC 58.473 41.667 0.00 0.00 42.04 3.36
163 164 5.278660 GGACTTAAACGTGTCTGGTAAGAGA 60.279 44.000 4.05 0.00 31.37 3.10
164 165 4.922103 GGACTTAAACGTGTCTGGTAAGAG 59.078 45.833 4.05 0.00 31.37 2.85
165 166 4.557296 CGGACTTAAACGTGTCTGGTAAGA 60.557 45.833 4.98 0.00 36.30 2.10
166 167 3.671928 CGGACTTAAACGTGTCTGGTAAG 59.328 47.826 4.98 0.00 36.30 2.34
167 168 3.641648 CGGACTTAAACGTGTCTGGTAA 58.358 45.455 4.98 0.00 36.30 2.85
168 169 3.287312 CGGACTTAAACGTGTCTGGTA 57.713 47.619 4.98 0.00 36.30 3.25
169 170 2.144482 CGGACTTAAACGTGTCTGGT 57.856 50.000 4.98 0.00 36.30 4.00
171 172 1.790623 CACCGGACTTAAACGTGTCTG 59.209 52.381 9.46 5.77 38.80 3.51
172 173 1.870993 GCACCGGACTTAAACGTGTCT 60.871 52.381 9.46 0.00 34.01 3.41
173 174 0.509929 GCACCGGACTTAAACGTGTC 59.490 55.000 9.46 0.00 0.00 3.67
174 175 0.179078 TGCACCGGACTTAAACGTGT 60.179 50.000 9.46 0.00 0.00 4.49
175 176 0.938713 TTGCACCGGACTTAAACGTG 59.061 50.000 9.46 0.00 0.00 4.49
176 177 1.666054 TTTGCACCGGACTTAAACGT 58.334 45.000 9.46 0.00 0.00 3.99
177 178 2.759538 TTTTGCACCGGACTTAAACG 57.240 45.000 9.46 0.00 0.00 3.60
178 179 3.771798 TGTTTTTGCACCGGACTTAAAC 58.228 40.909 9.46 12.10 0.00 2.01
179 180 4.142138 ACATGTTTTTGCACCGGACTTAAA 60.142 37.500 9.46 0.75 0.00 1.52
180 181 3.381908 ACATGTTTTTGCACCGGACTTAA 59.618 39.130 9.46 0.00 0.00 1.85
181 182 2.952978 ACATGTTTTTGCACCGGACTTA 59.047 40.909 9.46 0.00 0.00 2.24
182 183 1.754226 ACATGTTTTTGCACCGGACTT 59.246 42.857 9.46 0.00 0.00 3.01
183 184 1.066908 CACATGTTTTTGCACCGGACT 59.933 47.619 9.46 0.00 0.00 3.85
184 185 1.202359 ACACATGTTTTTGCACCGGAC 60.202 47.619 9.46 0.00 0.00 4.79
185 186 1.107114 ACACATGTTTTTGCACCGGA 58.893 45.000 9.46 0.00 0.00 5.14
186 187 1.857837 GAACACATGTTTTTGCACCGG 59.142 47.619 0.00 0.00 38.56 5.28
187 188 2.808244 AGAACACATGTTTTTGCACCG 58.192 42.857 0.00 0.00 38.56 4.94
188 189 5.544136 AAAAGAACACATGTTTTTGCACC 57.456 34.783 0.00 0.00 38.56 5.01
189 190 6.597614 TGAAAAAGAACACATGTTTTTGCAC 58.402 32.000 9.23 5.09 42.59 4.57
190 191 6.791887 TGAAAAAGAACACATGTTTTTGCA 57.208 29.167 9.23 9.23 42.59 4.08
191 192 6.246125 CGTTGAAAAAGAACACATGTTTTTGC 59.754 34.615 9.36 7.09 42.59 3.68
192 193 7.287229 ACGTTGAAAAAGAACACATGTTTTTG 58.713 30.769 9.36 0.00 42.59 2.44
193 194 7.414814 ACGTTGAAAAAGAACACATGTTTTT 57.585 28.000 0.00 0.00 44.49 1.94
194 195 7.810759 ACTACGTTGAAAAAGAACACATGTTTT 59.189 29.630 3.44 0.00 38.56 2.43
195 196 7.309920 ACTACGTTGAAAAAGAACACATGTTT 58.690 30.769 3.44 0.00 38.56 2.83
196 197 6.848451 ACTACGTTGAAAAAGAACACATGTT 58.152 32.000 3.44 0.00 41.64 2.71
197 198 6.431198 ACTACGTTGAAAAAGAACACATGT 57.569 33.333 3.44 0.00 0.00 3.21
198 199 7.483375 TCAAACTACGTTGAAAAAGAACACATG 59.517 33.333 3.44 0.00 34.59 3.21
199 200 7.483691 GTCAAACTACGTTGAAAAAGAACACAT 59.516 33.333 3.44 0.00 39.18 3.21
200 201 6.797995 GTCAAACTACGTTGAAAAAGAACACA 59.202 34.615 3.44 0.00 39.18 3.72
201 202 6.249893 GGTCAAACTACGTTGAAAAAGAACAC 59.750 38.462 3.44 0.00 39.18 3.32
202 203 6.072618 TGGTCAAACTACGTTGAAAAAGAACA 60.073 34.615 3.44 0.83 39.18 3.18
203 204 6.316319 TGGTCAAACTACGTTGAAAAAGAAC 58.684 36.000 3.44 0.00 39.18 3.01
204 205 6.497785 TGGTCAAACTACGTTGAAAAAGAA 57.502 33.333 3.44 0.00 39.18 2.52
205 206 6.687081 ATGGTCAAACTACGTTGAAAAAGA 57.313 33.333 3.44 0.00 39.18 2.52
206 207 7.377662 GGTTATGGTCAAACTACGTTGAAAAAG 59.622 37.037 3.44 0.00 39.18 2.27
207 208 7.067251 AGGTTATGGTCAAACTACGTTGAAAAA 59.933 33.333 3.44 0.00 39.18 1.94
208 209 6.543100 AGGTTATGGTCAAACTACGTTGAAAA 59.457 34.615 3.44 0.00 39.18 2.29
209 210 6.056884 AGGTTATGGTCAAACTACGTTGAAA 58.943 36.000 3.44 0.00 39.18 2.69
210 211 5.613329 AGGTTATGGTCAAACTACGTTGAA 58.387 37.500 3.44 0.00 39.18 2.69
211 212 5.011329 AGAGGTTATGGTCAAACTACGTTGA 59.989 40.000 3.44 0.00 35.14 3.18
212 213 5.235516 AGAGGTTATGGTCAAACTACGTTG 58.764 41.667 0.00 0.00 0.00 4.10
213 214 5.479124 AGAGGTTATGGTCAAACTACGTT 57.521 39.130 0.00 0.00 0.00 3.99
214 215 5.479124 AAGAGGTTATGGTCAAACTACGT 57.521 39.130 0.00 0.00 0.00 3.57
215 216 5.929992 TCAAAGAGGTTATGGTCAAACTACG 59.070 40.000 0.00 0.00 0.00 3.51
216 217 7.660208 TCTTCAAAGAGGTTATGGTCAAACTAC 59.340 37.037 0.00 0.00 0.00 2.73
217 218 7.741785 TCTTCAAAGAGGTTATGGTCAAACTA 58.258 34.615 0.00 0.00 0.00 2.24
218 219 6.601332 TCTTCAAAGAGGTTATGGTCAAACT 58.399 36.000 0.00 0.00 0.00 2.66
219 220 6.877611 TCTTCAAAGAGGTTATGGTCAAAC 57.122 37.500 0.00 0.00 0.00 2.93
220 221 6.831353 TGTTCTTCAAAGAGGTTATGGTCAAA 59.169 34.615 0.00 0.00 36.22 2.69
221 222 6.361433 TGTTCTTCAAAGAGGTTATGGTCAA 58.639 36.000 0.00 0.00 36.22 3.18
222 223 5.935945 TGTTCTTCAAAGAGGTTATGGTCA 58.064 37.500 0.00 0.00 36.22 4.02
223 224 6.881602 AGATGTTCTTCAAAGAGGTTATGGTC 59.118 38.462 0.00 0.00 36.22 4.02
224 225 6.784031 AGATGTTCTTCAAAGAGGTTATGGT 58.216 36.000 0.00 0.00 36.22 3.55
225 226 7.693969 AAGATGTTCTTCAAAGAGGTTATGG 57.306 36.000 0.00 0.00 36.22 2.74
227 228 8.897752 GCATAAGATGTTCTTCAAAGAGGTTAT 58.102 33.333 0.00 0.00 37.89 1.89
228 229 7.064609 CGCATAAGATGTTCTTCAAAGAGGTTA 59.935 37.037 0.00 0.00 37.89 2.85
229 230 6.128172 CGCATAAGATGTTCTTCAAAGAGGTT 60.128 38.462 0.00 0.00 37.89 3.50
230 231 5.352569 CGCATAAGATGTTCTTCAAAGAGGT 59.647 40.000 0.00 0.00 37.89 3.85
231 232 5.582269 TCGCATAAGATGTTCTTCAAAGAGG 59.418 40.000 0.00 0.00 37.89 3.69
232 233 6.653273 TCGCATAAGATGTTCTTCAAAGAG 57.347 37.500 0.00 0.00 37.89 2.85
233 234 6.818142 TCATCGCATAAGATGTTCTTCAAAGA 59.182 34.615 6.82 0.00 45.96 2.52
234 235 6.904011 GTCATCGCATAAGATGTTCTTCAAAG 59.096 38.462 6.82 0.00 45.96 2.77
235 236 6.371271 TGTCATCGCATAAGATGTTCTTCAAA 59.629 34.615 6.82 0.00 45.96 2.69
236 237 5.874261 TGTCATCGCATAAGATGTTCTTCAA 59.126 36.000 6.82 0.00 45.96 2.69
237 238 5.418676 TGTCATCGCATAAGATGTTCTTCA 58.581 37.500 6.82 0.00 45.96 3.02
238 239 5.750547 TCTGTCATCGCATAAGATGTTCTTC 59.249 40.000 6.82 0.00 45.96 2.87
239 240 5.664457 TCTGTCATCGCATAAGATGTTCTT 58.336 37.500 6.82 0.00 45.96 2.52
240 241 5.268118 TCTGTCATCGCATAAGATGTTCT 57.732 39.130 6.82 0.00 45.96 3.01
241 242 5.277058 GGTTCTGTCATCGCATAAGATGTTC 60.277 44.000 6.82 3.48 45.96 3.18
242 243 4.572389 GGTTCTGTCATCGCATAAGATGTT 59.428 41.667 6.82 0.00 45.96 2.71
243 244 4.122776 GGTTCTGTCATCGCATAAGATGT 58.877 43.478 6.82 0.00 45.96 3.06
244 245 4.122046 TGGTTCTGTCATCGCATAAGATG 58.878 43.478 0.89 0.89 46.90 2.90
245 246 4.406648 TGGTTCTGTCATCGCATAAGAT 57.593 40.909 0.00 0.00 0.00 2.40
246 247 3.885724 TGGTTCTGTCATCGCATAAGA 57.114 42.857 0.00 0.00 0.00 2.10
247 248 4.122046 TCATGGTTCTGTCATCGCATAAG 58.878 43.478 0.00 0.00 0.00 1.73
248 249 4.135747 TCATGGTTCTGTCATCGCATAA 57.864 40.909 0.00 0.00 0.00 1.90
249 250 3.817709 TCATGGTTCTGTCATCGCATA 57.182 42.857 0.00 0.00 0.00 3.14
250 251 2.696989 TCATGGTTCTGTCATCGCAT 57.303 45.000 0.00 0.00 0.00 4.73
251 252 2.470983 TTCATGGTTCTGTCATCGCA 57.529 45.000 0.00 0.00 0.00 5.10
252 253 4.811024 TCTATTTCATGGTTCTGTCATCGC 59.189 41.667 0.00 0.00 0.00 4.58
253 254 5.235186 GGTCTATTTCATGGTTCTGTCATCG 59.765 44.000 0.00 0.00 0.00 3.84
254 255 5.529060 GGGTCTATTTCATGGTTCTGTCATC 59.471 44.000 0.00 0.00 0.00 2.92
255 256 5.044919 TGGGTCTATTTCATGGTTCTGTCAT 60.045 40.000 0.00 0.00 0.00 3.06
256 257 4.288366 TGGGTCTATTTCATGGTTCTGTCA 59.712 41.667 0.00 0.00 0.00 3.58
257 258 4.843728 TGGGTCTATTTCATGGTTCTGTC 58.156 43.478 0.00 0.00 0.00 3.51
258 259 4.927267 TGGGTCTATTTCATGGTTCTGT 57.073 40.909 0.00 0.00 0.00 3.41
259 260 4.037208 GCATGGGTCTATTTCATGGTTCTG 59.963 45.833 0.00 0.00 38.80 3.02
260 261 4.210331 GCATGGGTCTATTTCATGGTTCT 58.790 43.478 0.00 0.00 38.80 3.01
261 262 3.953612 TGCATGGGTCTATTTCATGGTTC 59.046 43.478 0.00 0.00 38.80 3.62
262 263 3.979911 TGCATGGGTCTATTTCATGGTT 58.020 40.909 0.00 0.00 38.80 3.67
263 264 3.668141 TGCATGGGTCTATTTCATGGT 57.332 42.857 0.00 0.00 38.80 3.55
264 265 4.404640 AGATGCATGGGTCTATTTCATGG 58.595 43.478 2.46 0.00 38.80 3.66
265 266 5.999600 TGTAGATGCATGGGTCTATTTCATG 59.000 40.000 2.46 0.00 40.66 3.07
266 267 6.000219 GTGTAGATGCATGGGTCTATTTCAT 59.000 40.000 2.46 0.00 30.35 2.57
267 268 5.104569 TGTGTAGATGCATGGGTCTATTTCA 60.105 40.000 2.46 0.00 30.35 2.69
268 269 5.237344 GTGTGTAGATGCATGGGTCTATTTC 59.763 44.000 2.46 0.00 30.35 2.17
269 270 5.104360 AGTGTGTAGATGCATGGGTCTATTT 60.104 40.000 2.46 0.00 30.35 1.40
270 271 4.410228 AGTGTGTAGATGCATGGGTCTATT 59.590 41.667 2.46 0.00 30.35 1.73
271 272 3.969976 AGTGTGTAGATGCATGGGTCTAT 59.030 43.478 2.46 0.00 30.35 1.98
272 273 3.374764 AGTGTGTAGATGCATGGGTCTA 58.625 45.455 2.46 0.00 0.00 2.59
273 274 2.169352 GAGTGTGTAGATGCATGGGTCT 59.831 50.000 2.46 0.00 0.00 3.85
274 275 2.555199 GAGTGTGTAGATGCATGGGTC 58.445 52.381 2.46 0.00 0.00 4.46
275 276 1.210478 GGAGTGTGTAGATGCATGGGT 59.790 52.381 2.46 0.00 0.00 4.51
276 277 1.475751 GGGAGTGTGTAGATGCATGGG 60.476 57.143 2.46 0.00 0.00 4.00
277 278 1.487976 AGGGAGTGTGTAGATGCATGG 59.512 52.381 2.46 0.00 0.00 3.66
278 279 2.996249 AGGGAGTGTGTAGATGCATG 57.004 50.000 2.46 0.00 0.00 4.06
279 280 4.307032 AAAAGGGAGTGTGTAGATGCAT 57.693 40.909 0.00 0.00 0.00 3.96
280 281 3.788227 AAAAGGGAGTGTGTAGATGCA 57.212 42.857 0.00 0.00 0.00 3.96
281 282 4.575885 TGTAAAAGGGAGTGTGTAGATGC 58.424 43.478 0.00 0.00 0.00 3.91
282 283 6.644347 AGATGTAAAAGGGAGTGTGTAGATG 58.356 40.000 0.00 0.00 0.00 2.90
283 284 6.875972 AGATGTAAAAGGGAGTGTGTAGAT 57.124 37.500 0.00 0.00 0.00 1.98
284 285 6.722590 TGTAGATGTAAAAGGGAGTGTGTAGA 59.277 38.462 0.00 0.00 0.00 2.59
285 286 6.812160 GTGTAGATGTAAAAGGGAGTGTGTAG 59.188 42.308 0.00 0.00 0.00 2.74
286 287 6.268158 TGTGTAGATGTAAAAGGGAGTGTGTA 59.732 38.462 0.00 0.00 0.00 2.90
287 288 5.071250 TGTGTAGATGTAAAAGGGAGTGTGT 59.929 40.000 0.00 0.00 0.00 3.72
288 289 5.408604 GTGTGTAGATGTAAAAGGGAGTGTG 59.591 44.000 0.00 0.00 0.00 3.82
289 290 5.307196 AGTGTGTAGATGTAAAAGGGAGTGT 59.693 40.000 0.00 0.00 0.00 3.55
290 291 5.794894 AGTGTGTAGATGTAAAAGGGAGTG 58.205 41.667 0.00 0.00 0.00 3.51
291 292 5.046520 GGAGTGTGTAGATGTAAAAGGGAGT 60.047 44.000 0.00 0.00 0.00 3.85
292 293 5.420409 GGAGTGTGTAGATGTAAAAGGGAG 58.580 45.833 0.00 0.00 0.00 4.30
293 294 4.224370 GGGAGTGTGTAGATGTAAAAGGGA 59.776 45.833 0.00 0.00 0.00 4.20
294 295 4.225267 AGGGAGTGTGTAGATGTAAAAGGG 59.775 45.833 0.00 0.00 0.00 3.95
301 302 5.818678 TGTAAAAGGGAGTGTGTAGATGT 57.181 39.130 0.00 0.00 0.00 3.06
366 371 3.006217 GCCTTTCAGAAATTGCTTGTCCT 59.994 43.478 9.32 0.00 0.00 3.85
372 377 5.068723 CCTCATATGCCTTTCAGAAATTGCT 59.931 40.000 15.08 6.81 0.00 3.91
382 387 0.819259 TGCCGCCTCATATGCCTTTC 60.819 55.000 0.00 0.00 0.00 2.62
390 395 2.346766 ACATGATTTGCCGCCTCATA 57.653 45.000 0.00 0.00 0.00 2.15
441 450 8.177119 TGACTTACTTCAGCATTGGTTTTTAT 57.823 30.769 0.00 0.00 0.00 1.40
442 451 7.575414 TGACTTACTTCAGCATTGGTTTTTA 57.425 32.000 0.00 0.00 0.00 1.52
448 457 6.506500 AAGAATGACTTACTTCAGCATTGG 57.493 37.500 0.00 0.00 37.03 3.16
456 465 7.849804 TCCATGCTTAAGAATGACTTACTTC 57.150 36.000 23.11 0.00 40.29 3.01
457 466 7.665559 TGTTCCATGCTTAAGAATGACTTACTT 59.334 33.333 23.11 0.00 40.29 2.24
460 469 7.611467 ACATGTTCCATGCTTAAGAATGACTTA 59.389 33.333 23.11 8.53 39.72 2.24
505 767 6.013379 TGTTCAGGCCAATAAAATCAACCTA 58.987 36.000 5.01 0.00 0.00 3.08
507 769 5.146010 TGTTCAGGCCAATAAAATCAACC 57.854 39.130 5.01 0.00 0.00 3.77
517 779 3.451902 CCCACATAAATGTTCAGGCCAAT 59.548 43.478 5.01 0.00 39.39 3.16
523 785 5.593909 TCCTATTGCCCACATAAATGTTCAG 59.406 40.000 0.00 0.00 39.39 3.02
526 788 5.719085 TGTTCCTATTGCCCACATAAATGTT 59.281 36.000 0.00 0.00 39.39 2.71
528 790 5.126869 TGTGTTCCTATTGCCCACATAAATG 59.873 40.000 0.00 0.00 31.55 2.32
533 795 2.897271 TGTGTTCCTATTGCCCACAT 57.103 45.000 0.00 0.00 31.55 3.21
581 843 5.648572 TGCGATTCATCAACATTGCATTTA 58.351 33.333 0.00 0.00 35.28 1.40
582 844 4.496360 TGCGATTCATCAACATTGCATTT 58.504 34.783 0.00 0.00 35.28 2.32
583 845 4.112716 TGCGATTCATCAACATTGCATT 57.887 36.364 0.00 0.00 35.28 3.56
584 846 3.786516 TGCGATTCATCAACATTGCAT 57.213 38.095 0.00 0.00 35.28 3.96
585 847 3.244156 GTTGCGATTCATCAACATTGCA 58.756 40.909 11.62 0.00 41.46 4.08
586 848 2.599973 GGTTGCGATTCATCAACATTGC 59.400 45.455 15.97 0.00 43.06 3.56
587 849 3.609373 GTGGTTGCGATTCATCAACATTG 59.391 43.478 15.97 0.00 43.06 2.82
590 852 1.539388 GGTGGTTGCGATTCATCAACA 59.461 47.619 15.97 4.92 43.06 3.33
591 853 1.812571 AGGTGGTTGCGATTCATCAAC 59.187 47.619 9.18 9.18 41.19 3.18
592 854 2.198827 AGGTGGTTGCGATTCATCAA 57.801 45.000 0.00 0.00 0.00 2.57
610 878 1.557651 GCCGCGACTCCTTTTAGTAG 58.442 55.000 8.23 0.00 0.00 2.57
622 890 4.632458 GGATCCTCTCGCCGCGAC 62.632 72.222 12.39 0.00 0.00 5.19
639 907 2.358737 GGCCCCATAAGATCGGCG 60.359 66.667 0.00 0.00 42.59 6.46
705 997 3.370840 TGGCAATGAGAAGGCATTACT 57.629 42.857 0.00 0.00 36.39 2.24
727 1019 5.104374 CACATGCTCTTTGTTCTTGTGTTT 58.896 37.500 0.00 0.00 33.73 2.83
811 1103 0.390603 TTGGCATCTACCGTCCGTTG 60.391 55.000 0.00 0.00 0.00 4.10
1432 1822 6.985188 TTGGATCTGAAGATTTAACCGAAG 57.015 37.500 0.00 0.00 34.37 3.79
1472 1867 0.111446 TGGATCAAACCAAGCCGGAA 59.889 50.000 5.05 0.00 36.96 4.30
1519 1923 1.007849 CCGGGGAGCAAACAAAACG 60.008 57.895 0.00 0.00 0.00 3.60
1555 1959 1.138859 CGTTGGGATCTGCATGAGGTA 59.861 52.381 0.00 0.00 0.00 3.08
1558 1962 0.107508 ACCGTTGGGATCTGCATGAG 60.108 55.000 0.00 0.00 36.97 2.90
1692 2509 4.766373 TGGATGCACACAATGTATTTCAGT 59.234 37.500 0.00 0.00 33.14 3.41
1729 2546 2.366266 GTGGTACCATCCGCCATAGTAA 59.634 50.000 19.72 0.00 34.52 2.24
2599 3416 4.691238 ACTTTAGTGTGGGTAGGGTGATA 58.309 43.478 0.00 0.00 0.00 2.15
2604 3421 5.046159 TCAATGTACTTTAGTGTGGGTAGGG 60.046 44.000 0.00 0.00 0.00 3.53
2704 3598 1.212935 CAAGGATCTACCCCACCCAAG 59.787 57.143 0.00 0.00 40.05 3.61
2734 3628 1.176527 CTGTTGTTACTGGCCCATGG 58.823 55.000 4.14 4.14 0.00 3.66
2736 3630 2.614481 CGTACTGTTGTTACTGGCCCAT 60.614 50.000 0.00 0.00 0.00 4.00
2858 3776 1.534595 CTTTTGACAGCTCAGCCAGAC 59.465 52.381 0.00 0.00 0.00 3.51
2952 3871 7.544217 GTGTTTGCCATTTGGGTACTTAATTAG 59.456 37.037 0.00 0.00 39.65 1.73
2958 3877 3.034635 TGTGTTTGCCATTTGGGTACTT 58.965 40.909 0.00 0.00 39.65 2.24
2960 3879 3.676291 ATGTGTTTGCCATTTGGGTAC 57.324 42.857 0.00 0.00 39.65 3.34
3040 3998 0.244450 CGTACTACGCTTGGTTGGGA 59.756 55.000 0.00 0.00 33.65 4.37
3120 4148 0.033503 TCATGCACCTACCTCGAGGA 60.034 55.000 37.69 19.49 39.15 3.71
3122 4150 1.269988 CCATCATGCACCTACCTCGAG 60.270 57.143 5.13 5.13 0.00 4.04
3125 4250 2.717639 AACCATCATGCACCTACCTC 57.282 50.000 0.00 0.00 0.00 3.85
3271 4400 4.642437 TGAGCTACACTAGAGATGGTGAAG 59.358 45.833 0.00 0.00 37.22 3.02
3349 4484 0.879090 GGTTTGTTAGCTGGGAACGG 59.121 55.000 0.00 0.00 40.79 4.44
3350 4485 0.515564 CGGTTTGTTAGCTGGGAACG 59.484 55.000 0.00 0.00 0.00 3.95
3351 4486 0.240145 GCGGTTTGTTAGCTGGGAAC 59.760 55.000 0.00 0.00 0.00 3.62
3384 4745 4.209307 AGATTCGAAGGAAGAAAGTCCC 57.791 45.455 3.35 0.00 38.59 4.46
3414 4775 6.420604 CACGAACAAAAAGGCTTCACATAATT 59.579 34.615 0.00 0.00 0.00 1.40
3415 4776 5.920273 CACGAACAAAAAGGCTTCACATAAT 59.080 36.000 0.00 0.00 0.00 1.28
3442 4803 9.736023 GCACCTATTTCCATTAAAGAACATTAG 57.264 33.333 0.00 0.00 0.00 1.73
3557 4918 6.861065 TCAAAATAGTTAAGGCCATCGATC 57.139 37.500 5.01 0.00 0.00 3.69
3683 5045 2.725312 GGCATCGAGCTCCTCCACA 61.725 63.158 8.47 0.00 44.79 4.17
3699 5061 3.134127 GGTGTTGATGCGGAGGGC 61.134 66.667 0.00 0.00 43.96 5.19
3773 5135 2.359975 TCGAGCTGAGCGGTCTGA 60.360 61.111 23.43 7.65 37.99 3.27
4022 5387 2.571528 GTCACTAGCATGCGACGAG 58.428 57.895 13.01 10.87 0.00 4.18
4088 5453 3.344515 GAGCACCCTAACGGAAAAATCT 58.655 45.455 0.00 0.00 34.64 2.40
4157 5523 3.367743 TACGCCCTCGACGTTGCT 61.368 61.111 4.83 0.00 41.93 3.91
4408 5786 2.350057 AGTGATAGGCAGAGTCGCTA 57.650 50.000 6.86 0.00 31.46 4.26
4736 6117 4.098055 CGCAGTAGATTATATGGAGCGT 57.902 45.455 0.00 0.00 38.08 5.07
4762 6449 4.091509 CGTGCAGTCCTGTACTTAACAATC 59.908 45.833 12.61 0.00 42.77 2.67
4887 6576 5.151297 AGCCATATTTGTCAAAGTTTGGG 57.849 39.130 15.47 7.24 0.00 4.12
4898 6587 4.147321 CAGGAGCCATAAGCCATATTTGT 58.853 43.478 0.00 0.00 45.47 2.83
4899 6588 3.508793 CCAGGAGCCATAAGCCATATTTG 59.491 47.826 0.00 0.00 45.47 2.32
5090 6781 6.670695 AATGTAAGGAAAGCCAGACAAATT 57.329 33.333 0.00 0.00 35.47 1.82
5091 6782 6.670695 AAATGTAAGGAAAGCCAGACAAAT 57.329 33.333 0.00 0.00 35.47 2.32
5092 6783 6.478512 AAAATGTAAGGAAAGCCAGACAAA 57.521 33.333 0.00 0.00 35.47 2.83
5093 6784 6.478512 AAAAATGTAAGGAAAGCCAGACAA 57.521 33.333 0.00 0.00 35.47 3.18
5160 6851 2.158769 TGGTGCAACTGTCTCTCATTGT 60.159 45.455 2.04 0.00 36.74 2.71
5162 6853 2.158769 TGTGGTGCAACTGTCTCTCATT 60.159 45.455 2.04 0.00 36.74 2.57
5185 6876 2.124507 TTGGGAAGTTCAGAGCCGGG 62.125 60.000 2.18 0.00 0.00 5.73
5192 6883 6.660949 AGGAAATTAGTCATTGGGAAGTTCAG 59.339 38.462 5.01 0.00 29.78 3.02
5265 6956 4.664640 GCAACATGCACGAACATTCAATTG 60.665 41.667 0.00 0.00 44.26 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.